Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294240 | AES66638.1 | 96.061 | 457 | 18 | 0 | 1 | 457 | 1 | 457 | 0.0 | 917 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294240 | sp|Q147F9|AATPC_ARATH | 52.758 | 417 | 196 | 1 | 25 | 440 | 30 | 446 | 2.01e-157 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294240 | G7IH73 | 96.061 | 457 | 18 | 0 | 1 | 457 | 1 | 457 | 0.0 | 917 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0214850 | Msa0294240 | 0.880076 | 7.393462e-70 | -8.615850e-47 |
| Msa0227470 | Msa0294240 | 0.803176 | 3.950748e-49 | -8.615850e-47 |
| Msa0294240 | Msa0332810 | 0.823755 | 1.167515e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294240 | MtrunA17_Chr2g0315911 | 96.061 | 457 | 18 | 0 | 1 | 457 | 1 | 457 | 0.0 | 917 |
| Msa0294240 | MtrunA17_Chr2g0315971 | 84.222 | 450 | 68 | 3 | 7 | 456 | 1 | 447 | 0.0 | 791 |
| Msa0294240 | MtrunA17_Chr2g0315971 | 65.394 | 419 | 94 | 6 | 44 | 461 | 361 | 729 | 1.21e-171 | 499 |
| Msa0294240 | MtrunA17_Chr2g0315991 | 80.000 | 480 | 70 | 4 | 1 | 461 | 1 | 473 | 0.0 | 786 |
| Msa0294240 | MtrunA17_Chr2g0315921 | 84.821 | 448 | 59 | 3 | 3 | 443 | 1 | 446 | 0.0 | 781 |
| Msa0294240 | MtrunA17_Chr2g0315981 | 80.043 | 461 | 84 | 3 | 7 | 461 | 1 | 459 | 0.0 | 766 |
| Msa0294240 | MtrunA17_Chr2g0316021 | 74.723 | 451 | 79 | 2 | 7 | 457 | 1 | 416 | 0.0 | 689 |
| Msa0294240 | MtrunA17_Chr2g0316041 | 83.291 | 395 | 64 | 1 | 65 | 457 | 1 | 395 | 0.0 | 672 |
| Msa0294240 | MtrunA17_Chr8g0372701 | 45.788 | 463 | 235 | 5 | 6 | 455 | 15 | 474 | 3.12e-149 | 434 |
| Msa0294240 | MtrunA17_Chr5g0404651 | 45.648 | 471 | 243 | 6 | 1 | 462 | 7 | 473 | 1.90e-147 | 430 |
| Msa0294240 | MtrunA17_Chr5g0404661 | 42.444 | 450 | 233 | 7 | 21 | 447 | 36 | 482 | 1.65e-120 | 360 |
| Msa0294240 | MtrunA17_Chr4g0059811 | 41.237 | 485 | 230 | 10 | 16 | 455 | 15 | 489 | 3.27e-115 | 348 |
| Msa0294240 | MtrunA17_Chr1g0155131 | 43.326 | 457 | 222 | 10 | 16 | 445 | 12 | 458 | 1.67e-112 | 339 |
| Msa0294240 | MtrunA17_Chr2g0292561 | 40.351 | 456 | 246 | 5 | 16 | 451 | 15 | 464 | 8.03e-112 | 338 |
| Msa0294240 | MtrunA17_Chr7g0215951 | 40.741 | 459 | 225 | 9 | 16 | 435 | 10 | 460 | 1.81e-107 | 327 |
| Msa0294240 | MtrunA17_Chr6g0452451 | 38.961 | 462 | 232 | 9 | 16 | 434 | 14 | 468 | 2.02e-105 | 323 |
| Msa0294240 | MtrunA17_Chr6g0452401 | 39.825 | 457 | 212 | 11 | 30 | 435 | 4 | 448 | 5.23e-103 | 315 |
| Msa0294240 | MtrunA17_Chr6g0452371 | 40.260 | 462 | 220 | 11 | 16 | 435 | 14 | 461 | 7.43e-103 | 317 |
| Msa0294240 | MtrunA17_Chr6g0466811 | 39.427 | 454 | 238 | 11 | 5 | 435 | 12 | 451 | 9.48e-102 | 313 |
| Msa0294240 | MtrunA17_Chr4g0072491 | 37.344 | 482 | 250 | 10 | 16 | 460 | 10 | 476 | 2.93e-101 | 312 |
| Msa0294240 | MtrunA17_Chr6g0452391 | 39.264 | 489 | 244 | 12 | 16 | 459 | 12 | 492 | 9.19e-99 | 306 |
| Msa0294240 | MtrunA17_Chr1g0155121 | 37.660 | 470 | 242 | 9 | 7 | 436 | 1 | 459 | 4.58e-98 | 303 |
| Msa0294240 | MtrunA17_Chr2g0308991 | 35.892 | 482 | 253 | 10 | 14 | 457 | 3 | 466 | 2.08e-96 | 300 |
| Msa0294240 | MtrunA17_Chr6g0452411 | 43.617 | 376 | 158 | 8 | 104 | 435 | 1 | 366 | 2.89e-96 | 296 |
| Msa0294240 | MtrunA17_Chr3g0134831 | 49.655 | 290 | 127 | 4 | 162 | 435 | 1 | 287 | 4.83e-93 | 283 |
| Msa0294240 | MtrunA17_Chr6g0452361 | 52.381 | 231 | 104 | 3 | 211 | 435 | 1 | 231 | 6.31e-78 | 244 |
| Msa0294240 | MtrunA17_Chr3g0127381 | 33.947 | 380 | 212 | 10 | 68 | 437 | 66 | 416 | 1.69e-69 | 229 |
