AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0212840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0212840 MtrunA17_Chr2g0312261 97.386 153 4 0 1 153 1 153 3.01e-104 294
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0212840 AT1G79070.2 62.500 104 39 0 49 152 35 138 3.60e-41 134
Msa0212840 AT1G79070.1 62.500 104 39 0 49 152 35 138 3.60e-41 134

Find 63 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAGAATAATTAAATTTA+AGG 0.083848 2_1:-55045248 None:intergenic
CCAGCTAATAGTTGAAATTT+AGG 0.159116 2_1:+55045318 Msa0212840:three_prime_UTR
CACTTGCTTGGTGCCAATTC+AGG 0.210146 2_1:+55045279 Msa0212840:three_prime_UTR
CCAATTCAGGGCATTCAAAT+TGG 0.274398 2_1:+55045292 Msa0212840:three_prime_UTR
AAAATTTGTGCCGGGGTATC+AGG 0.287300 2_1:+55038777 Msa0212840:five_prime_UTR
GGAATCCCCGGCGGCGTTAT+CGG 0.290008 2_1:-55038975 None:intergenic
AAAGCAACCACCGAAAGTTC+TGG 0.305778 2_1:+55045149 Msa0212840:CDS
TAGAGGAAGAGAGATGATTT+TGG 0.306248 2_1:-55039096 None:intergenic
GACAATTCACCCAGAACTTT+CGG 0.356021 2_1:-55045159 None:intergenic
CGTATCAAGCTGTATCTTAT+CGG 0.362579 2_1:+55038745 Msa0212840:five_prime_UTR
CTGCTAAGATATCTAGTGTT+AGG 0.373165 2_1:+55043239 Msa0212840:CDS
ATTATCAATCCGCCCTTGTA+TGG 0.378975 2_1:-55043296 None:intergenic
ACAAGAATAATTAAATTTAA+GGG 0.382420 2_1:-55045247 None:intergenic
GATTCTCTCTTCCGTAATTA+CGG 0.398983 2_1:+55039039 Msa0212840:CDS
GAATCCCCGGCGGCGTTATC+GGG 0.401146 2_1:-55038974 None:intergenic
CCTAAATTTCAACTATTAGC+TGG 0.408711 2_1:-55045318 None:intergenic
CCAATTTGAATGCCCTGAAT+TGG 0.421477 2_1:-55045292 None:intergenic
GAAATCGAAATCCGTAATTA+CGG 0.434734 2_1:-55039050 None:intergenic
TCCGGTGAGACGATCGATAG+AGG 0.449983 2_1:-55039113 None:intergenic
TCCTCTATCGATCGTCTCAC+CGG 0.463075 2_1:+55039112 Msa0212840:CDS
ACTTGCTTGGTGCCAATTCA+GGG 0.467726 2_1:+55045280 Msa0212840:three_prime_UTR
TGTTAGCATATACACTTGCT+TGG 0.470834 2_1:+55045267 Msa0212840:three_prime_UTR
AAGCAACCACCGAAAGTTCT+GGG 0.473364 2_1:+55045150 Msa0212840:CDS
GTCTATAAAGCCTGATACCC+CGG 0.475948 2_1:-55038787 None:intergenic
TCGCCGGCGTGAGAACTTGA+AGG 0.479017 2_1:-55038938 None:intergenic
GCAGCATGTTGCATTATGAA+TGG 0.491520 2_1:-55043220 None:intergenic
CTCGAAGAGCTCTGATGTGT+TGG 0.502844 2_1:+55039000 Msa0212840:CDS
AATTTACAACAGAATTCAGT+GGG 0.503677 2_1:-55045394 None:intergenic
ATAGACCGTATTATATCTAC+TGG 0.506220 2_1:+55043319 Msa0212840:CDS
CTGAACCCGATAACGCCGCC+GGG 0.510668 2_1:+55038969 Msa0212840:CDS
TAATTAAATTTAAGGGCTCA+AGG 0.524061 2_1:-55045240 None:intergenic
GCTCTTCGAGAGGGAATCCC+CGG 0.530301 2_1:-55038987 None:intergenic
TTATGTCGTGACAACAGCTC+TGG 0.533805 2_1:-55038809 None:intergenic
TAGTGCCAGTAGATATAATA+CGG 0.535949 2_1:-55043324 None:intergenic
ATGGTAGTGATACATACATA+AGG 0.540967 2_1:-55045208 None:intergenic
ATATCTACTGGCACTACTCA+TGG 0.541647 2_1:+55043331 Msa0212840:CDS
AGCTCTGATGTGTTGGCGAA+AGG 0.542416 2_1:+55039007 Msa0212840:CDS
TCACTTCTAAAATCCATACA+AGG 0.547199 2_1:+55043283 Msa0212840:CDS
TCTGAACCCGATAACGCCGC+CGG 0.556045 2_1:+55038968 Msa0212840:CDS
GGGCTCAAGGGTGCATTGCA+TGG 0.574067 2_1:-55045227 None:intergenic
GTAGTTTGCGACGGAAGTGA+TGG 0.586161 2_1:-55038839 None:intergenic
AATTAAATTTAAGGGCTCAA+GGG 0.586471 2_1:-55045239 None:intergenic
CACATCAGAGCTCTTCGAGA+GGG 0.610204 2_1:-55038996 None:intergenic
GGGTTCAGAACTGTTCTCGC+CGG 0.616019 2_1:-55038954 None:intergenic
TCTATCGATCGTCTCACCGG+AGG 0.616702 2_1:+55039115 Msa0212840:CDS
AAATTTACAACAGAATTCAG+TGG 0.620096 2_1:-55045395 None:intergenic
AATTCACCCAGAACTTTCGG+TGG 0.620423 2_1:-55045156 None:intergenic
GTTTGCGACGGAAGTGATGG+TGG 0.634221 2_1:-55038836 None:intergenic
CACTTCTAAAATCCATACAA+GGG 0.639964 2_1:+55043284 Msa0212840:CDS
TTCTAAAATCCATACAAGGG+CGG 0.640770 2_1:+55043287 Msa0212840:CDS
ACACATCAGAGCTCTTCGAG+AGG 0.647372 2_1:-55038997 None:intergenic
TTTACAACAGAATTCAGTGG+GGG 0.659032 2_1:-55045392 None:intergenic
GTCGCAAACTACTCTCACAA+TGG 0.663235 2_1:+55038850 Msa0212840:exon
AGGTTCAGTTTGAACGACGA+CGG 0.671570 2_1:-55038918 None:intergenic
TGTTGCATTATGAATGGCAA+GGG 0.683324 2_1:-55043214 None:intergenic
ATTGTGAGAGTAGTTTGCGA+CGG 0.695394 2_1:-55038848 None:intergenic
ATGTTGCATTATGAATGGCA+AGG 0.713704 2_1:-55043215 None:intergenic
TGAACCCGATAACGCCGCCG+GGG 0.719933 2_1:+55038970 Msa0212840:CDS
AGTGTGGTGAGTGTCGCTAG+AGG 0.723144 2_1:-55038876 None:intergenic
CTTCGAGAGGGAATCCCCGG+CGG 0.723894 2_1:-55038984 None:intergenic
AATTACGGAAGAGAGAATCG+AGG 0.732714 2_1:-55039035 None:intergenic
ATTTACAACAGAATTCAGTG+GGG 0.744099 2_1:-55045393 None:intergenic
GAACCTTCAAGTTCTCACGC+CGG 0.786574 2_1:+55038935 Msa0212840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTATTTTAATTTTTGTG+TGG + chr2_1:55040771-55040790 Msa0212840:intron 10.0%
!!! ATTGTTGAATATTTTTATAA+GGG - chr2_1:55042376-55042395 None:intergenic 10.0%
!!! TATTGTTGAATATTTTTATA+AGG - chr2_1:55042377-55042396 None:intergenic 10.0%
!! AAAAAATAAAACTATAGTAT+AGG - chr2_1:55043383-55043402 None:intergenic 10.0%
!!! AGTTTTTAGTTTTAAATTTT+AGG + chr2_1:55043575-55043594 Msa0212840:intron 10.0%
!!! AAAATTATTTCTAATTAAAG+TGG + chr2_1:55043604-55043623 Msa0212840:intron 10.0%
!! AAATTATATACAAAAAAACT+TGG - chr2_1:55045122-55045141 None:intergenic 10.0%
!! ACAAGAATAATTAAATTTAA+GGG - chr2_1:55045250-55045269 None:intergenic 10.0%
!! AACAAGAATAATTAAATTTA+AGG - chr2_1:55045251-55045270 None:intergenic 10.0%
