Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363050 | XP_003600978.1 | 93.625 | 251 | 16 | 0 | 1 | 251 | 1 | 251 | 1.16e-168 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363050 | G7J2C4 | 93.625 | 251 | 16 | 0 | 1 | 251 | 1 | 251 | 5.53e-169 | 478 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0212840 | Msa0363050 | -0.809826 | 1.561967e-50 | -8.615850e-47 |
| Msa0363050 | Msa0369460 | 0.917490 | 4.984731e-86 | -8.615850e-47 |
| Msa0363050 | Msa0417070 | 0.804372 | 2.229484e-49 | -8.615850e-47 |
| Msa0363050 | Msa0549910 | 0.803027 | 4.241055e-49 | -8.615850e-47 |
| Msa0363050 | Msa0626410 | 0.806388 | 8.427884e-50 | -8.615850e-47 |
| Msa0363050 | Msa0960640 | 0.802765 | 4.803654e-49 | -8.615850e-47 |
| Msa0363050 | Msa1216740 | -0.803699 | 3.077535e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363050 | MtrunA17_Chr3g0114091 | 93.625 | 251 | 16 | 0 | 1 | 251 | 1 | 251 | 1.07e-172 | 478 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363050 | AT2G40316.1 | 54.008 | 237 | 104 | 1 | 13 | 249 | 10 | 241 | 1.82e-95 | 282 |
| Msa0363050 | AT2G40316.3 | 54.598 | 174 | 79 | 0 | 76 | 249 | 6 | 179 | 2.93e-69 | 213 |
| Msa0363050 | AT2G40316.2 | 51.149 | 174 | 66 | 1 | 76 | 249 | 6 | 160 | 4.55e-58 | 184 |
Find 76 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGACCACCCTTTGGTTTC+AGG | 0.123827 | 3_1:+55123151 | Msa0363050:CDS |
| AAAATTGACATTGATGTTAT+TGG | 0.136346 | 3_1:+55126052 | Msa0363050:CDS |
| TTCTTATACTTGCTCTGTTT+TGG | 0.255196 | 3_1:+55128244 | Msa0363050:three_prime_UTR |
| AAGATGAGGCACGTGCGTTC+TGG | 0.294383 | 3_1:-55122710 | None:intergenic |
| TAAATGACACAAATGAAAAT+AGG | 0.301556 | 3_1:-55128186 | None:intergenic |
| CATGTCCATGGGAGTGGATG+GGG | 0.360620 | 3_1:+55127910 | Msa0363050:CDS |
| CCAGTAGATAAGCAGCAAAA+AGG | 0.364307 | 3_1:-55128065 | None:intergenic |
| CCACAAACCCTGGAGAGATC+GGG | 0.385326 | 3_1:+55126762 | Msa0363050:CDS |
| CCCGATCTCTCCAGGGTTTG+TGG | 0.392583 | 3_1:-55126762 | None:intergenic |
| CTCCAACATGTGCTGACTGC+TGG | 0.419170 | 3_1:+55124203 | Msa0363050:CDS |
| CCTGAAACCAAAGGGTGGTC+TGG | 0.420634 | 3_1:-55123151 | None:intergenic |
| TTTGCTGCTTATCTACTGGC+TGG | 0.434836 | 3_1:+55128069 | Msa0363050:CDS |
| CCATGAGGGAAGTTACGAAT+TGG | 0.436669 | 3_1:-55122848 | None:intergenic |
| ACCACAAACCCTGGAGAGAT+CGG | 0.439907 | 3_1:+55126761 | Msa0363050:CDS |
| CCACAAATGACTAAATGAAA+AGG | 0.440323 | 3_1:-55128290 | None:intergenic |
| CAGTGAACCAGACCACCCTT+TGG | 0.454271 | 3_1:+55123144 | Msa0363050:CDS |
| AGGCTATCTGTGACGGAAGA+AGG | 0.456006 | 3_1:-55122594 | None:intergenic |
| TACATGTCCATGGGAGTGGA+TGG | 0.457765 | 3_1:+55127908 | Msa0363050:CDS |
| TCAAATAGTTGTGCTGTGTT+TGG | 0.458298 | 3_1:+55122654 | Msa0363050:five_prime_UTR |
| TCTGTGCTTTGCAATGTAAA+TGG | 0.473682 | 3_1:+55126641 | Msa0363050:CDS |
| ACATGTCCATGGGAGTGGAT+GGG | 0.476299 | 3_1:+55127909 | Msa0363050:CDS |
| GTTTGAGAAGCGTGAGATTG+AGG | 0.478036 | 3_1:-55122614 | None:intergenic |
| GCTAGCAATGCCATTGTTGA+AGG | 0.478835 | 3_1:-55122686 | None:intergenic |
| CCAGAGAACAGTTGTACTTA+AGG | 0.488593 | 3_1:-55126613 | None:intergenic |
| GTTACGAATTGGAGAAGAGA+GGG | 0.488752 | 3_1:-55122837 | None:intergenic |
| CACAAATGACTAAATGAAAA+GGG | 0.499053 | 3_1:-55128289 | None:intergenic |
| CATGGCATCCTCAGCGAAGA+CGG | 0.515617 | 3_1:+55122866 | Msa0363050:CDS |
| CCTTAAGTACAACTGTTCTC+TGG | 0.522984 | 3_1:+55126613 | Msa0363050:CDS |
| CCCATGGACATGTACAATCA+TGG | 0.523533 | 3_1:-55127899 | None:intergenic |
| ACAGAGCTAAAACATCCATC+TGG | 0.525980 | 3_1:+55127871 | Msa0363050:CDS |
| TCCAACATGTGCTGACTGCT+GGG | 0.526133 | 3_1:+55124204 | Msa0363050:CDS |
| AGAAGATGAAAGTACGAAAA+CGG | 0.526403 | 3_1:-55122744 | None:intergenic |
| ATTGTACATGTCCATGGGAG+TGG | 0.526718 | 3_1:+55127904 | Msa0363050:CDS |
| TCTGTGTGTGCGCGTTCAGA+AGG | 0.528283 | 3_1:-55122551 | None:intergenic |
| ATGTCCATGGGAGTGGATGG+GGG | 0.532783 | 3_1:+55127911 | Msa0363050:CDS |
| GTGTTTCTACCCTTCAACAA+TGG | 0.535164 | 3_1:+55122676 | Msa0363050:exon |
| TATTTCTTCCTCAAGATTCG+CGG | 0.535751 | 3_1:+55128105 | Msa0363050:CDS |
| TGTGGAGGGCCAACACGTTG+TGG | 0.546123 | 3_1:+55125066 | Msa0363050:CDS |
| AAAACTGAATTCACAAGTTG+TGG | 0.552467 | 3_1:-55122786 | None:intergenic |
| TTGTTTGAGCAGCTTTGCGA+TGG | 0.557345 | 3_1:+55124160 | Msa0363050:intron |
| ATGGCATCCTCAGCGAAGAC+GGG | 0.557560 | 3_1:+55122867 | Msa0363050:CDS |
| TATCATGTGTGCTCAGCCAT+AGG | 0.557883 | 3_1:+55126019 | Msa0363050:CDS |
| CCAATTCGTAACTTCCCTCA+TGG | 0.560451 | 3_1:+55122848 | Msa0363050:CDS |
| GCCATGATTGTACATGTCCA+TGG | 0.564935 | 3_1:+55127898 | Msa0363050:CDS |
| GTGTGCTCAGCCATAGGACG+TGG | 0.569694 | 3_1:+55126025 | Msa0363050:CDS |
