AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0332630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0332630 MtrunA17_Chr2g0315531 97.246 472 11 1 4 473 1 472 0.0 946
Msa0332630 MtrunA17_Chr8g0359791 66.500 400 119 7 70 465 32 420 1.11e-179 509
Msa0332630 MtrunA17_Chr8g0379551 46.004 463 235 7 1 453 14 471 2.45e-128 380
Msa0332630 MtrunA17_Chr4g0011611 41.103 399 217 5 62 453 25 412 1.30e-99 305
Msa0332630 MtrunA17_Chr7g0230481 32.242 397 244 5 69 453 139 522 6.06e-59 202
Msa0332630 MtrunA17_Chr3g0103691 31.188 404 245 10 73 457 92 481 2.94e-51 181
Msa0332630 MtrunA17_Chr5g0432511 31.139 395 230 9 86 473 33 392 1.61e-50 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0332630 AT1G53380.2 52.723 459 202 7 1 453 1 450 2.84e-168 482
Msa0332630 AT1G53380.4 52.723 459 202 7 1 453 1 450 2.84e-168 482
Msa0332630 AT1G53380.1 52.723 459 202 7 1 453 1 450 2.84e-168 482
Msa0332630 AT1G53380.3 52.723 459 202 7 1 453 1 450 2.84e-168 482
Msa0332630 AT1G53380.5 52.723 459 202 7 1 453 1 450 2.84e-168 482
Msa0332630 AT3G14870.1 50.858 466 211 5 1 453 5 465 3.05e-165 475
Msa0332630 AT3G14870.4 50.858 466 211 5 1 453 1 461 4.58e-165 474
Msa0332630 AT3G14870.5 50.858 466 211 5 1 453 1 461 4.58e-165 474
Msa0332630 AT3G14870.2 50.858 466 211 5 1 453 1 461 4.58e-165 474
Msa0332630 AT3G14870.3 50.858 466 211 5 1 453 2 462 4.59e-165 474
Msa0332630 AT1G29300.1 42.678 478 230 9 1 457 1 455 6.48e-113 341
Msa0332630 AT2G45260.1 40.852 399 223 3 62 453 26 418 7.22e-102 311
Msa0332630 AT3G60680.1 33.247 385 241 4 74 453 120 493 4.81e-61 207
Msa0332630 AT4G34080.1 37.143 280 169 2 62 334 2 281 6.17e-56 187
Msa0332630 AT2G30380.1 33.069 378 210 4 76 453 76 410 3.27e-54 187
Msa0332630 AT4G33320.1 35.315 286 177 3 62 339 2 287 1.17e-49 171
Msa0332630 AT5G58960.2 29.087 416 245 9 73 456 86 483 1.10e-47 171
Msa0332630 AT5G58960.3 29.087 416 245 9 73 456 86 483 1.10e-47 171
Msa0332630 AT5G58960.1 30.000 410 249 10 73 456 161 558 4.58e-47 171
Msa0332630 AT2G32130.1 45.161 124 68 0 73 196 34 157 7.18e-27 106
Msa0332630 AT4G36100.1 45.098 102 53 1 62 160 2 103 2.25e-20 90.5

Find 116 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATGGGTCAGTTATTT+TGG 0.059773 2_4:-49710542 None:intergenic
GCCTAATATCAATACAATTT+TGG 0.077216 2_4:-49710345 None:intergenic
AGAAAATGGGTCAGTTATTC+CGG 0.254483 2_4:-49710506 None:intergenic
TCCATGTTTGTTTCATCCTT+TGG 0.256313 2_4:-49708641 None:intergenic
CCCAAAATTGTATTGATATT+AGG 0.269358 2_4:+49710344 Msa0332630:three_prime_UTR
TCATTTGGAAGATTGAAATT+AGG 0.272865 2_4:-49709373 None:intergenic
GCTAGCATTTCAACGGTTAA+AGG 0.286606 2_4:+49708767 Msa0332630:CDS
GATAATGTTGTTCACATATC+AGG 0.291769 2_4:+49709133 Msa0332630:CDS
ATTTAATGTTATATTGTATT+GGG 0.294419 2_4:-49710588 None:intergenic
TTTCTATAAGCAAATGTAAA+AGG 0.307592 2_4:+49710095 Msa0332630:three_prime_UTR
TATTTAATGTTATATTGTAT+TGG 0.309528 2_4:-49710589 None:intergenic
ATGTCCTTCCCTTGTGTTGT+AGG 0.319600 2_4:-49710141 None:intergenic
CATGGCATGGACTGAACTTT+TGG 0.327379 2_4:+49710161 Msa0332630:three_prime_UTR
AGCTGAATCGAAGGAGATAA+AGG 0.344297 2_4:+49708949 Msa0332630:CDS
ATGAAATGAGATCTGCAAAA+TGG 0.347278 2_4:+49709233 Msa0332630:CDS
TTCCTAGCTAATTTCTTGCT+TGG 0.369258 2_4:-49708557 None:intergenic
TCTTAGCCGTCGATCTAAAT+CGG 0.369940 2_4:+49710012 Msa0332630:three_prime_UTR
GAGAAAGAGAGAATAAAAGC+AGG 0.390355 2_4:-49704013 None:intergenic
AGTTGTATTGAAAATTGAAA+TGG 0.391384 2_4:-49710556 None:intergenic
AATTGCGCAAACGACGATCT+TGG 0.395372 2_4:-49709493 None:intergenic
TCATCAGGAAGTGCCTCATT+TGG 0.398030 2_4:-49709388 None:intergenic
GACGAAGAACAGTAGCAAAA+TGG 0.401046 2_4:-49709168 None:intergenic
GATTAACTCCTGTGTGAAAT+CGG 0.402654 2_4:-49709928 None:intergenic
GAAATCTTTCAAGTGGGAAA+AGG 0.412349 2_4:+49709703 Msa0332630:CDS
AATTGTTGCAGGACCGCGTT+TGG 0.416860 2_4:+49704771 Msa0332630:intron
TCAGAAGCTTCAATTCCATC+AGG 0.419938 2_4:-49708830 None:intergenic
GAATCATATATAATATAGTT+AGG 0.423631 2_4:+49710436 Msa0332630:three_prime_UTR
CGTCGTTTGCGCAATTCTGC+AGG 0.425402 2_4:+49709500 Msa0332630:CDS
TTGCTTGGTGTCACTGCTGA+AGG 0.427239 2_4:-49708542 None:intergenic
GTTTCTTAAAGAGAAATTAG+TGG 0.430754 2_4:+49709045 Msa0332630:CDS
TCAGAAGAAGAACCAGTTGT+TGG 0.431414 2_4:+49709802 Msa0332630:CDS
GAAACTCTCCACCACTCAAA+AGG 0.438973 2_4:-49709591 None:intergenic
GTTGTATTGAAAATTGAAAT+GGG 0.439494 2_4:-49710555 None:intergenic
CGCGAAGAAGTTGGAATCAC+AGG 0.450315 2_4:+49708997 Msa0332630:CDS
GAAAGTGGAATATATTGTAT+TGG 0.452819 2_4:-49710630 None:intergenic
TGTCCTTCCCTTGTGTTGTA+GGG 0.453529 2_4:-49710140 None:intergenic
CGAGATTACCGCGAAGAAGT+TGG 0.455237 2_4:+49708988 Msa0332630:CDS
AGAGTAGTAACATAGATAAG+TGG 0.456069 2_4:-49704143 None:intergenic
GAGTAGTAACATAGATAAGT+GGG 0.457277 2_4:-49704142 None:intergenic
ATATTATATCATGCAATGTC+TGG 0.464188 2_4:-49710404 None:intergenic
GTAAAAGGAGATTTGTGGTC+AGG 0.467104 2_4:+49710110 Msa0332630:three_prime_UTR
GAAAATGGGTCAGTTATTCC+GGG 0.468412 2_4:-49710505 None:intergenic
TAATTTCAATCTTCCAAATG+AGG 0.473527 2_4:+49709375 Msa0332630:CDS
TGCTCTAAGATGAAGAACTT+TGG 0.476082 2_4:-49708585 None:intergenic
CTAAGCAAACACGAGTAGTT+CGG 0.476855 2_4:+49703928 None:intergenic