!! GTTTATACAAAAAATTTCTA+AGG + chr2_1:55040088-55040107 Msa0212840:intron 15.0%
!!! ATTTACTATGTTTTGTTATT+AGG + chr2_1:55040546-55040565 Msa0212840:intron 15.0%
!!! TTTACTATGTTTTGTTATTA+GGG + chr2_1:55040547-55040566 Msa0212840:intron 15.0%
!! TGTGTAAATTAAAATTAGTT+TGG - chr2_1:55040980-55040999 None:intergenic 15.0%
!!! ATCTTTTATTCAATTTTGTT+AGG + chr2_1:55041073-55041092 Msa0212840:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr2_1:55041297-55041316 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr2_1:55041296-55041315 Msa0212840:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr2_1:55041320-55041339 Msa0212840:intron 15.0%
!!! TCATTTTGAAACAATTTTTT+TGG + chr2_1:55041423-55041442 Msa0212840:intron 15.0%
!! CAAAGTTAAAATTGAATTTA+CGG + chr2_1:55043507-55043526 Msa0212840:intron 15.0%
!!! TTAGTTTTAAATTTTAGGAA+AGG + chr2_1:55043580-55043599 Msa0212840:intron 15.0%
!! ATTGCCTAAAATTAAAAAAA+GGG - chr2_1:55043881-55043900 None:intergenic 15.0%
!! AATTGCCTAAAATTAAAAAA+AGG - chr2_1:55043882-55043901 None:intergenic 15.0%
!! TACATATCAAAATAATAATC+TGG + chr2_1:55044451-55044470 Msa0212840:intron 15.0%
!!! GATTTTGAATAAATTTGATT+TGG + chr2_1:55044513-55044532 Msa0212840:intron 15.0%
!!! GAAATTTAGTCAATTAATTT+TGG + chr2_1:55044558-55044577 Msa0212840:intron 15.0%
!!! TTATTCTTCAAATTAGATTT+TGG + chr2_1:55044604-55044623 Msa0212840:intron 15.0%
!!! AAGAAACAATTTTCTTTTTT+TGG + chr2_1:55045441-55045460 Msa0212840:three_prime_UTR 15.0%
!!! TAATTTTGAAAAATTTGTGC+CGG + chr2_1:55038768-55038787 Msa0212840:five_prime_UTR 20.0%
!! CAAATTGAATGATTCATTAT+TGG + chr2_1:55039190-55039209 Msa0212840:intron 20.0%
!! ATTTACTATGTTTGGTTATT+AGG + chr2_1:55040680-55040699 Msa0212840:intron 20.0%
!! TTTACTATGTTTGGTTATTA+GGG + chr2_1:55040681-55040700 Msa0212840:intron 20.0%
!! TCTCAATTAAAATAATTCCA+TGG + chr2_1:55040864-55040883 Msa0212840:intron 20.0%
!! ACAAATATCTATAAACTATG+AGG - chr2_1:55040910-55040929 None:intergenic 20.0%
!! TAGTTAAATGAGAAAATTTC+TGG + chr2_1:55040939-55040958 Msa0212840:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr2_1:55041263-55041282 Msa0212840:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr2_1:55041306-55041325 None:intergenic 20.0%
!! GAAAAAGTTATTATTTGCAT+TGG + chr2_1:55041384-55041403 Msa0212840:intron 20.0%
!! GATTGAAAGATAAGATAAAA+TGG - chr2_1:55041627-55041646 None:intergenic 20.0%
!!! TAACACAGTATTATTGATTT+CGG + chr2_1:55041922-55041941 Msa0212840:intron 20.0%
!! TTACCACAAAAATTAAAATC+CGG - chr2_1:55042213-55042232 None:intergenic 20.0%
!!! ATTTTAATTTTTGTGGTAAG+AGG + chr2_1:55042214-55042233 Msa0212840:intron 20.0%
!! ACCATATTATTGCTAATTTA+AGG + chr2_1:55042316-55042335 Msa0212840:intron 20.0%
!! ACCTTAAATTAGCAATAATA+TGG - chr2_1:55042320-55042339 None:intergenic 20.0%
!!! TTTTTATAAGGGAAAAGAAA+GGG - chr2_1:55042365-55042384 None:intergenic 20.0%
!!! ATTTTTATAAGGGAAAAGAA+AGG - chr2_1:55042366-55042385 None:intergenic 20.0%
!! TAGTAACTATTAGAAAAACT+AGG - chr2_1:55043412-55043431 None:intergenic 20.0%
!! AATAGTCATTGTTACATATT+AGG + chr2_1:55043791-55043810 Msa0212840:intron 20.0%
!! TTGCCTAAAATTAAAAAAAG+GGG - chr2_1:55043880-55043899 None:intergenic 20.0%
!! TGCAAAAAAAATAAAGAACA+AGG - chr2_1:55043955-55043974 None:intergenic 20.0%
!!! CATTATTATTAATAGTTTGC+TGG + chr2_1:55043980-55043999 Msa0212840:intron 20.0%
!!! AGAAGTGTAAATGATTAATT+TGG - chr2_1:55044135-55044154 None:intergenic 20.0%
!!! ATAAATTTGATTTGGCAAAT+TGG + chr2_1:55044521-55044540 Msa0212840:intron 20.0%
!!! TTAAGACATTTCAAGTAATA+TGG - chr2_1:55044693-55044712 None:intergenic 20.0%
!!! CATCTAATTCTTTGAAAATA+TGG + chr2_1:55045028-55045047 Msa0212840:intron 20.0%
!! TACATACATAAGGAAAAAAT+GGG - chr2_1:55045201-55045220 None:intergenic 20.0%
!! ATACATACATAAGGAAAAAA+TGG - chr2_1:55045202-55045221 None:intergenic 20.0%
!!! AATTTTGAAAAATTTGTGCC+GGG + chr2_1:55038769-55038788 Msa0212840:five_prime_UTR 25.0%
!!! AACAAATTGAGCATTGATAA+TGG - chr2_1:55039294-55039313 None:intergenic 25.0%
!!! TCAATTTGTTATTGTACTGT+GGG + chr2_1:55039304-55039323 Msa0212840:intron 25.0%
!!! ATTTTTTTTCCAAAGTGTCA+AGG - chr2_1:55039689-55039708 None:intergenic 25.0%
!! TGACACTTTGGAAAAAAAAT+TGG + chr2_1:55039689-55039708 Msa0212840:intron 25.0%
!! GACACTTTGGAAAAAAAATT+GGG + chr2_1:55039690-55039709 Msa0212840:intron 25.0%
! AAACACAAAAAACAACGTTT+GGG - chr2_1:55039802-55039821 None:intergenic 25.0%
! TAAACACAAAAAACAACGTT+TGG - chr2_1:55039803-55039822 None:intergenic 25.0%
!! AAGCAGTATAAAGATTTTAG+AGG - chr2_1:55039922-55039941 None:intergenic 25.0%
!!! ACAAGCATAGTTCTAAATTA+TGG - chr2_1:55039964-55039983 None:intergenic 25.0%
!!! ACAAAAAATTTCTAAGGTTG+AGG + chr2_1:55040094-55040113 Msa0212840:intron 25.0%
!!! AATTTCTAAAGTGATTCTAG+AGG + chr2_1:55040277-55040296 Msa0212840:intron 25.0%
!!! ATTTCTAAAGTGATTCTAGA+GGG + chr2_1:55040278-55040297 Msa0212840:intron 25.0%
!! ACATAGTAAATTTTCCTACA+TGG - chr2_1:55040537-55040556 None:intergenic 25.0%
!!! TATTAGGGTTAGTTATGTTA+TGG + chr2_1:55040562-55040581 Msa0212840:intron 25.0%
! GTAGGAAAATTTACTATGTT+TGG + chr2_1:55040538-55040557 Msa0212840:intron 25.0%
!! ATAAGCCAATTAGACTATTT+TGG - chr2_1:55040813-55040832 None:intergenic 25.0%
! GTATTTAAATAGTCCTCAAT+TGG + chr2_1:55041477-55041496 Msa0212840:intron 25.0%
!! GAATAATTAAATTTTGCGAC+TGG + chr2_1:55041519-55041538 Msa0212840:intron 25.0%