| CTTCGCTGAGGATGCCATGA+GGG | 0.575992 | 3_1:-55122862 | None:intergenic |
| CAGCAGTCAGCACATGTTGG+AGG | 0.578538 | 3_1:-55124202 | None:intergenic |
| TACATTGCAAAGCACAGACA+CGG | 0.580249 | 3_1:-55126636 | None:intergenic |
| GGAGCCAACCTGAAACCAAA+GGG | 0.581318 | 3_1:-55123159 | None:intergenic |
| AGGGCCAACACGTTGTGGGA+TGG | 0.582295 | 3_1:+55125071 | Msa0363050:CDS |
| CTTACAGGGACCACAAACCC+TGG | 0.585984 | 3_1:+55126752 | Msa0363050:intron |
| AGTTACGAATTGGAGAAGAG+AGG | 0.586538 | 3_1:-55122838 | None:intergenic |
| CACAAACCCTGGAGAGATCG+GGG | 0.586622 | 3_1:+55126763 | Msa0363050:CDS |
| CTGAATTCACAAGTTGTGGT+AGG | 0.587354 | 3_1:-55122782 | None:intergenic |
| ACCCAGCAGTCAGCACATGT+TGG | 0.593984 | 3_1:-55124205 | None:intergenic |
| ACAATCATGGCACAACCAGA+TGG | 0.603224 | 3_1:-55127886 | None:intergenic |
| AGCAGTCAGCACATGTTGGA+GGG | 0.605148 | 3_1:-55124201 | None:intergenic |
| CTCGTGTCAAACAACATTGG+AGG | 0.605765 | 3_1:+55125105 | Msa0363050:CDS |
| GAGATTGAGGCTATCTGTGA+CGG | 0.606655 | 3_1:-55122601 | None:intergenic |
| TGGAGCCAACCTGAAACCAA+AGG | 0.609932 | 3_1:-55123160 | None:intergenic |
| GTGGAGGGCCAACACGTTGT+GGG | 0.610605 | 3_1:+55125067 | Msa0363050:CDS |
| CGGTGAAGAGAGTGAAGATG+AGG | 0.618284 | 3_1:-55122724 | None:intergenic |
| CACTCCATCCCACAACGTGT+TGG | 0.622184 | 3_1:-55125075 | None:intergenic |
| CCATGATTGTACATGTCCAT+GGG | 0.624169 | 3_1:+55127899 | Msa0363050:CDS |
| TGTATTCAATAGGAATGTGG+AGG | 0.625226 | 3_1:+55125051 | Msa0363050:intron |
| CTTCTGTACCGCGAATCTTG+AGG | 0.628736 | 3_1:-55128113 | None:intergenic |
| CTAGCAATGCCATTGTTGAA+GGG | 0.629693 | 3_1:-55122685 | None:intergenic |
| GCACTCGTGTCAAACAACAT+TGG | 0.641042 | 3_1:+55125102 | Msa0363050:CDS |
| ACACGTTGTGGGATGGAGTG+CGG | 0.645653 | 3_1:+55125078 | Msa0363050:CDS |
| TTAACAATGATACCAACGTG+TGG | 0.647825 | 3_1:-55126575 | None:intergenic |
| GTATGTATTCAATAGGAATG+TGG | 0.652755 | 3_1:+55125048 | Msa0363050:intron |
| GTATTCAATAGGAATGTGGA+GGG | 0.663898 | 3_1:+55125052 | Msa0363050:intron |
| GAGTGGACCCGTCTTCGCTG+AGG | 0.676771 | 3_1:-55122874 | None:intergenic |
| GCCAACCTGAAACCAAAGGG+TGG | 0.680639 | 3_1:-55123156 | None:intergenic |
| TCTTCGCTGAGGATGCCATG+AGG | 0.698946 | 3_1:-55122863 | None:intergenic |
| ACAAACCCTGGAGAGATCGG+GGG | 0.710177 | 3_1:+55126764 | Msa0363050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATGATAATAAAAATGT+CGG | + | chr3_1:55127705-55127724 | Msa0363050:intron | 10.0% |
| !!! | TCATTTTCTAACATTATTAT+TGG | - | chr3_1:55123308-55123327 | None:intergenic | 15.0% |
| !!! | ATTCAAATTAGTTCTATATT+AGG | + | chr3_1:55123780-55123799 | Msa0363050:intron | 15.0% |
| !!! | TTTAAAATTTGTAAATCTAG+TGG | + | chr3_1:55123808-55123827 | Msa0363050:intron | 15.0% |
| !! | AATTCAATTATAGATCAATT+TGG | - | chr3_1:55124129-55124148 | None:intergenic | 15.0% |
| !! | ATTTCATATCTATAAAATAC+AGG | - | chr3_1:55124314-55124333 | None:intergenic | 15.0% |
| !!! | TTGATCATTATTTTCTAAAA+GGG | - | chr3_1:55125592-55125611 | None:intergenic | 15.0% |
| !!! | TTTGATCATTATTTTCTAAA+AGG | - | chr3_1:55125593-55125612 | None:intergenic | 15.0% |
| !! | AATACATTAATACATGATAA+GGG | - | chr3_1:55126231-55126250 | None:intergenic | 15.0% |
| !! | AAATACATTAATACATGATA+AGG | - | chr3_1:55126232-55126251 | None:intergenic | 15.0% |
| !! | AAAATAGCTGAAAAAAAAAA+AGG | - | chr3_1:55127244-55127263 | None:intergenic | 15.0% |
| !!! | ATAGGATTATTTCATTGATT+TGG | + | chr3_1:55122960-55122979 | Msa0363050:intron | 20.0% |
| !!! | CATTGATTTGGAATTAATTT+AGG | + | chr3_1:55122972-55122991 | Msa0363050:intron | 20.0% |
| !!! | AATCTTTTTTTTTTCGTGTT+TGG | + | chr3_1:55123448-55123467 | Msa0363050:intron | 20.0% |
| !!! | ATCTTTTTTTTTTCGTGTTT+GGG | + | chr3_1:55123449-55123468 | Msa0363050:intron | 20.0% |
| !!! | ATAAAACAAGTTTTGTCATA+TGG | - | chr3_1:55123479-55123498 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTGTTGATGATTA+AGG | + | chr3_1:55123499-55123518 | Msa0363050:intron | 20.0% |
| !!! | CTCTAGAATATAATAAGAAA+GGG | - | chr3_1:55123884-55123903 | None:intergenic | 20.0% |
| !!! | TCTCTAGAATATAATAAGAA+AGG | - | chr3_1:55123885-55123904 | None:intergenic | 20.0% |
| !!! | TATTCTAGAGATTAATAAGT+TGG | + | chr3_1:55123894-55123913 | Msa0363050:intron | 20.0% |
| !!! | TAATAAGTTGGATAGAAATA+TGG | + | chr3_1:55123906-55123925 | Msa0363050:intron | 20.0% |
| !! | GAAATTCATGATGTTATAAA+AGG | + | chr3_1:55124410-55124429 | Msa0363050:intron | 20.0% |
| !!! | ATTCCAATCAACTTTATTTA+TGG | - | chr3_1:55124826-55124845 | None:intergenic | 20.0% |
| !! | GTAGCATTACTTATATAAAA+AGG | - | chr3_1:55124906-55124925 | None:intergenic | 20.0% |
| !!! | TTAATTGCATTTTTCTTTGA+CGG | - | chr3_1:55125388-55125407 | None:intergenic | 20.0% |