| Msa0294240 | MtrunA17_Chr6g0452481 | 46.032 | 252 | 127 | 5 | 191 | 435 | 5 | 254 | 9.84e-68 | 219 |
| Msa0294240 | MtrunA17_Chr7g0276031 | 33.053 | 357 | 200 | 8 | 65 | 415 | 61 | 384 | 1.49e-65 | 218 |
| Msa0294240 | MtrunA17_Chr8g0346371 | 33.079 | 393 | 226 | 11 | 54 | 435 | 48 | 414 | 1.00e-62 | 211 |
| Msa0294240 | MtrunA17_Chr5g0404671 | 62.857 | 105 | 37 | 1 | 333 | 435 | 1 | 105 | 1.27e-36 | 132 |
| Msa0294240 | MtrunA17_Chr2g0315961 | 92.424 | 66 | 5 | 0 | 366 | 431 | 1 | 66 | 1.35e-36 | 129 |
| Msa0294240 | MtrunA17_Chr5g0404681 | 45.299 | 117 | 61 | 2 | 149 | 265 | 39 | 152 | 4.23e-32 | 120 |
| Msa0294240 | MtrunA17_Chr5g0404691 | 48.299 | 147 | 69 | 3 | 291 | 435 | 8 | 149 | 1.35e-31 | 119 |
| Msa0294240 | MtrunA17_Chr1g0148871 | 43.089 | 123 | 70 | 0 | 318 | 440 | 14 | 136 | 8.69e-29 | 111 |
| Msa0294240 | MtrunA17_Chr3g0145011 | 30.047 | 213 | 131 | 7 | 190 | 393 | 129 | 332 | 3.77e-15 | 77.0 |
| Msa0294240 | MtrunA17_Chr3g0141901 | 26.855 | 283 | 185 | 9 | 190 | 459 | 126 | 399 | 9.24e-15 | 75.9 |
| Msa0294240 | MtrunA17_Chr3g0108321 | 28.313 | 166 | 106 | 4 | 216 | 373 | 171 | 331 | 1.42e-14 | 75.1 |
| Msa0294240 | MtrunA17_Chr7g0262801 | 30.270 | 185 | 109 | 8 | 210 | 383 | 194 | 369 | 1.53e-13 | 72.4 |
| Msa0294240 | MtrunA17_Chr1g0182711 | 29.730 | 185 | 110 | 8 | 210 | 383 | 195 | 370 | 3.27e-13 | 71.2 |
| Msa0294240 | MtrunA17_Chr1g0192151 | 30.488 | 164 | 99 | 5 | 230 | 384 | 193 | 350 | 3.50e-13 | 71.2 |
| Msa0294240 | MtrunA17_Chr4g0014731 | 30.488 | 164 | 99 | 5 | 230 | 384 | 194 | 351 | 3.58e-13 | 71.2 |
| Msa0294240 | MtrunA17_Chr7g0255721 | 32.026 | 153 | 88 | 6 | 228 | 372 | 408 | 552 | 6.65e-13 | 71.2 |
| Msa0294240 | MtrunA17_Chr4g0050561 | 29.609 | 179 | 105 | 7 | 210 | 376 | 163 | 332 | 1.27e-12 | 69.3 |
| Msa0294240 | MtrunA17_Chr7g0260601 | 29.319 | 191 | 122 | 5 | 206 | 388 | 242 | 427 | 1.98e-12 | 69.3 |
| Msa0294240 | MtrunA17_Chr5g0429571 | 31.214 | 173 | 106 | 5 | 204 | 368 | 313 | 480 | 4.40e-12 | 68.6 |
| Msa0294240 | MtrunA17_Chr7g0217421 | 29.121 | 182 | 113 | 6 | 201 | 373 | 36 | 210 | 5.85e-12 | 67.4 |
| Msa0294240 | MtrunA17_Chr8g0362771 | 29.221 | 154 | 92 | 5 | 226 | 370 | 258 | 403 | 1.32e-11 | 67.0 |
| Msa0294240 | MtrunA17_Chr3g0104211 | 30.857 | 175 | 108 | 5 | 204 | 370 | 304 | 473 | 1.44e-11 | 67.0 |
| Msa0294240 | MtrunA17_Chr8g0388371 | 30.994 | 171 | 97 | 6 | 222 | 376 | 421 | 586 | 2.23e-11 | 66.2 |
| Msa0294240 | MtrunA17_Chr1g0211521 | 41.053 | 95 | 50 | 3 | 366 | 454 | 5 | 99 | 3.06e-11 | 60.5 |
| Msa0294240 | MtrunA17_Chr7g0264521 | 24.096 | 249 | 144 | 9 | 161 | 373 | 136 | 375 | 3.46e-11 | 65.9 |
| Msa0294240 | MtrunA17_Chr7g0264521 | 27.684 | 177 | 115 | 5 | 205 | 373 | 480 | 651 | 6.10e-11 | 64.7 |
| Msa0294240 | MtrunA17_Chr1g0180791 | 28.571 | 168 | 107 | 5 | 213 | 372 | 487 | 649 | 4.05e-11 | 65.5 |
| Msa0294240 | MtrunA17_Chr3g0086401 | 26.267 | 217 | 138 | 6 | 211 | 417 | 105 | 309 | 4.50e-11 | 65.1 |
| Msa0294240 | MtrunA17_Chr2g0327121 | 28.571 | 168 | 107 | 5 | 213 | 372 | 489 | 651 | 4.91e-11 | 65.1 |
| Msa0294240 | MtrunA17_Chr3g0135761 | 31.928 | 166 | 90 | 7 | 218 | 370 | 232 | 387 | 9.09e-11 | 64.3 |
| Msa0294240 | MtrunA17_Chr7g0255901 | 27.950 | 161 | 103 | 4 | 236 | 388 | 670 | 825 | 9.34e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294240 | AT3G50940.1 | 52.758 | 417 | 196 | 1 | 25 | 440 | 30 | 446 | 2.04e-158 | 456 |