!!! ACAAATGAAGGATTTGTTAT+TGG - chr2_1:55041658-55041677 None:intergenic 25.0%
! TACAGATTGAAAACAAATGA+AGG - chr2_1:55041670-55041689 None:intergenic 25.0%
! TGGCATAAAAATAGATTCAA+AGG - chr2_1:55041695-55041714 None:intergenic 25.0%
!!! TATTTTTATGCCACTATTCT+AGG + chr2_1:55041702-55041721 Msa0212840:intron 25.0%
! AAAGGAAAAGAAAACTCAAT+GGG + chr2_1:55041897-55041916 Msa0212840:intron 25.0%
! GAAATCAATAATACTGTGTT+AGG - chr2_1:55041923-55041942 None:intergenic 25.0%
! GTATTTGAAAAACTCAGAAA+AGG + chr2_1:55042109-55042128 Msa0212840:intron 25.0%
! TGTTATTGCTTATTCTATAC+CGG + chr2_1:55042152-55042171 Msa0212840:intron 25.0%
! TTCTTAGCTGAAAAGTAAAA+TGG + chr2_1:55042277-55042296 Msa0212840:intron 25.0%
! AACAATAAGAAAGAAAAAGC+TGG + chr2_1:55042390-55042409 Msa0212840:intron 25.0%
! ATTATATAATTCTCTCCACT+TGG + chr2_1:55042418-55042437 Msa0212840:intron 25.0%
!!! AATTCTTGGGAGTTTTAAAT+TGG + chr2_1:55042472-55042491 Msa0212840:intron 25.0%
!! TTCATTTTGTATGATACCTT+TGG + chr2_1:55042519-55042538 Msa0212840:intron 25.0%
! AGTTATGCTTGTAAGTTATA+TGG + chr2_1:55042559-55042578 Msa0212840:intron 25.0%
! AAGTAAAACAATTTCAAGCT+AGG - chr2_1:55042625-55042644 None:intergenic 25.0%
!!! TAGCTTGAAATTGTTTTACT+TGG + chr2_1:55042624-55042643 Msa0212840:intron 25.0%
! TTATGACATCTTAGAGTTAT+AGG - chr2_1:55043111-55043130 None:intergenic 25.0%
! AGAGTAATAAAACAGTGTAA+TGG - chr2_1:55043486-55043505 None:intergenic 25.0%
! GCTTGAGATTATAACTTATA+AGG + chr2_1:55043675-55043694 Msa0212840:intron 25.0%
!!! TTCCCCCTTTTTTTAATTTT+AGG + chr2_1:55043874-55043893 Msa0212840:intron 25.0%
! TGCCTAAAATTAAAAAAAGG+GGG - chr2_1:55043879-55043898 None:intergenic 25.0%
!! TTAATTTTAGGCAATTACTC+TGG + chr2_1:55043886-55043905 Msa0212840:intron 25.0%
!! TAATCGTGTTTTATCCTTTA+AGG + chr2_1:55044358-55044377 Msa0212840:intron 25.0%
!! AATAATAATCTGGCTTGATA+TGG + chr2_1:55044461-55044480 Msa0212840:intron 25.0%
! ATGATTCTAATGAGAATCAA+AGG + chr2_1:55044716-55044735 Msa0212840:intron 25.0%
! CTATTACAATGGTTACTAAT+GGG + chr2_1:55044935-55044954 Msa0212840:intron 25.0%
! TAATCAAATCAATGCAAACT+AGG - chr2_1:55045068-55045087 None:intergenic 25.0%
! AAAAACTTGGTCAGAAAAAA+TGG - chr2_1:55045109-55045128 None:intergenic 25.0%
! AATTAAATTTAAGGGCTCAA+GGG - chr2_1:55045242-55045261 None:intergenic 25.0%
! TAATTAAATTTAAGGGCTCA+AGG - chr2_1:55045243-55045262 None:intergenic 25.0%
! AATTTACAACAGAATTCAGT+GGG - chr2_1:55045397-55045416 None:intergenic 25.0%
! AAATTTACAACAGAATTCAG+TGG - chr2_1:55045398-55045417 None:intergenic 25.0%
!!! CAATTTTCTTTTTTTGGTCA+AGG + chr2_1:55045447-55045466 Msa0212840:three_prime_UTR 25.0%
!! ATTTTGAAAAATTTGTGCCG+GGG + chr2_1:55038770-55038789 Msa0212840:five_prime_UTR 30.0%
GAAATCGAAATCCGTAATTA+CGG - chr2_1:55039053-55039072 None:intergenic 30.0%
AAAATGTTGTAAAATCCGCA+AGG - chr2_1:55039167-55039186 None:intergenic 30.0%
CATGTCACTGTTATTAATGT+TGG + chr2_1:55039247-55039266 Msa0212840:intron 30.0%
!! CTCAATTTGTTATTGTACTG+TGG + chr2_1:55039303-55039322 Msa0212840:intron 30.0%
!! CAATTTGTTATTGTACTGTG+GGG + chr2_1:55039305-55039324 Msa0212840:intron 30.0%
ACACATTCAATTAGAACTGT+CGG + chr2_1:55039463-55039482 Msa0212840:intron 30.0%
AATTACAGTAGCTATACCAT+TGG + chr2_1:55039726-55039745 Msa0212840:intron 30.0%
!!! TACGGAACATTTTTTTTTCC+AGG + chr2_1:55039843-55039862 Msa0212840:intron 30.0%
TTGCAAGAGTAATATGTATG+CGG - chr2_1:55040121-55040140 None:intergenic 30.0%
ATTACTCTTGCAATAAGTGT+TGG + chr2_1:55040128-55040147 Msa0212840:intron 30.0%
TTACTCTTGCAATAAGTGTT+GGG + chr2_1:55040129-55040148 Msa0212840:intron 30.0%
AAAGAGATCATGAACTTTAG+AGG - chr2_1:55040196-55040215 None:intergenic 30.0%
TAAGATTTGAGGACAAACAT+GGG - chr2_1:55040219-55040238 None:intergenic 30.0%
!! TTTCTAAAGTGATTCTAGAG+GGG + chr2_1:55040279-55040298 Msa0212840:intron 30.0%
!! TTTCTAAAGTGATTCTAGTC+AGG + chr2_1:55040602-55040621 Msa0212840:intron 30.0%
! AATTTTCCTACATGACCAAA+GGG - chr2_1:55040663-55040682 None:intergenic 30.0%
! AAATTTTCCTACATGACCAA+AGG - chr2_1:55040664-55040683 None:intergenic 30.0%
!! TATTAGGGTTAGTCATGTTA+TGG + chr2_1:55040696-55040715 Msa0212840:intron 30.0%
!! CATGTTATGGTTTCTGAAAT+TGG + chr2_1:55040709-55040728 Msa0212840:intron 30.0%
AGTTGCCAAAATAGTCTAAT+TGG + chr2_1:55040805-55040824 Msa0212840:intron 30.0%
GTAAACTTGGACATAGATTA+AGG - chr2_1:55040839-55040858 None:intergenic 30.0%
! ATAAACTATGAGGACTTTTC+AGG - chr2_1:55040900-55040919 None:intergenic 30.0%
!! AACATTTAAAGAAGCACTTG+TGG - chr2_1:55041052-55041071 None:intergenic 30.0%
!! AGTCAGTTGATAAGTTTGTT+AGG + chr2_1:55041150-55041169 Msa0212840:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr2_1:55041214-55041233 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr2_1:55041215-55041234 Msa0212840:intron 30.0%
AGAAAGAATTCCTAGAATAG+TGG - chr2_1:55041715-55041734 None:intergenic 30.0%
CCTATCAATGAACATTTGTT+GGG - chr2_1:55041754-55041773 None:intergenic 30.0%
TACTTTGCTACTCTATAAAC+TGG + chr2_1:55041825-55041844 Msa0212840:intron 30.0%
! AGTTTTCTTTTCCTTTGACT+TGG - chr2_1:55041893-55041912 None:intergenic 30.0%
CAAAGGAAAAGAAAACTCAA+TGG + chr2_1:55041896-55041915 Msa0212840:intron 30.0%
!! TAGTGGTATTGATTGTTTCT+CGG - chr2_1:55041988-55042007 None:intergenic 30.0%
GTAGGATAAACACAAGTATT+TGG - chr2_1:55042025-55042044 None:intergenic 30.0%
GTGAATTGTAAGCAAGTATT+TGG - chr2_1:55042057-55042076 None:intergenic 30.0%
