AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0214540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0214540 MtrunA17_Chr2g0315531 96.610 472 16 0 4 475 1 472 0.0 946
Msa0214540 MtrunA17_Chr8g0359791 67.179 390 113 7 70 455 32 410 1.73e-177 504
Msa0214540 MtrunA17_Chr8g0379551 45.572 463 237 7 1 453 14 471 7.36e-126 374
Msa0214540 MtrunA17_Chr4g0011611 41.538 390 210 5 71 453 34 412 1.15e-98 303
Msa0214540 MtrunA17_Chr7g0230481 31.990 397 245 5 69 453 139 522 7.85e-58 199
Msa0214540 MtrunA17_Chr3g0103691 30.941 404 246 10 73 457 92 481 1.49e-50 179
Msa0214540 MtrunA17_Chr5g0432511 32.447 376 214 9 86 455 33 374 6.72e-49 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0214540 AT1G53380.2 52.505 459 203 7 1 453 1 450 1.83e-167 480
Msa0214540 AT1G53380.4 52.505 459 203 7 1 453 1 450 1.83e-167 480
Msa0214540 AT1G53380.1 52.505 459 203 7 1 453 1 450 1.83e-167 480
Msa0214540 AT1G53380.3 52.505 459 203 7 1 453 1 450 1.83e-167 480
Msa0214540 AT1G53380.5 52.505 459 203 7 1 453 1 450 1.83e-167 480
Msa0214540 AT3G14870.4 50.318 471 216 5 1 458 1 466 1.86e-164 473
Msa0214540 AT3G14870.5 50.318 471 216 5 1 458 1 466 1.86e-164 473
Msa0214540 AT3G14870.2 50.318 471 216 5 1 458 1 466 1.86e-164 473
Msa0214540 AT3G14870.3 50.318 471 216 5 1 458 2 467 1.90e-164 473
Msa0214540 AT3G14870.1 50.318 471 216 5 1 458 5 470 2.96e-164 473
Msa0214540 AT1G29300.1 42.678 478 230 9 1 457 1 455 2.30e-112 340
Msa0214540 AT2G45260.1 40.657 396 222 3 65 453 29 418 4.79e-100 306
Msa0214540 AT3G60680.1 32.987 385 242 4 74 453 120 493 3.64e-60 205
Msa0214540 AT2G30380.1 32.311 424 223 7 30 453 51 410 4.14e-56 192
Msa0214540 AT4G34080.1 36.823 277 168 2 65 334 5 281 2.93e-54 183
Msa0214540 AT4G33320.1 34.982 283 176 3 65 339 5 287 4.16e-48 167
Msa0214540 AT5G58960.2 29.756 410 250 10 73 456 86 483 1.37e-47 171
Msa0214540 AT5G58960.3 29.756 410 250 10 73 456 86 483 1.37e-47 171
Msa0214540 AT5G58960.1 29.756 410 250 10 73 456 161 558 2.71e-47 172
Msa0214540 AT2G32130.1 44.355 124 69 0 73 196 34 157 3.39e-26 104
Msa0214540 AT4G36100.1 47.312 93 46 1 71 160 11 103 7.85e-20 89.0

Find 108 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTAATATCAATACAATTT+TGG 0.077216 2_1:-59031505 None:intergenic
GCTAGCATTTCAACCGTTAA+AGG 0.254354 2_1:+59029927 Msa0214540:CDS
TCCATGTTTGTTTCATCCTT+TGG 0.256313 2_1:-59029801 None:intergenic
CCCAAAATTGTATTGATATT+AGG 0.269358 2_1:+59031504 Msa0214540:three_prime_UTR
TCATTTGGAAGATTGAAATT+AGG 0.272865 2_1:-59030533 None:intergenic
GATAATGTTGTTCACATATC+AGG 0.291769 2_1:+59030293 Msa0214540:CDS
ATGTCCTTCCCTTGTGTTGT+AGG 0.319600 2_1:-59031302 None:intergenic
CATGGCATGGACTGAACTTT+TGG 0.327379 2_1:+59031322 Msa0214540:three_prime_UTR
AGCTGAATCGAAGGAGATAA+AGG 0.344297 2_1:+59030109 Msa0214540:CDS
ATGAAATGAGATCTGCAAAA+TGG 0.347278 2_1:+59030393 Msa0214540:CDS
TTCAGCATATGCACCTTTAA+CGG 0.355170 2_1:-59029940 None:intergenic
TTCCTAGCTAATTTCTTGCT+TGG 0.381111 2_1:-59029717 None:intergenic
GAGAAAGAGAGAATAAAAGC+AGG 0.390355 2_1:-59025534 None:intergenic
AATTGCGCAAACGACGATCT+TGG 0.395372 2_1:-59030653 None:intergenic
TCATCAGGAAGTGCCTCATT+TGG 0.398030 2_1:-59030548 None:intergenic
GACGAAGAACAGTAGCAAAA+TGG 0.401046 2_1:-59030328 None:intergenic
CACATCACGCGGTTACAATC+TGG 0.403958 2_1:+59031210 Msa0214540:three_prime_UTR
GAAATCTTTCAAGTGGGAAA+AGG 0.412349 2_1:+59030863 Msa0214540:CDS
AATTGTTGCAGGACCGCGTT+TGG 0.416860 2_1:+59026280 Msa0214540:intron
GATTAACTCCTGTGTGAAAT+CGG 0.417828 2_1:-59031094 None:intergenic
TCAGAAGCTTCAATTCCATC+AGG 0.419938 2_1:-59029990 None:intergenic
GAATGATATATAATATAGTT+AGG 0.423631 2_1:+59031596 Msa0214540:three_prime_UTR
CGTCGTTTGCGCAATTCTGC+AGG 0.425402 2_1:+59030660 Msa0214540:CDS
TTCAAATTTCTATAAGCAAA+AGG 0.426187 2_1:+59031256 Msa0214540:three_prime_UTR
TTGCTTGGTGTCACTGCTGA+AGG 0.427239 2_1:-59029702 None:intergenic
GTTTCTTAAAGAGAAATTAG+TGG 0.430754 2_1:+59030205 Msa0214540:CDS
TCAGAAGAAGAACCAGTTGT+TGG 0.431414 2_1:+59030962 Msa0214540:CDS
GAAACTCTCCACCACTCAAA+AGG 0.438973 2_1:-59030751 None:intergenic
CGCGAAGAAGTTGGAATCAC+AGG 0.450315 2_1:+59030157 Msa0214540:CDS
TGTCCTTCCCTTGTGTTGTA+GGG 0.453529 2_1:-59031301 None:intergenic
ATAACAAGTTGATTGAGAAT+AGG 0.454361 2_1:+59030240 Msa0214540:CDS
CGAGATTACCGCGAAGAAGT+TGG 0.455237 2_1:+59030148 Msa0214540:CDS
GCAAAAGGAGATTTGTGGTC+AGG 0.460249 2_1:+59031271 Msa0214540:three_prime_UTR
ATATTATATCATGCAATGTC+TGG 0.464188 2_1:-59031564 None:intergenic
TAATTTCAATCTTCCAAATG+AGG 0.473527 2_1:+59030535 Msa0214540:CDS
TGCTCTAAGATGAAGAACTT+TGG 0.476082 2_1:-59029745 None:intergenic
CTAAGCAAACACGAGTAGTT+CGG 0.476855 2_1:+59025451 None:intergenic
TATAAGCAAAAGGAGATTTG+TGG 0.477662 2_1:+59031266 Msa0214540:three_prime_UTR
AGCTTGAACCTCAAAAGAAA+AGG 0.479323 2_1:-59030840 None:intergenic