| !!! | AACAAAATTTGACTTCATTT+GGG | - | chr3_1:55125940-55125959 | None:intergenic | 20.0% |
| !!! | AAACAAAATTTGACTTCATT+TGG | - | chr3_1:55125941-55125960 | None:intergenic | 20.0% |
| !!! | TAACATCAATGTCAATTTTT+GGG | - | chr3_1:55126051-55126070 | None:intergenic | 20.0% |
| !!! | ATAACATCAATGTCAATTTT+TGG | - | chr3_1:55126052-55126071 | None:intergenic | 20.0% |
| !! | AAAATTGACATTGATGTTAT+TGG | + | chr3_1:55126052-55126071 | Msa0363050:CDS | 20.0% |
| !! | AATTATCTGTTTATGATGTT+TGG | + | chr3_1:55126087-55126106 | Msa0363050:intron | 20.0% |
| !! | ATTATCTGTTTATGATGTTT+GGG | + | chr3_1:55126088-55126107 | Msa0363050:intron | 20.0% |
| !!! | ATTGAATTTGTCAGTTATTT+TGG | + | chr3_1:55126364-55126383 | Msa0363050:intron | 20.0% |
| !!! | TTGAATTTGTCAGTTATTTT+GGG | + | chr3_1:55126365-55126384 | Msa0363050:intron | 20.0% |
| !!! | TTGTTTGTTATTTTATGATG+TGG | + | chr3_1:55126839-55126858 | Msa0363050:intron | 20.0% |
| !!! | GTTACATTTGTTGAAAATAT+AGG | + | chr3_1:55126942-55126961 | Msa0363050:intron | 20.0% |
| !! | AACTGACAATAGTAAATAAA+AGG | - | chr3_1:55127128-55127147 | None:intergenic | 20.0% |
| !!! | TCTTTTCTGCAAAATAATTT+AGG | + | chr3_1:55127179-55127198 | Msa0363050:intron | 20.0% |
| !! | TTGACTATTAATTAATGACT+GGG | - | chr3_1:55127398-55127417 | None:intergenic | 20.0% |
| !! | TTTGACTATTAATTAATGAC+TGG | - | chr3_1:55127399-55127418 | None:intergenic | 20.0% |
| !!! | TTTTTCATTTTAAACAAACG+TGG | - | chr3_1:55127634-55127653 | None:intergenic | 20.0% |
| !!! | TATGAATTTAAAACCAAACA+CGG | + | chr3_1:55127768-55127787 | Msa0363050:intron | 20.0% |
| !! | ATTAGTAATTTAGCCAAATT+AGG | - | chr3_1:55128010-55128029 | None:intergenic | 20.0% |
| !! | TAAATGACACAAATGAAAAT+AGG | - | chr3_1:55128189-55128208 | None:intergenic | 20.0% |
| !!! | TATTTTCATTTGTGTCATTT+AGG | + | chr3_1:55128188-55128207 | Msa0363050:CDS | 20.0% |
| ! | TCAAGCATAGAAACATTTAT+AGG | + | chr3_1:55122942-55122961 | Msa0363050:intron | 25.0% |
| !! | AATTTAGGACTAAACTCAAT+TGG | + | chr3_1:55122987-55123006 | Msa0363050:intron | 25.0% |
| ! | CTTAATCAAGAATTGATGAA+TGG | + | chr3_1:55123012-55123031 | Msa0363050:intron | 25.0% |
| !! | AACTTTTCTATAAAGACTTG+CGG | - | chr3_1:55123759-55123778 | None:intergenic | 25.0% |
| !! | AATATAATAAGAAAGGGTGT+TGG | - | chr3_1:55123878-55123897 | None:intergenic | 25.0% |
| !!! | GCACAAAATTTGGTTTTATA+AGG | + | chr3_1:55124077-55124096 | Msa0363050:intron | 25.0% |
| ! | AACAGATTCTTGACAATTAT+AGG | - | chr3_1:55124280-55124299 | None:intergenic | 25.0% |
| ! | GGAATAGTTAATGAAATTAC+CGG | + | chr3_1:55124431-55124450 | Msa0363050:intron | 25.0% |
| !! | CAAATATCTATCTAAAGTTC+CGG | - | chr3_1:55124453-55124472 | None:intergenic | 25.0% |
| ! | AACCCATTAAATAACTGTTA+AGG | + | chr3_1:55124693-55124712 | Msa0363050:intron | 25.0% |
| ! | CACCTTAACAGTTATTTAAT+GGG | - | chr3_1:55124698-55124717 | None:intergenic | 25.0% |
| ! | ACACCTTAACAGTTATTTAA+TGG | - | chr3_1:55124699-55124718 | None:intergenic | 25.0% |
| !! | GATCCATAAATAAAGTTGAT+TGG | + | chr3_1:55124820-55124839 | Msa0363050:intron | 25.0% |
| !!! | TAGTATTGGATAGGATTTTA+AGG | + | chr3_1:55124956-55124975 | Msa0363050:intron | 25.0% |
| ! | TATCACTGTATGTATTCAAT+AGG | + | chr3_1:55125041-55125060 | Msa0363050:intron | 25.0% |
| ! | AGTACTGTTAAATACGTAAA+AGG | + | chr3_1:55125518-55125537 | Msa0363050:intron | 25.0% |
| ! | AATGAATAAAACTTGCAGAA+AGG | - | chr3_1:55125619-55125638 | None:intergenic | 25.0% |
| ! | TTAATATGTGTGAAATGACT+AGG | - | chr3_1:55126163-55126182 | None:intergenic | 25.0% |
| ! | AAAGTAGAAGATGTTGAATT+GGG | + | chr3_1:55126277-55126296 | Msa0363050:intron | 25.0% |
| ! | ATGCAAGTAGTATTAAATAG+AGG | + | chr3_1:55126304-55126323 | Msa0363050:intron | 25.0% |
| !!! | TTATTTGGTTCAACTGATTT+TGG | + | chr3_1:55126482-55126501 | Msa0363050:intron | 25.0% |
| ! | TATGAACTAGAGTAAATGTA+TGG | + | chr3_1:55126518-55126537 | Msa0363050:intron | 25.0% |
| ! | TGGATAAAATAACTAAAGCA+GGG | - | chr3_1:55126875-55126894 | None:intergenic | 25.0% |
| ! | AATATAGGAAATGTTGAACT+TGG | + | chr3_1:55126957-55126976 | Msa0363050:intron | 25.0% |
| ! | TCAACATGAATAGTTGAATA+GGG | - | chr3_1:55127347-55127366 | None:intergenic | 25.0% |
| ! | ATCAACATGAATAGTTGAAT+AGG | - | chr3_1:55127348-55127367 | None:intergenic | 25.0% |
| ! | TAAGATGTATAATGATGCAA+GGG | - | chr3_1:55127683-55127702 | None:intergenic | 25.0% |
| ! | ATAAGATGTATAATGATGCA+AGG | - | chr3_1:55127684-55127703 | None:intergenic | 25.0% |
| ! | AGGAAAAAATTGAAAACAGA+AGG | + | chr3_1:55127730-55127749 | Msa0363050:intron | 25.0% |
| ! | GGAAAAAATTGAAAACAGAA+GGG | + | chr3_1:55127731-55127750 | Msa0363050:intron | 25.0% |
| !! | ATGAATTTAAAACCAAACAC+GGG | + | chr3_1:55127769-55127788 | Msa0363050:intron | 25.0% |
