Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214850 | AES66638.1 | 95.186 | 457 | 22 | 0 | 1 | 457 | 1 | 457 | 0.0 | 910 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214850 | sp|Q147F9|AATPC_ARATH | 52.758 | 417 | 196 | 1 | 25 | 440 | 30 | 446 | 2.58e-157 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214850 | G7IH73 | 95.186 | 457 | 22 | 0 | 1 | 457 | 1 | 457 | 0.0 | 910 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0214850 | Msa0294240 | 0.880076 | 7.393462e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214850 | MtrunA17_Chr2g0315911 | 95.186 | 457 | 22 | 0 | 1 | 457 | 1 | 457 | 0.0 | 910 |
| Msa0214850 | MtrunA17_Chr2g0315971 | 83.556 | 450 | 71 | 3 | 7 | 456 | 1 | 447 | 0.0 | 784 |
| Msa0214850 | MtrunA17_Chr2g0315971 | 85.959 | 292 | 40 | 1 | 171 | 461 | 438 | 729 | 3.53e-171 | 498 |
| Msa0214850 | MtrunA17_Chr2g0315991 | 79.583 | 480 | 72 | 4 | 1 | 461 | 1 | 473 | 0.0 | 780 |
| Msa0214850 | MtrunA17_Chr2g0315921 | 83.929 | 448 | 63 | 3 | 3 | 443 | 1 | 446 | 0.0 | 770 |
| Msa0214850 | MtrunA17_Chr2g0315981 | 79.393 | 461 | 87 | 3 | 7 | 461 | 1 | 459 | 0.0 | 760 |
| Msa0214850 | MtrunA17_Chr2g0316021 | 74.279 | 451 | 81 | 2 | 7 | 457 | 1 | 416 | 0.0 | 685 |
| Msa0214850 | MtrunA17_Chr2g0316041 | 82.785 | 395 | 66 | 1 | 65 | 457 | 1 | 395 | 0.0 | 668 |
| Msa0214850 | MtrunA17_Chr8g0372701 | 45.572 | 463 | 236 | 5 | 6 | 455 | 15 | 474 | 5.46e-147 | 429 |
| Msa0214850 | MtrunA17_Chr5g0404651 | 45.513 | 468 | 242 | 6 | 1 | 459 | 7 | 470 | 6.36e-146 | 426 |
| Msa0214850 | MtrunA17_Chr5g0404661 | 42.667 | 450 | 232 | 7 | 21 | 447 | 36 | 482 | 1.72e-120 | 360 |
| Msa0214850 | MtrunA17_Chr4g0059811 | 41.443 | 485 | 229 | 11 | 16 | 455 | 15 | 489 | 1.79e-115 | 349 |
| Msa0214850 | MtrunA17_Chr1g0155131 | 42.731 | 454 | 229 | 8 | 16 | 445 | 12 | 458 | 6.66e-113 | 340 |
| Msa0214850 | MtrunA17_Chr2g0292561 | 40.570 | 456 | 245 | 5 | 16 | 451 | 15 | 464 | 1.73e-112 | 339 |
| Msa0214850 | MtrunA17_Chr7g0215951 | 41.394 | 459 | 222 | 11 | 16 | 435 | 10 | 460 | 5.74e-107 | 326 |
| Msa0214850 | MtrunA17_Chr6g0452451 | 38.745 | 462 | 233 | 9 | 16 | 434 | 14 | 468 | 1.11e-104 | 321 |
| Msa0214850 | MtrunA17_Chr6g0452371 | 40.260 | 462 | 220 | 11 | 16 | 435 | 14 | 461 | 6.61e-103 | 317 |
| Msa0214850 | MtrunA17_Chr6g0452401 | 39.606 | 457 | 213 | 11 | 30 | 435 | 4 | 448 | 3.26e-102 | 313 |
| Msa0214850 | MtrunA17_Chr4g0072491 | 37.137 | 482 | 251 | 10 | 16 | 460 | 10 | 476 | 2.75e-101 | 312 |
| Msa0214850 | MtrunA17_Chr6g0466811 | 39.648 | 454 | 237 | 12 | 5 | 435 | 12 | 451 | 4.01e-101 | 311 |
| Msa0214850 | MtrunA17_Chr6g0452391 | 40.132 | 456 | 229 | 11 | 16 | 435 | 12 | 459 | 5.12e-101 | 311 |
| Msa0214850 | MtrunA17_Chr1g0155121 | 37.660 | 470 | 242 | 9 | 7 | 436 | 1 | 459 | 6.34e-99 | 306 |
| Msa0214850 | MtrunA17_Chr2g0308991 | 36.042 | 480 | 255 | 9 | 14 | 457 | 3 | 466 | 1.03e-98 | 306 |
| Msa0214850 | MtrunA17_Chr6g0452411 | 43.351 | 376 | 159 | 8 | 104 | 435 | 1 | 366 | 5.96e-96 | 295 |
| Msa0214850 | MtrunA17_Chr3g0134831 | 49.310 | 290 | 128 | 4 | 162 | 435 | 1 | 287 | 7.70e-92 | 280 |
| Msa0214850 | MtrunA17_Chr6g0452361 | 52.381 | 231 | 104 | 3 | 211 | 435 | 1 | 231 | 1.56e-77 | 243 |
| Msa0214850 | MtrunA17_Chr3g0127381 | 33.947 | 380 | 212 | 10 | 68 | 437 | 66 | 416 | 2.31e-68 | 226 |
| Msa0214850 | MtrunA17_Chr6g0452481 | 46.429 | 252 | 126 | 6 | 191 | 435 | 5 | 254 | 1.22e-67 | 219 |
| Msa0214850 | MtrunA17_Chr7g0276031 | 33.053 | 357 | 200 | 8 | 65 | 415 | 61 | 384 | 1.79e-64 | 215 |
| Msa0214850 | MtrunA17_Chr8g0346371 | 32.663 | 398 | 231 | 10 | 49 | 435 | 43 | 414 | 7.30e-63 | 211 |
| Msa0214850 | MtrunA17_Chr5g0404671 | 62.857 | 105 | 37 | 1 | 333 | 435 | 1 | 105 | 2.26e-36 | 132 |
| Msa0214850 | MtrunA17_Chr2g0315961 | 90.909 | 66 | 6 | 0 | 366 | 431 | 1 | 66 | 1.13e-35 | 127 |
| Msa0214850 | MtrunA17_Chr5g0404681 | 45.299 | 117 | 61 | 2 | 149 | 265 | 39 | 152 | 4.98e-32 | 119 |
| Msa0214850 | MtrunA17_Chr5g0404691 | 47.619 | 147 | 70 | 3 | 291 | 435 | 8 | 149 | 1.54e-30 | 115 |
| Msa0214850 | MtrunA17_Chr1g0148871 | 43.089 | 123 | 70 | 0 | 318 | 440 | 14 | 136 | 3.26e-29 | 112 |
| Msa0214850 | MtrunA17_Chr3g0145011 | 30.047 | 213 | 131 | 7 | 190 | 393 | 129 | 332 | 3.91e-15 | 77.0 |
| Msa0214850 | MtrunA17_Chr3g0141901 | 29.577 | 213 | 132 | 7 | 190 | 393 | 126 | 329 | 9.50e-15 | 75.9 |
| Msa0214850 | MtrunA17_Chr3g0108321 | 28.834 | 163 | 103 | 4 | 216 | 370 | 171 | 328 | 1.50e-14 | 75.1 |