GAAGAGTAACATAGAGAAGT+GGG 0.485986 2_1:-59025662 None:intergenic
AGCTAGTGGGACCATAGCAT+TGG 0.490242 2_1:+59031405 Msa0214540:three_prime_UTR
GAGAGAGATTTGAGAGCTCA+AGG 0.492775 2_1:-59025564 None:intergenic
TGTTCTGAGGTTTAGAAAAG+TGG 0.494945 2_1:-59025709 None:intergenic
AAATCTTTCAAGTGGGAAAA+GGG 0.495316 2_1:+59030864 Msa0214540:CDS
TCAATGTTTGCTCTGTTCTG+AGG 0.496959 2_1:-59025722 None:intergenic
TCAATTCCATCAGGGTCAAA+AGG 0.497708 2_1:-59029981 None:intergenic
TAAAATAGCCAAAACACAAA+AGG 0.498057 2_1:-59031368 None:intergenic
GCTGCGAGTATCGCTTTCTC+TGG 0.498611 2_1:-59030089 None:intergenic
CTGTGATTCCAACTTCTTCG+CGG 0.499296 2_1:-59030156 None:intergenic
GACACAGCTGGAAGAGAGAA+AGG 0.502293 2_1:-59025604 None:intergenic
AGAAAGAGAGAATAAAAGCA+GGG 0.503857 2_1:-59025533 None:intergenic
ATTGATATTAGGCCGGTGAC+AGG 0.504472 2_1:+59031515 Msa0214540:three_prime_UTR
TGAAGAGTAACATAGAGAAG+TGG 0.505718 2_1:-59025663 None:intergenic
ACAACAGTAAAACCAACAAC+TGG 0.508318 2_1:-59030974 None:intergenic
TGAAATGAGATCTGCAAAAT+GGG 0.517744 2_1:+59030394 Msa0214540:CDS
AGAAGTTGGAATCACAGGTT+AGG 0.521372 2_1:+59030162 Msa0214540:CDS
ACAATCTGGAAATCATTTCA+AGG 0.522677 2_1:+59031224 Msa0214540:three_prime_UTR
TGAGTAGAAGTGTGTGATGA+AGG 0.523455 2_1:-59025752 None:intergenic
TTGATATTAGGCCGGTGACA+GGG 0.531815 2_1:+59031516 Msa0214540:three_prime_UTR
GTCATTTGTGTATCCACCAT+AGG 0.533862 2_1:+59025624 Msa0214540:five_prime_UTR
GCTGAATCGAAGGAGATAAA+GGG 0.535338 2_1:+59030110 Msa0214540:CDS
AAACACGAGTAGTTCGGATT+CGG 0.539101 2_1:+59025457 None:intergenic
AAAGGATCACGATCGCGTGC+TGG 0.540329 2_1:+59031070 Msa0214540:CDS
GCTAGTGGGACCATAGCATT+GGG 0.540918 2_1:+59031406 Msa0214540:three_prime_UTR
CTTCTTCGCGGTAATCTCGT+AGG 0.542317 2_1:-59030144 None:intergenic
AAATGATGAGGAGAAATTGA+AGG 0.550074 2_1:-59026396 None:intergenic
AGCTAGACCACCCCTGTCAC+CGG 0.551001 2_1:-59031527 None:intergenic
AGAGTAACATAGAGAAGTGG+GGG 0.552404 2_1:-59025660 None:intergenic
TGGAAAAGACTACAATAACT+TGG 0.552801 2_1:+59029820 Msa0214540:CDS
GGATACACAAATGACACAGC+TGG 0.559609 2_1:-59025616 None:intergenic
TGAGTTGATTCTTCTGCATG+AGG 0.560321 2_1:-59031042 None:intergenic
AAATTGTATTGATATTAGGC+CGG 0.563272 2_1:+59031508 Msa0214540:three_prime_UTR
TCATTTGTGTATCCACCATA+GGG 0.566136 2_1:+59025625 Msa0214540:five_prime_UTR
AAAGGTTGTTCCCAATGCTA+TGG 0.567458 2_1:-59031416 None:intergenic
AAGAATCAACTCAAGGTGAA+AGG 0.569431 2_1:+59031052 Msa0214540:CDS
TCAAGCTGAAATCTTTCAAG+TGG 0.572316 2_1:+59030856 Msa0214540:CDS
CACAAGGGAAGGACATGGCA+TGG 0.575022 2_1:+59031309 Msa0214540:three_prime_UTR
CAGATTGTAACCGCGTGATG+TGG 0.577454 2_1:-59031209 None:intergenic
TGATATTAGGCCGGTGACAG+GGG 0.580443 2_1:+59031517 Msa0214540:three_prime_UTR
GAGAATAGGTTGAATCAAAG+TGG 0.587193 2_1:+59030254 Msa0214540:CDS
GAAAGAGAGAATAAAAGCAG+GGG 0.596993 2_1:-59025532 None:intergenic
AAGAGTAACATAGAGAAGTG+GGG 0.597005 2_1:-59025661 None:intergenic
CAAGCTGAAATCTTTCAAGT+GGG 0.598623 2_1:+59030857 Msa0214540:CDS
TCCAAAGGATGAAACAAACA+TGG 0.604906 2_1:+59029800 Msa0214540:CDS
AGAGAGATTTGAGAGCTCAA+GGG 0.607103 2_1:-59025563 None:intergenic
ACTTCTACTCATAATCATTG+AGG 0.608505 2_1:+59025764 Msa0214540:five_prime_UTR
GATACTCGCAGCTGAATCGA+AGG 0.611880 2_1:+59030100 Msa0214540:CDS
CGATGCTATTGAACATAATG+TGG 0.612500 2_1:+59030433 Msa0214540:CDS
CAGAAGCTTCAATTCCATCA+GGG 0.612641 2_1:-59029989 None:intergenic
AGTATCGCTTTCTCTGGTGA+AGG 0.613880 2_1:-59030083 None:intergenic
TGCTACTGTTCTTCGTCACG+CGG 0.615594 2_1:+59030334 Msa0214540:CDS
TATATCTGATACAAATCCAA+AGG 0.615715 2_1:+59029785 Msa0214540:CDS
TATTAGGCCGGTGACAGGGG+TGG 0.625854 2_1:+59031520 Msa0214540:three_prime_UTR
ATCATCGATTCGAGATCAGA+CGG 0.630726 2_1:+59031120 Msa0214540:three_prime_UTR
TACAATCTGACTTAGATCAA+CGG 0.632434 2_1:-59031185 None:intergenic
CACCAAGCAAGAAATTAGCT+AGG 0.637970 2_1:+59029715 Msa0214540:CDS
AGAACAGTAGCAAAATGGCT+AGG 0.639681 2_1:-59030323 None:intergenic
GTGCCCTACAACACAAGGGA+AGG 0.641725 2_1:+59031298 Msa0214540:three_prime_UTR
GCATGAGGTAAACTTGACAC+TGG 0.642471 2_1:-59031027 None:intergenic
GTAATGTGCCCTACAACACA+AGG 0.646598 2_1:+59031293 Msa0214540:three_prime_UTR
GAGTAGAAGTGTGTGATGAA+GGG 0.646730 2_1:-59025751 None:intergenic
ATTGAAGGTGAAGTTGAATG+TGG 0.648761 2_1:-59026381 None:intergenic
CATGCAGAAGAATCAACTCA+AGG 0.660821 2_1:+59031045 Msa0214540:CDS
CAGATTGTAACCACATCACG+CGG 0.688641 2_1:+59031199 Msa0214540:three_prime_UTR
GTGCTGGTCCGATTTCACAC+AGG 0.697518 2_1:+59031086 Msa0214540:CDS
TACAACACAAGGGAAGGACA+TGG 0.699467 2_1:+59031304 Msa0214540:three_prime_UTR
TGTTGTTCTAACACCAAACG+CGG 0.717628 2_1:-59026293 None:intergenic
TAATGTGCCCTACAACACAA+GGG 0.747709 2_1:+59031294 Msa0214540:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTATAAAAAGATAA+AGG - chr2_1:59025828-59025847 None:intergenic 10.0%