| ! | CACAAATGACTAAATGAAAA+GGG | - | chr3_1:55128292-55128311 | None:intergenic | 25.0% |
| ! | AGAAGATGAAAGTACGAAAA+CGG | - | chr3_1:55122747-55122766 | None:intergenic | 30.0% |
| AAAACTGAATTCACAAGTTG+TGG | - | chr3_1:55122789-55122808 | None:intergenic | 30.0% | |
| TAGATACTGTGCTAATTATG+TGG | + | chr3_1:55123070-55123089 | Msa0363050:intron | 30.0% | |
| !! | TCATTTTTGTGTGTGTTTGT+AGG | + | chr3_1:55123108-55123127 | Msa0363050:intron | 30.0% |
| ! | TTTAACTTAGAAGCCATCAT+AGG | - | chr3_1:55123547-55123566 | None:intergenic | 30.0% |
| TGTGACTAGCAATAAATAGA+CGG | + | chr3_1:55124045-55124064 | Msa0363050:intron | 30.0% | |
| CGGAACTTTAGATAGATATT+TGG | + | chr3_1:55124451-55124470 | Msa0363050:intron | 30.0% | |
| ! | TTTTAGCCCTACAATTATTC+AGG | - | chr3_1:55124573-55124592 | None:intergenic | 30.0% |
| TTAAGCTTCGTATGTACAAT+TGG | - | chr3_1:55124630-55124649 | None:intergenic | 30.0% | |
| ! | GACAATTAATTAGTCTAGAC+TGG | + | chr3_1:55124875-55124894 | Msa0363050:intron | 30.0% |
| ! | AATTAATTAGTCTAGACTGG+TGG | + | chr3_1:55124878-55124897 | Msa0363050:intron | 30.0% |
| CACATCAGTGATAAATAACA+GGG | + | chr3_1:55124931-55124950 | Msa0363050:intron | 30.0% | |
| ACATCAGTGATAAATAACAG+GGG | + | chr3_1:55124932-55124951 | Msa0363050:intron | 30.0% | |
| GTATGTATTCAATAGGAATG+TGG | + | chr3_1:55125048-55125067 | Msa0363050:intron | 30.0% | |
| ACATCAGAAATTTCATACCA+AGG | - | chr3_1:55125325-55125344 | None:intergenic | 30.0% | |
| !!! | TTGCTTTTAGTTTCTGTTTC+TGG | + | chr3_1:55125416-55125435 | Msa0363050:intron | 30.0% |
| TACGTATTTAACAGTACTTC+AGG | - | chr3_1:55125516-55125535 | None:intergenic | 30.0% | |
| ATTTCATATGACAAGATCAG+TGG | - | chr3_1:55125685-55125704 | None:intergenic | 30.0% | |
| ATAGTAATATGCTAGACTAC+AGG | - | chr3_1:55125709-55125728 | None:intergenic | 30.0% | |
| !! | GTGTATAATGGACTTATTAG+AGG | + | chr3_1:55125765-55125784 | Msa0363050:intron | 30.0% |
| !! | AGTCTTGTTCATCATCAATT+GGG | + | chr3_1:55125847-55125866 | Msa0363050:intron | 30.0% |
| AGTTCAAAGAAATACGAACT+TGG | + | chr3_1:55125879-55125898 | Msa0363050:intron | 30.0% | |
| TATTTCTCAGTGTGAAGAAT+AGG | + | chr3_1:55125960-55125979 | Msa0363050:intron | 30.0% | |
| CATCTTCTACTTTGCATTTA+TGG | - | chr3_1:55126270-55126289 | None:intergenic | 30.0% | |
| CAAAGTAGAAGATGTTGAAT+TGG | + | chr3_1:55126276-55126295 | Msa0363050:intron | 30.0% | |
| TGCACTGAAAATTAACACAA+CGG | - | chr3_1:55126420-55126439 | None:intergenic | 30.0% | |
| ! | TAATTTTCAGTGCACCATTT+TGG | + | chr3_1:55126426-55126445 | Msa0363050:intron | 30.0% |
| ATAATGCATAACGACATACA+AGG | - | chr3_1:55126466-55126485 | None:intergenic | 30.0% | |
| GTATGTCGTTATGCATTATT+TGG | + | chr3_1:55126467-55126486 | Msa0363050:intron | 30.0% | |
| ! | TGGTTTCAATTTTATCCTGA+TGG | + | chr3_1:55126538-55126557 | Msa0363050:intron | 30.0% |
| ATGTAAATGGTGTACAAGTA+AGG | + | chr3_1:55126654-55126673 | Msa0363050:intron | 30.0% | |
| GAACATTATAGAACTAATGC+TGG | + | chr3_1:55126694-55126713 | Msa0363050:intron | 30.0% | |
| ATTATCAATCTTCTGCTTAC+AGG | + | chr3_1:55126737-55126756 | Msa0363050:intron | 30.0% | |
| TTATCAATCTTCTGCTTACA+GGG | + | chr3_1:55126738-55126757 | Msa0363050:intron | 30.0% | |
| ATTATGTGAGTACCTGTTAT+CGG | + | chr3_1:55126793-55126812 | Msa0363050:intron | 30.0% | |
| ATGAAAAAAATCCCGATAAC+AGG | - | chr3_1:55126808-55126827 | None:intergenic | 30.0% | |
| GTGGATAAAATAACTAAAGC+AGG | - | chr3_1:55126876-55126895 | None:intergenic | 30.0% | |
| TAAGAAACATGTACTACAAG+TGG | - | chr3_1:55126895-55126914 | None:intergenic | 30.0% | |
| ! | CTACTCCTTTAGATTACTTT+TGG | + | chr3_1:55127024-55127043 | Msa0363050:intron | 30.0% |
| AGCTTCCAAAAGTAATCTAA+AGG | - | chr3_1:55127032-55127051 | None:intergenic | 30.0% | |
| !! | CAGAAAAGAGAGAGTATTAT+AGG | - | chr3_1:55127168-55127187 | None:intergenic | 30.0% |
| !! | AACCATTTTTGCTCAAAATG+AGG | + | chr3_1:55127559-55127578 | Msa0363050:intron | 30.0% |
| ! | TTCCTCATTTTGAGCAAAAA+TGG | - | chr3_1:55127564-55127583 | None:intergenic | 30.0% |
| ! | TGATAATAAAAATGTCGGCT+AGG | + | chr3_1:55127710-55127729 | Msa0363050:intron | 30.0% |
| ! | TTTACAAAATTCAAAGTGCC+AGG | - | chr3_1:55127982-55128001 | None:intergenic | 30.0% |
| ! | TGGCACTTTGAATTTTGTAA+AGG | + | chr3_1:55127981-55128000 | Msa0363050:intron | 30.0% |
| ! | GGCACTTTGAATTTTGTAAA+GGG | + | chr3_1:55127982-55128001 | Msa0363050:intron | 30.0% |
| TTTGTAAAGGGTTCCTAATT+TGG | + | chr3_1:55127994-55128013 | Msa0363050:intron | 30.0% | |
| ! | CTTCATGTCTTTTTCTCTTA+GGG | + | chr3_1:55128152-55128171 | Msa0363050:CDS | 30.0% |
| ! | TTCATGTCTTTTTCTCTTAG+GGG | + | chr3_1:55128153-55128172 | Msa0363050:CDS | 30.0% |