| Msa0214850 | MtrunA17_Chr7g0262801 | 30.270 | 185 | 109 | 8 | 210 | 383 | 194 | 369 | 1.73e-13 | 72.4 |
| Msa0214850 | MtrunA17_Chr1g0182711 | 29.730 | 185 | 110 | 8 | 210 | 383 | 195 | 370 | 2.83e-13 | 71.6 |
| Msa0214850 | MtrunA17_Chr1g0192151 | 30.488 | 164 | 99 | 5 | 230 | 384 | 193 | 350 | 3.26e-13 | 71.2 |
| Msa0214850 | MtrunA17_Chr4g0014731 | 30.488 | 164 | 99 | 5 | 230 | 384 | 194 | 351 | 3.92e-13 | 70.9 |
| Msa0214850 | MtrunA17_Chr7g0255721 | 32.026 | 153 | 88 | 6 | 228 | 372 | 408 | 552 | 7.19e-13 | 71.2 |
| Msa0214850 | MtrunA17_Chr4g0050561 | 29.609 | 179 | 105 | 7 | 210 | 376 | 163 | 332 | 1.41e-12 | 69.3 |
| Msa0214850 | MtrunA17_Chr7g0260601 | 29.319 | 191 | 122 | 5 | 206 | 388 | 242 | 427 | 1.99e-12 | 69.3 |
| Msa0214850 | MtrunA17_Chr5g0429571 | 31.214 | 173 | 106 | 5 | 204 | 368 | 313 | 480 | 5.67e-12 | 68.2 |
| Msa0214850 | MtrunA17_Chr7g0217421 | 29.121 | 182 | 113 | 6 | 201 | 373 | 36 | 210 | 6.51e-12 | 67.0 |
| Msa0214850 | MtrunA17_Chr3g0104211 | 30.857 | 175 | 108 | 5 | 204 | 370 | 304 | 473 | 1.63e-11 | 66.6 |
| Msa0214850 | MtrunA17_Chr8g0362771 | 29.221 | 154 | 92 | 5 | 226 | 370 | 258 | 403 | 1.64e-11 | 66.6 |
| Msa0214850 | MtrunA17_Chr8g0388371 | 30.994 | 171 | 97 | 6 | 222 | 376 | 421 | 586 | 2.05e-11 | 66.6 |
| Msa0214850 | MtrunA17_Chr3g0086401 | 26.267 | 217 | 138 | 6 | 211 | 417 | 105 | 309 | 3.71e-11 | 65.5 |
| Msa0214850 | MtrunA17_Chr1g0180791 | 27.976 | 168 | 108 | 5 | 213 | 372 | 487 | 649 | 4.05e-11 | 65.5 |
| Msa0214850 | MtrunA17_Chr7g0264521 | 24.096 | 249 | 144 | 9 | 161 | 373 | 136 | 375 | 4.09e-11 | 65.5 |
| Msa0214850 | MtrunA17_Chr7g0264521 | 27.684 | 177 | 115 | 5 | 205 | 373 | 480 | 651 | 5.55e-11 | 65.1 |
| Msa0214850 | MtrunA17_Chr1g0211521 | 35.789 | 95 | 55 | 1 | 366 | 454 | 5 | 99 | 4.78e-11 | 60.1 |
| Msa0214850 | MtrunA17_Chr2g0327121 | 27.976 | 168 | 108 | 5 | 213 | 372 | 489 | 651 | 5.31e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214850 | AT3G50940.1 | 52.758 | 417 | 196 | 1 | 25 | 440 | 30 | 446 | 2.62e-158 | 456 |
| Msa0214850 | AT3G50930.1 | 48.206 | 446 | 212 | 5 | 23 | 452 | 74 | 516 | 9.20e-148 | 434 |
| Msa0214850 | AT2G18193.1 | 43.946 | 446 | 222 | 5 | 16 | 447 | 20 | 451 | 1.16e-127 | 380 |
| Msa0214850 | AT5G17740.1 | 40.830 | 458 | 258 | 4 | 16 | 461 | 19 | 475 | 2.44e-122 | 367 |
| Msa0214850 | AT2G18190.1 | 42.366 | 465 | 239 | 6 | 4 | 450 | 5 | 458 | 1.02e-121 | 364 |
| Msa0214850 | AT5G17760.1 | 41.387 | 476 | 255 | 7 | 10 | 463 | 9 | 482 | 8.48e-121 | 362 |
| Msa0214850 | AT5G17730.1 | 41.164 | 464 | 246 | 11 | 10 | 453 | 9 | 465 | 4.47e-120 | 359 |
| Msa0214850 | AT3G28600.1 | 41.342 | 462 | 217 | 9 | 16 | 441 | 9 | 452 | 1.34e-113 | 343 |
| Msa0214850 | AT3G28510.1 | 40.044 | 457 | 232 | 8 | 16 | 438 | 13 | 461 | 3.33e-111 | 338 |
| Msa0214850 | AT3G28540.2 | 40.393 | 458 | 216 | 9 | 16 | 432 | 13 | 454 | 2.32e-110 | 336 |
| Msa0214850 | AT3G28540.1 | 40.393 | 458 | 216 | 9 | 16 | 432 | 13 | 454 | 3.40e-110 | 335 |
| Msa0214850 | AT4G05380.1 | 41.438 | 473 | 235 | 11 | 3 | 447 | 1 | 459 | 8.63e-110 | 333 |
| Msa0214850 | AT3G28610.1 | 40.126 | 476 | 224 | 12 | 3 | 441 | 1 | 452 | 2.60e-108 | 329 |
| Msa0214850 | AT4G25835.1 | 40.319 | 439 | 226 | 8 | 16 | 425 | 10 | 441 | 6.70e-108 | 329 |
| Msa0214850 | AT3G28580.1 | 39.872 | 469 | 230 | 12 | 1 | 431 | 1 | 455 | 2.59e-107 | 328 |
| Msa0214850 | AT5G40010.1 | 40.088 | 454 | 228 | 9 | 16 | 431 | 13 | 460 | 5.93e-104 | 319 |
| Msa0214850 | AT5G57480.1 | 35.870 | 460 | 251 | 6 | 16 | 437 | 10 | 463 | 1.22e-101 | 313 |
| Msa0214850 | AT5G40000.1 | 39.375 | 480 | 238 | 10 | 7 | 451 | 4 | 465 | 1.59e-101 | 311 |
| Msa0214850 | AT5G17750.1 | 40.342 | 409 | 205 | 9 | 5 | 403 | 11 | 390 | 1.62e-101 | 309 |
| Msa0214850 | AT3G28570.2 | 38.413 | 479 | 244 | 12 | 2 | 456 | 3 | 454 | 4.08e-100 | 308 |
| Msa0214850 | AT3G28570.1 | 39.224 | 464 | 232 | 11 | 16 | 456 | 11 | 447 | 4.83e-100 | 307 |
| Msa0214850 | AT3G28600.2 | 39.341 | 455 | 197 | 8 | 16 | 441 | 9 | 413 | 1.47e-98 | 303 |
| Msa0214850 | AT1G43910.1 | 37.792 | 471 | 246 | 7 | 4 | 443 | 1 | 455 | 2.00e-98 | 304 |
| Msa0214850 | AT3G28520.1 | 39.066 | 471 | 245 | 8 | 18 | 455 | 1 | 462 | 7.35e-97 | 300 |
| Msa0214850 | AT3G28580.2 | 39.333 | 450 | 237 | 12 | 1 | 431 | 1 | 433 | 2.06e-95 | 296 |
| Msa0214850 | AT4G30250.1 | 36.170 | 470 | 252 | 11 | 7 | 437 | 1 | 461 | 1.17e-94 | 295 |
| Msa0214850 | AT4G30250.2 | 36.170 | 470 | 252 | 11 | 7 | 437 | 3 | 463 | 1.18e-94 | 296 |