AGCTTGAACCTCAAAAGAAA+AGG 0.479323 2_4:-49709680 None:intergenic
AGCTAGTGGGACCATAGCAT+TGG 0.490242 2_4:+49710245 Msa0332630:three_prime_UTR
TGTTCTGAGGTTTAGAAAAG+TGG 0.494945 2_4:-49704192 None:intergenic
AAATCTTTCAAGTGGGAAAA+GGG 0.495316 2_4:+49709704 Msa0332630:CDS
ACAACATAGAATCCATTTCA+AGG 0.496599 2_4:+49710057 Msa0332630:three_prime_UTR
TCAATGTTTGCTCTGTTCTG+AGG 0.496959 2_4:-49704205 None:intergenic
TCAATTCCATCAGGGTCAAA+AGG 0.497708 2_4:-49708821 None:intergenic
TAAAATAGCCAAAACACAAA+AGG 0.498057 2_4:-49710207 None:intergenic
GCTGCGAGTATCGCTTTCTC+TGG 0.498611 2_4:-49708929 None:intergenic
CTGTGATTCCAACTTCTTCG+CGG 0.499296 2_4:-49708996 None:intergenic
GACACAGCTGGAAGTGAGAA+AGG 0.502027 2_4:-49704084 None:intergenic
AGAAAGAGAGAATAAAAGCA+GGG 0.503857 2_4:-49704012 None:intergenic
ATTGATATTAGGCCGGTGAC+AGG 0.504472 2_4:+49710355 Msa0332630:three_prime_UTR
ACAACAGTAAAACCAACAAC+TGG 0.508318 2_4:-49709814 None:intergenic
TGAAATGAGATCTGCAAAAT+GGG 0.517744 2_4:+49709234 Msa0332630:CDS
AGAAGTTGGAATCACAGGTT+AGG 0.521372 2_4:+49709002 Msa0332630:CDS
TGAGTAGAAGTGTGTGATGA+AGG 0.521621 2_4:-49704235 None:intergenic
TAGTATTACTCCCTTCGTCC+CGG 0.526846 2_4:+49710487 Msa0332630:three_prime_UTR
TTGATATTAGGCCGGTGACA+GGG 0.531815 2_4:+49710356 Msa0332630:three_prime_UTR
GCTGAATCGAAGGAGATAAA+GGG 0.535338 2_4:+49708950 Msa0332630:CDS
CTTAGCCGTCGATCTAAATC+GGG 0.535991 2_4:+49710013 Msa0332630:three_prime_UTR
AAACACGAGTAGTTCGGATT+CGG 0.539101 2_4:+49703934 None:intergenic
GCTAGTGGGACCATAGCATT+GGG 0.540918 2_4:+49710246 Msa0332630:three_prime_UTR
CTTCTTCGCGGTAATCTCGT+AGG 0.542317 2_4:-49708984 None:intergenic
AAATGATGAGGAGAAATTGA+AGG 0.550074 2_4:-49704887 None:intergenic
TCATTTGTGTATCCACCAAA+GGG 0.550796 2_4:+49704105 Msa0332630:five_prime_UTR
AGCTAGACCACCCCTGTCAC+CGG 0.551001 2_4:-49710367 None:intergenic
TGGAAAAGACTACAATAACT+TGG 0.552801 2_4:+49708660 Msa0332630:CDS
GTCATTTGTGTATCCACCAA+AGG 0.558935 2_4:+49704104 Msa0332630:five_prime_UTR
GGATACACAAATGACACAGC+TGG 0.559609 2_4:-49704096 None:intergenic
AAATTGTATTGATATTAGGC+CGG 0.563272 2_4:+49710348 Msa0332630:three_prime_UTR
AAGAATCACATCAAGGTGAA+AGG 0.566762 2_4:+49709892 Msa0332630:CDS
AAAGGTTGTTCCCAATGCTA+TGG 0.567458 2_4:-49710256 None:intergenic
TCAAGCTGAAATCTTTCAAG+TGG 0.572316 2_4:+49709696 Msa0332630:CDS
ATGCAAGAGATAAACCCTCT+TGG 0.574268 2_4:-49709650 None:intergenic
AAGGTGAAAGGATCGCGTGC+TGG 0.574947 2_4:+49709904 Msa0332630:CDS
CACAAGGGAAGGACATGGCA+TGG 0.575022 2_4:+49710148 Msa0332630:three_prime_UTR
ATAACAAGTTGATTGAGAAG+AGG 0.576898 2_4:+49709080 Msa0332630:CDS
TGATATTAGGCCGGTGACAG+GGG 0.580443 2_4:+49710357 Msa0332630:three_prime_UTR
GTCAGTTATTCCGGGACGAA+GGG 0.581045 2_4:-49710497 None:intergenic
CAAATGTAAAAGGAGATTTG+TGG 0.587350 2_4:+49710105 Msa0332630:three_prime_UTR
GAGAAGAGGTTGAATCAAAG+TGG 0.590872 2_4:+49709094 Msa0332630:CDS
AGTAGTAACATAGATAAGTG+GGG 0.591109 2_4:-49704141 None:intergenic
ACTTCTACTCATAGTCATTG+AGG 0.593987 2_4:+49704247 Msa0332630:five_prime_UTR
GGTCAGTTATTCCGGGACGA+AGG 0.594830 2_4:-49710498 None:intergenic
GAAAGAGAGAATAAAAGCAG+GGG 0.596993 2_4:-49704011 None:intergenic
ATCATCGATTCGAGATCAGA+CGG 0.598111 2_4:+49709954 Msa0332630:three_prime_UTR
CAAGCTGAAATCTTTCAAGT+GGG 0.598623 2_4:+49709697 Msa0332630:CDS
TCCAAAGGATGAAACAAACA+TGG 0.604906 2_4:+49708640 Msa0332630:CDS
GATACTCGCAGCTGAATCGA+AGG 0.611880 2_4:+49708940 Msa0332630:CDS
CGATGCTATTGAACATAATG+TGG 0.612500 2_4:+49709273 Msa0332630:CDS
CAGAAGCTTCAATTCCATCA+GGG 0.612641 2_4:-49708829 None:intergenic
AGTATCGCTTTCTCTGGTGA+AGG 0.613880 2_4:-49708923 None:intergenic
TGCTACTGTTCTTCGTCACG+CGG 0.615594 2_4:+49709174 Msa0332630:CDS
TATATCTGATACAAATCCAA+AGG 0.615715 2_4:+49708625 Msa0332630:CDS
TGATGTGATTCTTCTGCATG+AGG 0.623145 2_4:-49709882 None:intergenic
TATTAGGCCGGTGACAGGGG+TGG 0.625854 2_4:+49710360 Msa0332630:three_prime_UTR
CATGCAGAAGAATCACATCA+AGG 0.633754 2_4:+49709885 Msa0332630:CDS
GTAGTAACATAGATAAGTGG+GGG 0.635429 2_4:-49704140 None:intergenic
CACCAAGCAAGAAATTAGCT+AGG 0.637970 2_4:+49708555 Msa0332630:CDS
AGAACAGTAGCAAAATGGCT+AGG 0.639681 2_4:-49709163 None:intergenic
GTGCCCTACAACACAAGGGA+AGG 0.641725 2_4:+49710137 Msa0332630:three_prime_UTR
TACAACCCGATTTAGATCGA+CGG 0.641967 2_4:-49710018 None:intergenic
GTAATGTGCCCTACAACACA+AGG 0.646598 2_4:+49710132 Msa0332630:three_prime_UTR
TATGTTGTAACTGTGTCGCA+TGG 0.648760 2_4:-49710042 None:intergenic
ATTGAAGGTGAAGTTGAATG+TGG 0.648761 2_4:-49704872 None:intergenic
GAGTAGAAGTGTGTGATGAA+GGG 0.654118 2_4:-49704234 None:intergenic
GTGCTGGTCCGATTTCACAC+AGG 0.697518 2_4:+49709920 Msa0332630:CDS
TACAACACAAGGGAAGGACA+TGG 0.699467 2_4:+49710143 Msa0332630:three_prime_UTR
TGTTGTTCTAACACCAAACG+CGG 0.717628 2_4:-49704784 None:intergenic
TAATGTGCCCTACAACACAA+GGG 0.747709 2_4:+49710133 Msa0332630:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATATATAAATATT+TGG + chr2_4:49704712-49704731 Msa0332630:intron 0.0%
!!! TTTGTTTTATAAAAAGATAA+AGG - chr2_4:49704311-49704330 None:intergenic 10.0%
!!! TTTTGTATAATAAAAAATGT+GGG - chr2_4:49705382-49705401 None:intergenic 10.0%
!!! ATTTTGTATAATAAAAAATG+TGG - chr2_4:49705383-49705402 None:intergenic 10.0%