! AAGAAAGAGTGTGAAACTTT+AGG + chr2_1:55042179-55042198 Msa0212840:intron 30.0%
AAGTGACAACTATTTGAAGA+TGG + chr2_1:55042252-55042271 Msa0212840:intron 30.0%
GTAAAATGGAATAGAGACAT+TGG + chr2_1:55042291-55042310 Msa0212840:intron 30.0%
! ATACCTTTGGTTTATCTCAT+GGG + chr2_1:55042532-55042551 Msa0212840:intron 30.0%
TAAAACAATTTCAAGCTAGG+AGG - chr2_1:55042622-55042641 None:intergenic 30.0%
!! TTTTTCGATTGTATAGCTCA+TGG - chr2_1:55042886-55042905 None:intergenic 30.0%
!!! AACCTGAACTTTGTGTTTTT+TGG + chr2_1:55043161-55043180 Msa0212840:intron 30.0%
!!! ACCTGAACTTTGTGTTTTTT+GGG + chr2_1:55043162-55043181 Msa0212840:intron 30.0%
!! TCACTTCTAAAATCCATACA+AGG + chr2_1:55043283-55043302 Msa0212840:CDS 30.0%
!! CACTTCTAAAATCCATACAA+GGG + chr2_1:55043284-55043303 Msa0212840:CDS 30.0%
ATAGACCGTATTATATCTAC+TGG + chr2_1:55043319-55043338 Msa0212840:CDS 30.0%
TAGTGCCAGTAGATATAATA+CGG - chr2_1:55043327-55043346 None:intergenic 30.0%
TGGTATATACATGTCTCTAA+AGG + chr2_1:55043351-55043370 Msa0212840:intron 30.0%
GGGGGAAAATTATAATAGAT+TGG - chr2_1:55043861-55043880 None:intergenic 30.0%
AAGCCAAACATCTTATTCTA+GGG - chr2_1:55044071-55044090 None:intergenic 30.0%
AAAGCCAAACATCTTATTCT+AGG - chr2_1:55044072-55044091 None:intergenic 30.0%
CATCATGATGTACAATTTCA+GGG + chr2_1:55044252-55044271 Msa0212840:intron 30.0%
! ATGGCTTTCAAAATTTTCTG+CGG - chr2_1:55044674-55044693 None:intergenic 30.0%
AAAAGTAAATCCTAACTGCA+AGG - chr2_1:55044756-55044775 None:intergenic 30.0%
ATGTCTTAAATCATGCACTT+TGG - chr2_1:55044838-55044857 None:intergenic 30.0%
!! GGTACTATTTGCTATTACAA+TGG + chr2_1:55044924-55044943 Msa0212840:intron 30.0%
GCTATTACAATGGTTACTAA+TGG + chr2_1:55044934-55044953 Msa0212840:intron 30.0%
! ATGGTAGTGATACATACATA+AGG - chr2_1:55045211-55045230 None:intergenic 30.0%
CCTAAATTTCAACTATTAGC+TGG - chr2_1:55045321-55045340 None:intergenic 30.0%
CCAGCTAATAGTTGAAATTT+AGG + chr2_1:55045318-55045337 Msa0212840:three_prime_UTR 30.0%
ATTTACAACAGAATTCAGTG+GGG - chr2_1:55045396-55045415 None:intergenic 30.0%
CGTATCAAGCTGTATCTTAT+CGG + chr2_1:55038745-55038764 Msa0212840:five_prime_UTR 35.0%
GATTCTCTCTTCCGTAATTA+CGG + chr2_1:55039039-55039058 Msa0212840:CDS 35.0%
! TAGAGGAAGAGAGATGATTT+TGG - chr2_1:55039099-55039118 None:intergenic 35.0%
GAGTAAGAAAAAGATACCTC+CGG - chr2_1:55039134-55039153 None:intergenic 35.0%
! TACTCTTTTCACTTTCCTTG+CGG + chr2_1:55039149-55039168 Msa0212840:intron 35.0%
GTCACTGTTATTAATGTTGG+AGG + chr2_1:55039250-55039269 Msa0212840:intron 35.0%
TACTACAGATGTTGATGTGT+CGG - chr2_1:55039364-55039383 None:intergenic 35.0%
! ACTTCTAATTGAAGGTGTGT+CGG - chr2_1:55039498-55039517 None:intergenic 35.0%
! ACACCTTCAATTAGAAGTGT+CGG + chr2_1:55039500-55039519 Msa0212840:intron 35.0%
AGTGTATGTACTTGTGATCA+TGG + chr2_1:55039632-55039651 Msa0212840:intron 35.0%
!! GTGATCATGGTTCTAAATTG+TGG + chr2_1:55039645-55039664 Msa0212840:intron 35.0%
GAAAAAAAATTGGGCTGATG+CGG + chr2_1:55039699-55039718 Msa0212840:intron 35.0%
TGGTATAGCTACTGTAATTG+TGG - chr2_1:55039725-55039744 None:intergenic 35.0%
TGTGTTTAAAAACGCTTCAG+TGG + chr2_1:55039815-55039834 Msa0212840:intron 35.0%
CAGGATTTGTGAGCTATTAT+GGG + chr2_1:55039862-55039881 Msa0212840:intron 35.0%
AGGATTTGTGAGCTATTATG+GGG + chr2_1:55039863-55039882 Msa0212840:intron 35.0%
!! GATTTTAGAGGTCTCTGAAA+TGG - chr2_1:55039910-55039929 None:intergenic 35.0%
CTTAGCATACCATAAGAAGT+GGG - chr2_1:55040001-55040020 None:intergenic 35.0%
GTAAGATTTGAGGACAAACA+TGG - chr2_1:55040220-55040239 None:intergenic 35.0%
TGTCCTCAAATCTTACTCAA+AGG + chr2_1:55040224-55040243 Msa0212840:intron 35.0%
GTTCCTTTGAGTAAGATTTG+AGG - chr2_1:55040230-55040249 None:intergenic 35.0%
TACTCAAAGGAACACCTATA+AGG + chr2_1:55040237-55040256 Msa0212840:intron 35.0%
ACTCAAAGGAACACCTATAA+GGG + chr2_1:55040238-55040257 Msa0212840:intron 35.0%
AGACGTTTCAAAACCCTTAT+AGG - chr2_1:55040254-55040273 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr2_1:55040375-55040394 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr2_1:55040374-55040393 Msa0212840:intron 35.0%
! GTTGCCCTTTTTATTCTAGT+CGG + chr2_1:55040467-55040486 Msa0212840:intron 35.0%
! TTGCCCTTTTTATTCTAGTC+GGG + chr2_1:55040468-55040487 Msa0212840:intron 35.0%
! AATTTTCCTACATGGCCAAA+GGG - chr2_1:55040529-55040548 None:intergenic 35.0%
! AAATTTTCCTACATGGCCAA+AGG - chr2_1:55040530-55040549 None:intergenic 35.0%
TGAAATTTGATTCTGAGCGT+AGG + chr2_1:55040733-55040752 Msa0212840:intron 35.0%
AATTGAGAAGCTCGTAAACT+TGG - chr2_1:55040852-55040871 None:intergenic 35.0%
TTTCAGGAAATGATGAACCA+TGG - chr2_1:55040884-55040903 None:intergenic 35.0%
!! TTAAAGAAGCACTTGTGGAA+AGG - chr2_1:55041047-55041066 None:intergenic 35.0%
!! CAGTTGATAAGTTTGTTAGG+TGG + chr2_1:55041153-55041172 Msa0212840:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr2_1:55041345-55041364 Msa0212840:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr2_1:55041349-55041368 Msa0212840:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr2_1:55041449-55041468 Msa0212840:intron 35.0%
AAATAGTCCTCAATTGGTAG+AGG + chr2_1:55041483-55041502 Msa0212840:intron 35.0%
ATTCTTTCCTCTACCAATTG+AGG - chr2_1:55041493-55041512 None:intergenic 35.0%
! ATCTAGTGTGAAAGTGTGAA+AGG + chr2_1:55041548-55041567 Msa0212840:intron 35.0%
!! TGAAAGGAGAGTGTTCATTT+CGG + chr2_1:55041564-55041583 Msa0212840:intron 35.0%
CCCAACAAATGTTCATTGAT+AGG + chr2_1:55041751-55041770 Msa0212840:intron 35.0%