| Msa0214850 | AT2G46620.1 | 33.333 | 426 | 230 | 10 | 54 | 455 | 49 | 444 | 9.70e-74 | 240 |
| Msa0214850 | AT5G17760.2 | 39.623 | 318 | 175 | 4 | 10 | 312 | 9 | 324 | 5.32e-72 | 231 |
| Msa0214850 | AT3G29800.1 | 32.446 | 413 | 213 | 12 | 54 | 449 | 40 | 403 | 5.76e-63 | 211 |
| Msa0214850 | AT4G05340.1 | 60.294 | 68 | 27 | 0 | 323 | 390 | 26 | 93 | 3.52e-20 | 85.5 |
| Msa0214850 | AT3G28560.1 | 29.534 | 193 | 106 | 5 | 35 | 214 | 36 | 211 | 5.96e-18 | 84.0 |
| Msa0214850 | AT5G43010.1 | 30.256 | 195 | 119 | 6 | 190 | 376 | 126 | 311 | 4.27e-15 | 77.4 |
| Msa0214850 | AT5G58290.1 | 26.214 | 206 | 137 | 6 | 204 | 401 | 152 | 350 | 4.29e-15 | 77.4 |
| Msa0214850 | AT1G45000.1 | 30.256 | 195 | 119 | 6 | 190 | 376 | 126 | 311 | 6.96e-15 | 76.6 |
| Msa0214850 | AT3G05530.1 | 31.098 | 164 | 98 | 5 | 230 | 384 | 194 | 351 | 1.73e-13 | 72.4 |
| Msa0214850 | AT4G29040.1 | 30.337 | 178 | 105 | 7 | 217 | 383 | 198 | 367 | 3.60e-13 | 71.6 |
| Msa0214850 | AT2G20140.1 | 29.714 | 175 | 110 | 5 | 217 | 383 | 198 | 367 | 7.42e-13 | 70.9 |
| Msa0214850 | AT5G19990.2 | 29.050 | 179 | 106 | 7 | 210 | 376 | 107 | 276 | 1.27e-12 | 69.3 |
| Msa0214850 | AT5G19990.1 | 29.609 | 179 | 105 | 7 | 210 | 376 | 165 | 334 | 2.22e-12 | 68.9 |
| Msa0214850 | AT5G19990.3 | 29.609 | 179 | 105 | 7 | 210 | 376 | 165 | 334 | 2.22e-12 | 68.9 |
| Msa0214850 | AT5G20000.1 | 29.050 | 179 | 106 | 7 | 210 | 376 | 165 | 334 | 2.26e-12 | 68.9 |
| Msa0214850 | AT5G58870.1 | 30.857 | 175 | 108 | 5 | 204 | 370 | 326 | 495 | 7.23e-12 | 68.2 |
| Msa0214850 | AT2G03670.1 | 31.013 | 158 | 85 | 6 | 234 | 376 | 49 | 197 | 1.30e-11 | 67.4 |
| Msa0214850 | AT2G03670.2 | 31.013 | 158 | 85 | 6 | 234 | 376 | 49 | 197 | 1.72e-11 | 66.2 |
| Msa0214850 | AT3G47060.1 | 30.508 | 177 | 110 | 5 | 204 | 372 | 322 | 493 | 3.10e-11 | 66.2 |
| Msa0214850 | AT3G53230.1 | 28.402 | 169 | 108 | 5 | 213 | 373 | 487 | 650 | 9.38e-11 | 64.7 |
Find 71 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGATTGAAGTTCTTCT+TGG | 0.223470 | 2_1:-59485006 | Msa0214850:CDS |
| CTTCTCTCTTAGTCTCTTCC+TGG | 0.235607 | 2_1:+59484875 | None:intergenic |
| TTTCAACAGATGACACTTTC+GGG | 0.253746 | 2_1:-59485234 | Msa0214850:intron |
| ATTGGATGGTTGAACTTAAT+AGG | 0.269533 | 2_1:+59486041 | None:intergenic |
| TTGAAATTCTTCAATGACTA+TGG | 0.286598 | 2_1:+59486463 | None:intergenic |
| AAGGGAAATTAAGAATGATT+TGG | 0.292518 | 2_1:-59485982 | Msa0214850:CDS |
| TTGTATGGTCCTCCTGGTAC+TGG | 0.303664 | 2_1:-59485894 | Msa0214850:CDS |
| GATGAAGAAGTTGTTCATAA+TGG | 0.310288 | 2_1:-59485693 | Msa0214850:CDS |
| CAACTTCTTCATCTTCTTCT+CGG | 0.328790 | 2_1:+59485703 | None:intergenic |
| CAAGAATTCGACATTATGAT+AGG | 0.351643 | 2_1:-59486238 | Msa0214850:CDS |
| TGAATGCAGTAGATGGTCTT+TGG | 0.365588 | 2_1:-59485206 | Msa0214850:CDS |
| TGTTCATAATGGGCACAATA+AGG | 0.386190 | 2_1:-59485682 | Msa0214850:intron |
| AGTTAAAGCAACCAAATCTA+AGG | 0.392234 | 2_1:-59486366 | Msa0214850:CDS |
| ATGAAGAAGTTGTTCATAAT+GGG | 0.392993 | 2_1:-59485692 | Msa0214850:CDS |
| ACCGCGTTTCCAAGCTTTCC+CGG | 0.395418 | 2_1:+59485923 | None:intergenic |
| TGGTGAATTGTGCGTTGAAT+TGG | 0.398672 | 2_1:+59486483 | None:intergenic |
| GTCCCGATTGAACAAAGTTT+AGG | 0.399697 | 2_1:+59486522 | None:intergenic |
| AGTTGCTTTAGTTCCTAGAT+AGG | 0.400041 | 2_1:+59486403 | None:intergenic |
| AGTCCTAAACTTTGTTCAAT+CGG | 0.400740 | 2_1:-59486525 | Msa0214850:CDS |
| GGAATTTGATAAGGTCTTGC+AGG | 0.402644 | 2_1:+59484917 | None:intergenic |
| ACTTGGATCTCACTAATGTT+GGG | 0.408726 | 2_1:-59485818 | Msa0214850:CDS |
| AACTCTTCTGCAATTTCAGC+TGG | 0.411104 | 2_1:+59484967 | None:intergenic |
| GAGGCAGCAGAAGCCTATCT+AGG | 0.421960 | 2_1:-59486416 | Msa0214850:CDS |
| TGGCTTGGAGGAATTTGATA+AGG | 0.429033 | 2_1:+59484908 | None:intergenic |
| ATTCCTCCAAGCCAAGAAAA+TGG | 0.431539 | 2_1:-59484899 | Msa0214850:CDS |
| GAGGCCACTGCAGATAAAAC+TGG | 0.436495 | 2_1:+59486593 | None:intergenic |
| CCGTTCTATACTTGTGATAG+AGG | 0.447088 | 2_1:-59485754 | Msa0214850:CDS |
| GTCCTAAACTTTGTTCAATC+GGG | 0.449195 | 2_1:-59486524 | Msa0214850:CDS |
| GACTTGGATCTCACTAATGT+TGG | 0.453484 | 2_1:-59485819 | Msa0214850:CDS |
| TTGAAGGTGTTAGTGTAAAG+TGG | 0.455356 | 2_1:-59486289 | Msa0214850:CDS |
| TACTTGTTGTATGGTCCTCC+TGG | 0.457478 | 2_1:-59485900 | Msa0214850:CDS |
| ACAAATTAAACAAGGATTTG+TGG | 0.458513 | 2_1:-59486108 | Msa0214850:CDS |
| GCAAGAGTGTTGAAACTCAT+TGG | 0.462379 | 2_1:+59486023 | None:intergenic |
| TTAGCTCTCTCCATCACATA+AGG | 0.464927 | 2_1:+59486131 | None:intergenic |