| Msa0294240 | AT3G50930.1 | 48.206 | 446 | 212 | 5 | 23 | 452 | 74 | 516 | 6.86e-148 | 434 |
| Msa0294240 | AT2G18193.1 | 43.400 | 447 | 223 | 5 | 16 | 447 | 20 | 451 | 5.49e-128 | 380 |
| Msa0294240 | AT5G17740.1 | 40.959 | 459 | 258 | 4 | 16 | 462 | 19 | 476 | 1.11e-122 | 368 |
| Msa0294240 | AT2G18190.1 | 42.366 | 465 | 239 | 6 | 4 | 450 | 5 | 458 | 7.56e-122 | 365 |
| Msa0294240 | AT5G17760.1 | 41.597 | 476 | 254 | 7 | 10 | 463 | 9 | 482 | 3.98e-121 | 363 |
| Msa0294240 | AT5G17730.1 | 41.189 | 454 | 244 | 10 | 10 | 447 | 9 | 455 | 4.89e-119 | 357 |
| Msa0294240 | AT3G28600.1 | 41.342 | 462 | 217 | 9 | 16 | 441 | 9 | 452 | 4.16e-114 | 344 |
| Msa0294240 | AT3G28510.1 | 40.263 | 457 | 231 | 8 | 16 | 438 | 13 | 461 | 3.75e-111 | 338 |
| Msa0294240 | AT3G28540.2 | 39.956 | 458 | 218 | 8 | 16 | 432 | 13 | 454 | 1.67e-109 | 333 |
| Msa0294240 | AT3G28540.1 | 39.956 | 458 | 218 | 8 | 16 | 432 | 13 | 454 | 1.97e-109 | 333 |
| Msa0294240 | AT4G05380.1 | 41.226 | 473 | 236 | 11 | 3 | 447 | 1 | 459 | 5.84e-109 | 330 |
| Msa0294240 | AT3G28610.1 | 39.916 | 476 | 225 | 11 | 3 | 441 | 1 | 452 | 2.69e-108 | 329 |
| Msa0294240 | AT3G28580.1 | 39.355 | 465 | 238 | 10 | 1 | 431 | 1 | 455 | 2.71e-107 | 327 |
| Msa0294240 | AT4G25835.1 | 39.381 | 452 | 237 | 9 | 16 | 437 | 10 | 454 | 1.69e-105 | 323 |
| Msa0294240 | AT5G40010.1 | 40.088 | 454 | 228 | 9 | 16 | 431 | 13 | 460 | 6.46e-104 | 319 |
| Msa0294240 | AT5G40000.1 | 39.167 | 480 | 239 | 10 | 7 | 451 | 4 | 465 | 2.94e-101 | 311 |
| Msa0294240 | AT5G17750.1 | 40.342 | 409 | 205 | 9 | 5 | 403 | 11 | 390 | 1.26e-100 | 306 |
| Msa0294240 | AT5G57480.1 | 35.652 | 460 | 252 | 6 | 16 | 437 | 10 | 463 | 5.12e-100 | 309 |
| Msa0294240 | AT1G43910.1 | 38.004 | 471 | 245 | 8 | 4 | 443 | 1 | 455 | 1.98e-99 | 306 |
| Msa0294240 | AT3G28600.2 | 39.341 | 455 | 197 | 8 | 16 | 441 | 9 | 413 | 2.40e-99 | 305 |
| Msa0294240 | AT3G28570.1 | 38.793 | 464 | 234 | 11 | 16 | 456 | 11 | 447 | 2.56e-99 | 305 |
| Msa0294240 | AT3G28570.2 | 37.996 | 479 | 246 | 12 | 2 | 456 | 3 | 454 | 3.02e-99 | 305 |
| Msa0294240 | AT3G28520.1 | 39.278 | 471 | 244 | 8 | 18 | 455 | 1 | 462 | 1.33e-96 | 299 |
| Msa0294240 | AT3G28580.2 | 38.789 | 446 | 245 | 10 | 1 | 431 | 1 | 433 | 1.38e-95 | 296 |
| Msa0294240 | AT4G30250.1 | 36.229 | 472 | 249 | 12 | 7 | 437 | 1 | 461 | 2.32e-94 | 295 |
| Msa0294240 | AT4G30250.2 | 36.229 | 472 | 249 | 12 | 7 | 437 | 3 | 463 | 2.61e-94 | 295 |
| Msa0294240 | AT2G46620.1 | 33.333 | 426 | 230 | 10 | 54 | 455 | 49 | 444 | 5.64e-75 | 244 |
| Msa0294240 | AT5G17760.2 | 39.623 | 318 | 175 | 4 | 10 | 312 | 9 | 324 | 2.91e-71 | 229 |
| Msa0294240 | AT3G29800.1 | 31.448 | 442 | 232 | 13 | 30 | 449 | 11 | 403 | 4.29e-63 | 211 |
| Msa0294240 | AT4G05340.1 | 60.294 | 68 | 27 | 0 | 323 | 390 | 26 | 93 | 3.19e-20 | 85.9 |
| Msa0294240 | AT3G28560.1 | 29.534 | 193 | 106 | 5 | 35 | 214 | 36 | 211 | 6.25e-18 | 84.0 |
| Msa0294240 | AT5G58290.1 | 26.214 | 206 | 137 | 6 | 204 | 401 | 152 | 350 | 4.17e-15 | 77.4 |
| Msa0294240 | AT1G45000.1 | 28.521 | 284 | 179 | 11 | 190 | 459 | 126 | 399 | 4.27e-15 | 77.4 |
| Msa0294240 | AT5G43010.1 | 30.256 | 195 | 119 | 6 | 190 | 376 | 126 | 311 | 4.31e-15 | 77.4 |
| Msa0294240 | AT3G05530.1 | 31.098 | 164 | 98 | 5 | 230 | 384 | 194 | 351 | 1.83e-13 | 72.4 |
| Msa0294240 | AT4G29040.1 | 30.337 | 178 | 105 | 7 | 217 | 383 | 198 | 367 | 3.64e-13 | 71.6 |
| Msa0294240 | AT2G20140.1 | 29.714 | 175 | 110 | 5 | 217 | 383 | 198 | 367 | 6.67e-13 | 70.9 |