!! TAAAAAAAACAAAAAATGAA+AGG - chr2_1:59026172-59026191 None:intergenic 10.0%
!! TAATAAAATAAAATGATAGT+AGG - chr2_1:59026999-59027018 None:intergenic 10.0%
!!! GTATATATCATTTTTATAAA+AGG + chr2_1:59027039-59027058 Msa0214540:intron 10.0%
!!! TTTTGTATAATAAAAAATGT+GGG - chr2_1:59027351-59027370 None:intergenic 10.0%
!!! ATTTTGTATAATAAAAAATG+TGG - chr2_1:59027352-59027371 None:intergenic 10.0%
!!! TTTTATCATAAATCATATTT+CGG + chr2_1:59027941-59027960 Msa0214540:intron 10.0%
!! AATTTAACAAAAATAATACT+TGG - chr2_1:59029094-59029113 None:intergenic 10.0%
!! AAAAGATAAAGGAAAAAATT+GGG - chr2_1:59025817-59025836 None:intergenic 15.0%
!! AAAAAGATAAAGGAAAAAAT+TGG - chr2_1:59025818-59025837 None:intergenic 15.0%
!! ATATAAATATTTAGTGATGA+TGG + chr2_1:59026230-59026249 Msa0214540:intron 15.0%
!!! AACTATTATTACTACATTTT+AGG + chr2_1:59026568-59026587 Msa0214540:intron 15.0%
!!! AAATTTGCAATGTTTATTTT+AGG + chr2_1:59026620-59026639 Msa0214540:intron 15.0%
!!! TGACTTTTTTATAGAAAATA+AGG + chr2_1:59026768-59026787 Msa0214540:intron 15.0%
!! ATATATTTATCACAAATACA+AGG - chr2_1:59028059-59028078 None:intergenic 15.0%
!!! GTTTTTTTTTTTTTTTAGTC+AGG + chr2_1:59028348-59028367 Msa0214540:intron 15.0%
!! TAGACATTATTGTAAATTTA+TGG - chr2_1:59028575-59028594 None:intergenic 15.0%
!! ATAAATTTACAATAATGTCT+AGG + chr2_1:59028574-59028593 Msa0214540:intron 15.0%
!! TATATAATTACTTGATTGAT+GGG + chr2_1:59028764-59028783 Msa0214540:intron 15.0%
!!! TTTTATTCTGGTATAAAATA+AGG + chr2_1:59028933-59028952 Msa0214540:intron 15.0%
!! ATAGAAAAAATCAACAAAAT+TGG + chr2_1:59030570-59030589 Msa0214540:CDS 15.0%
!!! AAAAAGATTCTAAAAGAAAA+AGG - chr2_1:59031437-59031456 None:intergenic 15.0%
!! GAATGATATATAATATAGTT+AGG + chr2_1:59031596-59031615 Msa0214540:three_prime_UTR 15.0%
!! AATACTAAAAAAAGAAAAAG+AGG - chr2_1:59031633-59031652 None:intergenic 15.0%
!!! GTTTTTTTATTATCTTCTGT+AGG + chr2_1:59025943-59025962 Msa0214540:intron 20.0%
!!! AGGTATGTTTAATTTCTTTT+TGG + chr2_1:59026425-59026444 Msa0214540:intron 20.0%
!!! GGACATTTTTGTAATTTTAA+AGG + chr2_1:59026719-59026738 Msa0214540:intron 20.0%
!!! AAAGAAATTATCTTTTTGGT+GGG + chr2_1:59026892-59026911 Msa0214540:intron 20.0%
!! TAAAATGATAGTAGGTATTA+TGG - chr2_1:59026991-59027010 None:intergenic 20.0%
!!! AGTATAAAAAAGCACTAAAA+AGG - chr2_1:59027421-59027440 None:intergenic 20.0%
!! TTAATGCATATTAGTTGTAA+CGG - chr2_1:59027460-59027479 None:intergenic 20.0%
!! ACAACTAATATGCATTAATA+TGG + chr2_1:59027462-59027481 Msa0214540:intron 20.0%
!! CAAACAATATATGTAAAGTA+TGG - chr2_1:59027501-59027520 None:intergenic 20.0%
!! AAATAATGACAACAATAGTT+AGG - chr2_1:59027734-59027753 None:intergenic 20.0%
!! TAAATGCTAAATAAGATGTT+TGG + chr2_1:59027836-59027855 Msa0214540:intron 20.0%
!!! TATCTTTTGTCATGATTATA+AGG + chr2_1:59028142-59028161 Msa0214540:intron 20.0%
!! GGATTTAAAAACTAATTAGT+AGG - chr2_1:59028554-59028573 None:intergenic 20.0%
!!! AATAGTTTTTTACAAAGGAA+TGG - chr2_1:59028719-59028738 None:intergenic 20.0%
!! GTATATAATTACTTGATTGA+TGG + chr2_1:59028763-59028782 Msa0214540:intron 20.0%
!!! CATAATGAAAGTATATAGAA+TGG + chr2_1:59028851-59028870 Msa0214540:intron 20.0%
!!! TTGTGCATTATTTTTTATTC+TGG + chr2_1:59028921-59028940 Msa0214540:intron 20.0%
!!! TTCTTTAAAATGATAACCAA+AGG - chr2_1:59029039-59029058 None:intergenic 20.0%
!!! TAATGACAATATCTTTTACT+AGG - chr2_1:59029592-59029611 None:intergenic 20.0%
!! TTCAAATTTCTATAAGCAAA+AGG + chr2_1:59031256-59031275 Msa0214540:three_prime_UTR 20.0%
!!! TAATATCAATACAATTTTGG+GGG - chr2_1:59031505-59031524 None:intergenic 20.0%
!!! CTAATATCAATACAATTTTG+GGG - chr2_1:59031506-59031525 None:intergenic 20.0%
!!! CCTAATATCAATACAATTTT+GGG - chr2_1:59031507-59031526 None:intergenic 20.0%
!!! TTAACGTTGTTGTTGTTTTT+TGG + chr2_1:59026072-59026091 Msa0214540:intron 25.0%
!!! TCATTGTTTTTTTCCTCTTT+CGG + chr2_1:59026104-59026123 Msa0214540:intron 25.0%
!!! GTTTTTTTCTTGGTTCATTT+TGG + chr2_1:59026252-59026271 Msa0214540:intron 25.0%
! GTAAAAATGCAAAAACCAAA+CGG - chr2_1:59026458-59026477 None:intergenic 25.0%
!! GTGGAAAGAAATTATCTTTT+TGG + chr2_1:59026888-59026907 Msa0214540:intron 25.0%
!! GAAAGAAATTATCTTTTTGG+TGG + chr2_1:59026891-59026910 Msa0214540:intron 25.0%
! TGTTGAAATGACATAAACAT+TGG + chr2_1:59027282-59027301 Msa0214540:intron 25.0%
! GTTGAAATGACATAAACATT+GGG + chr2_1:59027283-59027302 Msa0214540:intron 25.0%
! TATATGTAAAGTATGGCTAT+TGG - chr2_1:59027494-59027513 None:intergenic 25.0%
!! TTATGCTATGGCTATATTTT+TGG + chr2_1:59027800-59027819 Msa0214540:intron 25.0%
!!! AATTTTAACCATGTAACTCA+CGG - chr2_1:59027910-59027929 None:intergenic 25.0%
! AGATTTAACAATTGATGAGA+AGG - chr2_1:59027968-59027987 None:intergenic 25.0%
!! TTTTGTCATGATTATAAGGT+TGG + chr2_1:59028146-59028165 Msa0214540:intron 25.0%
! TCAGTATCTCACTTTAAATA+TGG + chr2_1:59028179-59028198 Msa0214540:intron 25.0%