| TCACAACAAATCACAAAGAC+AGG | 0.471357 | 2_1:-59485152 | Msa0214850:CDS |
| AAACGCGGTTACTTGTTGTA+TGG | 0.474020 | 2_1:-59485909 | Msa0214850:CDS |
| ATAGAAGAACCGGGAAAGCT+TGG | 0.478091 | 2_1:-59485932 | Msa0214850:CDS |
| AGCAAAGAAGAACAAGATCT+AGG | 0.484846 | 2_1:-59484847 | Msa0214850:CDS |
| CAATTGATGAAGAGCTTCAA+AGG | 0.486235 | 2_1:-59486001 | Msa0214850:CDS |
| ATAGTCATTGAAGAATTTCA+AGG | 0.496242 | 2_1:-59486461 | Msa0214850:CDS |
| GTCTAGCTTGATTGCAGCCA+TGG | 0.496694 | 2_1:-59485868 | Msa0214850:CDS |
| AAGCTAGACTTCCCAGTACC+AGG | 0.497146 | 2_1:+59485882 | None:intergenic |
| GGACTATTGAATGCAGTAGA+TGG | 0.497808 | 2_1:-59485213 | Msa0214850:CDS |
| CCAAGCCAAGAAAATGGTCC+AGG | 0.508568 | 2_1:-59484893 | Msa0214850:CDS |
| CAACTATGATATCTATGACT+TGG | 0.513130 | 2_1:-59485835 | Msa0214850:CDS |
| ATTTGCTTGTCCATTCTACC+AGG | 0.513687 | 2_1:+59485108 | None:intergenic |
| AGTTCGCATTAGCGCAATTG+AGG | 0.515687 | 2_1:+59486574 | None:intergenic |
| TTCATATTTGCCTTATGTGA+TGG | 0.523892 | 2_1:-59486141 | Msa0214850:CDS |
| TGTATGGTCCTCCTGGTACT+GGG | 0.528478 | 2_1:-59485893 | Msa0214850:CDS |
| AATTGATGAAGAGCTTCAAA+GGG | 0.533769 | 2_1:-59486000 | Msa0214850:CDS |
| TCTGTTAAGACCTGGTAGAA+TGG | 0.545715 | 2_1:-59485118 | Msa0214850:CDS |
| CTACCAGGTCTTAACAGAGC+AGG | 0.546075 | 2_1:+59485123 | None:intergenic |
| TATCACAAGTATAGAACGGT+TGG | 0.555140 | 2_1:+59485758 | None:intergenic |
| AAGAATTCGACATTATGATA+GGG | 0.568700 | 2_1:-59486237 | Msa0214850:CDS |
| ACTCAAATGAATATAATCGT+TGG | 0.570247 | 2_1:-59486073 | Msa0214850:CDS |
| ACATTATGATAGGGACTCCT+CGG | 0.578511 | 2_1:-59486228 | Msa0214850:CDS |
| CTTGGATCTCACTAATGTTG+GGG | 0.595649 | 2_1:-59485817 | Msa0214850:CDS |
| GATCCTGCTCTGTTAAGACC+TGG | 0.601081 | 2_1:-59485126 | Msa0214850:CDS |
| GTTCATGTTCAGTAATGCAA+AGG | 0.603050 | 2_1:+59485034 | None:intergenic |
| TAGTCATTGAAGAATTTCAA+GGG | 0.606257 | 2_1:-59486460 | Msa0214850:CDS |
| GAGTGTTGAAACTCATTGGA+TGG | 0.615289 | 2_1:+59486027 | None:intergenic |
| ACCGGGAAAGCTTGGAAACG+CGG | 0.621197 | 2_1:-59485924 | Msa0214850:CDS |
| TCTTATTTCTGACACAGCCG+AGG | 0.630279 | 2_1:+59486211 | None:intergenic |
| CCTCTATCACAAGTATAGAA+CGG | 0.641804 | 2_1:+59485754 | None:intergenic |
| ACAAAGTTTAGGACTTGACG+AGG | 0.655513 | 2_1:+59486533 | None:intergenic |
| ATAGTTGAGATAGTTAGCCA+TGG | 0.661661 | 2_1:+59485851 | None:intergenic |
| GATGGTCTTTGGTCATGCTG+TGG | 0.668698 | 2_1:-59485195 | Msa0214850:CDS |
| AGAGCTAAACAAATTAAACA+AGG | 0.691321 | 2_1:-59486116 | Msa0214850:CDS |
| AATTGCAGAAGAGTTAACAA+AGG | 0.702150 | 2_1:-59484959 | Msa0214850:CDS |
| TCTTTGGTCATGCTGTGGAG+AGG | 0.703389 | 2_1:-59485190 | Msa0214850:CDS |
| CTAGACTTCCCAGTACCAGG+AGG | 0.750100 | 2_1:+59485885 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTAGCTGAAAAAATT+TGG | - | chr2_1:59485967-59485986 | Msa0214850:CDS | 15.0% |
| !! | AATATTTAGCTGAAAAAATT+TGG | - | chr2_1:59485967-59485986 | Msa0214850:CDS | 15.0% |
| !!! | AAAGAATTTTATAGAAGAAC+CGG | - | chr2_1:59485506-59485525 | Msa0214850:intron | 20.0% |
| !! | TCTTTCAAATAATTACAGTT+TGG | + | chr2_1:59485840-59485859 | None:intergenic | 20.0% |
| !!! | ATTAGTTTAAAATAGTTGAC+AGG | + | chr2_1:59486180-59486199 | None:intergenic | 20.0% |
| !!! | AAAGAATTTTATAGAAGAAC+CGG | - | chr2_1:59485506-59485525 | Msa0214850:intron | 20.0% |
| !! | TCTTTCAAATAATTACAGTT+TGG | + | chr2_1:59485840-59485859 | None:intergenic | 20.0% |
| !!! | ATTAGTTTAAAATAGTTGAC+AGG | + | chr2_1:59486180-59486199 | None:intergenic | 20.0% |
| ! | TTGAAATTCTTCAATGACTA+TGG | + | chr2_1:59484988-59485007 | None:intergenic | 25.0% |
| ! | ATAGTCATTGAAGAATTTCA+AGG | - | chr2_1:59484987-59485006 | Msa0214850:CDS | 25.0% |
| ! | TAGTCATTGAAGAATTTCAA+GGG | - | chr2_1:59484988-59485007 | Msa0214850:CDS | 25.0% |
| !! | CTTTTTATGTTCCTTAGATT+TGG | + | chr2_1:59485096-59485115 | None:intergenic | 25.0% |
| ! | AAGAATTCGACATTATGATA+GGG | - | chr2_1:59485211-59485230 | Msa0214850:CDS | 25.0% |
| ! | AGAGCTAAACAAATTAAACA+AGG | - | chr2_1:59485332-59485351 | Msa0214850:intron | 25.0% |
| ! | ACAAATTAAACAAGGATTTG+TGG | - | chr2_1:59485340-59485359 | Msa0214850:intron | 25.0% |
| ! | ACTCAAATGAATATAATCGT+TGG | - | chr2_1:59485375-59485394 | Msa0214850:intron | 25.0% |
| ! | AAGGGAAATTAAGAATGATT+TGG | - | chr2_1:59485466-59485485 | Msa0214850:intron | 25.0% |
| !! | AAGAATTTTATAGAAGAACC+GGG | - | chr2_1:59485507-59485526 | Msa0214850:intron | 25.0% |