!! TATATATGAATTTCTAAATT+TGG + chr2_4:49707717-49707736 Msa0332630:intron 10.0%
!! ATTTAATGTTATATTGTATT+GGG - chr2_4:49710591-49710610 None:intergenic 10.0%
!! TATTTAATGTTATATTGTAT+TGG - chr2_4:49710592-49710611 None:intergenic 10.0%
!! AAAAGATAAAGGAAAAAATT+GGG - chr2_4:49704300-49704319 None:intergenic 15.0%
!! AAAAAGATAAAGGAAAAAAT+TGG - chr2_4:49704301-49704320 None:intergenic 15.0%
!! ATACTAACAATGAAAATAAA+GGG - chr2_4:49704656-49704675 None:intergenic 15.0%
!! AATACTAACAATGAAAATAA+AGG - chr2_4:49704657-49704676 None:intergenic 15.0%
!!! AACTATTATTACTACATTTT+AGG + chr2_4:49705059-49705078 Msa0332630:intron 15.0%
!!! AAATTTGCAATGTTTATTTT+AGG + chr2_4:49705111-49705130 Msa0332630:intron 15.0%
!!! TTTTATCATAAACCATATTT+CGG + chr2_4:49705976-49705995 Msa0332630:intron 15.0%
!! ATATATTTATCACAAATACA+AGG - chr2_4:49706096-49706115 None:intergenic 15.0%
!! ATAAATTTACAATAATGTCT+AGG + chr2_4:49706466-49706485 Msa0332630:intron 15.0%
!! ATATATAATTACTTGATTGA+TGG + chr2_4:49706751-49706770 Msa0332630:intron 15.0%
!! TATATAATTACTTGATTGAT+GGG + chr2_4:49706752-49706771 Msa0332630:intron 15.0%
!!! TTTAGTTTCATTATATTTCA+AGG - chr2_4:49706795-49706814 None:intergenic 15.0%
!!! ATTTTTTTTGCCTTTAATTT+CGG - chr2_4:49707222-49707241 None:intergenic 15.0%
!! CATCTATCTATAAAAAAAAA+AGG - chr2_4:49708267-49708286 None:intergenic 15.0%
!! ATAGAAAAAATCAACAAAAT+TGG + chr2_4:49709410-49709429 Msa0332630:CDS 15.0%
!!! AAAAAGATTCTAAAAGAAAA+AGG - chr2_4:49710277-49710296 None:intergenic 15.0%
!! GAATCATATATAATATAGTT+AGG + chr2_4:49710436-49710455 Msa0332630:three_prime_UTR 15.0%
!! AATACTAAAAAAAGAAAAAG+AGG - chr2_4:49710474-49710493 None:intergenic 15.0%
!!! GTTTTTTTATTATCTTCTGT+AGG + chr2_4:49704427-49704446 Msa0332630:intron 20.0%
!!! ATATAAATATTTGGTGATGA+TGG + chr2_4:49704721-49704740 Msa0332630:intron 20.0%
!!! AGGTATGTTTAATTTCTTTT+TGG + chr2_4:49704916-49704935 Msa0332630:intron 20.0%
!! TCTGATAATACATGTTTATT+AGG + chr2_4:49705145-49705164 Msa0332630:intron 20.0%
!!! GGACATTTTTGTAATTTTAA+AGG + chr2_4:49705210-49705229 Msa0332630:intron 20.0%
!!! AGTATAAAAAAGCACTAAAA+AGG - chr2_4:49705453-49705472 None:intergenic 20.0%
!! TTAATGCATATTAGTTGTAA+CGG - chr2_4:49705492-49705511 None:intergenic 20.0%
!! ACAACTAATATGCATTAATA+TGG + chr2_4:49705494-49705513 Msa0332630:intron 20.0%
!! CAACTAATATGCATTAATAT+GGG + chr2_4:49705495-49705514 Msa0332630:intron 20.0%
!! CAAACAATATATGTAAAGTA+TGG - chr2_4:49705534-49705553 None:intergenic 20.0%
!! AATAATGACATCAATAGTTA+AGG - chr2_4:49705767-49705786 None:intergenic 20.0%
!! TAAATGCTAAATAAGATGTT+TGG + chr2_4:49705871-49705890 Msa0332630:intron 20.0%
!!! TATCTTTTGTCATGATTATA+AGG + chr2_4:49706179-49706198 Msa0332630:intron 20.0%
!!! TTGTGCATTATTTTTTATTC+TGG + chr2_4:49706908-49706927 Msa0332630:intron 20.0%
!!! TTTTTATTCTGGTATAAACA+AGG + chr2_4:49706919-49706938 Msa0332630:intron 20.0%
!!! TTTTTTTTGCCTTTAATTTC+GGG - chr2_4:49707221-49707240 None:intergenic 20.0%
!!! GAAGATTTTTAGTAATCAAT+TGG - chr2_4:49707295-49707314 None:intergenic 20.0%
!! TATGAATTTCTAAATTTGGT+AGG + chr2_4:49707721-49707740 Msa0332630:intron 20.0%
!!! TAATGACAATATCTTTTACT+AGG - chr2_4:49708432-49708451 None:intergenic 20.0%
!! TTTCTATAAGCAAATGTAAA+AGG + chr2_4:49710095-49710114 Msa0332630:three_prime_UTR 20.0%
!!! TAATATCAATACAATTTTGG+GGG - chr2_4:49710345-49710364 None:intergenic 20.0%
!!! CTAATATCAATACAATTTTG+GGG - chr2_4:49710346-49710365 None:intergenic 20.0%
!!! CCTAATATCAATACAATTTT+GGG - chr2_4:49710347-49710366 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr2_4:49710522-49710541 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - chr2_4:49710558-49710577 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr2_4:49710559-49710578 None:intergenic 20.0%
!!! TTAACGTTGTTGTTGTTTTT+TGG + chr2_4:49704556-49704575 Msa0332630:intron 25.0%
!!! TCATTGTTTTTTTCCTCTTT+CGG + chr2_4:49704588-49704607 Msa0332630:intron 25.0%
!!! GTTTTTTTCTTGGTTCATTT+TGG + chr2_4:49704743-49704762 Msa0332630:intron 25.0%
! GTAAAAATGCAAAAACCAAA+CGG - chr2_4:49704949-49704968 None:intergenic 25.0%
! AATATGATTGTAATCTGTGA+AGG + chr2_4:49705168-49705187 Msa0332630:intron 25.0%
! TATATGTAAAGTATGGCTAT+TGG - chr2_4:49705527-49705546 None:intergenic 25.0%
!! TTATGCAATGGCTATATTTT+TGG + chr2_4:49705835-49705854 Msa0332630:intron 25.0%
!!! AATTTTAACCATGTAACTGA+CGG - chr2_4:49705945-49705964 None:intergenic 25.0%
!! TTTTGTCATGATTATAAGGT+TGG + chr2_4:49706183-49706202 Msa0332630:intron 25.0%
! TCAGTATCTCACTTTAAATA+TGG + chr2_4:49706216-49706235 Msa0332630:intron 25.0%
! CAGTATCTCACTTTAAATAT+GGG + chr2_4:49706217-49706236 Msa0332630:intron 25.0%
!!! AACATGGACTCATTTTTTAA+TGG + chr2_4:49706491-49706510 Msa0332630:intron 25.0%
! ATCATTAACCCTTCAAAATT+TGG + chr2_4:49706557-49706576 Msa0332630:intron 25.0%
! TCATTAACCCTTCAAAATTT+GGG + chr2_4:49706558-49706577 Msa0332630:intron 25.0%
!! GTTAAAACCCAAATTTTGAA+GGG - chr2_4:49706568-49706587 None:intergenic 25.0%
!! AGTTAAAACCCAAATTTTGA+AGG - chr2_4:49706569-49706588 None:intergenic 25.0%
!!! CATGTTTTTTTACAAAGGAA+TGG - chr2_4:49706611-49706630 None:intergenic 25.0%
!!! CTTTGCATGTTTTTTTACAA+AGG - chr2_4:49706616-49706635 None:intergenic 25.0%