! CAGTATCTCACTTTAAATAT+GGG + chr2_1:59028180-59028199 Msa0214540:intron 25.0%
! ACAATGCATTATTATATGCA+GGG - chr2_1:59028440-59028459 None:intergenic 25.0%
! TTAATGATTACATGTTGGTA+AGG - chr2_1:59028653-59028672 None:intergenic 25.0%
! ATCATTAACCCTAGAAAATT+TGG + chr2_1:59028665-59028684 Msa0214540:intron 25.0%
! TCATTAACCCTAGAAAATTT+GGG + chr2_1:59028666-59028685 Msa0214540:intron 25.0%
!! GTTAAAACCCAAATTTTCTA+GGG - chr2_1:59028676-59028695 None:intergenic 25.0%
!! AGTTAAAACCCAAATTTTCT+AGG - chr2_1:59028677-59028696 None:intergenic 25.0%
!!! GGTTTTAACTGTTTTTTAGT+TGG + chr2_1:59028687-59028706 Msa0214540:intron 25.0%
!!! TGGTCAATAGTTTTTTACAA+AGG - chr2_1:59028724-59028743 None:intergenic 25.0%
!! CATAATTTGTAATGTCAAAG+TGG - chr2_1:59028744-59028763 None:intergenic 25.0%
!! TTTAGTTTCATTATGCTTCA+AGG - chr2_1:59028807-59028826 None:intergenic 25.0%
! AAATAATGCACAACTTTGAA+TGG - chr2_1:59028914-59028933 None:intergenic 25.0%
! AGCAAAGGAATAAAAATTGA+AGG - chr2_1:59029158-59029177 None:intergenic 25.0%
!!! TCATTCTATACTTTTTCAGA+TGG + chr2_1:59029668-59029687 Msa0214540:intron 25.0%
! TATATCTGATACAAATCCAA+AGG + chr2_1:59029785-59029804 Msa0214540:CDS 25.0%
!!! TTCAAAAAAGTTGATGAAGA+TGG + chr2_1:59029852-59029871 Msa0214540:CDS 25.0%
! GTTTCTTAAAGAGAAATTAG+TGG + chr2_1:59030205-59030224 Msa0214540:CDS 25.0%
!!! ATAACAAGTTGATTGAGAAT+AGG + chr2_1:59030240-59030259 Msa0214540:CDS 25.0%
! TCATTTGGAAGATTGAAATT+AGG - chr2_1:59030536-59030555 None:intergenic 25.0%
! TAATTTCAATCTTCCAAATG+AGG + chr2_1:59030535-59030554 Msa0214540:CDS 25.0%
!!! TGTTGATTTTTTCTATCATC+AGG - chr2_1:59030566-59030585 None:intergenic 25.0%
!! AAAAATGATGACTCCATTTT+TGG - chr2_1:59030710-59030729 None:intergenic 25.0%
!!! AAAATGGAGTCATCATTTTT+TGG + chr2_1:59030710-59030729 Msa0214540:CDS 25.0%
!!! GATGCAAAAAAATCACTTTT+TGG - chr2_1:59030776-59030795 None:intergenic 25.0%
!! TTTTGCATCTTTTACTGAAA+TGG + chr2_1:59030787-59030806 Msa0214540:CDS 25.0%
!! ATTTTTGTCCTTTTGTGTTT+TGG + chr2_1:59031360-59031379 Msa0214540:three_prime_UTR 25.0%
! TAAAATAGCCAAAACACAAA+AGG - chr2_1:59031371-59031390 None:intergenic 25.0%
! AAAAAAAGAGAAAAGCTAGT+GGG + chr2_1:59031392-59031411 Msa0214540:three_prime_UTR 25.0%
!! AATATCAATACAATTTTGGG+GGG - chr2_1:59031504-59031523 None:intergenic 25.0%
!! CCCAAAATTGTATTGATATT+AGG + chr2_1:59031504-59031523 Msa0214540:three_prime_UTR 25.0%
!! GCCTAATATCAATACAATTT+TGG - chr2_1:59031508-59031527 None:intergenic 25.0%
!! AAATTGTATTGATATTAGGC+CGG + chr2_1:59031508-59031527 Msa0214540:three_prime_UTR 25.0%
! ATATTATATCATGCAATGTC+TGG - chr2_1:59031567-59031586 None:intergenic 25.0%
AGAAAGAGAGAATAAAAGCA+GGG - chr2_1:59025536-59025555 None:intergenic 30.0%
ACTTCTACTCATAATCATTG+AGG + chr2_1:59025764-59025783 Msa0214540:five_prime_UTR 30.0%
!! TTTTGATGAAACTGATTCAG+TGG + chr2_1:59025862-59025881 Msa0214540:intron 30.0%
!!! TTTGAGGTGAGTTTTAGTTA+TGG + chr2_1:59025888-59025907 Msa0214540:intron 30.0%
!!! TTGAGGTGAGTTTTAGTTAT+GGG + chr2_1:59025889-59025908 Msa0214540:intron 30.0%
!!! CATTGTTTTTTTCCTCTTTC+GGG + chr2_1:59026105-59026124 Msa0214540:intron 30.0%
!!! AGTGATGATGGTTTTTTTCT+TGG + chr2_1:59026242-59026261 Msa0214540:intron 30.0%
!!! TTTTGGCTTTTAATTGTTGC+AGG + chr2_1:59026269-59026288 Msa0214540:intron 30.0%
AAATGATGAGGAGAAATTGA+AGG - chr2_1:59026399-59026418 None:intergenic 30.0%
ATACCTTGAGAAAAATGATG+AGG - chr2_1:59026411-59026430 None:intergenic 30.0%
AGTATGATTGTAATCTGTGA+AGG + chr2_1:59026677-59026696 Msa0214540:intron 30.0%
! TTGTAATCTGTGAAGGATTT+TGG + chr2_1:59026684-59026703 Msa0214540:intron 30.0%
!! GGATTTTGGTATTTGAAGTA+TGG + chr2_1:59026698-59026717 Msa0214540:intron 30.0%
ATAGAAAATAAGGCTGTGTT+TGG + chr2_1:59026778-59026797 Msa0214540:intron 30.0%
CCATAAACTTTCCATTCTTT+AGG - chr2_1:59026831-59026850 None:intergenic 30.0%
CCTAAAGAATGGAAAGTTTA+TGG + chr2_1:59026828-59026847 Msa0214540:intron 30.0%
AAAACATTCTTTCCCTTGTT+TGG + chr2_1:59026852-59026871 Msa0214540:intron 30.0%
! AAAAAGCAGGGAAAGATTTT+AGG - chr2_1:59026925-59026944 None:intergenic 30.0%
!!! AAAATCTTTCCCTGCTTTTT+TGG + chr2_1:59026925-59026944 Msa0214540:intron 30.0%
TAGTGAAAGTGAATAGAAAG+TGG - chr2_1:59027105-59027124 None:intergenic 30.0%
! GTTAAAGGAAAGAAAGTATG+AGG - chr2_1:59027171-59027190 None:intergenic 30.0%
GTAAGAGGAAAGATTGTTAA+AGG - chr2_1:59027186-59027205 None:intergenic 30.0%
ACATGTGAGCATAACTAAAT+TGG + chr2_1:59027551-59027570 Msa0214540:intron 30.0%
ACGTTGCATTATATATGTAG+AGG + chr2_1:59027579-59027598 Msa0214540:intron 30.0%
! TTTGGGTTAAAACAGTATCA+AGG + chr2_1:59027627-59027646 Msa0214540:intron 30.0%
TTGGGTTAAAACAGTATCAA+GGG + chr2_1:59027628-59027647 Msa0214540:intron 30.0%
ATAGTTAGGCATAATGGTTT+AGG - chr2_1:59027720-59027739 None:intergenic 30.0%
ACAACAATAGTTAGGCATAA+TGG - chr2_1:59027726-59027745 None:intergenic 30.0%