| ! | ATGAAGAAGTTGTTCATAAT+GGG | - | chr2_1:59485756-59485775 | Msa0214850:CDS | 25.0% |
| ! | TAAGTCATGTTGTTAACAAT+AGG | + | chr2_1:59485931-59485950 | None:intergenic | 25.0% |
| !!! | CTTTTCTGCTTTTAAGAAAT+TGG | - | chr2_1:59486381-59486400 | Msa0214850:CDS | 25.0% |
| ! | TTGAAATTCTTCAATGACTA+TGG | + | chr2_1:59484988-59485007 | None:intergenic | 25.0% |
| ! | ATAGTCATTGAAGAATTTCA+AGG | - | chr2_1:59484987-59485006 | Msa0214850:CDS | 25.0% |
| ! | TAGTCATTGAAGAATTTCAA+GGG | - | chr2_1:59484988-59485007 | Msa0214850:CDS | 25.0% |
| !! | CTTTTTATGTTCCTTAGATT+TGG | + | chr2_1:59485096-59485115 | None:intergenic | 25.0% |
| ! | AAGAATTCGACATTATGATA+GGG | - | chr2_1:59485211-59485230 | Msa0214850:CDS | 25.0% |
| ! | AGAGCTAAACAAATTAAACA+AGG | - | chr2_1:59485332-59485351 | Msa0214850:intron | 25.0% |
| ! | ACAAATTAAACAAGGATTTG+TGG | - | chr2_1:59485340-59485359 | Msa0214850:intron | 25.0% |
| ! | ACTCAAATGAATATAATCGT+TGG | - | chr2_1:59485375-59485394 | Msa0214850:intron | 25.0% |
| ! | AAGGGAAATTAAGAATGATT+TGG | - | chr2_1:59485466-59485485 | Msa0214850:intron | 25.0% |
| !! | AAGAATTTTATAGAAGAACC+GGG | - | chr2_1:59485507-59485526 | Msa0214850:intron | 25.0% |
| ! | ATGAAGAAGTTGTTCATAAT+GGG | - | chr2_1:59485756-59485775 | Msa0214850:CDS | 25.0% |
| ! | TAAGTCATGTTGTTAACAAT+AGG | + | chr2_1:59485931-59485950 | None:intergenic | 25.0% |
| !!! | CTTTTCTGCTTTTAAGAAAT+TGG | - | chr2_1:59486381-59486400 | Msa0214850:CDS | 25.0% |
| AGTCCTAAACTTTGTTCAAT+CGG | - | chr2_1:59484923-59484942 | Msa0214850:CDS | 30.0% | |
| CGTTGAATTGGAAAAAAAGA+TGG | + | chr2_1:59484956-59484975 | None:intergenic | 30.0% | |
| AGTTAAAGCAACCAAATCTA+AGG | - | chr2_1:59485082-59485101 | Msa0214850:CDS | 30.0% | |
| CAAGAATTCGACATTATGAT+AGG | - | chr2_1:59485210-59485229 | Msa0214850:CDS | 30.0% | |
| TTCATATTTGCCTTATGTGA+TGG | - | chr2_1:59485307-59485326 | Msa0214850:intron | 30.0% | |
| ATTGGATGGTTGAACTTAAT+AGG | + | chr2_1:59485410-59485429 | None:intergenic | 30.0% | |
| AATTGATGAAGAGCTTCAAA+GGG | - | chr2_1:59485448-59485467 | Msa0214850:intron | 30.0% | |
| CAACTATGATATCTATGACT+TGG | - | chr2_1:59485613-59485632 | Msa0214850:intron | 30.0% | |
| ! | TTCTCGGTTTTGCAATTTTA+CGG | + | chr2_1:59485732-59485751 | None:intergenic | 30.0% |
| GATGAAGAAGTTGTTCATAA+TGG | - | chr2_1:59485755-59485774 | Msa0214850:CDS | 30.0% | |
| !! | CTGAAAAAATTTGGTCTTGT+TGG | - | chr2_1:59485976-59485995 | Msa0214850:CDS | 30.0% |
| TATGATGTCTGTTCATATCA+TGG | - | chr2_1:59486117-59486136 | Msa0214850:CDS | 30.0% | |
| ATGATGTCTGTTCATATCAT+GGG | - | chr2_1:59486118-59486137 | Msa0214850:CDS | 30.0% | |
| ACAGGAACAAAAGAATATGT+TGG | + | chr2_1:59486162-59486181 | None:intergenic | 30.0% | |
| ! | TTTTCAACAGATGACACTTT+CGG | - | chr2_1:59486213-59486232 | Msa0214850:CDS | 30.0% |
| GAAAAGATTGAAGTTCTTCT+TGG | - | chr2_1:59486442-59486461 | Msa0214850:CDS | 30.0% | |
| AATTGCAGAAGAGTTAACAA+AGG | - | chr2_1:59486489-59486508 | Msa0214850:CDS | 30.0% | |
| AGTCCTAAACTTTGTTCAAT+CGG | - | chr2_1:59484923-59484942 | Msa0214850:CDS | 30.0% | |
| CGTTGAATTGGAAAAAAAGA+TGG | + | chr2_1:59484956-59484975 | None:intergenic | 30.0% | |
| AGTTAAAGCAACCAAATCTA+AGG | - | chr2_1:59485082-59485101 | Msa0214850:CDS | 30.0% | |
| CAAGAATTCGACATTATGAT+AGG | - | chr2_1:59485210-59485229 | Msa0214850:CDS | 30.0% | |
| TTCATATTTGCCTTATGTGA+TGG | - | chr2_1:59485307-59485326 | Msa0214850:intron | 30.0% | |
| ATTGGATGGTTGAACTTAAT+AGG | + | chr2_1:59485410-59485429 | None:intergenic | 30.0% | |
| AATTGATGAAGAGCTTCAAA+GGG | - | chr2_1:59485448-59485467 | Msa0214850:intron | 30.0% | |
| CAACTATGATATCTATGACT+TGG | - | chr2_1:59485613-59485632 | Msa0214850:intron | 30.0% | |
| ! | TTCTCGGTTTTGCAATTTTA+CGG | + | chr2_1:59485732-59485751 | None:intergenic | 30.0% |
| GATGAAGAAGTTGTTCATAA+TGG | - | chr2_1:59485755-59485774 | Msa0214850:CDS | 30.0% | |
| !! | CTGAAAAAATTTGGTCTTGT+TGG | - | chr2_1:59485976-59485995 | Msa0214850:CDS | 30.0% |
| TATGATGTCTGTTCATATCA+TGG | - | chr2_1:59486117-59486136 | Msa0214850:CDS | 30.0% | |
| ATGATGTCTGTTCATATCAT+GGG | - | chr2_1:59486118-59486137 | Msa0214850:CDS | 30.0% | |
| ACAGGAACAAAAGAATATGT+TGG | + | chr2_1:59486162-59486181 | None:intergenic | 30.0% | |
| ! | TTTTCAACAGATGACACTTT+CGG | - | chr2_1:59486213-59486232 | Msa0214850:CDS | 30.0% |
| GAAAAGATTGAAGTTCTTCT+TGG | - | chr2_1:59486442-59486461 | Msa0214850:CDS | 30.0% | |
| AATTGCAGAAGAGTTAACAA+AGG | - | chr2_1:59486489-59486508 | Msa0214850:CDS | 30.0% | |