! AAAAAAACATGCAAAGAGAA+AGG + chr2_4:49706620-49706639 Msa0332630:intron 25.0%
! AAAGGAATAATCAATCATGT+TGG + chr2_4:49706638-49706657 Msa0332630:intron 25.0%
!! ACTAATTTGTAATGTGAAAG+TGG - chr2_4:49706731-49706750 None:intergenic 25.0%
! ATAATCACTTTGTCAAATCA+TGG + chr2_4:49706821-49706840 Msa0332630:intron 25.0%
! TCATGGTAAAGTATATAGAA+TGG + chr2_4:49706838-49706857 Msa0332630:intron 25.0%
! AAATAATGCACAACTTTGAA+TGG - chr2_4:49706901-49706920 None:intergenic 25.0%
!! ATGTTTTGCTAACCAAATTT+CGG + chr2_4:49707151-49707170 Msa0332630:intron 25.0%
!!! AAAAACGTTTTGAATCAATC+CGG - chr2_4:49707198-49707217 None:intergenic 25.0%
!! ATTCTTCTTATTCTCTGAAA+CGG + chr2_4:49707249-49707268 Msa0332630:intron 25.0%
!!! TTATTGATAGTGGCTTTATT+GGG - chr2_4:49707317-49707336 None:intergenic 25.0%
!!! ATTATTGATAGTGGCTTTAT+TGG - chr2_4:49707318-49707337 None:intergenic 25.0%
! TAAAGCCACTATCAATAATT+AGG + chr2_4:49707319-49707338 Msa0332630:intron 25.0%
! AAAGCCACTATCAATAATTA+GGG + chr2_4:49707320-49707339 Msa0332630:intron 25.0%
! ATTTCCCTAATTATTGATAG+TGG - chr2_4:49707327-49707346 None:intergenic 25.0%
! TAAATAATTAACGTGAGAGA+GGG - chr2_4:49707415-49707434 None:intergenic 25.0%
! ATAAATAATTAACGTGAGAG+AGG - chr2_4:49707416-49707435 None:intergenic 25.0%
!!! AGTGTTTTTTTTTTCTGTTC+TGG + chr2_4:49707554-49707573 Msa0332630:intron 25.0%
!!! TATTCCTTATTTTATACCCA+AGG - chr2_4:49707829-49707848 None:intergenic 25.0%
! AGCAAAGGAATAAAAATTGA+AGG - chr2_4:49708001-49708020 None:intergenic 25.0%
!!! ATAGTGCTCTTTAATTTTTG+TGG - chr2_4:49708194-49708213 None:intergenic 25.0%
!!! TCATTCTATACTTTTTCAGA+TGG + chr2_4:49708508-49708527 Msa0332630:intron 25.0%
! TATATCTGATACAAATCCAA+AGG + chr2_4:49708625-49708644 Msa0332630:CDS 25.0%
! GTTTCTTAAAGAGAAATTAG+TGG + chr2_4:49709045-49709064 Msa0332630:CDS 25.0%
! TCATTTGGAAGATTGAAATT+AGG - chr2_4:49709376-49709395 None:intergenic 25.0%
! TAATTTCAATCTTCCAAATG+AGG + chr2_4:49709375-49709394 Msa0332630:CDS 25.0%
!!! TGTTGATTTTTTCTATCATC+AGG - chr2_4:49709406-49709425 None:intergenic 25.0%
!! AAAAATGATGACTCCATTTT+TGG - chr2_4:49709550-49709569 None:intergenic 25.0%
!!! AAAATGGAGTCATCATTTTT+TGG + chr2_4:49709550-49709569 Msa0332630:CDS 25.0%
!!! GATGCAAAAAAATCACTTTT+TGG - chr2_4:49709616-49709635 None:intergenic 25.0%
!! ATTTTTGTCCTTTTGTGTTT+TGG + chr2_4:49710199-49710218 Msa0332630:three_prime_UTR 25.0%
! TAAAATAGCCAAAACACAAA+AGG - chr2_4:49710210-49710229 None:intergenic 25.0%
! AAAAAAAAGAGAAAAGCTAG+TGG + chr2_4:49710231-49710250 Msa0332630:three_prime_UTR 25.0%
! AAAAAAAGAGAAAAGCTAGT+GGG + chr2_4:49710232-49710251 Msa0332630:three_prime_UTR 25.0%
!! AATATCAATACAATTTTGGG+GGG - chr2_4:49710344-49710363 None:intergenic 25.0%
!! CCCAAAATTGTATTGATATT+AGG + chr2_4:49710344-49710363 Msa0332630:three_prime_UTR 25.0%
!! GCCTAATATCAATACAATTT+TGG - chr2_4:49710348-49710367 None:intergenic 25.0%
!! AAATTGTATTGATATTAGGC+CGG + chr2_4:49710348-49710367 Msa0332630:three_prime_UTR 25.0%
! ATATTATATCATGCAATGTC+TGG - chr2_4:49710407-49710426 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr2_4:49710523-49710542 None:intergenic 25.0%
AGAAAGAGAGAATAAAAGCA+GGG - chr2_4:49704015-49704034 None:intergenic 30.0%
AGTAGTAACATAGATAAGTG+GGG - chr2_4:49704144-49704163 None:intergenic 30.0%
GAGTAGTAACATAGATAAGT+GGG - chr2_4:49704145-49704164 None:intergenic 30.0%
AGAGTAGTAACATAGATAAG+TGG - chr2_4:49704146-49704165 None:intergenic 30.0%
!! TTTTGATGAAACTGATTCAG+TGG + chr2_4:49704345-49704364 Msa0332630:intron 30.0%
!!! TTTGAGGTGAGTTTTAGTTA+TGG + chr2_4:49704371-49704390 Msa0332630:intron 30.0%
!!! TTGAGGTGAGTTTTAGTTAT+GGG + chr2_4:49704372-49704391 Msa0332630:intron 30.0%
!!! CATTGTTTTTTTCCTCTTTC+GGG + chr2_4:49704589-49704608 Msa0332630:intron 30.0%
!!! TTTTGGCTTTTAATTGTTGC+AGG + chr2_4:49704760-49704779 Msa0332630:intron 30.0%
AAATGATGAGGAGAAATTGA+AGG - chr2_4:49704890-49704909 None:intergenic 30.0%
ATACCTTGAGAAAAATGATG+AGG - chr2_4:49704902-49704921 None:intergenic 30.0%
! TTGTAATCTGTGAAGGATTT+TGG + chr2_4:49705175-49705194 Msa0332630:intron 30.0%
!! GGATTTTGGTATTTGAAGTA+TGG + chr2_4:49705189-49705208 Msa0332630:intron 30.0%
TGTTGAAATGACATAAACCT+TGG + chr2_4:49705313-49705332 Msa0332630:intron 30.0%
GTTGAAATGACATAAACCTT+GGG + chr2_4:49705314-49705333 Msa0332630:intron 30.0%
AATCATATAACATCTTCCCA+AGG - chr2_4:49705333-49705352 None:intergenic 30.0%
ACATGTGAGCATAACTAAAT+TGG + chr2_4:49705584-49705603 Msa0332630:intron 30.0%
!!! TCAAGTACAACGTTGATTTT+TGG + chr2_4:49705642-49705661 Msa0332630:intron 30.0%
!!! CAAGTACAACGTTGATTTTT+GGG + chr2_4:49705643-49705662 Msa0332630:intron 30.0%
! TTTGGGTTAAAACAGTATCA+AGG + chr2_4:49705660-49705679 Msa0332630:intron 30.0%
TTGGGTTAAAACAGTATCAA+GGG + chr2_4:49705661-49705680 Msa0332630:intron 30.0%
TAGTTAAGGCATAATGGTTT+GGG - chr2_4:49705753-49705772 None:intergenic 30.0%
ATAGTTAAGGCATAATGGTT+TGG - chr2_4:49705754-49705773 None:intergenic 30.0%
CATCAATAGTTAAGGCATAA+TGG - chr2_4:49705759-49705778 None:intergenic 30.0%
CTAGTATGACATTTATGCAA+TGG + chr2_4:49705823-49705842 Msa0332630:intron 30.0%
! TTTAAAGTGAGATACTGACA+GGG - chr2_4:49706214-49706233 None:intergenic 30.0%