ACTAGTATGCATTTATGCTA+TGG + chr2_1:59027788-59027807 Msa0214540:intron 30.0%
! TTTAAAGTGAGATACTGACA+GGG - chr2_1:59028177-59028196 None:intergenic 30.0%
! ATTTAAAGTGAGATACTGAC+AGG - chr2_1:59028178-59028197 None:intergenic 30.0%
ACCTTATAAGGTGAATAAGT+GGG + chr2_1:59028391-59028410 Msa0214540:intron 30.0%
CAATGCATTATTATATGCAG+GGG - chr2_1:59028439-59028458 None:intergenic 30.0%
GACAATGCATTATTATATGC+AGG - chr2_1:59028441-59028460 None:intergenic 30.0%
CTCAATGATAAACTGACAAA+TGG - chr2_1:59028490-59028509 None:intergenic 30.0%
CATTTGTCAGTTTATCATTG+AGG + chr2_1:59028488-59028507 Msa0214540:intron 30.0%
CAATAATGTCTAGGAAAACA+TGG + chr2_1:59028583-59028602 Msa0214540:intron 30.0%
TAGGGTTAATGATTACATGT+TGG - chr2_1:59028658-59028677 None:intergenic 30.0%
!! TTGCTTGTTATATAAGCCTT+TGG + chr2_1:59029020-59029039 Msa0214540:intron 30.0%
AGGAATAAAAATTGAAGGAC+AGG - chr2_1:59029153-59029172 None:intergenic 30.0%
! AAAAAGCATGTAAGAAGCAA+AGG - chr2_1:59029173-59029192 None:intergenic 30.0%
TGGAAAAGACTACAATAACT+TGG + chr2_1:59029820-59029839 Msa0214540:CDS 30.0%
GATAATGTTGTTCACATATC+AGG + chr2_1:59030293-59030312 Msa0214540:CDS 30.0%
ATGAAATGAGATCTGCAAAA+TGG + chr2_1:59030393-59030412 Msa0214540:CDS 30.0%
TGAAATGAGATCTGCAAAAT+GGG + chr2_1:59030394-59030413 Msa0214540:CDS 30.0%
! TTTTACTGAAATGGCTAAGA+GGG + chr2_1:59030796-59030815 Msa0214540:CDS 30.0%
!! TTGTTTAGCCTTTTCTTTTG+AGG + chr2_1:59030832-59030851 Msa0214540:CDS 30.0%
! AAATCTTTCAAGTGGGAAAA+GGG + chr2_1:59030864-59030883 Msa0214540:CDS 30.0%
! TAGATTTTCTGATGTGTACA+TGG + chr2_1:59030889-59030908 Msa0214540:CDS 30.0%
TACAATCTGACTTAGATCAA+CGG - chr2_1:59031188-59031207 None:intergenic 30.0%
ACAATCTGGAAATCATTTCA+AGG + chr2_1:59031224-59031243 Msa0214540:three_prime_UTR 30.0%
TATAAGCAAAAGGAGATTTG+TGG + chr2_1:59031266-59031285 Msa0214540:three_prime_UTR 30.0%
! AACTTTTGGTAGGATTGATA+GGG + chr2_1:59031336-59031355 Msa0214540:three_prime_UTR 30.0%
GAAAAAAAGAGAAAAGCTAG+TGG + chr2_1:59031391-59031410 Msa0214540:three_prime_UTR 30.0%
GAAAGAGAGAATAAAAGCAG+GGG - chr2_1:59025535-59025554 None:intergenic 35.0%
GAGAAAGAGAGAATAAAAGC+AGG - chr2_1:59025537-59025556 None:intergenic 35.0%
TCATTTGTGTATCCACCATA+GGG + chr2_1:59025625-59025644 Msa0214540:five_prime_UTR 35.0%
!!! TTTTTGGTTTTACCCTATGG+TGG - chr2_1:59025640-59025659 None:intergenic 35.0%
AAGAGTAACATAGAGAAGTG+GGG - chr2_1:59025664-59025683 None:intergenic 35.0%
GAAGAGTAACATAGAGAAGT+GGG - chr2_1:59025665-59025684 None:intergenic 35.0%
TGAAGAGTAACATAGAGAAG+TGG - chr2_1:59025666-59025685 None:intergenic 35.0%
!! TGTTCTGAGGTTTAGAAAAG+TGG - chr2_1:59025712-59025731 None:intergenic 35.0%
!!! GAGTTTTAGTTATGGGTTCA+AGG + chr2_1:59025896-59025915 Msa0214540:intron 35.0%
!!! GTGGTGTTGTTTTTCATGTT+TGG + chr2_1:59026129-59026148 Msa0214540:intron 35.0%
ATTGAAGGTGAAGTTGAATG+TGG - chr2_1:59026384-59026403 None:intergenic 35.0%
!! TCTCCTCATCATTTTTCTCA+AGG + chr2_1:59026405-59026424 Msa0214540:five_prime_UTR 35.0%
!! CATTTTAGGTAGTATCTGTC+TGG + chr2_1:59026582-59026601 Msa0214540:intron 35.0%
TTCTTTCCTTGATCTATCCA+TGG - chr2_1:59026806-59026825 None:intergenic 35.0%
AGGAAAGAAAGCCTAAAGAA+TGG + chr2_1:59026817-59026836 Msa0214540:intron 35.0%
CTTACAAAGCAACCAAACAA+GGG - chr2_1:59026867-59026886 None:intergenic 35.0%
TCTTACAAAGCAACCAAACA+AGG - chr2_1:59026868-59026887 None:intergenic 35.0%
! TGGTCTTTTCACTCAAAAGT+TGG - chr2_1:59026971-59026990 None:intergenic 35.0%
GAAAGTGAATAGAAAGTGGA+AGG - chr2_1:59027101-59027120 None:intergenic 35.0%
!! GGAAAGTGAGATGATTTGTT+AGG - chr2_1:59027139-59027158 None:intergenic 35.0%
! GAAAGTATGAGGAAAGTGAA+TGG - chr2_1:59027160-59027179 None:intergenic 35.0%
ATCTTTCCTCTCACTTTCTT+TGG + chr2_1:59027207-59027226 Msa0214540:intron 35.0%
TTCACATGGCTCTTTACTTA+GGG - chr2_1:59027246-59027265 None:intergenic 35.0%
CATTATGTCAGAAGTTCACA+TGG - chr2_1:59027260-59027279 None:intergenic 35.0%
CATGTGAACTTCTGACATAA+TGG + chr2_1:59027258-59027277 Msa0214540:intron 35.0%
! GCACTAAAAAGGCATAACAA+GGG - chr2_1:59027410-59027429 None:intergenic 35.0%
! AGCACTAAAAAGGCATAACA+AGG - chr2_1:59027411-59027430 None:intergenic 35.0%
!!! TCGAGTACAACGTTGATTTT+TGG + chr2_1:59027609-59027628 Msa0214540:intron 35.0%
!!! CGAGTACAACGTTGATTTTT+GGG + chr2_1:59027610-59027629 Msa0214540:intron 35.0%
! TTGTTGCTTCAACTTTCAAG+TGG + chr2_1:59027870-59027889 Msa0214540:intron 35.0%
! TTTTTACACCGTGAGTTACA+TGG + chr2_1:59027899-59027918 Msa0214540:intron 35.0%
GTTCCTCAAACAAACACAAA+GGG - chr2_1:59028119-59028138 None:intergenic 35.0%
TGTTCCTCAAACAAACACAA+AGG - chr2_1:59028120-59028139 None:intergenic 35.0%
ATGCTGGATATGCATATCTA+AGG + chr2_1:59028251-59028270 Msa0214540:intron 35.0%
TGCTGGATATGCATATCTAA+GGG + chr2_1:59028252-59028271 Msa0214540:intron 35.0%