GCCTATCAATGAACATTTGT+TGG - chr2_1:55041755-55041774 None:intergenic 35.0%
ACTCTATAAACTGGTGAAGT+AGG + chr2_1:55041834-55041853 Msa0212840:intron 35.0%
! ACTGCTTAAGTTTTTCTACG+AGG + chr2_1:55041958-55041977 Msa0212840:intron 35.0%
TGCTTACAATTCACCATGTA+TGG + chr2_1:55042063-55042082 Msa0212840:intron 35.0%
TTACAATTCACCATGTATGG+TGG + chr2_1:55042066-55042085 Msa0212840:intron 35.0%
TTCACACTCTTTCTTCTTTC+CGG - chr2_1:55042174-55042193 None:intergenic 35.0%
!!! TGGCCGGATTTTAATTTTTG+TGG + chr2_1:55042207-55042226 Msa0212840:intron 35.0%
! TCAAATAGTTGTCACTTGTC+AGG - chr2_1:55042249-55042268 None:intergenic 35.0%
!! GCAATTGCAGTTGATAATTC+TGG + chr2_1:55042494-55042513 Msa0212840:intron 35.0%
! GATACCTTTGGTTTATCTCA+TGG + chr2_1:55042531-55042550 Msa0212840:intron 35.0%
! TACCTTTGGTTTATCTCATG+GGG + chr2_1:55042533-55042552 Msa0212840:intron 35.0%
TGCTTGTAAGTTATATGGTC+TGG + chr2_1:55042564-55042583 Msa0212840:intron 35.0%
TGTAAGTTATATGGTCTGGA+TGG + chr2_1:55042568-55042587 Msa0212840:intron 35.0%
GTAAGTTATATGGTCTGGAT+GGG + chr2_1:55042569-55042588 Msa0212840:intron 35.0%
! ATTTGCTAGACTAGACCATA+TGG - chr2_1:55042756-55042775 None:intergenic 35.0%
CTTTGATGGAGTCTAAGAAA+TGG - chr2_1:55042795-55042814 None:intergenic 35.0%
! TCTATGGTGCACTACATTTT+TGG - chr2_1:55042849-55042868 None:intergenic 35.0%
GGAATATTTACACAGCTCTA+TGG - chr2_1:55042865-55042884 None:intergenic 35.0%
GACAACTCTATAGTCATCTT+GGG - chr2_1:55042923-55042942 None:intergenic 35.0%
AGACAACTCTATAGTCATCT+TGG - chr2_1:55042924-55042943 None:intergenic 35.0%
ACTCTCCATTGAAGTCTTAA+TGG + chr2_1:55042978-55042997 Msa0212840:intron 35.0%
CATAGCCATTAAGACTTCAA+TGG - chr2_1:55042986-55043005 None:intergenic 35.0%
TGAAGTCTTAATGGCTATGT+CGG + chr2_1:55042987-55043006 Msa0212840:intron 35.0%
! TATAGGAAAAGCTTTAGCAG+AGG - chr2_1:55043094-55043113 None:intergenic 35.0%
!! AATACTCTAGCTCTACAACT+TGG + chr2_1:55043137-55043156 Msa0212840:intron 35.0%
TGTTGCATTATGAATGGCAA+GGG - chr2_1:55043217-55043236 None:intergenic 35.0%
ATGTTGCATTATGAATGGCA+AGG - chr2_1:55043218-55043237 None:intergenic 35.0%
CTGCTAAGATATCTAGTGTT+AGG + chr2_1:55043239-55043258 Msa0212840:CDS 35.0%
!! TTCTAAAATCCATACAAGGG+CGG + chr2_1:55043287-55043306 Msa0212840:CDS 35.0%
TTTGCTTGTATCATCACAAC+TGG + chr2_1:55044009-55044028 Msa0212840:intron 35.0%
TTGCCCTAGAATAAGATGTT+TGG + chr2_1:55044065-55044084 Msa0212840:intron 35.0%
!! TTTGGCTTTACAAGCTAGTT+TGG + chr2_1:55044083-55044102 Msa0212840:intron 35.0%
!!! ATTTTCCAGGGGTATTTGTA+TGG - chr2_1:55044160-55044179 None:intergenic 35.0%
TACAAATACCCCTGGAAAAT+CGG + chr2_1:55044160-55044179 Msa0212840:intron 35.0%
! TAGTACAATCCGATTTTCCA+GGG - chr2_1:55044172-55044191 None:intergenic 35.0%
! ATAGTACAATCCGATTTTCC+AGG - chr2_1:55044173-55044192 None:intergenic 35.0%
GCATCATGATGTACAATTTC+AGG + chr2_1:55044251-55044270 Msa0212840:intron 35.0%
! TGACCTGATTGATTTCCATT+TGG + chr2_1:55044294-55044313 Msa0212840:intron 35.0%
TCTCCAAATGGAAATCAATC+AGG - chr2_1:55044300-55044319 None:intergenic 35.0%
! GACAAGTTACTTTCTCCAAA+TGG - chr2_1:55044312-55044331 None:intergenic 35.0%
!!! GCTGTGTTTAGTTTTGCATT+TGG - chr2_1:55044634-55044653 None:intergenic 35.0%
AATGAGAATCAAAGGACTTG+AGG + chr2_1:55044724-55044743 Msa0212840:intron 35.0%
TGATCAGAAATCCAAGTACA+AGG + chr2_1:55044784-55044803 Msa0212840:intron 35.0%
! TGATTTGCAGCAATGATAAG+AGG + chr2_1:55044996-55045015 Msa0212840:intron 35.0%
TGTTAGCATATACACTTGCT+TGG + chr2_1:55045267-55045286 Msa0212840:three_prime_UTR 35.0%
TTTACAACAGAATTCAGTGG+GGG - chr2_1:55045395-55045414 None:intergenic 35.0%
! ATTGTGAGAGTAGTTTGCGA+CGG - chr2_1:55038851-55038870 None:intergenic 40.0%
AATTACGGAAGAGAGAATCG+AGG - chr2_1:55039038-55039057 None:intergenic 40.0%
!! TCAATTAGAACTGTCGGCTT+CGG + chr2_1:55039469-55039488 Msa0212840:intron 40.0%
ACTCTTGCTAACTTCAGCAA+TGG - chr2_1:55039603-55039622 None:intergenic 40.0%
GCAAAAGAGCAAACTTCCAA+TGG - chr2_1:55039745-55039764 None:intergenic 40.0%
TTTGGGAGATATGAACCGAA+AGG - chr2_1:55039785-55039804 None:intergenic 40.0%
AACGCTTCAGTGGATAACTA+CGG + chr2_1:55039825-55039844 Msa0212840:intron 40.0%
CCATAATAGCTCACAAATCC+TGG - chr2_1:55039864-55039883 None:intergenic 40.0%
CCAGGATTTGTGAGCTATTA+TGG + chr2_1:55039861-55039880 Msa0212840:intron 40.0%
GGATTTGTGAGCTATTATGG+GGG + chr2_1:55039864-55039883 Msa0212840:intron 40.0%
!! TGGCACAAAGTTTGCTCTTT+TGG - chr2_1:55039890-55039909 None:intergenic 40.0%
TGCTTCCACAATTGTAGTTG+CGG + chr2_1:55039937-55039956 Msa0212840:intron 40.0%
CCTTAGCATACCATAAGAAG+TGG - chr2_1:55040002-55040021 None:intergenic 40.0%
CCACTTCTTATGGTATGCTA+AGG + chr2_1:55039999-55040018 Msa0212840:intron 40.0%
AAATGATCTCGAACTGGACT+CGG - chr2_1:55040040-55040059 None:intergenic 40.0%
TCTGCAAAATGATCTCGAAC+TGG - chr2_1:55040046-55040065 None:intergenic 40.0%
ACTCGTAGTATCATGACGTT+TGG - chr2_1:55040070-55040089 None:intergenic 40.0%
!! CTTGCAATAAGTGTTGGGTT+CGG + chr2_1:55040134-55040153 Msa0212840:intron 40.0%
!! TTGCAATAAGTGTTGGGTTC+GGG + chr2_1:55040135-55040154 Msa0212840:intron 40.0%
CAATTGTCCATCAAGCTGAA+AGG + chr2_1:55040162-55040181 Msa0212840:intron 40.0%
TATCCTACCTTTCAGCTTGA+TGG - chr2_1:55040172-55040191 None:intergenic 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr2_1:55040324-55040343 Msa0212840:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr2_1:55040368-55040387 Msa0212840:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr2_1:55040369-55040388 Msa0212840:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr2_1:55040400-55040419 Msa0212840:intron 40.0%