| Msa0294240 | AT5G19990.2 | 29.050 | 179 | 106 | 7 | 210 | 376 | 107 | 276 | 1.29e-12 | 69.3 |
| Msa0294240 | AT5G19990.1 | 29.609 | 179 | 105 | 7 | 210 | 376 | 165 | 334 | 2.10e-12 | 69.3 |
| Msa0294240 | AT5G19990.3 | 29.609 | 179 | 105 | 7 | 210 | 376 | 165 | 334 | 2.10e-12 | 69.3 |
| Msa0294240 | AT5G20000.1 | 29.609 | 179 | 105 | 7 | 210 | 376 | 165 | 334 | 2.22e-12 | 68.9 |
| Msa0294240 | AT5G58870.1 | 30.857 | 175 | 108 | 5 | 204 | 370 | 326 | 495 | 6.68e-12 | 68.6 |
| Msa0294240 | AT2G03670.1 | 31.013 | 158 | 85 | 6 | 234 | 376 | 49 | 197 | 1.11e-11 | 67.4 |
| Msa0294240 | AT2G03670.2 | 31.013 | 158 | 85 | 6 | 234 | 376 | 49 | 197 | 1.36e-11 | 66.6 |
| Msa0294240 | AT3G47060.1 | 30.508 | 177 | 110 | 5 | 204 | 372 | 322 | 493 | 3.08e-11 | 66.2 |
Find 73 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGATTGAAGTTCTTCT+TGG | 0.223470 | 2_3:-46006282 | Msa0294240:CDS |
| CTTCTCTCTTAGTCTCTTCC+TGG | 0.235607 | 2_3:+46006151 | None:intergenic |
| TTTCAACAGATGACACTTTC+GGG | 0.253746 | 2_3:-46006510 | Msa0294240:intron |
| ATTGGATGGTTGAACTTAAT+AGG | 0.269533 | 2_3:+46007317 | None:intergenic |
| TTGAAATTCTTCAATGACTA+TGG | 0.286598 | 2_3:+46007739 | None:intergenic |
| AAGGGAAATTAAGAATGATT+TGG | 0.292518 | 2_3:-46007258 | Msa0294240:CDS |
| TTGTATGGTCCTCCTGGTAC+TGG | 0.303664 | 2_3:-46007170 | Msa0294240:CDS |
| GATGAAGAAGTTGTTCATAA+TGG | 0.310288 | 2_3:-46006969 | Msa0294240:CDS |
| CAACTTCTTCATCTTCTTCT+CGG | 0.328790 | 2_3:+46006979 | None:intergenic |
| CAAGAATTCGACATTATGAT+AGG | 0.351643 | 2_3:-46007514 | Msa0294240:CDS |
| TGAATGCAGTAGATGGTCTT+TGG | 0.365588 | 2_3:-46006482 | Msa0294240:CDS |
| TGTTCATAATGGGCACAATA+AGG | 0.386190 | 2_3:-46006958 | Msa0294240:intron |
| AGTTAAAGCAACCAAATCTA+AGG | 0.392234 | 2_3:-46007642 | Msa0294240:CDS |
| ATGAAGAAGTTGTTCATAAT+GGG | 0.392993 | 2_3:-46006968 | Msa0294240:CDS |
| ACCGCGTTTCCAAGCTTTCC+CGG | 0.395418 | 2_3:+46007199 | None:intergenic |
| GTCCCGATTGAACAAAGTTT+AGG | 0.399697 | 2_3:+46007798 | None:intergenic |
| AGTTGCTTTAGTTCCTAGAT+AGG | 0.400041 | 2_3:+46007679 | None:intergenic |
| GGAATTTGATAAGGTCTTGC+AGG | 0.402644 | 2_3:+46006193 | None:intergenic |
| ACTTGGATCTCACTAATGTT+GGG | 0.408726 | 2_3:-46007094 | Msa0294240:CDS |
| GAGGCAGCAGAAGCCTATCT+AGG | 0.421960 | 2_3:-46007692 | Msa0294240:CDS |
| AGTCCTAAACTTTGTTCAAT+CGG | 0.423323 | 2_3:-46007801 | Msa0294240:CDS |
| TGGCTTGGAGGAATTTGATA+AGG | 0.429033 | 2_3:+46006184 | None:intergenic |
| ATTCCTCCAAGCCAAGAAAA+TGG | 0.431539 | 2_3:-46006175 | Msa0294240:CDS |
| GAGGCCACTGCAGATAAAAC+TGG | 0.436495 | 2_3:+46007869 | None:intergenic |
| TGGTGAATTGTGCGTTGAAT+TGG | 0.444709 | 2_3:+46007759 | None:intergenic |
| CCGTTCTATACTTGTGATAG+AGG | 0.447088 | 2_3:-46007030 | Msa0294240:CDS |
| GTCCTAAACTTTGTTCAATC+GGG | 0.449195 | 2_3:-46007800 | Msa0294240:CDS |
| AACTCCTCTGCAATTTCAGC+TGG | 0.451084 | 2_3:+46006243 | None:intergenic |
| GACTTGGATCTCACTAATGT+TGG | 0.453484 | 2_3:-46007095 | Msa0294240:CDS |
| TTGAAGGTGTTAGTGTAAAG+TGG | 0.455356 | 2_3:-46007565 | Msa0294240:CDS |
| TACTTGTTGTATGGTCCTCC+TGG | 0.457478 | 2_3:-46007176 | Msa0294240:CDS |
| GCAAGAGTGTTGAAACTCAT+TGG | 0.462379 | 2_3:+46007299 | None:intergenic |
| TTAGCTATCTCCATCACATA+AGG | 0.467099 | 2_3:+46007407 | None:intergenic |
| TCACAACAAATCACAAAGAC+AGG | 0.471357 | 2_3:-46006428 | Msa0294240:CDS |
| AAACGCGGTTACTTGTTGTA+TGG | 0.474020 | 2_3:-46007185 | Msa0294240:CDS |