AATCCTAAGGATTATGAGTC+AGG + chr2_1:59028275-59028294 Msa0214540:intron 35.0%
TTTCCTGACTCATAATCCTT+AGG - chr2_1:59028281-59028300 None:intergenic 35.0%
TGGCTAGAATTCACCTTATA+AGG + chr2_1:59028379-59028398 Msa0214540:intron 35.0%
CACCTTATAAGGTGAATAAG+TGG + chr2_1:59028390-59028409 Msa0214540:intron 35.0%
CCTTATAAGGTGAATAAGTG+GGG + chr2_1:59028392-59028411 Msa0214540:intron 35.0%
CACGTACTAGAAAGAAAACA+AGG - chr2_1:59028880-59028899 None:intergenic 35.0%
!! CTTGTTTTCTTTCTAGTACG+TGG + chr2_1:59028878-59028897 Msa0214540:intron 35.0%
AGTGTTAGAAATTGCCATGT+TGG + chr2_1:59029060-59029079 Msa0214540:intron 35.0%
TTGCTTTAACACATAGATCG+AGG - chr2_1:59029486-59029505 None:intergenic 35.0%
TTCCTAGCTAATTTCTTGCT+TGG - chr2_1:59029720-59029739 None:intergenic 35.0%
!! TGCTCTAAGATGAAGAACTT+TGG - chr2_1:59029748-59029767 None:intergenic 35.0%
TCCAAAGGATGAAACAAACA+TGG + chr2_1:59029800-59029819 Msa0214540:CDS 35.0%
TCCATGTTTGTTTCATCCTT+TGG - chr2_1:59029804-59029823 None:intergenic 35.0%
TTCAGCATATGCACCTTTAA+CGG - chr2_1:59029943-59029962 None:intergenic 35.0%
! GAGAATAGGTTGAATCAAAG+TGG + chr2_1:59030254-59030273 Msa0214540:CDS 35.0%
CGATGCTATTGAACATAATG+TGG + chr2_1:59030433-59030452 Msa0214540:CDS 35.0%
! GAGACTTGTTCATCCAAAAA+TGG + chr2_1:59030694-59030713 Msa0214540:CDS 35.0%
! ATTCACAGAAACCTTTTGAG+TGG + chr2_1:59030740-59030759 Msa0214540:CDS 35.0%
! CTTTTACTGAAATGGCTAAG+AGG + chr2_1:59030795-59030814 Msa0214540:CDS 35.0%
AGCTTGAACCTCAAAAGAAA+AGG - chr2_1:59030843-59030862 None:intergenic 35.0%
TCAAGCTGAAATCTTTCAAG+TGG + chr2_1:59030856-59030875 Msa0214540:CDS 35.0%
! CAAGCTGAAATCTTTCAAGT+GGG + chr2_1:59030857-59030876 Msa0214540:CDS 35.0%
! GAAATCTTTCAAGTGGGAAA+AGG + chr2_1:59030863-59030882 Msa0214540:CDS 35.0%
ACAACAGTAAAACCAACAAC+TGG - chr2_1:59030977-59030996 None:intergenic 35.0%
!! TTACTGTTGTTCCTGGTTTT+AGG + chr2_1:59030987-59031006 Msa0214540:CDS 35.0%
! GTTTTACCAATCCTAAAACC+AGG - chr2_1:59031001-59031020 None:intergenic 35.0%
AAGAATCAACTCAAGGTGAA+AGG + chr2_1:59031052-59031071 Msa0214540:CDS 35.0%
GATTAACTCCTGTGTGAAAT+CGG - chr2_1:59031097-59031116 None:intergenic 35.0%
! GAACTTTTGGTAGGATTGAT+AGG + chr2_1:59031335-59031354 Msa0214540:three_prime_UTR 35.0%
GAAATGACGAAAAAAGACGC+TGG - chr2_1:59025493-59025512 None:intergenic 40.0%
AGAGAGATTTGAGAGCTCAA+GGG - chr2_1:59025566-59025585 None:intergenic 40.0%
GTCATTTGTGTATCCACCAT+AGG + chr2_1:59025624-59025643 Msa0214540:five_prime_UTR 40.0%
!!! GGGTTTTTGGTTTTACCCTA+TGG - chr2_1:59025643-59025662 None:intergenic 40.0%
AGAGTAACATAGAGAAGTGG+GGG - chr2_1:59025663-59025682 None:intergenic 40.0%
TCAATGTTTGCTCTGTTCTG+AGG - chr2_1:59025725-59025744 None:intergenic 40.0%
! GAGTAGAAGTGTGTGATGAA+GGG - chr2_1:59025754-59025773 None:intergenic 40.0%
! TGAGTAGAAGTGTGTGATGA+AGG - chr2_1:59025755-59025774 None:intergenic 40.0%
!! ACTGATTCAGTGGCTTTTTG+AGG + chr2_1:59025872-59025891 Msa0214540:intron 40.0%
!!! TTTTTTTCCTCTTTCGGGTG+TGG + chr2_1:59026110-59026129 Msa0214540:intron 40.0%
TGTTGTTCTAACACCAAACG+CGG - chr2_1:59026296-59026315 None:intergenic 40.0%
!! CTTTTTGGTCTGTTACCGTT+TGG + chr2_1:59026440-59026459 Msa0214540:intron 40.0%
! GTATCTGTCTGGAAAAGTGT+TGG + chr2_1:59026593-59026612 Msa0214540:intron 40.0%
TTGGTACCATGGATAGATCA+AGG + chr2_1:59026797-59026816 Msa0214540:intron 40.0%
! GTTTGGTTGCTTTGTAAGAG+TGG + chr2_1:59026869-59026888 Msa0214540:intron 40.0%
! CAGGGAAAGATTTTAGGCAT+GGG - chr2_1:59026919-59026938 None:intergenic 40.0%
!!! TCTTTCCCTGCTTTTTTGGA+CGG + chr2_1:59026929-59026948 Msa0214540:intron 40.0%
GTGAGAGGAAAGATTGTAAG+AGG - chr2_1:59027201-59027220 None:intergenic 40.0%
CTCTTTACTTAGGGTGTGTT+TGG - chr2_1:59027237-59027256 None:intergenic 40.0%
GTTCACATGGCTCTTTACTT+AGG - chr2_1:59027247-59027266 None:intergenic 40.0%
!! GTTGTAACGGATCTATCACA+AGG - chr2_1:59027447-59027466 None:intergenic 40.0%
! AGTATCAAGGGTTCTAGTCA+CGG + chr2_1:59027640-59027659 Msa0214540:intron 40.0%
CAAACAAACACAAAGGGCAA+GGG - chr2_1:59028113-59028132 None:intergenic 40.0%
TCAAACAAACACAAAGGGCA+AGG - chr2_1:59028114-59028133 None:intergenic 40.0%
TTGCCCTTTGTGTTTGTTTG+AGG + chr2_1:59028113-59028132 Msa0214540:intron 40.0%
GTCTAGATCTTCAAAGATGC+TGG + chr2_1:59028235-59028254 Msa0214540:intron 40.0%
GCATATCTAAGGGAATCCTA+AGG + chr2_1:59028262-59028281 Msa0214540:intron 40.0%
!! TTTTTAGTCAGGTAGCCTAG+TGG + chr2_1:59028359-59028378 Msa0214540:intron 40.0%
TAAGGTGAATTCTAGCCACT+AGG - chr2_1:59028377-59028396 None:intergenic 40.0%
CCCCACTTATTCACCTTATA+AGG - chr2_1:59028395-59028414 None:intergenic 40.0%
TCGAGGACTTTAGTAGTGAA+GGG - chr2_1:59029469-59029488 None:intergenic 40.0%
ATCGAGGACTTTAGTAGTGA+AGG - chr2_1:59029470-59029489 None:intergenic 40.0%
CACCAAGCAAGAAATTAGCT+AGG + chr2_1:59029715-59029734 Msa0214540:CDS 40.0%
GCTAGCATTTCAACCGTTAA+AGG + chr2_1:59029927-59029946 Msa0214540:CDS 40.0%