| ! | TTCTTATACTTGCTCTGTTT+TGG | + | chr3_1:55128244-55128263 | Msa0363050:three_prime_UTR | 30.0% |
| TGGAAGTGAAAAAAGAAAGA+AGG | + | chr3_1:55128264-55128283 | Msa0363050:three_prime_UTR | 30.0% | |
| CCACAAATGACTAAATGAAA+AGG | - | chr3_1:55128293-55128312 | None:intergenic | 30.0% | |
| ! | CCTTTTCATTTAGTCATTTG+TGG | + | chr3_1:55128290-55128309 | Msa0363050:three_prime_UTR | 30.0% |
| TCAAATAGTTGTGCTGTGTT+TGG | + | chr3_1:55122654-55122673 | Msa0363050:five_prime_UTR | 35.0% | |
| GATCATAAAGAGATAGAGAG+TGG | - | chr3_1:55122894-55122913 | None:intergenic | 35.0% | |
| CTAGTAATGAAGTGAAGTGT+TGG | - | chr3_1:55123219-55123238 | None:intergenic | 35.0% | |
| ATCAATGATGACAATTCAGC+AGG | - | chr3_1:55123412-55123431 | None:intergenic | 35.0% | |
| ! | TTGATGATTAAGGTCCAGTT+TGG | + | chr3_1:55123509-55123528 | Msa0363050:intron | 35.0% |
| ! | GATTTGCTTATAGCCTATGA+TGG | + | chr3_1:55123531-55123550 | Msa0363050:intron | 35.0% |
| ! | CACACAAGTACAAGTTTTCA+AGG | - | chr3_1:55123605-55123624 | None:intergenic | 35.0% |
| AAAACTTGTACTTGTGTGTG+TGG | + | chr3_1:55123607-55123626 | Msa0363050:intron | 35.0% | |
| TGGAGATTAGAGAAGTTAGA+CGG | + | chr3_1:55123627-55123646 | Msa0363050:intron | 35.0% | |
| TAAAGACTTGCGGAAAAAGA+AGG | - | chr3_1:55123749-55123768 | None:intergenic | 35.0% | |
| !! | TAGTGGTATGATTCTAGCTT+GGG | + | chr3_1:55123825-55123844 | Msa0363050:intron | 35.0% |
| ! | TGTTGTTGTTGTTGTGTCTT+TGG | + | chr3_1:55124022-55124041 | Msa0363050:intron | 35.0% |
| GACTCTCAAAGCACAAAATT+TGG | + | chr3_1:55124067-55124086 | Msa0363050:intron | 35.0% | |
| TGAGCTTCCTGAATAATTGT+AGG | + | chr3_1:55124563-55124582 | Msa0363050:intron | 35.0% | |
| GAGCTTCCTGAATAATTGTA+GGG | + | chr3_1:55124564-55124583 | Msa0363050:intron | 35.0% | |
| GGATTTATCCACTATAAGCT+CGG | - | chr3_1:55124609-55124628 | None:intergenic | 35.0% | |
| TATCTGTGTGAAAAGAAGTG+TGG | - | chr3_1:55124658-55124677 | None:intergenic | 35.0% | |
| GCACATCAGTGATAAATAAC+AGG | + | chr3_1:55124930-55124949 | Msa0363050:intron | 35.0% | |
| CATCAGTGATAAATAACAGG+GGG | + | chr3_1:55124933-55124952 | Msa0363050:intron | 35.0% | |
| TAAATAACAGGGGGTAGTAT+TGG | + | chr3_1:55124942-55124961 | Msa0363050:intron | 35.0% | |
| !!! | AGGATTTTAAGGCTGTTCAA+AGG | + | chr3_1:55124967-55124986 | Msa0363050:intron | 35.0% |
| TGTATTCAATAGGAATGTGG+AGG | + | chr3_1:55125051-55125070 | Msa0363050:intron | 35.0% | |
| GTATTCAATAGGAATGTGGA+GGG | + | chr3_1:55125052-55125071 | Msa0363050:intron | 35.0% | |
| ! | TTTTGCAGAGGCAAGTAAAT+GGG | - | chr3_1:55125157-55125176 | None:intergenic | 35.0% |
| ! | ATTTTGCAGAGGCAAGTAAA+TGG | - | chr3_1:55125158-55125177 | None:intergenic | 35.0% |
| ACCTAGTTTCACATTATCAG+TGG | + | chr3_1:55125275-55125294 | Msa0363050:intron | 35.0% | |
| ! | TCCACTGATAATGTGAAACT+AGG | - | chr3_1:55125279-55125298 | None:intergenic | 35.0% |
| AAAGAGAATCAGTCACTTAG+AGG | - | chr3_1:55125447-55125466 | None:intergenic | 35.0% | |
| GAATAAAACTTGCAGAAAGG+AGG | - | chr3_1:55125616-55125635 | None:intergenic | 35.0% | |
| GGAGAAAAAGGAAACACAAA+TGG | - | chr3_1:55125664-55125683 | None:intergenic | 35.0% | |
| CTGTTTCAACTCGTGTATAA+TGG | + | chr3_1:55125753-55125772 | Msa0363050:intron | 35.0% | |
| !! | GAGTCTTGTTCATCATCAAT+TGG | + | chr3_1:55125846-55125865 | Msa0363050:intron | 35.0% |
| TCTAACAGAGTGATAAATGC+AGG | + | chr3_1:55125995-55126014 | Msa0363050:intron | 35.0% | |
| ATGACTAGGCCAGTTAATTT+GGG | - | chr3_1:55126149-55126168 | None:intergenic | 35.0% | |
| AATGACTAGGCCAGTTAATT+TGG | - | chr3_1:55126150-55126169 | None:intergenic | 35.0% | |
| ! | GATTTTTCTTATCTGCCATC+AGG | - | chr3_1:55126556-55126575 | None:intergenic | 35.0% |
| GATAAGAAAAATCCACACGT+TGG | + | chr3_1:55126563-55126582 | Msa0363050:intron | 35.0% | |
| TTAACAATGATACCAACGTG+TGG | - | chr3_1:55126578-55126597 | None:intergenic | 35.0% | |
| TCTGTGCTTTGCAATGTAAA+TGG | + | chr3_1:55126641-55126660 | Msa0363050:CDS | 35.0% | |
| TTATGTGAGTACCTGTTATC+GGG | + | chr3_1:55126794-55126813 | Msa0363050:intron | 35.0% | |
| CTGAAAAAAAAAAAGGCGAG+AGG | - | chr3_1:55127237-55127256 | None:intergenic | 35.0% | |
| ATCATTGAGAATGAGACATG+TGG | - | chr3_1:55127279-55127298 | None:intergenic | 35.0% | |
| !! | AAAGCTTTAGATGTTGCACA+TGG | + | chr3_1:55127430-55127449 | Msa0363050:intron | 35.0% |
| TATTTCTTCCTCAAGATTCG+CGG | + | chr3_1:55128105-55128124 | Msa0363050:CDS | 35.0% | |
| GAGAAAAAGACATGAAGGAA+AGG | - | chr3_1:55128149-55128168 | None:intergenic | 35.0% | |
| CCTAAGAGAAAAAGACATGA+AGG | - | chr3_1:55128154-55128173 | None:intergenic | 35.0% | |
| ! | CCTTCATGTCTTTTTCTCTT+AGG | + | chr3_1:55128151-55128170 | Msa0363050:CDS | 35.0% |