CTAGAATAAAAAGGGCAACC+CGG - chr2_1:55040466-55040485 None:intergenic 40.0%
ATTACCCTTTCGGTTCAGTA+AGG - chr2_1:55040503-55040522 None:intergenic 40.0%
TTACTGAACCGAAAGGGTAA+TGG + chr2_1:55040502-55040521 Msa0212840:intron 40.0%
TACTGAACCGAAAGGGTAAT+GGG + chr2_1:55040503-55040522 Msa0212840:intron 40.0%
TAAAGTGATTCTAGTCAGGC+CGG + chr2_1:55040606-55040625 Msa0212840:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr2_1:55041453-55041472 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr2_1:55041348-55041367 Msa0212840:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr2_1:55041453-55041472 Msa0212840:intron 40.0%
GAAACAAACCTAGAAGACTG+TGG - chr2_1:55041786-55041805 None:intergenic 40.0%
! TTGTTTCTCGTGTTATAGCG+AGG + chr2_1:55041799-55041818 Msa0212840:intron 40.0%
GGTGAAGTAGGTAGTAACAT+TGG + chr2_1:55041846-55041865 Msa0212840:intron 40.0%
!!! TTTTCCTTTGACTTGGTAGC+AGG - chr2_1:55041886-55041905 None:intergenic 40.0%
! AGTATTTGGTAGCATGTGGT+AGG - chr2_1:55042043-55042062 None:intergenic 40.0%
! AGCAAGTATTTGGTAGCATG+TGG - chr2_1:55042047-55042066 None:intergenic 40.0%
AAGAATGCAACCACCATACA+TGG - chr2_1:55042079-55042098 None:intergenic 40.0%
GTGTGAAACTTTAGGTGTTC+TGG + chr2_1:55042187-55042206 Msa0212840:intron 40.0%
! GAAAGGGAAAAGCATGATGA+TGG - chr2_1:55042349-55042368 None:intergenic 40.0%
CAAGAAAAGCTTCTTCCAAG+TGG - chr2_1:55042436-55042455 None:intergenic 40.0%
! CTTGGAAGAAGCTTTTCTTG+TGG + chr2_1:55042436-55042455 Msa0212840:intron 40.0%
! AAACTCCCAAGAATTGACTC+TGG - chr2_1:55042467-55042486 None:intergenic 40.0%
ATCCCCATGAGATAAACCAA+AGG - chr2_1:55042538-55042557 None:intergenic 40.0%
CGTGGTAAAACACTCTTTGA+TGG - chr2_1:55042809-55042828 None:intergenic 40.0%
!!! TCAAAGAGTGTTTTACCACG+AGG + chr2_1:55042809-55042828 Msa0212840:intron 40.0%
CTGCTGTAGTGTGCTAATAT+GGG + chr2_1:55043015-55043034 Msa0212840:intron 40.0%
GCCCAAAAAACACAAAGTTC+AGG - chr2_1:55043166-55043185 None:intergenic 40.0%
GCAGCATGTTGCATTATGAA+TGG - chr2_1:55043223-55043242 None:intergenic 40.0%
ATTATCAATCCGCCCTTGTA+TGG - chr2_1:55043299-55043318 None:intergenic 40.0%
ATATCTACTGGCACTACTCA+TGG + chr2_1:55043331-55043350 Msa0212840:CDS 40.0%
TAGTTACTAACTGCTCGTGT+TGG + chr2_1:55043423-55043442 Msa0212840:intron 40.0%
TAAACAGAGGACATTGGAAG+GGG - chr2_1:55043462-55043481 None:intergenic 40.0%
CTAAACAGAGGACATTGGAA+GGG - chr2_1:55043463-55043482 None:intergenic 40.0%
AATGGCTAAACAGAGGACAT+TGG - chr2_1:55043468-55043487 None:intergenic 40.0%
ACAGTGTAATGGCTAAACAG+AGG - chr2_1:55043475-55043494 None:intergenic 40.0%
CCTCGGAAACAGTTGAAAAA+CGG - chr2_1:55043639-55043658 None:intergenic 40.0%
!! CGTTTTTCAACTGTTTCCGA+GGG + chr2_1:55043637-55043656 Msa0212840:intron 40.0%
TCAGCTCAGTAGTAAGAGTT+TGG - chr2_1:55043734-55043753 None:intergenic 40.0%
!! CATCTTATTCTAGGGCAACT+TGG - chr2_1:55044063-55044082 None:intergenic 40.0%
TCTTTCCATACAAATACCCC+TGG + chr2_1:55044152-55044171 Msa0212840:intron 40.0%
! AGTACAATCCGATTTTCCAG+GGG - chr2_1:55044171-55044190 None:intergenic 40.0%
GCTAACTAACATGCATGTGA+TGG - chr2_1:55044217-55044236 None:intergenic 40.0%
AAATCAATCAGGTCACAGGT+TGG - chr2_1:55044289-55044308 None:intergenic 40.0%
ATGGAAATCAATCAGGTCAC+AGG - chr2_1:55044293-55044312 None:intergenic 40.0%
! ATCTCAGTGTTTTGTACTCG+TGG - chr2_1:55044410-55044429 None:intergenic 40.0%
CTGAGATCAATCATTCTAGC+TGG + chr2_1:55044423-55044442 Msa0212840:intron 40.0%
TTTGGCATGATGATAGTCGA+TGG + chr2_1:55044576-55044595 Msa0212840:intron 40.0%
! ACACAGCCAAATTTGCTCTT+AGG + chr2_1:55044647-55044666 Msa0212840:intron 40.0%
! CACAGCCAAATTTGCTCTTA+GGG + chr2_1:55044648-55044667 Msa0212840:intron 40.0%
AAAGCAGATTGCCTTGTACT+TGG - chr2_1:55044798-55044817 None:intergenic 40.0%
AGCACAAGCAGATGAAATAG+TGG + chr2_1:55044903-55044922 Msa0212840:intron 40.0%
GACAATTCACCCAGAACTTT+CGG - chr2_1:55045162-55045181 None:intergenic 40.0%
CCAATTTGAATGCCCTGAAT+TGG - chr2_1:55045295-55045314 None:intergenic 40.0%
! CCAATTCAGGGCATTCAAAT+TGG + chr2_1:55045292-55045311 Msa0212840:three_prime_UTR 40.0%
! AAAATTTGTGCCGGGGTATC+AGG + chr2_1:55038777-55038796 Msa0212840:five_prime_UTR 45.0%
GTCTATAAAGCCTGATACCC+CGG - chr2_1:55038790-55038809 None:intergenic 45.0%
TTATGTCGTGACAACAGCTC+TGG - chr2_1:55038812-55038831 None:intergenic 45.0%
GTCGCAAACTACTCTCACAA+TGG + chr2_1:55038850-55038869 Msa0212840:exon 45.0%
!! CGTTTTCATCGGTTGAAGTG+TGG - chr2_1:55038895-55038914 None:intergenic 45.0%
AGGTTCAGTTTGAACGACGA+CGG - chr2_1:55038921-55038940 None:intergenic 45.0%
!! TCCAGTGTCGATGCTTCATA+GGG - chr2_1:55039334-55039353 None:intergenic 45.0%
TCACGTGTTGCGTCAGTATT+AGG + chr2_1:55039407-55039426 Msa0212840:intron 45.0%
! GCACCGACACTTCTAATTGA+AGG - chr2_1:55039506-55039525 None:intergenic 45.0%
CACTTCGAACCTTGACACTT+TGG + chr2_1:55039677-55039696 Msa0212840:intron 45.0%
AAAGGTTGAGCAATTGTGGG+GGG - chr2_1:55039767-55039786 None:intergenic 45.0%
GAAAGGTTGAGCAATTGTGG+GGG - chr2_1:55039768-55039787 None:intergenic 45.0%
CGAAAGGTTGAGCAATTGTG+GGG - chr2_1:55039769-55039788 None:intergenic 45.0%
CCGAAAGGTTGAGCAATTGT+GGG - chr2_1:55039770-55039789 None:intergenic 45.0%