| ATAGAAGAACCGGGAAAGCT+TGG | 0.478091 | 2_3:-46007208 | Msa0294240:CDS |
| AGCAAAGAAGAACAAGATCT+AGG | 0.484846 | 2_3:-46006123 | Msa0294240:CDS |
| CAATTGATGAAGAGCTTCAA+AGG | 0.486235 | 2_3:-46007277 | Msa0294240:CDS |
| ATAGTCATTGAAGAATTTCA+AGG | 0.496242 | 2_3:-46007737 | Msa0294240:CDS |
| GTCTAGCTTGATTGCAGCCA+TGG | 0.496694 | 2_3:-46007144 | Msa0294240:CDS |
| AAGCTAGACTTCCCAGTACC+AGG | 0.497146 | 2_3:+46007158 | None:intergenic |
| GGACTATTGAATGCAGTAGA+TGG | 0.497808 | 2_3:-46006489 | Msa0294240:CDS |
| CCAAGCCAAGAAAATGGTCC+AGG | 0.508568 | 2_3:-46006169 | Msa0294240:CDS |
| GATCTAGGCAGAGAAAATAT+AGG | 0.509105 | 2_3:-46006108 | Msa0294240:CDS |
| CAACTATGATATCTATGACT+TGG | 0.513130 | 2_3:-46007111 | Msa0294240:CDS |
| ATTTGCTTGTCCATTCTACC+AGG | 0.513687 | 2_3:+46006384 | None:intergenic |
| AGTTCGCATTAGCGCAATTG+AGG | 0.515687 | 2_3:+46007850 | None:intergenic |
| TTCATATTTGCCTTATGTGA+TGG | 0.523892 | 2_3:-46007417 | Msa0294240:CDS |
| TGTATGGTCCTCCTGGTACT+GGG | 0.528478 | 2_3:-46007169 | Msa0294240:CDS |
| AATTGATGAAGAGCTTCAAA+GGG | 0.533769 | 2_3:-46007276 | Msa0294240:CDS |
| TCTGTTAAGACCTGGTAGAA+TGG | 0.545715 | 2_3:-46006394 | Msa0294240:CDS |
| CTACCAGGTCTTAACAGAGC+AGG | 0.546075 | 2_3:+46006399 | None:intergenic |
| TATCACAAGTATAGAACGGT+TGG | 0.555140 | 2_3:+46007034 | None:intergenic |
| ACAAATTAAACAAGGAATTG+TGG | 0.559399 | 2_3:-46007384 | Msa0294240:CDS |
| AAGAATTCGACATTATGATA+GGG | 0.568700 | 2_3:-46007513 | Msa0294240:CDS |
| ACTCAAATGAATATAATCGT+TGG | 0.570247 | 2_3:-46007349 | Msa0294240:CDS |
| ACATTATGATAGGGACTCCT+CGG | 0.578511 | 2_3:-46007504 | Msa0294240:CDS |
| CTTGGATCTCACTAATGTTG+GGG | 0.595649 | 2_3:-46007093 | Msa0294240:CDS |
| GATCCTGCTCTGTTAAGACC+TGG | 0.601081 | 2_3:-46006402 | Msa0294240:CDS |
| GTTCATGTTCAGTAATGCAA+AGG | 0.603050 | 2_3:+46006310 | None:intergenic |
| TAGTCATTGAAGAATTTCAA+GGG | 0.606257 | 2_3:-46007736 | Msa0294240:CDS |
| GAGTGTTGAAACTCATTGGA+TGG | 0.615289 | 2_3:+46007303 | None:intergenic |
| ACCGGGAAAGCTTGGAAACG+CGG | 0.621197 | 2_3:-46007200 | Msa0294240:CDS |
| TCTTATTTCTGACACAGCCG+AGG | 0.630279 | 2_3:+46007487 | None:intergenic |
| CCTCTATCACAAGTATAGAA+CGG | 0.641804 | 2_3:+46007030 | None:intergenic |
| TACTCCAGCTGAAATTGCAG+AGG | 0.647686 | 2_3:-46006247 | Msa0294240:CDS |
| ATAGTTGAGATAGTTAGCCA+TGG | 0.661661 | 2_3:+46007127 | None:intergenic |
| GATGGTCTTTGGTCATGCTG+TGG | 0.668698 | 2_3:-46006471 | Msa0294240:CDS |
| ACAAAGTTTAGGACTTCACG+AGG | 0.668909 | 2_3:+46007809 | None:intergenic |
| AATTGCAGAGGAGTTAACAA+AGG | 0.672960 | 2_3:-46006235 | Msa0294240:CDS |
| ATAGCTAAACAAATTAAACA+AGG | 0.702104 | 2_3:-46007392 | Msa0294240:CDS |
| TCTTTGGTCATGCTGTGGAG+AGG | 0.703389 | 2_3:-46006466 | Msa0294240:CDS |
| CTAGACTTCCCAGTACCAGG+AGG | 0.750100 | 2_3:+46007161 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTAGCTGAAAAAATT+TGG | - | chr2_3:46007243-46007262 | Msa0294240:CDS | 15.0% |
| !! | AATATTTAGCTGAAAAAATT+TGG | - | chr2_3:46007243-46007262 | Msa0294240:CDS | 15.0% |
| !! | ATAGCTAAACAAATTAAACA+AGG | - | chr2_3:46006608-46006627 | Msa0294240:intron | 20.0% |
| !!! | AAAGAATTTTATAGAAGAAC+CGG | - | chr2_3:46006782-46006801 | Msa0294240:intron | 20.0% |
| !! | TCTTTCAAATAATTACAGTT+TGG | + | chr2_3:46007116-46007135 | None:intergenic | 20.0% |
| !!! | ATTAGTTTAAAATAGTTGAC+AGG | + | chr2_3:46007456-46007475 | None:intergenic | 20.0% |