| GTCCTAAACTTTGTTCAATC+GGG | - | chr2_1:59484924-59484943 | Msa0214850:CDS | 35.0% | |
| ! | GACAAGAAACCAAGTTTTTG+AGG | - | chr2_1:59485013-59485032 | Msa0214850:CDS | 35.0% |
| ! | AGTTGCTTTAGTTCCTAGAT+AGG | + | chr2_1:59485048-59485067 | None:intergenic | 35.0% |
| !! | GAAGTGAGTGATGTTTTTGA+AGG | - | chr2_1:59485143-59485162 | Msa0214850:CDS | 35.0% |
| !! | TTGAAGGTGTTAGTGTAAAG+TGG | - | chr2_1:59485159-59485178 | Msa0214850:CDS | 35.0% |
| CAATTGATGAAGAGCTTCAA+AGG | - | chr2_1:59485447-59485466 | Msa0214850:intron | 35.0% | |
| ATAGTTGAGATAGTTAGCCA+TGG | + | chr2_1:59485600-59485619 | None:intergenic | 35.0% | |
| ACTTGGATCTCACTAATGTT+GGG | - | chr2_1:59485630-59485649 | Msa0214850:intron | 35.0% | |
| TATCACAAGTATAGAACGGT+TGG | + | chr2_1:59485693-59485712 | None:intergenic | 35.0% | |
| CCTCTATCACAAGTATAGAA+CGG | + | chr2_1:59485697-59485716 | None:intergenic | 35.0% | |
| CAACTTCTTCATCTTCTTCT+CGG | + | chr2_1:59485748-59485767 | None:intergenic | 35.0% | |
| !! | TGTTCATAATGGGCACAATA+AGG | - | chr2_1:59485766-59485785 | Msa0214850:CDS | 35.0% |
| GAATTTGACGTACATGAATC+TGG | - | chr2_1:59485858-59485877 | Msa0214850:CDS | 35.0% | |
| AATCATCTGCATGATTTAGC+CGG | - | chr2_1:59485894-59485913 | Msa0214850:CDS | 35.0% | |
| ! | ATGATTTAGCCGGTGAATTT+TGG | - | chr2_1:59485904-59485923 | Msa0214850:CDS | 35.0% |
| ACAATAGGACCAAAATTCAC+CGG | + | chr2_1:59485916-59485935 | None:intergenic | 35.0% | |
| CTAAATATTATGTCCTCGTG+CGG | + | chr2_1:59485956-59485975 | None:intergenic | 35.0% | |
| ! | TGGTAAGATTTTGTCGACAA+TGG | - | chr2_1:59485996-59486015 | Msa0214850:CDS | 35.0% |
| ! | AAGATTTTGTCGACAATGGT+TGG | - | chr2_1:59486000-59486019 | Msa0214850:CDS | 35.0% |
| TGATGTCTGTTCATATCATG+GGG | - | chr2_1:59486119-59486138 | Msa0214850:CDS | 35.0% | |
| TTTCAACAGATGACACTTTC+GGG | - | chr2_1:59486214-59486233 | Msa0214850:CDS | 35.0% | |
| TCACAACAAATCACAAAGAC+AGG | - | chr2_1:59486296-59486315 | Msa0214850:CDS | 35.0% | |
| GTTCATGTTCAGTAATGCAA+AGG | + | chr2_1:59486417-59486436 | None:intergenic | 35.0% | |
| AGCAAAGAAGAACAAGATCT+AGG | - | chr2_1:59486601-59486620 | Msa0214850:CDS | 35.0% | |
| GTCCTAAACTTTGTTCAATC+GGG | - | chr2_1:59484924-59484943 | Msa0214850:CDS | 35.0% | |
| ! | GACAAGAAACCAAGTTTTTG+AGG | - | chr2_1:59485013-59485032 | Msa0214850:CDS | 35.0% |
| ! | AGTTGCTTTAGTTCCTAGAT+AGG | + | chr2_1:59485048-59485067 | None:intergenic | 35.0% |
| !! | GAAGTGAGTGATGTTTTTGA+AGG | - | chr2_1:59485143-59485162 | Msa0214850:CDS | 35.0% |
| !! | TTGAAGGTGTTAGTGTAAAG+TGG | - | chr2_1:59485159-59485178 | Msa0214850:CDS | 35.0% |
| CAATTGATGAAGAGCTTCAA+AGG | - | chr2_1:59485447-59485466 | Msa0214850:intron | 35.0% | |
| ATAGTTGAGATAGTTAGCCA+TGG | + | chr2_1:59485600-59485619 | None:intergenic | 35.0% | |
| ACTTGGATCTCACTAATGTT+GGG | - | chr2_1:59485630-59485649 | Msa0214850:intron | 35.0% | |
| TATCACAAGTATAGAACGGT+TGG | + | chr2_1:59485693-59485712 | None:intergenic | 35.0% | |
| CCTCTATCACAAGTATAGAA+CGG | + | chr2_1:59485697-59485716 | None:intergenic | 35.0% | |
| CAACTTCTTCATCTTCTTCT+CGG | + | chr2_1:59485748-59485767 | None:intergenic | 35.0% | |
| !! | TGTTCATAATGGGCACAATA+AGG | - | chr2_1:59485766-59485785 | Msa0214850:CDS | 35.0% |
| GAATTTGACGTACATGAATC+TGG | - | chr2_1:59485858-59485877 | Msa0214850:CDS | 35.0% | |
| AATCATCTGCATGATTTAGC+CGG | - | chr2_1:59485894-59485913 | Msa0214850:CDS | 35.0% | |
| ! | ATGATTTAGCCGGTGAATTT+TGG | - | chr2_1:59485904-59485923 | Msa0214850:CDS | 35.0% |
| ACAATAGGACCAAAATTCAC+CGG | + | chr2_1:59485916-59485935 | None:intergenic | 35.0% | |
| CTAAATATTATGTCCTCGTG+CGG | + | chr2_1:59485956-59485975 | None:intergenic | 35.0% | |
| ! | TGGTAAGATTTTGTCGACAA+TGG | - | chr2_1:59485996-59486015 | Msa0214850:CDS | 35.0% |
| ! | AAGATTTTGTCGACAATGGT+TGG | - | chr2_1:59486000-59486019 | Msa0214850:CDS | 35.0% |
| TGATGTCTGTTCATATCATG+GGG | - | chr2_1:59486119-59486138 | Msa0214850:CDS | 35.0% | |
| TTTCAACAGATGACACTTTC+GGG | - | chr2_1:59486214-59486233 | Msa0214850:CDS | 35.0% | |
| TCACAACAAATCACAAAGAC+AGG | - | chr2_1:59486296-59486315 | Msa0214850:CDS | 35.0% | |
| GTTCATGTTCAGTAATGCAA+AGG | + | chr2_1:59486417-59486436 | None:intergenic | 35.0% | |
| AGCAAAGAAGAACAAGATCT+AGG | - | chr2_1:59486601-59486620 | Msa0214850:CDS | 35.0% | |
| ! | ACAAAGTTTAGGACTTGACG+AGG | + | chr2_1:59484918-59484937 | None:intergenic | 40.0% |
| GTCCCGATTGAACAAAGTTT+AGG | + | chr2_1:59484929-59484948 | None:intergenic | 40.0% | |