| ! | GTGTTTCTACCCTTCAACAA+TGG | + | chr3_1:55122676-55122695 | Msa0363050:exon | 40.0% |
| CTAGCAATGCCATTGTTGAA+GGG | - | chr3_1:55122688-55122707 | None:intergenic | 40.0% | |
| CTGAATTCACAAGTTGTGGT+AGG | - | chr3_1:55122785-55122804 | None:intergenic | 40.0% | |
| ! | TGTGAATTCAGTTTTCGCGA+CGG | + | chr3_1:55122794-55122813 | Msa0363050:CDS | 40.0% |
| GTTACGAATTGGAGAAGAGA+GGG | - | chr3_1:55122840-55122859 | None:intergenic | 40.0% | |
| AGTTACGAATTGGAGAAGAG+AGG | - | chr3_1:55122841-55122860 | None:intergenic | 40.0% | |
| AAGAAATAAGCGTGACCTGA+TGG | - | chr3_1:55123183-55123202 | None:intergenic | 40.0% | |
| CTATGTCTATGCTTCATAGC+TGG | - | chr3_1:55123256-55123275 | None:intergenic | 40.0% | |
| ! | ACGCCTTAAATCAGAAGTGT+CGG | + | chr3_1:55123372-55123391 | Msa0363050:intron | 40.0% |
| GGCTATAAGCAAATCCAAAC+TGG | - | chr3_1:55123526-55123545 | None:intergenic | 40.0% | |
| GGAGATTAGAGAAGTTAGAC+GGG | + | chr3_1:55123628-55123647 | Msa0363050:intron | 40.0% | |
| ! | CTAGTGGTATGATTCTAGCT+TGG | + | chr3_1:55123824-55123843 | Msa0363050:intron | 40.0% |
| !! | AGTGGTATGATTCTAGCTTG+GGG | + | chr3_1:55123826-55123845 | Msa0363050:intron | 40.0% |
| ! | AAGTCTTATCCCACTAAGTG+GGG | - | chr3_1:55123975-55123994 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+GGG | - | chr3_1:55123976-55123995 | None:intergenic | 40.0% |
| ! | TCAAGTCTTATCCCACTAAG+TGG | - | chr3_1:55123977-55123996 | None:intergenic | 40.0% |
| TTCAGGAAGCTCAAAAACGA+TGG | - | chr3_1:55124556-55124575 | None:intergenic | 40.0% | |
| GACAAGATCAGTGGAGAAAA+AGG | - | chr3_1:55125676-55125695 | None:intergenic | 40.0% | |
| TTCTCAGTGTGAAGAATAGG+AGG | + | chr3_1:55125963-55125982 | Msa0363050:intron | 40.0% | |
| GTGTGAAGAATAGGAGGTAA+TGG | + | chr3_1:55125969-55125988 | Msa0363050:intron | 40.0% | |
| AGCACAAATTCGAGCCAAAA+TGG | - | chr3_1:55126443-55126462 | None:intergenic | 40.0% | |
| CCAGAGAACAGTTGTACTTA+AGG | - | chr3_1:55126616-55126635 | None:intergenic | 40.0% | |
| CCTTAAGTACAACTGTTCTC+TGG | + | chr3_1:55126613-55126632 | Msa0363050:CDS | 40.0% | |
| TACATTGCAAAGCACAGACA+CGG | - | chr3_1:55126639-55126658 | None:intergenic | 40.0% | |
| CCACACTAACTAGTGGAATA+TGG | - | chr3_1:55127084-55127103 | None:intergenic | 40.0% | |
| CCATATTCCACTAGTTAGTG+TGG | + | chr3_1:55127081-55127100 | Msa0363050:intron | 40.0% | |
| GCATATACCACACTAACTAG+TGG | - | chr3_1:55127091-55127110 | None:intergenic | 40.0% | |
| CTTTAGATGTTGCACATGGA+TGG | + | chr3_1:55127434-55127453 | Msa0363050:intron | 40.0% | |
| TGGAATGTACATTGATGCAG+GGG | - | chr3_1:55127614-55127633 | None:intergenic | 40.0% | |
| GTGGAATGTACATTGATGCA+GGG | - | chr3_1:55127615-55127634 | None:intergenic | 40.0% | |
| ACAGAGCTAAAACATCCATC+TGG | + | chr3_1:55127871-55127890 | Msa0363050:CDS | 40.0% | |
| CCATGATTGTACATGTCCAT+GGG | + | chr3_1:55127899-55127918 | Msa0363050:CDS | 40.0% | |
| CCAGTAGATAAGCAGCAAAA+AGG | - | chr3_1:55128068-55128087 | None:intergenic | 40.0% | |
| !! | CCTTTTTGCTGCTTATCTAC+TGG | + | chr3_1:55128065-55128084 | Msa0363050:CDS | 40.0% |
| GAGATTGAGGCTATCTGTGA+CGG | - | chr3_1:55122604-55122623 | None:intergenic | 45.0% | |
| ! | GTTTGAGAAGCGTGAGATTG+AGG | - | chr3_1:55122617-55122636 | None:intergenic | 45.0% |
| GCTAGCAATGCCATTGTTGA+AGG | - | chr3_1:55122689-55122708 | None:intergenic | 45.0% | |
| CCATGAGGGAAGTTACGAAT+TGG | - | chr3_1:55122851-55122870 | None:intergenic | 45.0% | |
| CCAATTCGTAACTTCCCTCA+TGG | + | chr3_1:55122848-55122867 | Msa0363050:CDS | 45.0% | |
| ! | GCACCGACACTTCTGATTTA+AGG | - | chr3_1:55123378-55123397 | None:intergenic | 45.0% |
| !! | ATCAGAAGTGTCGGTGCTAT+AGG | + | chr3_1:55123381-55123400 | Msa0363050:intron | 45.0% |
| !! | TCAGAAGTGTCGGTGCTATA+GGG | + | chr3_1:55123382-55123401 | Msa0363050:intron | 45.0% |
| ATGATGACAATTCAGCAGGC+AGG | - | chr3_1:55123408-55123427 | None:intergenic | 45.0% | |
| GACTTGCGGAAAAAGAAGGA+CGG | - | chr3_1:55123745-55123764 | None:intergenic | 45.0% | |
| TTGTTTGAGCAGCTTTGCGA+TGG | + | chr3_1:55124160-55124179 | Msa0363050:intron | 45.0% | |
| TCAGAGATCCGAGCTTATAG+TGG | + | chr3_1:55124598-55124617 | Msa0363050:intron | 45.0% | |
| ! | AACAGGGGGTAGTATTGGAT+AGG | + | chr3_1:55124947-55124966 | Msa0363050:intron | 45.0% |
| GCACTCGTGTCAAACAACAT+TGG | + | chr3_1:55125102-55125121 | Msa0363050:CDS | 45.0% | |
| CTCGTGTCAAACAACATTGG+AGG | + | chr3_1:55125105-55125124 | Msa0363050:CDS | 45.0% | |
| !! | TGGGAGAAAACAGAAGTGTC+AGG | - | chr3_1:55125138-55125157 | None:intergenic | 45.0% |
| ! | CGCTAGACACAATTTTGCAG+AGG | - | chr3_1:55125169-55125188 | None:intergenic | 45.0% |
| TGCTTTAGTGTCTGTGTCCT+TGG | + | chr3_1:55125305-55125324 | Msa0363050:intron | 45.0% | |
| TATCATGTGTGCTCAGCCAT+AGG | + | chr3_1:55126019-55126038 | Msa0363050:CDS | 45.0% | |