| !! | ATAGCTAAACAAATTAAACA+AGG | - | chr2_3:46006608-46006627 | Msa0294240:intron | 20.0% |
| !!! | AAAGAATTTTATAGAAGAAC+CGG | - | chr2_3:46006782-46006801 | Msa0294240:intron | 20.0% |
| !! | TCTTTCAAATAATTACAGTT+TGG | + | chr2_3:46007116-46007135 | None:intergenic | 20.0% |
| !!! | ATTAGTTTAAAATAGTTGAC+AGG | + | chr2_3:46007456-46007475 | None:intergenic | 20.0% |
| ! | TTGAAATTCTTCAATGACTA+TGG | + | chr2_3:46006264-46006283 | None:intergenic | 25.0% |
| ! | ATAGTCATTGAAGAATTTCA+AGG | - | chr2_3:46006263-46006282 | Msa0294240:CDS | 25.0% |
| ! | TAGTCATTGAAGAATTTCAA+GGG | - | chr2_3:46006264-46006283 | Msa0294240:CDS | 25.0% |
| !! | CTTTTTATGTTCCTTAGATT+TGG | + | chr2_3:46006372-46006391 | None:intergenic | 25.0% |
| ! | AAGAATTCGACATTATGATA+GGG | - | chr2_3:46006487-46006506 | Msa0294240:CDS | 25.0% |
| ! | ACAAATTAAACAAGGAATTG+TGG | - | chr2_3:46006616-46006635 | Msa0294240:intron | 25.0% |
| ! | ACTCAAATGAATATAATCGT+TGG | - | chr2_3:46006651-46006670 | Msa0294240:intron | 25.0% |
| ! | AAGGGAAATTAAGAATGATT+TGG | - | chr2_3:46006742-46006761 | Msa0294240:intron | 25.0% |
| !! | AAGAATTTTATAGAAGAACC+GGG | - | chr2_3:46006783-46006802 | Msa0294240:intron | 25.0% |
| ! | ATGAAGAAGTTGTTCATAAT+GGG | - | chr2_3:46007032-46007051 | Msa0294240:CDS | 25.0% |
| ! | TAAGTCATGTTGTTAACAAT+AGG | + | chr2_3:46007207-46007226 | None:intergenic | 25.0% |
| !!! | CTTTTCTGCTTTTAAGAAAT+TGG | - | chr2_3:46007657-46007676 | Msa0294240:CDS | 25.0% |
| ! | TTGAAATTCTTCAATGACTA+TGG | + | chr2_3:46006264-46006283 | None:intergenic | 25.0% |
| ! | ATAGTCATTGAAGAATTTCA+AGG | - | chr2_3:46006263-46006282 | Msa0294240:CDS | 25.0% |
| ! | TAGTCATTGAAGAATTTCAA+GGG | - | chr2_3:46006264-46006283 | Msa0294240:CDS | 25.0% |
| !! | CTTTTTATGTTCCTTAGATT+TGG | + | chr2_3:46006372-46006391 | None:intergenic | 25.0% |
| ! | AAGAATTCGACATTATGATA+GGG | - | chr2_3:46006487-46006506 | Msa0294240:CDS | 25.0% |
| ! | ACAAATTAAACAAGGAATTG+TGG | - | chr2_3:46006616-46006635 | Msa0294240:intron | 25.0% |
| ! | ACTCAAATGAATATAATCGT+TGG | - | chr2_3:46006651-46006670 | Msa0294240:intron | 25.0% |
| ! | AAGGGAAATTAAGAATGATT+TGG | - | chr2_3:46006742-46006761 | Msa0294240:intron | 25.0% |
| !! | AAGAATTTTATAGAAGAACC+GGG | - | chr2_3:46006783-46006802 | Msa0294240:intron | 25.0% |
| ! | ATGAAGAAGTTGTTCATAAT+GGG | - | chr2_3:46007032-46007051 | Msa0294240:CDS | 25.0% |
| ! | TAAGTCATGTTGTTAACAAT+AGG | + | chr2_3:46007207-46007226 | None:intergenic | 25.0% |
| !!! | CTTTTCTGCTTTTAAGAAAT+TGG | - | chr2_3:46007657-46007676 | Msa0294240:CDS | 25.0% |
| AGTCCTAAACTTTGTTCAAT+CGG | - | chr2_3:46006199-46006218 | Msa0294240:CDS | 30.0% | |
| AGTTAAAGCAACCAAATCTA+AGG | - | chr2_3:46006358-46006377 | Msa0294240:CDS | 30.0% | |
| CAAGAATTCGACATTATGAT+AGG | - | chr2_3:46006486-46006505 | Msa0294240:CDS | 30.0% | |
| TTCATATTTGCCTTATGTGA+TGG | - | chr2_3:46006583-46006602 | Msa0294240:intron | 30.0% | |
| ATTGGATGGTTGAACTTAAT+AGG | + | chr2_3:46006686-46006705 | None:intergenic | 30.0% | |
| AATTGATGAAGAGCTTCAAA+GGG | - | chr2_3:46006724-46006743 | Msa0294240:intron | 30.0% | |
| CAACTATGATATCTATGACT+TGG | - | chr2_3:46006889-46006908 | Msa0294240:intron | 30.0% | |
| ! | TTCTCGGTTTTGCAATTTTA+CGG | + | chr2_3:46007008-46007027 | None:intergenic | 30.0% |
| GATGAAGAAGTTGTTCATAA+TGG | - | chr2_3:46007031-46007050 | Msa0294240:CDS | 30.0% | |
| !! | CTGAAAAAATTTGGTCTTGT+TGG | - | chr2_3:46007252-46007271 | Msa0294240:CDS | 30.0% |