| TGGTGAATTGTGCGTTGAAT+TGG | + | chr2_1:59484968-59484987 | None:intergenic | 40.0% | |
| ACATTATGATAGGGACTCCT+CGG | - | chr2_1:59485220-59485239 | Msa0214850:CDS | 40.0% | |
| ! | TTAGCTCTCTCCATCACATA+AGG | + | chr2_1:59485320-59485339 | None:intergenic | 40.0% |
| !! | GAGTGTTGAAACTCATTGGA+TGG | + | chr2_1:59485424-59485443 | None:intergenic | 40.0% |
| !! | GCAAGAGTGTTGAAACTCAT+TGG | + | chr2_1:59485428-59485447 | None:intergenic | 40.0% |
| !! | AAACGCGGTTACTTGTTGTA+TGG | - | chr2_1:59485539-59485558 | Msa0214850:intron | 40.0% |
| GACTTGGATCTCACTAATGT+TGG | - | chr2_1:59485629-59485648 | Msa0214850:intron | 40.0% | |
| CTTGGATCTCACTAATGTTG+GGG | - | chr2_1:59485631-59485650 | Msa0214850:intron | 40.0% | |
| CCGTTCTATACTTGTGATAG+AGG | - | chr2_1:59485694-59485713 | Msa0214850:CDS | 40.0% | |
| CAAACTATGTACATACGACG+AGG | - | chr2_1:59486052-59486071 | Msa0214850:CDS | 40.0% | |
| GGACTATTGAATGCAGTAGA+TGG | - | chr2_1:59486235-59486254 | Msa0214850:CDS | 40.0% | |
| TGAATGCAGTAGATGGTCTT+TGG | - | chr2_1:59486242-59486261 | Msa0214850:CDS | 40.0% | |
| TCTGTTAAGACCTGGTAGAA+TGG | - | chr2_1:59486330-59486349 | Msa0214850:CDS | 40.0% | |
| ATTTGCTTGTCCATTCTACC+AGG | + | chr2_1:59486343-59486362 | None:intergenic | 40.0% | |
| AACTCTTCTGCAATTTCAGC+TGG | + | chr2_1:59486484-59486503 | None:intergenic | 40.0% | |
| GGAATTTGATAAGGTCTTGC+AGG | + | chr2_1:59486534-59486553 | None:intergenic | 40.0% | |
| ! | TGGCTTGGAGGAATTTGATA+AGG | + | chr2_1:59486543-59486562 | None:intergenic | 40.0% |
| ATTCCTCCAAGCCAAGAAAA+TGG | - | chr2_1:59486549-59486568 | Msa0214850:CDS | 40.0% | |
| ! | ACAAAGTTTAGGACTTGACG+AGG | + | chr2_1:59484918-59484937 | None:intergenic | 40.0% |
| GTCCCGATTGAACAAAGTTT+AGG | + | chr2_1:59484929-59484948 | None:intergenic | 40.0% | |
| TGGTGAATTGTGCGTTGAAT+TGG | + | chr2_1:59484968-59484987 | None:intergenic | 40.0% | |
| ACATTATGATAGGGACTCCT+CGG | - | chr2_1:59485220-59485239 | Msa0214850:CDS | 40.0% | |
| ! | TTAGCTCTCTCCATCACATA+AGG | + | chr2_1:59485320-59485339 | None:intergenic | 40.0% |
| !! | GAGTGTTGAAACTCATTGGA+TGG | + | chr2_1:59485424-59485443 | None:intergenic | 40.0% |
| !! | GCAAGAGTGTTGAAACTCAT+TGG | + | chr2_1:59485428-59485447 | None:intergenic | 40.0% |
| !! | AAACGCGGTTACTTGTTGTA+TGG | - | chr2_1:59485539-59485558 | Msa0214850:intron | 40.0% |
| GACTTGGATCTCACTAATGT+TGG | - | chr2_1:59485629-59485648 | Msa0214850:intron | 40.0% | |
| CTTGGATCTCACTAATGTTG+GGG | - | chr2_1:59485631-59485650 | Msa0214850:intron | 40.0% | |
| CCGTTCTATACTTGTGATAG+AGG | - | chr2_1:59485694-59485713 | Msa0214850:CDS | 40.0% | |
| CAAACTATGTACATACGACG+AGG | - | chr2_1:59486052-59486071 | Msa0214850:CDS | 40.0% | |
| GGACTATTGAATGCAGTAGA+TGG | - | chr2_1:59486235-59486254 | Msa0214850:CDS | 40.0% | |
| TGAATGCAGTAGATGGTCTT+TGG | - | chr2_1:59486242-59486261 | Msa0214850:CDS | 40.0% | |
| TCTGTTAAGACCTGGTAGAA+TGG | - | chr2_1:59486330-59486349 | Msa0214850:CDS | 40.0% | |
| ATTTGCTTGTCCATTCTACC+AGG | + | chr2_1:59486343-59486362 | None:intergenic | 40.0% | |
| AACTCTTCTGCAATTTCAGC+TGG | + | chr2_1:59486484-59486503 | None:intergenic | 40.0% | |
| GGAATTTGATAAGGTCTTGC+AGG | + | chr2_1:59486534-59486553 | None:intergenic | 40.0% | |
| ! | TGGCTTGGAGGAATTTGATA+AGG | + | chr2_1:59486543-59486562 | None:intergenic | 40.0% |
| ATTCCTCCAAGCCAAGAAAA+TGG | - | chr2_1:59486549-59486568 | Msa0214850:CDS | 40.0% | |
| !! | CAAGCCAGTTTTATCTGCAG+TGG | - | chr2_1:59484851-59484870 | Msa0214850:CDS | 45.0% |
| AGTTCGCATTAGCGCAATTG+AGG | + | chr2_1:59484877-59484896 | None:intergenic | 45.0% | |
| CTTCTGCTGCCTCAAAAACT+TGG | + | chr2_1:59485025-59485044 | None:intergenic | 45.0% | |
| !! | TCTTATTTCTGACACAGCCG+AGG | + | chr2_1:59485240-59485259 | None:intergenic | 45.0% |
| ATAGAAGAACCGGGAAAGCT+TGG | - | chr2_1:59485516-59485535 | Msa0214850:intron | 45.0% | |
| !! | TACTTGTTGTATGGTCCTCC+TGG | - | chr2_1:59485548-59485567 | Msa0214850:intron | 45.0% |
| AACATGACTTATACCGCACG+AGG | - | chr2_1:59485940-59485959 | Msa0214850:CDS | 45.0% | |
| ! | TCGACAATGGTTGGTCAAGT+TGG | - | chr2_1:59486009-59486028 | Msa0214850:CDS | 45.0% |
| TGTACATACGACGAGGTCAT+AGG | - | chr2_1:59486059-59486078 | Msa0214850:CDS | 45.0% | |
| ! | CTCTTCCTGGACCATTTTCT+TGG | + | chr2_1:59486563-59486582 | None:intergenic | 45.0% |
| CTTCTCTCTTAGTCTCTTCC+TGG | + | chr2_1:59486576-59486595 | None:intergenic | 45.0% | |
| !! | CAAGCCAGTTTTATCTGCAG+TGG | - | chr2_1:59484851-59484870 | Msa0214850:CDS | 45.0% |