| !! | AATTTTTGGGCCACGTCCTA+TGG | - | chr3_1:55126038-55126057 | None:intergenic | 45.0% |
| TCCCTCCATCCCAAATTAAC+TGG | + | chr3_1:55126137-55126156 | Msa0363050:intron | 45.0% | |
| ! | GCCAGTTAATTTGGGATGGA+GGG | - | chr3_1:55126141-55126160 | None:intergenic | 45.0% |
| ! | CTAGGCCAGTTAATTTGGGA+TGG | - | chr3_1:55126145-55126164 | None:intergenic | 45.0% |
| TGTGGTATATGCGCTTGTCT+TGG | + | chr3_1:55127099-55127118 | Msa0363050:intron | 45.0% | |
| AGAATGAGACATGTGGTAGC+TGG | - | chr3_1:55127272-55127291 | None:intergenic | 45.0% | |
| CGTGGAATGTACATTGATGC+AGG | - | chr3_1:55127616-55127635 | None:intergenic | 45.0% | |
| TGTATGCTTTAGCCCGTGTT+TGG | - | chr3_1:55127784-55127803 | None:intergenic | 45.0% | |
| ! | TGTAACCCTGTTTCTTGAGC+AGG | + | chr3_1:55127846-55127865 | Msa0363050:intron | 45.0% |
| TGTAGCCTGCTCAAGAAACA+GGG | - | chr3_1:55127854-55127873 | None:intergenic | 45.0% | |
| ACAATCATGGCACAACCAGA+TGG | - | chr3_1:55127889-55127908 | None:intergenic | 45.0% | |
| GCCATGATTGTACATGTCCA+TGG | + | chr3_1:55127898-55127917 | Msa0363050:CDS | 45.0% | |
| CCCATGGACATGTACAATCA+TGG | - | chr3_1:55127902-55127921 | None:intergenic | 45.0% | |
| ATTGTACATGTCCATGGGAG+TGG | + | chr3_1:55127904-55127923 | Msa0363050:CDS | 45.0% | |
| ! | ATTCAAAGTGCCAGGCAAGA+CGG | - | chr3_1:55127974-55127993 | None:intergenic | 45.0% |
| ! | AGCAAAAAGGCACAGAACAC+TGG | - | chr3_1:55128055-55128074 | None:intergenic | 45.0% |
| ! | TTTGCTGCTTATCTACTGGC+TGG | + | chr3_1:55128069-55128088 | Msa0363050:CDS | 45.0% |
| !!! | TGATATATATATATTTTTTT+TGG | + | chr3_1:55124338-55124357 | Msa0363050:intron | 5.0% |
| !!! | GATATATATATATTTTTTTT+GGG | + | chr3_1:55124339-55124358 | Msa0363050:intron | 5.0% |
| !!! | AAATTTTAACATATTATATA+TGG | + | chr3_1:55124719-55124738 | Msa0363050:intron | 5.0% |
| !! | TATTTATTAGAAAATTAAAA+TGG | - | chr3_1:55125910-55125929 | None:intergenic | 5.0% |
| ! | AGGCTATCTGTGACGGAAGA+AGG | - | chr3_1:55122597-55122616 | None:intergenic | 50.0% |
| CGGTGAAGAGAGTGAAGATG+AGG | - | chr3_1:55122727-55122746 | None:intergenic | 50.0% | |
| ! | ACCACCCTTTGGTTTCAGGT+TGG | + | chr3_1:55123155-55123174 | Msa0363050:intron | 50.0% |
| GGAGCCAACCTGAAACCAAA+GGG | - | chr3_1:55123162-55123181 | None:intergenic | 50.0% | |
| TGGAGCCAACCTGAAACCAA+AGG | - | chr3_1:55123163-55123182 | None:intergenic | 50.0% | |
| CGACGTGTCTATGTCGAGTT+CGG | - | chr3_1:55123282-55123301 | None:intergenic | 50.0% | |
| !! | ACTAAGTGGGGTTGGCTACA+TGG | - | chr3_1:55123963-55123982 | None:intergenic | 50.0% |
| ATGTAGCCAACCCCACTTAG+TGG | + | chr3_1:55123962-55123981 | Msa0363050:intron | 50.0% | |
| TGTAGCCAACCCCACTTAGT+GGG | + | chr3_1:55123963-55123982 | Msa0363050:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+TGG | - | chr3_1:55123971-55123990 | None:intergenic | 50.0% | |
| AGCAGTCAGCACATGTTGGA+GGG | - | chr3_1:55124204-55124223 | None:intergenic | 50.0% | |
| !! | TCCAACATGTGCTGACTGCT+GGG | + | chr3_1:55124204-55124223 | Msa0363050:CDS | 50.0% |
| GCGAACAGTTCTTCTCTGCT+TGG | + | chr3_1:55125224-55125243 | Msa0363050:intron | 50.0% | |
| CATCATCAATTGGGCAGAGC+TGG | + | chr3_1:55125856-55125875 | Msa0363050:intron | 50.0% | |
| ! | GGCCAGTTAATTTGGGATGG+AGG | - | chr3_1:55126142-55126161 | None:intergenic | 50.0% |
| ACCACAAACCCTGGAGAGAT+CGG | + | chr3_1:55126761-55126780 | Msa0363050:CDS | 50.0% | |
| CTGTAGCCTGCTCAAGAAAC+AGG | - | chr3_1:55127855-55127874 | None:intergenic | 50.0% | |
| TACATGTCCATGGGAGTGGA+TGG | + | chr3_1:55127908-55127927 | Msa0363050:CDS | 50.0% | |
| ACATGTCCATGGGAGTGGAT+GGG | + | chr3_1:55127909-55127928 | Msa0363050:CDS | 50.0% | |
| ! | GCATTTTTCACCGTCTTGCC+TGG | + | chr3_1:55127961-55127980 | Msa0363050:intron | 50.0% |
| CTTCTGTACCGCGAATCTTG+AGG | - | chr3_1:55128116-55128135 | None:intergenic | 50.0% | |
| TCTGTGTGTGCGCGTTCAGA+AGG | - | chr3_1:55122554-55122573 | None:intergenic | 55.0% | |
| AAGATGAGGCACGTGCGTTC+TGG | - | chr3_1:55122713-55122732 | None:intergenic | 55.0% | |
| CTTCGCTGAGGATGCCATGA+GGG | - | chr3_1:55122865-55122884 | None:intergenic | 55.0% | |
| TCTTCGCTGAGGATGCCATG+AGG | - | chr3_1:55122866-55122885 | None:intergenic | 55.0% | |
| CATGGCATCCTCAGCGAAGA+CGG | + | chr3_1:55122866-55122885 | Msa0363050:CDS | 55.0% | |
| ATGGCATCCTCAGCGAAGAC+GGG | + | chr3_1:55122867-55122886 | Msa0363050:CDS | 55.0% | |
| CAGTGAACCAGACCACCCTT+TGG | + | chr3_1:55123144-55123163 | Msa0363050:CDS | 55.0% | |
| CCTGAAACCAAAGGGTGGTC+TGG | - | chr3_1:55123154-55123173 | None:intergenic | 55.0% | |
| ! | CCAGACCACCCTTTGGTTTC+AGG | + | chr3_1:55123151-55123170 | Msa0363050:CDS | 55.0% |
| GCCAACCTGAAACCAAAGGG+TGG | - | chr3_1:55123159-55123178 | None:intergenic | 55.0% | |