! ATTTAAAGTGAGATACTGAC+AGG - chr2_4:49706215-49706234 None:intergenic 30.0%
CATTTGTCAGTTTATCATTG+AGG + chr2_4:49706376-49706395 Msa0332630:intron 30.0%
CAATAATGTCTAGGAAAACA+TGG + chr2_4:49706475-49706494 Msa0332630:intron 30.0%
AAGGGTTAATGATTACATGT+TGG - chr2_4:49706550-49706569 None:intergenic 30.0%
!!! GGTTTTAACTGTTGTTTAGT+TGG + chr2_4:49706579-49706598 Msa0332630:intron 30.0%
TTGGTTAGCAAAACATAAAC+CGG - chr2_4:49707147-49707166 None:intergenic 30.0%
! TGTTTTGCTAACCAAATTTC+GGG + chr2_4:49707152-49707171 Msa0332630:intron 30.0%
!! AAAACGTTTTGAATCAATCC+GGG - chr2_4:49707197-49707216 None:intergenic 30.0%
! AACGTTTTTCCCGAAATTAA+AGG + chr2_4:49707209-49707228 Msa0332630:intron 30.0%
ATATGTGAATTGCATAGGTA+AGG - chr2_4:49707377-49707396 None:intergenic 30.0%
TACGAATATGTGAATTGCAT+AGG - chr2_4:49707382-49707401 None:intergenic 30.0%
TTGTAATCTGCAGAACTAAT+GGG - chr2_4:49707450-49707469 None:intergenic 30.0%
ATTGTAATCTGCAGAACTAA+TGG - chr2_4:49707451-49707470 None:intergenic 30.0%
TAGTCACATTAAAAGAAGGA+AGG - chr2_4:49707474-49707493 None:intergenic 30.0%
GTCATAGTCACATTAAAAGA+AGG - chr2_4:49707478-49707497 None:intergenic 30.0%
CAAACAATTCATGTTGAAGA+AGG - chr2_4:49707500-49707519 None:intergenic 30.0%
CTTCTTCAACATGAATTGTT+TGG + chr2_4:49707498-49707517 Msa0332630:intron 30.0%
AAGCTTCAAAATCATCTCAA+TGG - chr2_4:49707530-49707549 None:intergenic 30.0%
TCTACCTTGGGTATAAAATA+AGG + chr2_4:49707822-49707841 Msa0332630:intron 30.0%
AGGAATAAAAATTGAAGGAC+AGG - chr2_4:49707996-49708015 None:intergenic 30.0%
TGGAAAAGACTACAATAACT+TGG + chr2_4:49708660-49708679 Msa0332630:CDS 30.0%
! GATTTTTGCTAGCATTTCAA+CGG + chr2_4:49708760-49708779 Msa0332630:CDS 30.0%
!! ATAACAAGTTGATTGAGAAG+AGG + chr2_4:49709080-49709099 Msa0332630:CDS 30.0%
GATAATGTTGTTCACATATC+AGG + chr2_4:49709133-49709152 Msa0332630:CDS 30.0%
ATGAAATGAGATCTGCAAAA+TGG + chr2_4:49709233-49709252 Msa0332630:CDS 30.0%
TGAAATGAGATCTGCAAAAT+GGG + chr2_4:49709234-49709253 Msa0332630:CDS 30.0%
! TTTTGCATCTTTTGCTGAAA+TGG + chr2_4:49709627-49709646 Msa0332630:CDS 30.0%
!! TTGTTTAGCCTTTTCTTTTG+AGG + chr2_4:49709672-49709691 Msa0332630:CDS 30.0%
! AAATCTTTCAAGTGGGAAAA+GGG + chr2_4:49709704-49709723 Msa0332630:CDS 30.0%
! TAGATTTTCTGATGTGTACA+TGG + chr2_4:49709729-49709748 Msa0332630:CDS 30.0%
ACAACATAGAATCCATTTCA+AGG + chr2_4:49710057-49710076 Msa0332630:three_prime_UTR 30.0%
!!! GAACTTTTTTCACCTTGAAA+TGG - chr2_4:49710072-49710091 None:intergenic 30.0%
CAAATGTAAAAGGAGATTTG+TGG + chr2_4:49710105-49710124 Msa0332630:three_prime_UTR 30.0%
! AACTTTTGGTAGGATTGATA+GGG + chr2_4:49710175-49710194 Msa0332630:three_prime_UTR 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG - chr2_4:49710544-49710563 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG - chr2_4:49710545-49710564 None:intergenic 30.0%
GAAAGAGAGAATAAAAGCAG+GGG - chr2_4:49704014-49704033 None:intergenic 35.0%
GAGAAAGAGAGAATAAAAGC+AGG - chr2_4:49704016-49704035 None:intergenic 35.0%
TCATTTGTGTATCCACCAAA+GGG + chr2_4:49704105-49704124 Msa0332630:five_prime_UTR 35.0%
!!! TTTTTGGTTTTACCCTTTGG+TGG - chr2_4:49704120-49704139 None:intergenic 35.0%
GTAGTAACATAGATAAGTGG+GGG - chr2_4:49704143-49704162 None:intergenic 35.0%
!! TGTTCTGAGGTTTAGAAAAG+TGG - chr2_4:49704195-49704214 None:intergenic 35.0%
ACTTCTACTCATAGTCATTG+AGG + chr2_4:49704247-49704266 Msa0332630:five_prime_UTR 35.0%
!!! GAGTTTTAGTTATGGGTTCA+AGG + chr2_4:49704379-49704398 Msa0332630:intron 35.0%
!!! GCGTTGTTGTTTTTCATGTT+TGG + chr2_4:49704613-49704632 Msa0332630:intron 35.0%
!!! GGTGATGATGGTTTTTTTCT+TGG + chr2_4:49704733-49704752 Msa0332630:intron 35.0%
ATTGAAGGTGAAGTTGAATG+TGG - chr2_4:49704875-49704894 None:intergenic 35.0%
!! TCTCCTCATCATTTTTCTCA+AGG + chr2_4:49704896-49704915 Msa0332630:five_prime_UTR 35.0%
!! CATTTTAGGTAGTATCTGTC+TGG + chr2_4:49705073-49705092 Msa0332630:intron 35.0%
CATTATGTCAGAAGTTCACA+TGG - chr2_4:49705291-49705310 None:intergenic 35.0%
CATGTGAACTTCTGACATAA+TGG + chr2_4:49705289-49705308 Msa0332630:intron 35.0%
! GCACTAAAAAGGCATAACAA+GGG - chr2_4:49705442-49705461 None:intergenic 35.0%
! AGCACTAAAAAGGCATAACA+AGG - chr2_4:49705443-49705462 None:intergenic 35.0%
ACGTTGCATTATATATGCAG+AGG + chr2_4:49705612-49705631 Msa0332630:intron 35.0%
! TTGTTGCTTCAACTTTCAAG+TGG + chr2_4:49705905-49705924 Msa0332630:intron 35.0%
! TTTTTACACCGTCAGTTACA+TGG + chr2_4:49705934-49705953 Msa0332630:intron 35.0%
TGATAAGAACGACCGAAATA+TGG - chr2_4:49705991-49706010 None:intergenic 35.0%
GTTCCTCAAACAAACACAAA+GGG - chr2_4:49706156-49706175 None:intergenic 35.0%
TGTTCCTCAAACAAACACAA+AGG - chr2_4:49706157-49706176 None:intergenic 35.0%
AATCCTAAGGATTATGAGTC+AGG + chr2_4:49706312-49706331 Msa0332630:intron 35.0%
TTTCCTGACTCATAATCCTT+AGG - chr2_4:49706318-49706337 None:intergenic 35.0%
!! TTATATTTCAAGGAGCGTTG+AGG - chr2_4:49706785-49706804 None:intergenic 35.0%
CACGTACTAGAAAGAAAACA+AGG - chr2_4:49706867-49706886 None:intergenic 35.0%
!! CTTGTTTTCTTTCTAGTACG+TGG + chr2_4:49706865-49706884 Msa0332630:intron 35.0%
!! AGATTTGTTACCCAGAAATC+CGG + chr2_4:49707100-49707119 Msa0332630:intron 35.0%
TGGTTAGCAAAACATAAACC+GGG - chr2_4:49707146-49707165 None:intergenic 35.0%
TCCAATACACCCATAAATCA+TGG + chr2_4:49707349-49707368 Msa0332630:intron 35.0%