| AGTTCGCATTAGCGCAATTG+AGG | + | chr2_1:59484877-59484896 | None:intergenic | 45.0% | |
| CTTCTGCTGCCTCAAAAACT+TGG | + | chr2_1:59485025-59485044 | None:intergenic | 45.0% | |
| !! | TCTTATTTCTGACACAGCCG+AGG | + | chr2_1:59485240-59485259 | None:intergenic | 45.0% |
| ATAGAAGAACCGGGAAAGCT+TGG | - | chr2_1:59485516-59485535 | Msa0214850:intron | 45.0% | |
| !! | TACTTGTTGTATGGTCCTCC+TGG | - | chr2_1:59485548-59485567 | Msa0214850:intron | 45.0% |
| AACATGACTTATACCGCACG+AGG | - | chr2_1:59485940-59485959 | Msa0214850:CDS | 45.0% | |
| ! | TCGACAATGGTTGGTCAAGT+TGG | - | chr2_1:59486009-59486028 | Msa0214850:CDS | 45.0% |
| TGTACATACGACGAGGTCAT+AGG | - | chr2_1:59486059-59486078 | Msa0214850:CDS | 45.0% | |
| ! | CTCTTCCTGGACCATTTTCT+TGG | + | chr2_1:59486563-59486582 | None:intergenic | 45.0% |
| CTTCTCTCTTAGTCTCTTCC+TGG | + | chr2_1:59486576-59486595 | None:intergenic | 45.0% | |
| GAGGCCACTGCAGATAAAAC+TGG | + | chr2_1:59484858-59484877 | None:intergenic | 50.0% | |
| TTGTATGGTCCTCCTGGTAC+TGG | - | chr2_1:59485554-59485573 | Msa0214850:intron | 50.0% | |
| TGTATGGTCCTCCTGGTACT+GGG | - | chr2_1:59485555-59485574 | Msa0214850:intron | 50.0% | |
| AAGCTAGACTTCCCAGTACC+AGG | + | chr2_1:59485569-59485588 | None:intergenic | 50.0% | |
| ! | GTCTAGCTTGATTGCAGCCA+TGG | - | chr2_1:59485580-59485599 | Msa0214850:intron | 50.0% |
| GATGGTCTTTGGTCATGCTG+TGG | - | chr2_1:59486253-59486272 | Msa0214850:CDS | 50.0% | |
| TCTTTGGTCATGCTGTGGAG+AGG | - | chr2_1:59486258-59486277 | Msa0214850:CDS | 50.0% | |
| GATCCTGCTCTGTTAAGACC+TGG | - | chr2_1:59486322-59486341 | Msa0214850:CDS | 50.0% | |
| CTACCAGGTCTTAACAGAGC+AGG | + | chr2_1:59486328-59486347 | None:intergenic | 50.0% | |
| !!! | GGACCATTTTCTTGGCTTGG+AGG | + | chr2_1:59486555-59486574 | None:intergenic | 50.0% |
| ! | CCTGGACCATTTTCTTGGCT+TGG | + | chr2_1:59486558-59486577 | None:intergenic | 50.0% |
| CCAAGCCAAGAAAATGGTCC+AGG | - | chr2_1:59486555-59486574 | Msa0214850:CDS | 50.0% | |
| GAGGCCACTGCAGATAAAAC+TGG | + | chr2_1:59484858-59484877 | None:intergenic | 50.0% | |
| TTGTATGGTCCTCCTGGTAC+TGG | - | chr2_1:59485554-59485573 | Msa0214850:intron | 50.0% | |
| TGTATGGTCCTCCTGGTACT+GGG | - | chr2_1:59485555-59485574 | Msa0214850:intron | 50.0% | |
| AAGCTAGACTTCCCAGTACC+AGG | + | chr2_1:59485569-59485588 | None:intergenic | 50.0% | |
| ! | GTCTAGCTTGATTGCAGCCA+TGG | - | chr2_1:59485580-59485599 | Msa0214850:intron | 50.0% |
| GATGGTCTTTGGTCATGCTG+TGG | - | chr2_1:59486253-59486272 | Msa0214850:CDS | 50.0% | |
| TCTTTGGTCATGCTGTGGAG+AGG | - | chr2_1:59486258-59486277 | Msa0214850:CDS | 50.0% | |
| GATCCTGCTCTGTTAAGACC+TGG | - | chr2_1:59486322-59486341 | Msa0214850:CDS | 50.0% | |
| CTACCAGGTCTTAACAGAGC+AGG | + | chr2_1:59486328-59486347 | None:intergenic | 50.0% | |
| !!! | GGACCATTTTCTTGGCTTGG+AGG | + | chr2_1:59486555-59486574 | None:intergenic | 50.0% |
| ! | CCTGGACCATTTTCTTGGCT+TGG | + | chr2_1:59486558-59486577 | None:intergenic | 50.0% |
| CCAAGCCAAGAAAATGGTCC+AGG | - | chr2_1:59486555-59486574 | Msa0214850:CDS | 50.0% | |
| GAGGCAGCAGAAGCCTATCT+AGG | - | chr2_1:59485032-59485051 | Msa0214850:CDS | 55.0% | |
| ACCGGGAAAGCTTGGAAACG+CGG | - | chr2_1:59485524-59485543 | Msa0214850:intron | 55.0% | |
| ACCGCGTTTCCAAGCTTTCC+CGG | + | chr2_1:59485528-59485547 | None:intergenic | 55.0% | |
| CTAGACTTCCCAGTACCAGG+AGG | + | chr2_1:59485566-59485585 | None:intergenic | 55.0% | |
| GAGGCAGCAGAAGCCTATCT+AGG | - | chr2_1:59485032-59485051 | Msa0214850:CDS | 55.0% | |
| ACCGGGAAAGCTTGGAAACG+CGG | - | chr2_1:59485524-59485543 | Msa0214850:intron | 55.0% | |
| ACCGCGTTTCCAAGCTTTCC+CGG | + | chr2_1:59485528-59485547 | None:intergenic | 55.0% | |
| CTAGACTTCCCAGTACCAGG+AGG | + | chr2_1:59485566-59485585 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 59484819 | 59486651 | 59484819 | ID=Msa0214850;Name=Msa0214850 |
| chr2_1 | mRNA | 59484819 | 59486651 | 59484819 | ID=Msa0214850-mRNA-1;Parent=Msa0214850;Name=Msa0214850-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|1|0|1|1|1|2|0|465 |
| chr2_1 | exon | 59485683 | 59486651 | 59485683 | ID=Msa0214850-mRNA-1:exon:16444;Parent=Msa0214850-mRNA-1 |
| chr2_1 | exon | 59484819 | 59485247 | 59484819 | ID=Msa0214850-mRNA-1:exon:16443;Parent=Msa0214850-mRNA-1 |
| chr2_1 | CDS | 59485683 | 59486651 | 59485683 | ID=Msa0214850-mRNA-1:cds;Parent=Msa0214850-mRNA-1 |
| chr2_1 | CDS | 59484819 | 59485247 | 59484819 | ID=Msa0214850-mRNA-1:cds;Parent=Msa0214850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