TCAATTCCATCAGGGTCAAA+AGG - chr2_1:59029984-59030003 None:intergenic 40.0%
CAGAAGCTTCAATTCCATCA+GGG - chr2_1:59029992-59030011 None:intergenic 40.0%
TCAGAAGCTTCAATTCCATC+AGG - chr2_1:59029993-59030012 None:intergenic 40.0%
AGCTGAATCGAAGGAGATAA+AGG + chr2_1:59030109-59030128 Msa0214540:CDS 40.0%
GCTGAATCGAAGGAGATAAA+GGG + chr2_1:59030110-59030129 Msa0214540:CDS 40.0%
AGAAGTTGGAATCACAGGTT+AGG + chr2_1:59030162-59030181 Msa0214540:CDS 40.0%
AGAACAGTAGCAAAATGGCT+AGG - chr2_1:59030326-59030345 None:intergenic 40.0%
GACGAAGAACAGTAGCAAAA+TGG - chr2_1:59030331-59030350 None:intergenic 40.0%
TCAGAAGAAGAACCAGTTGT+TGG + chr2_1:59030962-59030981 Msa0214540:CDS 40.0%
!!! GTTGGTTTTACTGTTGTTCC+TGG + chr2_1:59030980-59030999 Msa0214540:CDS 40.0%
!!! GTTGTTCCTGGTTTTAGGAT+TGG + chr2_1:59030992-59031011 Msa0214540:CDS 40.0%
!! TGAGTTGATTCTTCTGCATG+AGG - chr2_1:59031045-59031064 None:intergenic 40.0%
CATGCAGAAGAATCAACTCA+AGG + chr2_1:59031045-59031064 Msa0214540:CDS 40.0%
!! ATCATCGATTCGAGATCAGA+CGG + chr2_1:59031120-59031139 Msa0214540:three_prime_UTR 40.0%
TAATGTGCCCTACAACACAA+GGG + chr2_1:59031294-59031313 Msa0214540:three_prime_UTR 40.0%
AAAGGTTGTTCCCAATGCTA+TGG - chr2_1:59031419-59031438 None:intergenic 40.0%
GGGAAGAGAGAGAGAGTAAT+TGG - chr2_1:59025515-59025534 None:intergenic 45.0%
GAGAGAGATTTGAGAGCTCA+AGG - chr2_1:59025567-59025586 None:intergenic 45.0%
GGATACACAAATGACACAGC+TGG - chr2_1:59025619-59025638 None:intergenic 45.0%
! CATAGAGAAGTGGGGGTTTT+TGG - chr2_1:59025656-59025675 None:intergenic 45.0%
TAAGGCTGTGTTTGGTACCA+TGG + chr2_1:59026786-59026805 Msa0214540:intron 45.0%
! GCAGGGAAAGATTTTAGGCA+TGG - chr2_1:59026920-59026939 None:intergenic 45.0%
CCTTTCCGTCCAAAAAAGCA+GGG - chr2_1:59026937-59026956 None:intergenic 45.0%
TCCTTTCCGTCCAAAAAAGC+AGG - chr2_1:59026938-59026957 None:intergenic 45.0%
GGATCACCAAAGAAAGTGAG+AGG - chr2_1:59027216-59027235 None:intergenic 45.0%
!! GTAACGGATCTATCACAAGG+TGG - chr2_1:59027444-59027463 None:intergenic 45.0%
! GTATCAAGGGTTCTAGTCAC+GGG + chr2_1:59027641-59027660 Msa0214540:intron 45.0%
TTCTAGTCACGGGAAACACA+TGG + chr2_1:59027651-59027670 Msa0214540:intron 45.0%
ATTATTATATGCAGGGGCCG+GGG - chr2_1:59028433-59028452 None:intergenic 45.0%
CATTATTATATGCAGGGGCC+GGG - chr2_1:59028434-59028453 None:intergenic 45.0%
GCATTATTATATGCAGGGGC+CGG - chr2_1:59028435-59028454 None:intergenic 45.0%
ATGAGCATAGCTCAGTTGGT+AGG - chr2_1:59028463-59028482 None:intergenic 45.0%
TACCAACTGAGCTATGCTCA+TGG + chr2_1:59028462-59028481 Msa0214540:intron 45.0%
ACCAACTGAGCTATGCTCAT+GGG + chr2_1:59028463-59028482 Msa0214540:intron 45.0%
!! TTATGCTTCAAGGAGCGTTG+AGG - chr2_1:59028797-59028816 None:intergenic 45.0%
ACTTGGCATCTTGTCCAACA+TGG - chr2_1:59029077-59029096 None:intergenic 45.0%
AGTATCGCTTTCTCTGGTGA+AGG - chr2_1:59030086-59030105 None:intergenic 45.0%
CTGTGATTCCAACTTCTTCG+CGG - chr2_1:59030159-59030178 None:intergenic 45.0%
!! TCATCAGGAAGTGCCTCATT+TGG - chr2_1:59030551-59030570 None:intergenic 45.0%
AATTGCGCAAACGACGATCT+TGG - chr2_1:59030656-59030675 None:intergenic 45.0%
!! CACAGAAACCTTTTGAGTGG+TGG + chr2_1:59030743-59030762 Msa0214540:CDS 45.0%
GAAACTCTCCACCACTCAAA+AGG - chr2_1:59030754-59030773 None:intergenic 45.0%
GCATGAGGTAAACTTGACAC+TGG - chr2_1:59031030-59031049 None:intergenic 45.0%
CAGATTGTAACCACATCACG+CGG + chr2_1:59031199-59031218 Msa0214540:three_prime_UTR 45.0%
GCAAAAGGAGATTTGTGGTC+AGG + chr2_1:59031271-59031290 Msa0214540:three_prime_UTR 45.0%
GTAATGTGCCCTACAACACA+AGG + chr2_1:59031293-59031312 Msa0214540:three_prime_UTR 45.0%
TGTCCTTCCCTTGTGTTGTA+GGG - chr2_1:59031304-59031323 None:intergenic 45.0%
ATGTCCTTCCCTTGTGTTGT+AGG - chr2_1:59031305-59031324 None:intergenic 45.0%
TACAACACAAGGGAAGGACA+TGG + chr2_1:59031304-59031323 Msa0214540:three_prime_UTR 45.0%
!! CATGGCATGGACTGAACTTT+TGG + chr2_1:59031322-59031341 Msa0214540:three_prime_UTR 45.0%
!! GCATGGACTGAACTTTTGGT+AGG + chr2_1:59031326-59031345 Msa0214540:three_prime_UTR 45.0%
ATTGATATTAGGCCGGTGAC+AGG + chr2_1:59031515-59031534 Msa0214540:three_prime_UTR 45.0%
TTGATATTAGGCCGGTGACA+GGG + chr2_1:59031516-59031535 Msa0214540:three_prime_UTR 45.0%
!!! TATATATCATTTTTATAAAA+GGG + chr2_1:59027040-59027059 Msa0214540:intron 5.0%
GACACAGCTGGAAGAGAGAA+AGG - chr2_1:59025607-59025626 None:intergenic 50.0%
AACAACACCACACCCGAAAG+AGG - chr2_1:59026120-59026139 None:intergenic 50.0%
AATTGTTGCAGGACCGCGTT+TGG + chr2_1:59026280-59026299 Msa0214540:intron 50.0%
!!! CCCTGCTTTTTTGGACGGAA+AGG + chr2_1:59026934-59026953 Msa0214540:intron 50.0%
ACAAACACAAAGGGCAAGGG+CGG - chr2_1:59028110-59028129 None:intergenic 50.0%
! GTGAATAAGTGGGGTGTCCA+CGG + chr2_1:59028401-59028420 Msa0214540:intron 50.0%
TCCCATGAGCATAGCTCAGT+TGG - chr2_1:59028467-59028486 None:intergenic 50.0%