TCCATGATTTATGGGTGTAT+TGG - chr2_4:49707353-49707372 None:intergenic 35.0%
GGTAAGGTTCCATGATTTAT+GGG - chr2_4:49707361-49707380 None:intergenic 35.0%
AGGTAAGGTTCCATGATTTA+TGG - chr2_4:49707362-49707381 None:intergenic 35.0%
TGCTCTTGCTAATGAATTTG+AGG + chr2_4:49707628-49707647 Msa0332630:intron 35.0%
! AAAAAGCATGCAAGAAGCAA+AGG - chr2_4:49708016-49708035 None:intergenic 35.0%
TTGCTTTAACACATAGATCG+AGG - chr2_4:49708326-49708345 None:intergenic 35.0%
TTCCTAGCTAATTTCTTGCT+TGG - chr2_4:49708560-49708579 None:intergenic 35.0%
!! TGCTCTAAGATGAAGAACTT+TGG - chr2_4:49708588-49708607 None:intergenic 35.0%
TCCAAAGGATGAAACAAACA+TGG + chr2_4:49708640-49708659 Msa0332630:CDS 35.0%
TCCATGTTTGTTTCATCCTT+TGG - chr2_4:49708644-49708663 None:intergenic 35.0%
CGATGCTATTGAACATAATG+TGG + chr2_4:49709273-49709292 Msa0332630:CDS 35.0%
! GAGACTTGTTCATCCAAAAA+TGG + chr2_4:49709534-49709553 Msa0332630:CDS 35.0%
! ATTCACAGAAACCTTTTGAG+TGG + chr2_4:49709580-49709599 Msa0332630:CDS 35.0%
AGCTTGAACCTCAAAAGAAA+AGG - chr2_4:49709683-49709702 None:intergenic 35.0%
TCAAGCTGAAATCTTTCAAG+TGG + chr2_4:49709696-49709715 Msa0332630:CDS 35.0%
! CAAGCTGAAATCTTTCAAGT+GGG + chr2_4:49709697-49709716 Msa0332630:CDS 35.0%
! GAAATCTTTCAAGTGGGAAA+AGG + chr2_4:49709703-49709722 Msa0332630:CDS 35.0%
ACAACAGTAAAACCAACAAC+TGG - chr2_4:49709817-49709836 None:intergenic 35.0%
!! TTACTGTTGTTCCTGGTTTT+AGG + chr2_4:49709827-49709846 Msa0332630:CDS 35.0%
! GTTTTACCAATCCTAAAACC+AGG - chr2_4:49709841-49709860 None:intergenic 35.0%
AAGAATCACATCAAGGTGAA+AGG + chr2_4:49709892-49709911 Msa0332630:CDS 35.0%
GATTAACTCCTGTGTGAAAT+CGG - chr2_4:49709931-49709950 None:intergenic 35.0%
! GAACTTTTGGTAGGATTGAT+AGG + chr2_4:49710174-49710193 Msa0332630:three_prime_UTR 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr2_4:49710509-49710528 None:intergenic 35.0%
GAAATGACGAAAAAAGACGC+TGG - chr2_4:49703970-49703989 None:intergenic 40.0%
GAAGAGAGAGAGAGAGTAAT+TGG - chr2_4:49703992-49704011 None:intergenic 40.0%
GTCATTTGTGTATCCACCAA+AGG + chr2_4:49704104-49704123 Msa0332630:five_prime_UTR 40.0%
!!! GGGTTTTTGGTTTTACCCTT+TGG - chr2_4:49704123-49704142 None:intergenic 40.0%
! CATAGATAAGTGGGGGTTTT+TGG - chr2_4:49704136-49704155 None:intergenic 40.0%
TCAATGTTTGCTCTGTTCTG+AGG - chr2_4:49704208-49704227 None:intergenic 40.0%
! GAGTAGAAGTGTGTGATGAA+GGG - chr2_4:49704237-49704256 None:intergenic 40.0%
! TGAGTAGAAGTGTGTGATGA+AGG - chr2_4:49704238-49704257 None:intergenic 40.0%
!! ACTGATTCAGTGGCTTTTTG+AGG + chr2_4:49704355-49704374 Msa0332630:intron 40.0%
TGTTGTTCTAACACCAAACG+CGG - chr2_4:49704787-49704806 None:intergenic 40.0%
!! CTTTTTGGTCTGTTACCGTT+TGG + chr2_4:49704931-49704950 Msa0332630:intron 40.0%
! GTATCTGTCTGGAAAAGTGT+TGG + chr2_4:49705084-49705103 Msa0332630:intron 40.0%
!! GTTGTAACGGATCTATCACA+AGG - chr2_4:49705479-49705498 None:intergenic 40.0%
! AGTATCAAGGGTTCTAGTCA+CGG + chr2_4:49705673-49705692 Msa0332630:intron 40.0%
CAAACAAACACAAAGGGCAA+GGG - chr2_4:49706150-49706169 None:intergenic 40.0%
TCAAACAAACACAAAGGGCA+AGG - chr2_4:49706151-49706170 None:intergenic 40.0%
TTGCCCTTTGTGTTTGTTTG+AGG + chr2_4:49706150-49706169 Msa0332630:intron 40.0%
GTCTAGATCTTCAAAGATGC+TGG + chr2_4:49706272-49706291 Msa0332630:intron 40.0%
ATGCTGGATATGCATATCTC+AGG + chr2_4:49706288-49706307 Msa0332630:intron 40.0%
TGCTGGATATGCATATCTCA+GGG + chr2_4:49706289-49706308 Msa0332630:intron 40.0%
!! GAATCGGAAATTTGTTGTCG+CGG + chr2_4:49707021-49707040 Msa0332630:intron 40.0%
GTCGTTGAAAAACGCAGAAT+CGG + chr2_4:49707052-49707071 Msa0332630:intron 40.0%
!! GATTTGTTACCCAGAAATCC+GGG + chr2_4:49707101-49707120 Msa0332630:intron 40.0%
!! GCTAACCAAATTTCGGGTTT+CGG + chr2_4:49707158-49707177 Msa0332630:intron 40.0%
!! CTAACCAAATTTCGGGTTTC+GGG + chr2_4:49707159-49707178 Msa0332630:intron 40.0%
ACACCAATGAGATCGTGAAT+CGG - chr2_4:49707772-49707791 None:intergenic 40.0%
ACAAACTCGAGATCCTAAGT+AGG - chr2_4:49707803-49707822 None:intergenic 40.0%
ATCTCGAGTTTGTCTACCTT+GGG + chr2_4:49707810-49707829 Msa0332630:intron 40.0%
CACCAAGCAAGAAATTAGCT+AGG + chr2_4:49708555-49708574 Msa0332630:CDS 40.0%
GCTAGCATTTCAACGGTTAA+AGG + chr2_4:49708767-49708786 Msa0332630:CDS 40.0%
TCAATTCCATCAGGGTCAAA+AGG - chr2_4:49708824-49708843 None:intergenic 40.0%
CAGAAGCTTCAATTCCATCA+GGG - chr2_4:49708832-49708851 None:intergenic 40.0%
TCAGAAGCTTCAATTCCATC+AGG - chr2_4:49708833-49708852 None:intergenic 40.0%
AGCTGAATCGAAGGAGATAA+AGG + chr2_4:49708949-49708968 Msa0332630:CDS 40.0%
GCTGAATCGAAGGAGATAAA+GGG + chr2_4:49708950-49708969 Msa0332630:CDS 40.0%
AGAAGTTGGAATCACAGGTT+AGG + chr2_4:49709002-49709021 Msa0332630:CDS 40.0%
GAGAAGAGGTTGAATCAAAG+TGG + chr2_4:49709094-49709113 Msa0332630:CDS 40.0%
AGAACAGTAGCAAAATGGCT+AGG - chr2_4:49709166-49709185 None:intergenic 40.0%
GACGAAGAACAGTAGCAAAA+TGG - chr2_4:49709171-49709190 None:intergenic 40.0%
! TTTTGCTGAAATGGCCAAGA+GGG + chr2_4:49709636-49709655 Msa0332630:CDS 40.0%
ATGCAAGAGATAAACCCTCT+TGG - chr2_4:49709653-49709672 None:intergenic 40.0%
TCAGAAGAAGAACCAGTTGT+TGG + chr2_4:49709802-49709821 Msa0332630:CDS 40.0%
!!! GTTGGTTTTACTGTTGTTCC+TGG + chr2_4:49709820-49709839 Msa0332630:CDS 40.0%