| TATGATGTCTGTTCATATCA+TGG | - | chr2_3:46007393-46007412 | Msa0294240:CDS | 30.0% | |
| ATGATGTCTGTTCATATCAT+GGG | - | chr2_3:46007394-46007413 | Msa0294240:CDS | 30.0% | |
| ACAGGAACAAAAGAATATGT+TGG | + | chr2_3:46007438-46007457 | None:intergenic | 30.0% | |
| ! | TTTTCAACAGATGACACTTT+CGG | - | chr2_3:46007489-46007508 | Msa0294240:CDS | 30.0% |
| GAAAAGATTGAAGTTCTTCT+TGG | - | chr2_3:46007718-46007737 | Msa0294240:CDS | 30.0% | |
| AGTCCTAAACTTTGTTCAAT+CGG | - | chr2_3:46006199-46006218 | Msa0294240:CDS | 30.0% | |
| AGTTAAAGCAACCAAATCTA+AGG | - | chr2_3:46006358-46006377 | Msa0294240:CDS | 30.0% | |
| CAAGAATTCGACATTATGAT+AGG | - | chr2_3:46006486-46006505 | Msa0294240:CDS | 30.0% | |
| TTCATATTTGCCTTATGTGA+TGG | - | chr2_3:46006583-46006602 | Msa0294240:intron | 30.0% | |
| ATTGGATGGTTGAACTTAAT+AGG | + | chr2_3:46006686-46006705 | None:intergenic | 30.0% | |
| AATTGATGAAGAGCTTCAAA+GGG | - | chr2_3:46006724-46006743 | Msa0294240:intron | 30.0% | |
| CAACTATGATATCTATGACT+TGG | - | chr2_3:46006889-46006908 | Msa0294240:intron | 30.0% | |
| ! | TTCTCGGTTTTGCAATTTTA+CGG | + | chr2_3:46007008-46007027 | None:intergenic | 30.0% |
| GATGAAGAAGTTGTTCATAA+TGG | - | chr2_3:46007031-46007050 | Msa0294240:CDS | 30.0% | |
| !! | CTGAAAAAATTTGGTCTTGT+TGG | - | chr2_3:46007252-46007271 | Msa0294240:CDS | 30.0% |
| TATGATGTCTGTTCATATCA+TGG | - | chr2_3:46007393-46007412 | Msa0294240:CDS | 30.0% | |
| ATGATGTCTGTTCATATCAT+GGG | - | chr2_3:46007394-46007413 | Msa0294240:CDS | 30.0% | |
| ACAGGAACAAAAGAATATGT+TGG | + | chr2_3:46007438-46007457 | None:intergenic | 30.0% | |
| ! | TTTTCAACAGATGACACTTT+CGG | - | chr2_3:46007489-46007508 | Msa0294240:CDS | 30.0% |
| GAAAAGATTGAAGTTCTTCT+TGG | - | chr2_3:46007718-46007737 | Msa0294240:CDS | 30.0% | |
| GTCCTAAACTTTGTTCAATC+GGG | - | chr2_3:46006200-46006219 | Msa0294240:CDS | 35.0% | |
| CGTTGAATTGGCAAAAAAGA+TGG | + | chr2_3:46006232-46006251 | None:intergenic | 35.0% | |
| ! | GACAAGAAACCAAGTTTTTG+AGG | - | chr2_3:46006289-46006308 | Msa0294240:CDS | 35.0% |
| ! | AGTTGCTTTAGTTCCTAGAT+AGG | + | chr2_3:46006324-46006343 | None:intergenic | 35.0% |
| !! | GAAGTGAGTGATGTTTTTGA+AGG | - | chr2_3:46006419-46006438 | Msa0294240:CDS | 35.0% |
| !! | TTGAAGGTGTTAGTGTAAAG+TGG | - | chr2_3:46006435-46006454 | Msa0294240:CDS | 35.0% |
| TTAGCTATCTCCATCACATA+AGG | + | chr2_3:46006596-46006615 | None:intergenic | 35.0% | |
| CAATTGATGAAGAGCTTCAA+AGG | - | chr2_3:46006723-46006742 | Msa0294240:intron | 35.0% | |
| ATAGTTGAGATAGTTAGCCA+TGG | + | chr2_3:46006876-46006895 | None:intergenic | 35.0% | |
| ACTTGGATCTCACTAATGTT+GGG | - | chr2_3:46006906-46006925 | Msa0294240:intron | 35.0% | |
| TATCACAAGTATAGAACGGT+TGG | + | chr2_3:46006969-46006988 | None:intergenic | 35.0% | |
| CCTCTATCACAAGTATAGAA+CGG | + | chr2_3:46006973-46006992 | None:intergenic | 35.0% | |
| CAACTTCTTCATCTTCTTCT+CGG | + | chr2_3:46007024-46007043 | None:intergenic | 35.0% | |
| !! | TGTTCATAATGGGCACAATA+AGG | - | chr2_3:46007042-46007061 | Msa0294240:CDS | 35.0% |
| GAATTTGACGTACATGAATC+TGG | - | chr2_3:46007134-46007153 | Msa0294240:CDS | 35.0% | |
| AATCATCTGCATGATTTAGC+CGG | - | chr2_3:46007170-46007189 | Msa0294240:CDS | 35.0% | |
| CTAAATATTATGTCCTCGTG+CGG | + | chr2_3:46007232-46007251 | None:intergenic | 35.0% | |
| ! | TGGTAAGATTTTGTCGACAA+TGG | - | chr2_3:46007272-46007291 | Msa0294240:CDS | 35.0% |
| ! | AAGATTTTGTCGACAATGGT+TGG | - | chr2_3:46007276-46007295 | Msa0294240:CDS | 35.0% |