| !! | GGTTTCAGGTTGGCTCCATC+AGG | + | chr3_1:55123165-55123184 | Msa0363050:intron | 55.0% |
| !! | ATTCTAGCTTGGGGTGCGAG+AGG | + | chr3_1:55123835-55123854 | Msa0363050:intron | 55.0% |
| CAGCAGTCAGCACATGTTGG+AGG | - | chr3_1:55124205-55124224 | None:intergenic | 55.0% | |
| !! | CTCCAACATGTGCTGACTGC+TGG | + | chr3_1:55124203-55124222 | Msa0363050:CDS | 55.0% |
| ACCCAGCAGTCAGCACATGT+TGG | - | chr3_1:55124208-55124227 | None:intergenic | 55.0% | |
| CACTCCATCCCACAACGTGT+TGG | - | chr3_1:55125078-55125097 | None:intergenic | 55.0% | |
| ACACGTTGTGGGATGGAGTG+CGG | + | chr3_1:55125078-55125097 | Msa0363050:CDS | 55.0% | |
| CTTACAGGGACCACAAACCC+TGG | + | chr3_1:55126752-55126771 | Msa0363050:intron | 55.0% | |
| CCACAAACCCTGGAGAGATC+GGG | + | chr3_1:55126762-55126781 | Msa0363050:CDS | 55.0% | |
| CACAAACCCTGGAGAGATCG+GGG | + | chr3_1:55126763-55126782 | Msa0363050:CDS | 55.0% | |
| ACAAACCCTGGAGAGATCGG+GGG | + | chr3_1:55126764-55126783 | Msa0363050:CDS | 55.0% | |
| ACAATCCCCCGATCTCTCCA+GGG | - | chr3_1:55126772-55126791 | None:intergenic | 55.0% | |
| TACAATCCCCCGATCTCTCC+AGG | - | chr3_1:55126773-55126792 | None:intergenic | 55.0% | |
| CATGTCCATGGGAGTGGATG+GGG | + | chr3_1:55127910-55127929 | Msa0363050:CDS | 55.0% | |
| ATGTCCATGGGAGTGGATGG+GGG | + | chr3_1:55127911-55127930 | Msa0363050:CDS | 55.0% | |
| TGTGGAGGGCCAACACGTTG+TGG | + | chr3_1:55125066-55125085 | Msa0363050:CDS | 60.0% | |
| GTGGAGGGCCAACACGTTGT+GGG | + | chr3_1:55125067-55125086 | Msa0363050:CDS | 60.0% | |
| AGGGCCAACACGTTGTGGGA+TGG | + | chr3_1:55125071-55125090 | Msa0363050:CDS | 60.0% | |
| GTGTGCTCAGCCATAGGACG+TGG | + | chr3_1:55126025-55126044 | Msa0363050:CDS | 60.0% | |
| CCCGATCTCTCCAGGGTTTG+TGG | - | chr3_1:55126765-55126784 | None:intergenic | 60.0% | |
| GAGTGGACCCGTCTTCGCTG+AGG | - | chr3_1:55122877-55122896 | None:intergenic | 65.0% | |
| TCCATGGGAGTGGATGGGGG+TGG | + | chr3_1:55127914-55127933 | Msa0363050:CDS | 65.0% | |
| ACCACCCCCATCCACTCCCA+TGG | - | chr3_1:55127918-55127937 | None:intergenic | 65.0% | |
| GGGAGTGGATGGGGGTGGTT+TGG | + | chr3_1:55127919-55127938 | Msa0363050:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 55122512 | 55128327 | 55122512 | ID=Msa0363050;Name=Msa0363050 |
| chr3_1 | mRNA | 55122512 | 55128327 | 55122512 | ID=Msa0363050-mRNA-1;Parent=Msa0363050;Name=Msa0363050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=183|1|1|1|0.87|0.88|9|118|266 |
| chr3_1 | exon | 55122512 | 55122888 | 55122512 | ID=Msa0363050-mRNA-1:exon:9975;Parent=Msa0363050-mRNA-1 |
| chr3_1 | exon | 55123130 | 55123172 | 55123130 | ID=Msa0363050-mRNA-1:exon:9976;Parent=Msa0363050-mRNA-1 |
| chr3_1 | exon | 55124172 | 55124225 | 55124172 | ID=Msa0363050-mRNA-1:exon:9977;Parent=Msa0363050-mRNA-1 |
| chr3_1 | exon | 55125063 | 55125126 | 55125063 | ID=Msa0363050-mRNA-1:exon:9978;Parent=Msa0363050-mRNA-1 |
| chr3_1 | exon | 55126017 | 55126073 | 55126017 | ID=Msa0363050-mRNA-1:exon:9979;Parent=Msa0363050-mRNA-1 |
| chr3_1 | exon | 55126564 | 55126670 | 55126564 | ID=Msa0363050-mRNA-1:exon:9980;Parent=Msa0363050-mRNA-1 |
| chr3_1 | exon | 55126759 | 55126797 | 55126759 | ID=Msa0363050-mRNA-1:exon:9981;Parent=Msa0363050-mRNA-1 |
| chr3_1 | exon | 55127868 | 55127956 | 55127868 | ID=Msa0363050-mRNA-1:exon:9982;Parent=Msa0363050-mRNA-1 |
| chr3_1 | exon | 55128056 | 55128327 | 55128056 | ID=Msa0363050-mRNA-1:exon:9983;Parent=Msa0363050-mRNA-1 |
| chr3_1 | five_prime_UTR | 55122512 | 55122694 | 55122512 | ID=Msa0363050-mRNA-1:five_prime_utr;Parent=Msa0363050-mRNA-1 |
| chr3_1 | CDS | 55122695 | 55122888 | 55122695 | ID=Msa0363050-mRNA-1:cds;Parent=Msa0363050-mRNA-1 |
| chr3_1 | CDS | 55123130 | 55123172 | 55123130 | ID=Msa0363050-mRNA-1:cds;Parent=Msa0363050-mRNA-1 |
| chr3_1 | CDS | 55124172 | 55124225 | 55124172 | ID=Msa0363050-mRNA-1:cds;Parent=Msa0363050-mRNA-1 |
| chr3_1 | CDS | 55125063 | 55125126 | 55125063 | ID=Msa0363050-mRNA-1:cds;Parent=Msa0363050-mRNA-1 |
| chr3_1 | CDS | 55126017 | 55126073 | 55126017 | ID=Msa0363050-mRNA-1:cds;Parent=Msa0363050-mRNA-1 |
| chr3_1 | CDS | 55126564 | 55126670 | 55126564 | ID=Msa0363050-mRNA-1:cds;Parent=Msa0363050-mRNA-1 |
| chr3_1 | CDS | 55126759 | 55126797 | 55126759 | ID=Msa0363050-mRNA-1:cds;Parent=Msa0363050-mRNA-1 |
| chr3_1 | CDS | 55127868 | 55127956 | 55127868 | ID=Msa0363050-mRNA-1:cds;Parent=Msa0363050-mRNA-1 |
| chr3_1 | CDS | 55128056 | 55128209 | 55128056 | ID=Msa0363050-mRNA-1:cds;Parent=Msa0363050-mRNA-1 |
| chr3_1 | three_prime_UTR | 55128210 | 55128327 | 55128210 | ID=Msa0363050-mRNA-1:three_prime_utr;Parent=Msa0363050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