!!! GTTGTTCCTGGTTTTAGGAT+TGG + chr2_4:49709832-49709851 Msa0332630:CDS 40.0%
TGATGTGATTCTTCTGCATG+AGG - chr2_4:49709885-49709904 None:intergenic 40.0%
CATGCAGAAGAATCACATCA+AGG + chr2_4:49709885-49709904 Msa0332630:CDS 40.0%
!! ATCATCGATTCGAGATCAGA+CGG + chr2_4:49709954-49709973 Msa0332630:three_prime_UTR 40.0%
TCTTAGCCGTCGATCTAAAT+CGG + chr2_4:49710012-49710031 Msa0332630:three_prime_UTR 40.0%
TACAACCCGATTTAGATCGA+CGG - chr2_4:49710021-49710040 None:intergenic 40.0%
TATGTTGTAACTGTGTCGCA+TGG - chr2_4:49710045-49710064 None:intergenic 40.0%
GTAAAAGGAGATTTGTGGTC+AGG + chr2_4:49710110-49710129 Msa0332630:three_prime_UTR 40.0%
TAATGTGCCCTACAACACAA+GGG + chr2_4:49710133-49710152 Msa0332630:three_prime_UTR 40.0%
AAAGGTTGTTCCCAATGCTA+TGG - chr2_4:49710259-49710278 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr2_4:49710508-49710527 None:intergenic 40.0%
GGATACACAAATGACACAGC+TGG - chr2_4:49704099-49704118 None:intergenic 45.0%
!! GTAACGGATCTATCACAAGG+TGG - chr2_4:49705476-49705495 None:intergenic 45.0%
! GTATCAAGGGTTCTAGTCAC+GGG + chr2_4:49705674-49705693 Msa0332630:intron 45.0%
GCATATCTCAGGGAATCCTA+AGG + chr2_4:49706299-49706318 Msa0332630:intron 45.0%
GGGTAACAAATCTGAATCGC+TGG - chr2_4:49707093-49707112 None:intergenic 45.0%
! CTGCAGAACTAATGGGTAGA+AGG - chr2_4:49707443-49707462 None:intergenic 45.0%
ACCAATGAGATCGTGAATCG+GGG - chr2_4:49707770-49707789 None:intergenic 45.0%
CACCAATGAGATCGTGAATC+GGG - chr2_4:49707771-49707790 None:intergenic 45.0%
! GGTGTTATCCGATCCTACTT+AGG + chr2_4:49707787-49707806 Msa0332630:intron 45.0%
CTCGAGATCCTAAGTAGGAT+CGG - chr2_4:49707798-49707817 None:intergenic 45.0%
GATCTCGAGTTTGTCTACCT+TGG + chr2_4:49707809-49707828 Msa0332630:intron 45.0%
TCGAGGACTTTAGCAGTGAA+GGG - chr2_4:49708309-49708328 None:intergenic 45.0%
ATCGAGGACTTTAGCAGTGA+AGG - chr2_4:49708310-49708329 None:intergenic 45.0%
AGTATCGCTTTCTCTGGTGA+AGG - chr2_4:49708926-49708945 None:intergenic 45.0%
CTGTGATTCCAACTTCTTCG+CGG - chr2_4:49708999-49709018 None:intergenic 45.0%
!! TCATCAGGAAGTGCCTCATT+TGG - chr2_4:49709391-49709410 None:intergenic 45.0%
AATTGCGCAAACGACGATCT+TGG - chr2_4:49709496-49709515 None:intergenic 45.0%
!! CACAGAAACCTTTTGAGTGG+TGG + chr2_4:49709583-49709602 Msa0332630:CDS 45.0%
GAAACTCTCCACCACTCAAA+AGG - chr2_4:49709594-49709613 None:intergenic 45.0%
! CTTTTGCTGAAATGGCCAAG+AGG + chr2_4:49709635-49709654 Msa0332630:CDS 45.0%
CTTAGCCGTCGATCTAAATC+GGG + chr2_4:49710013-49710032 Msa0332630:three_prime_UTR 45.0%
GTAATGTGCCCTACAACACA+AGG + chr2_4:49710132-49710151 Msa0332630:three_prime_UTR 45.0%
TGTCCTTCCCTTGTGTTGTA+GGG - chr2_4:49710143-49710162 None:intergenic 45.0%
ATGTCCTTCCCTTGTGTTGT+AGG - chr2_4:49710144-49710163 None:intergenic 45.0%
TACAACACAAGGGAAGGACA+TGG + chr2_4:49710143-49710162 Msa0332630:three_prime_UTR 45.0%
!! CATGGCATGGACTGAACTTT+TGG + chr2_4:49710161-49710180 Msa0332630:three_prime_UTR 45.0%
!! GCATGGACTGAACTTTTGGT+AGG + chr2_4:49710165-49710184 Msa0332630:three_prime_UTR 45.0%
ATTGATATTAGGCCGGTGAC+AGG + chr2_4:49710355-49710374 Msa0332630:three_prime_UTR 45.0%
TTGATATTAGGCCGGTGACA+GGG + chr2_4:49710356-49710375 Msa0332630:three_prime_UTR 45.0%
TAGTATTACTCCCTTCGTCC+CGG + chr2_4:49710487-49710506 Msa0332630:three_prime_UTR 45.0%
GACACAGCTGGAAGTGAGAA+AGG - chr2_4:49704087-49704106 None:intergenic 50.0%
AACAACAACGCACCCGAAAG+AGG - chr2_4:49704604-49704623 None:intergenic 50.0%
AATTGTTGCAGGACCGCGTT+TGG + chr2_4:49704771-49704790 Msa0332630:intron 50.0%
TTCTAGTCACGGGAAACACG+TGG + chr2_4:49705684-49705703 Msa0332630:intron 50.0%
ACAAACACAAAGGGCAAGGG+CGG - chr2_4:49706147-49706166 None:intergenic 50.0%
!! TCAAGGAGCGTTGAGGCAAT+AGG - chr2_4:49706778-49706797 None:intergenic 50.0%
AAACTCGCGATCCAACTCGT+AGG + chr2_4:49706947-49706966 Msa0332630:intron 50.0%
TTCCGATTCCGACGACTTTC+CGG - chr2_4:49707010-49707029 None:intergenic 50.0%
!! GGAAATTTGTTGTCGCGGCT+TGG + chr2_4:49707026-49707045 Msa0332630:intron 50.0%
!! CCAAATTTCGGGTTTCGGGT+CGG + chr2_4:49707163-49707182 Msa0332630:intron 50.0%
!! CAAATTTCGGGTTTCGGGTC+GGG + chr2_4:49707164-49707183 Msa0332630:intron 50.0%
TGAATCGGGGGATCGTAACA+CGG - chr2_4:49707757-49707776 None:intergenic 50.0%
CCAATGAGATCGTGAATCGG+GGG - chr2_4:49707769-49707788 None:intergenic 50.0%
!! TTGCTTGGTGTCACTGCTGA+AGG - chr2_4:49708545-49708564 None:intergenic 50.0%
! CAGACACCTTTTGACCCTGA+TGG + chr2_4:49708815-49708834 Msa0332630:CDS 50.0%
GATACTCGCAGCTGAATCGA+AGG + chr2_4:49708940-49708959 Msa0332630:CDS 50.0%
CTTCTTCGCGGTAATCTCGT+AGG - chr2_4:49708987-49709006 None:intergenic 50.0%
CGAGATTACCGCGAAGAAGT+TGG + chr2_4:49708988-49709007 Msa0332630:CDS 50.0%
CGCGAAGAAGTTGGAATCAC+AGG + chr2_4:49708997-49709016 Msa0332630:CDS 50.0%
TGCTACTGTTCTTCGTCACG+CGG + chr2_4:49709174-49709193 Msa0332630:CDS 50.0%
AGCTAGTGGGACCATAGCAT+TGG + chr2_4:49710245-49710264 Msa0332630:three_prime_UTR 50.0%
GCTAGTGGGACCATAGCATT+GGG + chr2_4:49710246-49710265 Msa0332630:three_prime_UTR 50.0%
TGATATTAGGCCGGTGACAG+GGG + chr2_4:49710357-49710376 Msa0332630:three_prime_UTR 50.0%
GTCAGTTATTCCGGGACGAA+GGG - chr2_4:49710500-49710519 None:intergenic 50.0%
ACTCGGACGATCCTACGAGT+TGG - chr2_4:49706961-49706980 None:intergenic 55.0%