CCCACAATTGCTCAACCTTT+CGG + chr2_1:55039767-55039786 Msa0212840:intron 45.0%
ACCGAAAGGTTGAGCAATTG+TGG - chr2_1:55039771-55039790 None:intergenic 45.0%
ATGGTCCGCAACTACAATTG+TGG - chr2_1:55039945-55039964 None:intergenic 45.0%
!! GAAGTGTTGCCCACTTCTTA+TGG + chr2_1:55039989-55040008 Msa0212840:intron 45.0%
!! TGCAATAAGTGTTGGGTTCG+GGG + chr2_1:55040136-55040155 Msa0212840:intron 45.0%
TGTCCATCAAGCTGAAAGGT+AGG + chr2_1:55040166-55040185 Msa0212840:intron 45.0%
! TGATTCTAGAGGGGTAACCT+TGG + chr2_1:55040288-55040307 Msa0212840:intron 45.0%
GTCATGTGACTGTAAGGTCA+CGG + chr2_1:55040330-55040349 Msa0212840:intron 45.0%
TCATGTGACTGTAAGGTCAC+GGG + chr2_1:55040331-55040350 Msa0212840:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr2_1:55040364-55040383 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr2_1:55040396-55040415 Msa0212840:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr2_1:55040399-55040418 Msa0212840:intron 45.0%
CGGCCCGACTAGAATAAAAA+GGG - chr2_1:55040474-55040493 None:intergenic 45.0%
! CCTTTTTATTCTAGTCGGGC+CGG + chr2_1:55040472-55040491 Msa0212840:intron 45.0%
TGCTACCTTACTGAACCGAA+AGG + chr2_1:55040495-55040514 Msa0212840:intron 45.0%
GCTACCTTACTGAACCGAAA+GGG + chr2_1:55040496-55040515 Msa0212840:intron 45.0%
CAAAGGGCTCATTACCCTTT+CGG - chr2_1:55040647-55040666 None:intergenic 45.0%
AATGAGCCCTTTGGTCATGT+AGG + chr2_1:55040654-55040673 Msa0212840:intron 45.0%
TTTGATTCTGAGCGTAGGCT+TGG + chr2_1:55040738-55040757 Msa0212840:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr2_1:55041452-55041471 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr2_1:55041452-55041471 Msa0212840:intron 45.0%
CTAGAAGACTGTGGACATGA+TGG - chr2_1:55041777-55041796 None:intergenic 45.0%
CATCATGTCCACAGTCTTCT+AGG + chr2_1:55041775-55041794 Msa0212840:intron 45.0%
CTAACCTGCTACCAAGTCAA+AGG + chr2_1:55041879-55041898 Msa0212840:intron 45.0%
! TGGTAGCGCATGTGAATTAG+TGG - chr2_1:55042005-55042024 None:intergenic 45.0%
GAAACTTTAGGTGTTCTGGC+CGG + chr2_1:55042191-55042210 Msa0212840:intron 45.0%
TGCTGCCAGAGTCAATTCTT+GGG + chr2_1:55042459-55042478 Msa0212840:intron 45.0%
TGGATGGGCAAGTTCTATGA+TGG + chr2_1:55042584-55042603 Msa0212840:intron 45.0%
TACGGAAGTTGGCAACCATA+TGG + chr2_1:55042738-55042757 Msa0212840:intron 45.0%
! TGTTTTACCACGAGGTGAGA+AGG + chr2_1:55042817-55042836 Msa0212840:intron 45.0%
GCTGCTGTAGTGTGCTAATA+TGG + chr2_1:55043014-55043033 Msa0212840:intron 45.0%
GCTAAACAGAGGACATTGGA+AGG - chr2_1:55043464-55043483 None:intergenic 45.0%
!! CCGTTTTTCAACTGTTTCCG+AGG + chr2_1:55043636-55043655 Msa0212840:intron 45.0%
CGACGAAGTTCAAATTCCCT+CGG - chr2_1:55043656-55043675 None:intergenic 45.0%
TACCGCATTAGTGCTTGTGT+TGG + chr2_1:55044033-55044052 Msa0212840:intron 45.0%
GTCCAACACAAGCACTAATG+CGG - chr2_1:55044038-55044057 None:intergenic 45.0%
!! GGGTTCAAGAGTGTCCTTAA+AGG - chr2_1:55044375-55044394 None:intergenic 45.0%
GAGGTATAGTCCTTGCAGTT+AGG + chr2_1:55044743-55044762 Msa0212840:intron 45.0%
AAAGCAACCACCGAAAGTTC+TGG + chr2_1:55045149-55045168 Msa0212840:CDS 45.0%
AAGCAACCACCGAAAGTTCT+GGG + chr2_1:55045150-55045169 Msa0212840:CDS 45.0%
AATTCACCCAGAACTTTCGG+TGG - chr2_1:55045159-55045178 None:intergenic 45.0%
!! ACTTGCTTGGTGCCAATTCA+GGG + chr2_1:55045280-55045299 Msa0212840:three_prime_UTR 45.0%
! GTAGTTTGCGACGGAAGTGA+TGG - chr2_1:55038842-55038861 None:intergenic 50.0%
!!! GACGACGGTGTCGTTTTCAT+CGG - chr2_1:55038906-55038925 None:intergenic 50.0%
! GAACCTTCAAGTTCTCACGC+CGG + chr2_1:55038935-55038954 Msa0212840:CDS 50.0%
CACATCAGAGCTCTTCGAGA+GGG - chr2_1:55038999-55039018 None:intergenic 50.0%
ACACATCAGAGCTCTTCGAG+AGG - chr2_1:55039000-55039019 None:intergenic 50.0%
! CTCGAAGAGCTCTGATGTGT+TGG + chr2_1:55039000-55039019 Msa0212840:CDS 50.0%
! AGCTCTGATGTGTTGGCGAA+AGG + chr2_1:55039007-55039026 Msa0212840:CDS 50.0%
TCCTCTATCGATCGTCTCAC+CGG + chr2_1:55039112-55039131 Msa0212840:CDS 50.0%
!! ACCCTATGAAGCATCGACAC+TGG + chr2_1:55039330-55039349 Msa0212840:intron 50.0%
!! GTCCAGTGTCGATGCTTCAT+AGG - chr2_1:55039335-55039354 None:intergenic 50.0%
TTAGGCAGTGACACACGTGT+TGG + chr2_1:55039425-55039444 Msa0212840:intron 50.0%
! AGTGACACACGTGTTGGTGT+TGG + chr2_1:55039431-55039450 Msa0212840:intron 50.0%
!! TAGAAGTGTCGGTGCTACAG+AGG + chr2_1:55039511-55039530 Msa0212840:intron 50.0%
GCGATACCTCCTCAGTAGTA+GGG + chr2_1:55039533-55039552 Msa0212840:intron 50.0%
TAGCAACCCTACTACTGAGG+AGG - chr2_1:55039542-55039561 None:intergenic 50.0%
AGTAGTAGGGTTGCTAGCGA+TGG + chr2_1:55039546-55039565 Msa0212840:intron 50.0%
TTGCTAGCGATGGTGTTTGG+TGG + chr2_1:55039556-55039575 Msa0212840:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr2_1:55040308-55040327 None:intergenic 50.0%
CCGGCCCGACTAGAATAAAA+AGG - chr2_1:55040475-55040494 None:intergenic 50.0%
TCGGTTCAGTAAGGTAGCAC+CGG - chr2_1:55040494-55040513 None:intergenic 50.0%
CAAAGGGCCCATTACCCTTT+CGG - chr2_1:55040513-55040532 None:intergenic 50.0%
ATTACCCTTTCGGCCCAGTA+AGG - chr2_1:55040637-55040656 None:intergenic 50.0%
CGAAAGGGTAATGAGCCCTT+TGG + chr2_1:55040645-55040664 Msa0212840:intron 50.0%
GTGCTGCCAGAGTCAATTCT+TGG + chr2_1:55042458-55042477 Msa0212840:intron 50.0%
TACTCGTGGCAAGTGCATGT+GGG - chr2_1:55044396-55044415 None:intergenic 50.0%
TGCGGCCCTAAGAGCAAATT+TGG - chr2_1:55044656-55044675 None:intergenic 50.0%
!! CACTTGCTTGGTGCCAATTC+AGG + chr2_1:55045279-55045298 Msa0212840:three_prime_UTR 50.0%