!! TCAAGGAGCGTTGAGGCAAT+AGG - chr2_1:59028790-59028809 None:intergenic 50.0%
!! TTGCTTGGTGTCACTGCTGA+AGG - chr2_1:59029705-59029724 None:intergenic 50.0%
! CAGACACCTTTTGACCCTGA+TGG + chr2_1:59029975-59029994 Msa0214540:CDS 50.0%
GATACTCGCAGCTGAATCGA+AGG + chr2_1:59030100-59030119 Msa0214540:CDS 50.0%
CTTCTTCGCGGTAATCTCGT+AGG - chr2_1:59030147-59030166 None:intergenic 50.0%
CGAGATTACCGCGAAGAAGT+TGG + chr2_1:59030148-59030167 Msa0214540:CDS 50.0%
CGCGAAGAAGTTGGAATCAC+AGG + chr2_1:59030157-59030176 Msa0214540:CDS 50.0%
TGCTACTGTTCTTCGTCACG+CGG + chr2_1:59030334-59030353 Msa0214540:CDS 50.0%
CAGATTGTAACCGCGTGATG+TGG - chr2_1:59031212-59031231 None:intergenic 50.0%
CACATCACGCGGTTACAATC+TGG + chr2_1:59031210-59031229 Msa0214540:three_prime_UTR 50.0%
AGCTAGTGGGACCATAGCAT+TGG + chr2_1:59031405-59031424 Msa0214540:three_prime_UTR 50.0%
GCTAGTGGGACCATAGCATT+GGG + chr2_1:59031406-59031425 Msa0214540:three_prime_UTR 50.0%
TGATATTAGGCCGGTGACAG+GGG + chr2_1:59031517-59031536 Msa0214540:three_prime_UTR 50.0%
! GCTGCGAGTATCGCTTTCTC+TGG - chr2_1:59030092-59030111 None:intergenic 55.0%
CGTCGTTTGCGCAATTCTGC+AGG + chr2_1:59030660-59030679 Msa0214540:CDS 55.0%
AAAGGATCACGATCGCGTGC+TGG + chr2_1:59031070-59031089 Msa0214540:CDS 55.0%
! GTGCTGGTCCGATTTCACAC+AGG + chr2_1:59031086-59031105 Msa0214540:CDS 55.0%
GTGCCCTACAACACAAGGGA+AGG + chr2_1:59031298-59031317 Msa0214540:three_prime_UTR 55.0%
CACAAGGGAAGGACATGGCA+TGG + chr2_1:59031309-59031328 Msa0214540:three_prime_UTR 55.0%
TATTAGGCCGGTGACAGGGG+TGG + chr2_1:59031520-59031539 Msa0214540:three_prime_UTR 60.0%
AGCTAGACCACCCCTGTCAC+CGG - chr2_1:59031530-59031549 None:intergenic 60.0%
GGTGTCCACGGTTCGAACCC+CGG + chr2_1:59028413-59028432 Msa0214540:intron 65.0%
AGGGGCCGGGGTTCGAACCG+TGG - chr2_1:59028421-59028440 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 59025460 59031653 59025460 ID=Msa0214540;Name=Msa0214540
chr2_1 mRNA 59025460 59031653 59025460 ID=Msa0214540-mRNA-1;Parent=Msa0214540;Name=Msa0214540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=462|1|1|1|0|0.33|3|539|475
chr2_1 exon 59025460 59025785 59025460 ID=Msa0214540-mRNA-1:exon:16230;Parent=Msa0214540-mRNA-1
chr2_1 exon 59026291 59026426 59026291 ID=Msa0214540-mRNA-1:exon:16231;Parent=Msa0214540-mRNA-1
chr2_1 exon 59029687 59031653 59029687 ID=Msa0214540-mRNA-1:exon:16232;Parent=Msa0214540-mRNA-1
chr2_1 five_prime_UTR 59025460 59025785 59025460 ID=Msa0214540-mRNA-1:five_prime_utr;Parent=Msa0214540-mRNA-1
chr2_1 five_prime_UTR 59026291 59026426 59026291 ID=Msa0214540-mRNA-1:five_prime_utr;Parent=Msa0214540-mRNA-1
chr2_1 CDS 59029687 59031114 59029687 ID=Msa0214540-mRNA-1:cds;Parent=Msa0214540-mRNA-1
chr2_1 three_prime_UTR 59031115 59031653 59031115 ID=Msa0214540-mRNA-1:three_prime_utr;Parent=Msa0214540-mRNA-1
Gene Sequence

>Msa0214540

ATGGAATCAATGAAACCTTCAGCAGTGACACCAAGCAAGAAATTAGCTAGGAATTTCGCCAAAGTTCTTCATCTTAGAGCATTTTTGAAGAATGTTACTATATCTGATACAAATCCAAAGGATGAAACAAACATGGAAAAGACTACAATAACTTGGTCTGAATCATTCAAAAAAGTTGATGAAGATGGAGAGATTGAAGAACAAAGAGTTGCAACAGAAGCACTTCTTTCAAAGATTTTTGCTAGCATTTCAACCGTTAAAGGTGCATATGCTGAACTGCAACATTTTCAGACACCTTTTGACCCTGATGGAATTGAAGCTTCTGATAAACTGCTAGTTTCTGAGTTGAAGCATTTATCTGAGCTAAAACAATGTTACTTGAAGAAACAATTTGATCCTTCACCAGAGAAAGCGATACTCGCAGCTGAATCGAAGGAGATAAAGGGTGTCATAAAAACCTACGAGATTACCGCGAAGAAGTTGGAATCACAGGTTAGGCTCAAAGATTCTGAGATTATGTTTCTTAAAGAGAAATTAGTGGAAGCTAATAGTCATAACAAGTTGATTGAGAATAGGTTGAATCAAAGTGGATCATTATCAGTACTTGATAATGTTGTTCACATATCAGGATTAAGTCCTAGCCATTTTGCTACTGTTCTTCGTCACGCGGTTAGATCGATTCGAAACTTTGTGAAGTTGATTGTTGATGAAATGAGATCTGCAAAATGGGATATTGATGCTGCTGTCGATGCTATTGAACATAATGTGGTTTATATGATTGAAGATCACAAGTGTTTCACAATTGAATCTTTTGTTTGCAGAGAAATGTTTGATGCATTTCACTTTCCTAATTTCAATCTTCCAAATGAGGCACTTCCTGATGATAGAAAAAATCAACAAAATTGGTTCTTTGAAAAGTTCAACGAGTTGAAATCAACGAAAGCTAAAGACTTTCTTGCTGAGAAACCAAGATCGTCGTTTGCGCAATTCTGCAGGAACAAGTATTTGAGACTTGTTCATCCAAAAATGGAGTCATCATTTTTTGGCAACATGATTCACAGAAACCTTTTGAGTGGTGGAGAGTTTCCAAAAAGTGATTTTTTTGCATCTTTTACTGAAATGGCTAAGAGGGTTTATCTCTTGCATTGTTTAGCCTTTTCTTTTGAGGTTCAAGCTGAAATCTTTCAAGTGGGAAAAGGGTGTAGATTTTCTGATGTGTACATGGAAAGTGTGAATGATGAAATGTTTGTGTTTTCAGACAAGACAGTTGTTGAATCAGAAGAAGAACCAGTTGTTGGTTTTACTGTTGTTCCTGGTTTTAGGATTGGTAAAACTGTTTTCCAGTGTCAAGTTTACCTCATGCAGAAGAATCAACTCAAGGTGAAAGGATCACGATCGCGTGCTGGTCCGATTTCACACAGGAGTTAA
Protein sequence

>Msa0214540

MESMKPSAVTPSKKLARNFAKVLHLRAFLKNVTISDTNPKDETNMEKTTITWSESFKKVDEDGEIEEQRVATEALLSKIFASISTVKGAYAELQHFQTPFDPDGIEASDKLLVSELKHLSELKQCYLKKQFDPSPEKAILAAESKEIKGVIKTYEITAKKLESQVRLKDSEIMFLKEKLVEANSHNKLIENRLNQSGSLSVLDNVVHISGLSPSHFATVLRHAVRSIRNFVKLIVDEMRSAKWDIDAAVDAIEHNVVYMIEDHKCFTIESFVCREMFDAFHFPNFNLPNEALPDDRKNQQNWFFEKFNELKSTKAKDFLAEKPRSSFAQFCRNKYLRLVHPKMESSFFGNMIHRNLLSGGEFPKSDFFASFTEMAKRVYLLHCLAFSFEVQAEIFQVGKGCRFSDVYMESVNDEMFVFSDKTVVESEEEPVVGFTVVPGFRIGKTVFQCQVYLMQKNQLKVKGSRSRAGPISHRS*