GGGAGGTGAGATCGCAAACT+CGG - chr2_4:49706978-49706997 None:intergenic 55.0%
ATTCCGACGACTTTCCGGCA+CGG - chr2_4:49707005-49707024 None:intergenic 55.0%
TGCCGGAAAGTCGTCGGAAT+CGG + chr2_4:49707005-49707024 Msa0332630:intron 55.0%
TACCCAGAAATCCGGGTTCG+CGG + chr2_4:49707108-49707127 Msa0332630:intron 55.0%
CCGACCCGAAACCCGAAATT+TGG - chr2_4:49707166-49707185 None:intergenic 55.0%
CCCCCGATTCACGATCTCAT+TGG + chr2_4:49707766-49707785 Msa0332630:intron 55.0%
! GCTGCGAGTATCGCTTTCTC+TGG - chr2_4:49708932-49708951 None:intergenic 55.0%
CGTCGTTTGCGCAATTCTGC+AGG + chr2_4:49709500-49709519 Msa0332630:CDS 55.0%
AAGGTGAAAGGATCGCGTGC+TGG + chr2_4:49709904-49709923 Msa0332630:CDS 55.0%
! GTGCTGGTCCGATTTCACAC+AGG + chr2_4:49709920-49709939 Msa0332630:CDS 55.0%
GTGCCCTACAACACAAGGGA+AGG + chr2_4:49710137-49710156 Msa0332630:three_prime_UTR 55.0%
CACAAGGGAAGGACATGGCA+TGG + chr2_4:49710148-49710167 Msa0332630:three_prime_UTR 55.0%
GGTCAGTTATTCCGGGACGA+AGG - chr2_4:49710501-49710520 None:intergenic 55.0%
ACGACTTTCCGGCACGGCAA+GGG - chr2_4:49706999-49707018 None:intergenic 60.0%
TTGCCGTGCCGGAAAGTCGT+CGG + chr2_4:49706999-49707018 Msa0332630:intron 60.0%
ACCCAGAAATCCGGGTTCGC+GGG + chr2_4:49707109-49707128 Msa0332630:intron 60.0%
ACCCGCGAACCCGGATTTCT+GGG - chr2_4:49707113-49707132 None:intergenic 60.0%
AGAAATCCGGGTTCGCGGGT+CGG + chr2_4:49707113-49707132 Msa0332630:intron 60.0%
TATTAGGCCGGTGACAGGGG+TGG + chr2_4:49710360-49710379 Msa0332630:three_prime_UTR 60.0%
AGCTAGACCACCCCTGTCAC+CGG - chr2_4:49710370-49710389 None:intergenic 60.0%
CGACTTTCCGGCACGGCAAG+GGG - chr2_4:49706998-49707017 None:intergenic 65.0%
GACGACTTTCCGGCACGGCA+AGG - chr2_4:49707000-49707019 None:intergenic 65.0%
GACCCGCGAACCCGGATTTC+TGG - chr2_4:49707114-49707133 None:intergenic 65.0%
TTCGGGTCGGGTTCGTGACC+CGG + chr2_4:49707176-49707195 Msa0332630:intron 65.0%
CTCACCTCCCCTTGCCGTGC+CGG + chr2_4:49706988-49707007 Msa0332630:intron 70.0%
CTTTCCGGCACGGCAAGGGG+AGG - chr2_4:49706995-49707014 None:intergenic 70.0%
CACGAACCGACCCGCGAACC+CGG - chr2_4:49707122-49707141 None:intergenic 70.0%
!! TCGCGGGTCGGTTCGTGACC+CGG + chr2_4:49707125-49707144 Msa0332630:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 49703937 49710646 49703937 ID=Msa0332630;Name=Msa0332630
chr2_4 mRNA 49703937 49710646 49703937 ID=Msa0332630-mRNA-1;Parent=Msa0332630;Name=Msa0332630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=468|1|1|1|0|0.33|3|698|473
chr2_4 exon 49703937 49704268 49703937 ID=Msa0332630-mRNA-1:exon:14893;Parent=Msa0332630-mRNA-1
chr2_4 exon 49704782 49704917 49704782 ID=Msa0332630-mRNA-1:exon:14894;Parent=Msa0332630-mRNA-1
chr2_4 exon 49708527 49710646 49708527 ID=Msa0332630-mRNA-1:exon:14895;Parent=Msa0332630-mRNA-1
chr2_4 five_prime_UTR 49703937 49704268 49703937 ID=Msa0332630-mRNA-1:five_prime_utr;Parent=Msa0332630-mRNA-1
chr2_4 five_prime_UTR 49704782 49704917 49704782 ID=Msa0332630-mRNA-1:five_prime_utr;Parent=Msa0332630-mRNA-1
chr2_4 CDS 49708527 49709948 49708527 ID=Msa0332630-mRNA-1:cds;Parent=Msa0332630-mRNA-1
chr2_4 three_prime_UTR 49709949 49710646 49709949 ID=Msa0332630-mRNA-1:three_prime_utr;Parent=Msa0332630-mRNA-1
Gene Sequence

>Msa0332630

ATGGAATCAATGAAACCTTCAGCAGTGACACCAAGCAAGAAATTAGCTAGGAATTTTGCCAAAGTTCTTCATCTTAGAGCATTTTTGAAGAATGTTACTATATCTGATACAAATCCAAAGGATGAAACAAACATGGAAAAGACTACAATAACTTGGTCTGAATCATTCAAAAAAGTTGATGAAGATGAAGAGATTGAAGAACAAAGAGTTGCAACAGAAGCACTTCTTTCAAAGATTTTTGCTAGCATTTCAACGGTTAAAGGTGCATATGCTGAACTGCAGCATTTTCAGACACCTTTTGACCCTGATGGAATTGAAGCTTCTGATAAACTGCTAGTTTCTGAGTTGAAGCATTTATCTGAGCTAAAACAATGTTACTTGAAGAAACAATTTGATCCTTCACCAGAGAAAGCGATACTCGCAGCTGAATCGAAGGAGATAAAGGGTGTCATAAAAACCTACGAGATTACCGCGAAGAAGTTGGAATCACAGGTTAGGCTCAAAGATTCTGAGATTATGTTTCTTAAAGAGAAATTAGTGGAAGCTAATAGTCATAACAAGTTGATTGAGAAGAGGTTGAATCAAAGTGGATCATTATCAGTACTTGATAATGTTGTTCACATATCAGGATTAAGTCCTAGCCATTTTGCTACTGTTCTTCGTCACGCGGTTAGATCGATTCGAAACTTTGTGAAGTTGATTGTTGATGAAATGAGATCTGCAAAATGGGATATTGATGCTGCTGTCGATGCTATTGAACATAATGTGGTTTATATGATTGAAGATCACAAGTGTTTCACAATTGAATCTTTTGTTTGCAGAGAAATGTTTGATGCATTTCACTTTCCTAATTTCAATCTTCCAAATGAGGCACTTCCTGATGATAGAAAAAATCAACAAAATTGGTTCTTTGAAAAGTTCAACGAGTTGAAATCAACGAAAGCTAAAGACTTTCTTGCTGAGAAACCAAGATCGTCGTTTGCGCAATTCTGCAGGAACAAGTATTTGAGACTTGTTCATCCAAAAATGGAGTCATCATTTTTTGGCAACATGATTCACAGAAACCTTTTGAGTGGTGGAGAGTTTCCAAAAAGTGATTTTTTTGCATCTTTTGCTGAAATGGCCAAGAGGGTTTATCTCTTGCATTGTTTAGCCTTTTCTTTTGAGGTTCAAGCTGAAATCTTTCAAGTGGGAAAAGGGTGTAGATTTTCTGATGTGTACATGGAAAGTGTGAATGATGAAATGTTTGTGTTTTCAGACAAGACAGTTGTTGAATCAGAAGAAGAACCAGTTGTTGGTTTTACTGTTGTTCCTGGTTTTAGGATTGGTAAAACTGTTTTACAATGTCAAGTTTACCTCATGCAGAAGAATCACATCAAGGTGAAAGGATCGCGTGCTGGTCCGATTTCACACAGGAGTTAA
Protein sequence

>Msa0332630

MESMKPSAVTPSKKLARNFAKVLHLRAFLKNVTISDTNPKDETNMEKTTITWSESFKKVDEDEEIEEQRVATEALLSKIFASISTVKGAYAELQHFQTPFDPDGIEASDKLLVSELKHLSELKQCYLKKQFDPSPEKAILAAESKEIKGVIKTYEITAKKLESQVRLKDSEIMFLKEKLVEANSHNKLIEKRLNQSGSLSVLDNVVHISGLSPSHFATVLRHAVRSIRNFVKLIVDEMRSAKWDIDAAVDAIEHNVVYMIEDHKCFTIESFVCREMFDAFHFPNFNLPNEALPDDRKNQQNWFFEKFNELKSTKAKDFLAEKPRSSFAQFCRNKYLRLVHPKMESSFFGNMIHRNLLSGGEFPKSDFFASFAEMAKRVYLLHCLAFSFEVQAEIFQVGKGCRFSDVYMESVNDEMFVFSDKTVVESEEEPVVGFTVVPGFRIGKTVLQCQVYLMQKNHIKVKGSRAGPISHRS*