GTTTGCGACGGAAGTGATGG+TGG - chr2_1:55038839-55038858 None:intergenic 55.0%
! AGTGTGGTGAGTGTCGCTAG+AGG - chr2_1:55038879-55038898 None:intergenic 55.0%
GGGTTCAGAACTGTTCTCGC+CGG - chr2_1:55038957-55038976 None:intergenic 55.0%
TCCGGTGAGACGATCGATAG+AGG - chr2_1:55039116-55039135 None:intergenic 55.0%
TCTATCGATCGTCTCACCGG+AGG + chr2_1:55039115-55039134 Msa0212840:CDS 55.0%
GGCGATACCTCCTCAGTAGT+AGG + chr2_1:55039532-55039551 Msa0212840:intron 55.0%
CGCTAGCAACCCTACTACTG+AGG - chr2_1:55039545-55039564 None:intergenic 55.0%
GGGTTGCTAGCGATGGTGTT+TGG + chr2_1:55039553-55039572 Msa0212840:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr2_1:55040343-55040362 Msa0212840:intron 55.0%
!! CGAAAGGGTAATGGGCCCTT+TGG + chr2_1:55040511-55040530 Msa0212840:intron 55.0%
AATGGGCCCTTTGGCCATGT+AGG + chr2_1:55040520-55040539 Msa0212840:intron 55.0%
TGCTACCTTACTGGGCCGAA+AGG + chr2_1:55040629-55040648 Msa0212840:intron 55.0%
GCTACCTTACTGGGCCGAAA+GGG + chr2_1:55040630-55040649 Msa0212840:intron 55.0%
GATTCAGCCTTCTCACCTCG+TGG - chr2_1:55042827-55042846 None:intergenic 55.0%
AGAGGACATTGGAAGGGGAG+GGG - chr2_1:55043457-55043476 None:intergenic 55.0%
CAGAGGACATTGGAAGGGGA+GGG - chr2_1:55043458-55043477 None:intergenic 55.0%
ACAGAGGACATTGGAAGGGG+AGG - chr2_1:55043459-55043478 None:intergenic 55.0%
ACTCGTGGCAAGTGCATGTG+GGG - chr2_1:55044395-55044414 None:intergenic 55.0%
GTACTCGTGGCAAGTGCATG+TGG - chr2_1:55044397-55044416 None:intergenic 55.0%
TCGCCGGCGTGAGAACTTGA+AGG - chr2_1:55038941-55038960 None:intergenic 60.0%
TCTGAACCCGATAACGCCGC+CGG + chr2_1:55038968-55038987 Msa0212840:CDS 60.0%
GCTCTTCGAGAGGGAATCCC+CGG - chr2_1:55038990-55039009 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr2_1:55040297-55040316 Msa0212840:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr2_1:55040412-55040431 Msa0212840:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG - chr2_1:55040439-55040458 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG - chr2_1:55040440-55040459 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + chr2_1:55040444-55040463 Msa0212840:intron 60.0%
!! TCAGGCCGGTGCTACCTTAC+TGG + chr2_1:55040620-55040639 Msa0212840:intron 60.0%
!! CAGGCCGGTGCTACCTTACT+GGG + chr2_1:55040621-55040640 Msa0212840:intron 60.0%
TCGGCCCAGTAAGGTAGCAC+CGG - chr2_1:55040628-55040647 None:intergenic 60.0%
GAGGACATTGGAAGGGGAGG+GGG - chr2_1:55043456-55043475 None:intergenic 60.0%
! GGGCTCAAGGGTGCATTGCA+TGG - chr2_1:55045230-55045249 None:intergenic 60.0%
CTGAACCCGATAACGCCGCC+GGG + chr2_1:55038969-55038988 Msa0212840:CDS 65.0%
TGAACCCGATAACGCCGCCG+GGG + chr2_1:55038970-55038989 Msa0212840:CDS 65.0%
GAATCCCCGGCGGCGTTATC+GGG - chr2_1:55038977-55038996 None:intergenic 65.0%
GGAATCCCCGGCGGCGTTAT+CGG - chr2_1:55038978-55038997 None:intergenic 65.0%
CTTCGAGAGGGAATCCCCGG+CGG - chr2_1:55038987-55039006 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr2_1:55040414-55040433 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr2_1:55040427-55040446 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr2_1:55040428-55040447 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr2_1:55040427-55040446 Msa0212840:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr2_1:55040428-55040447 Msa0212840:intron 65.0%
TGCGGGAGCTTCAGTGCACC+GGG + chr2_1:55040445-55040464 Msa0212840:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG - chr2_1:55040429-55040448 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr2_1:55040433-55040452 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr2_1:55040434-55040453 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 55038735 55045495 55038735 ID=Msa0212840;Name=Msa0212840
chr2_1 mRNA 55038735 55045495 55038735 ID=Msa0212840-mRNA-1;Parent=Msa0212840;Name=Msa0212840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=134|1|1|1|0.5|0.66|3|320|153
chr2_1 exon 55038735 55039136 55038735 ID=Msa0212840-mRNA-1:exon:15291;Parent=Msa0212840-mRNA-1
chr2_1 exon 55043188 55043352 55043188 ID=Msa0212840-mRNA-1:exon:15292;Parent=Msa0212840-mRNA-1
chr2_1 exon 55045147 55045495 55045147 ID=Msa0212840-mRNA-1:exon:15293;Parent=Msa0212840-mRNA-1
chr2_1 five_prime_UTR 55038735 55038868 55038735 ID=Msa0212840-mRNA-1:five_prime_utr;Parent=Msa0212840-mRNA-1
chr2_1 CDS 55038869 55039136 55038869 ID=Msa0212840-mRNA-1:cds;Parent=Msa0212840-mRNA-1
chr2_1 CDS 55043188 55043352 55043188 ID=Msa0212840-mRNA-1:cds;Parent=Msa0212840-mRNA-1
chr2_1 CDS 55045147 55045175 55045147 ID=Msa0212840-mRNA-1:cds;Parent=Msa0212840-mRNA-1
chr2_1 three_prime_UTR 55045176 55045495 55045176 ID=Msa0212840-mRNA-1:three_prime_utr;Parent=Msa0212840-mRNA-1
Gene Sequence

>Msa0212840

ATGGAAGCCTCTAGCGACACTCACCACACTTCAACCGATGAAAACGACACCGTCGTCGTTCAAACTGAACCTTCAAGTTCTCACGCCGGCGAGAACAGTTCTGAACCCGATAACGCCGCCGGGGATTCCCTCTCGAAGAGCTCTGATGTGTTGGCGAAAGGCTTGTCCTCGATTCTCTCTTCCGTAATTACGGATTTCGATTTCAGAGCTCAACAAACTCTCATCAGCCAAAATCATCTCTCTTCCTCTATCGATCGTCTCACCGGAGAACTTGATCAGTTACTCGAAGATGCACCCTTGCCATTCATAATGCAACATGCTGCTAAGATATCTAGTGTTAGGAAAAGAGTTTCATCACTGAATTCACTTCTAAAATCCATACAAGGGCGGATTGATAATATAGACCGTATTATATCTACTGGCACTACTCATGAGAAAGCAACCACCGAAAGTTCTGGGTGA
Protein sequence

>Msa0212840

MEASSDTHHTSTDENDTVVVQTEPSSSHAGENSSEPDNAAGDSLSKSSDVLAKGLSSILSSVITDFDFRAQQTLISQNHLSSSIDRLTGELDQLLEDAPLPFIMQHAAKISSVRKRVSSLNSLLKSIQGRIDNIDRIISTGTTHEKATTESSG*