| TGATGTCTGTTCATATCATG+GGG | - | chr2_3:46007395-46007414 | Msa0294240:CDS | 35.0% | |
| TTTCAACAGATGACACTTTC+GGG | - | chr2_3:46007490-46007509 | Msa0294240:CDS | 35.0% | |
| TCACAACAAATCACAAAGAC+AGG | - | chr2_3:46007572-46007591 | Msa0294240:CDS | 35.0% | |
| GTTCATGTTCAGTAATGCAA+AGG | + | chr2_3:46007693-46007712 | None:intergenic | 35.0% | |
| AATTGCAGAGGAGTTAACAA+AGG | - | chr2_3:46007765-46007784 | Msa0294240:CDS | 35.0% | |
| AGCAAAGAAGAACAAGATCT+AGG | - | chr2_3:46007877-46007896 | Msa0294240:CDS | 35.0% | |
| GATCTAGGCAGAGAAAATAT+AGG | - | chr2_3:46007892-46007911 | Msa0294240:CDS | 35.0% | |
| GTCCTAAACTTTGTTCAATC+GGG | - | chr2_3:46006200-46006219 | Msa0294240:CDS | 35.0% | |
| CGTTGAATTGGCAAAAAAGA+TGG | + | chr2_3:46006232-46006251 | None:intergenic | 35.0% | |
| ! | GACAAGAAACCAAGTTTTTG+AGG | - | chr2_3:46006289-46006308 | Msa0294240:CDS | 35.0% |
| ! | AGTTGCTTTAGTTCCTAGAT+AGG | + | chr2_3:46006324-46006343 | None:intergenic | 35.0% |
| !! | GAAGTGAGTGATGTTTTTGA+AGG | - | chr2_3:46006419-46006438 | Msa0294240:CDS | 35.0% |
| !! | TTGAAGGTGTTAGTGTAAAG+TGG | - | chr2_3:46006435-46006454 | Msa0294240:CDS | 35.0% |
| TTAGCTATCTCCATCACATA+AGG | + | chr2_3:46006596-46006615 | None:intergenic | 35.0% | |
| CAATTGATGAAGAGCTTCAA+AGG | - | chr2_3:46006723-46006742 | Msa0294240:intron | 35.0% | |
| ATAGTTGAGATAGTTAGCCA+TGG | + | chr2_3:46006876-46006895 | None:intergenic | 35.0% | |
| ACTTGGATCTCACTAATGTT+GGG | - | chr2_3:46006906-46006925 | Msa0294240:intron | 35.0% | |
| TATCACAAGTATAGAACGGT+TGG | + | chr2_3:46006969-46006988 | None:intergenic | 35.0% | |
| CCTCTATCACAAGTATAGAA+CGG | + | chr2_3:46006973-46006992 | None:intergenic | 35.0% | |
| CAACTTCTTCATCTTCTTCT+CGG | + | chr2_3:46007024-46007043 | None:intergenic | 35.0% | |
| !! | TGTTCATAATGGGCACAATA+AGG | - | chr2_3:46007042-46007061 | Msa0294240:CDS | 35.0% |
| GAATTTGACGTACATGAATC+TGG | - | chr2_3:46007134-46007153 | Msa0294240:CDS | 35.0% | |
| AATCATCTGCATGATTTAGC+CGG | - | chr2_3:46007170-46007189 | Msa0294240:CDS | 35.0% | |
| CTAAATATTATGTCCTCGTG+CGG | + | chr2_3:46007232-46007251 | None:intergenic | 35.0% | |
| ! | TGGTAAGATTTTGTCGACAA+TGG | - | chr2_3:46007272-46007291 | Msa0294240:CDS | 35.0% |
| ! | AAGATTTTGTCGACAATGGT+TGG | - | chr2_3:46007276-46007295 | Msa0294240:CDS | 35.0% |
| TGATGTCTGTTCATATCATG+GGG | - | chr2_3:46007395-46007414 | Msa0294240:CDS | 35.0% | |
| TTTCAACAGATGACACTTTC+GGG | - | chr2_3:46007490-46007509 | Msa0294240:CDS | 35.0% | |
| TCACAACAAATCACAAAGAC+AGG | - | chr2_3:46007572-46007591 | Msa0294240:CDS | 35.0% | |
| GTTCATGTTCAGTAATGCAA+AGG | + | chr2_3:46007693-46007712 | None:intergenic | 35.0% | |
| AATTGCAGAGGAGTTAACAA+AGG | - | chr2_3:46007765-46007784 | Msa0294240:CDS | 35.0% | |
| AGCAAAGAAGAACAAGATCT+AGG | - | chr2_3:46007877-46007896 | Msa0294240:CDS | 35.0% | |
| GATCTAGGCAGAGAAAATAT+AGG | - | chr2_3:46007892-46007911 | Msa0294240:CDS | 35.0% | |
| ! | ACAAAGTTTAGGACTTCACG+AGG | + | chr2_3:46006194-46006213 | None:intergenic | 40.0% |
| GTCCCGATTGAACAAAGTTT+AGG | + | chr2_3:46006205-46006224 | None:intergenic | 40.0% | |
| TGGTGAATTGTGCGTTGAAT+TGG | + | chr2_3:46006244-46006263 | None:intergenic | 40.0% | |
| ACATTATGATAGGGACTCCT+CGG | - | chr2_3:46006496-46006515 | Msa0294240:CDS | 40.0% | |
| !! | GAGTGTTGAAACTCATTGGA+TGG | + | chr2_3:46006700-46006719 | None:intergenic | 40.0% |
| !! | GCAAGAGTGTTGAAACTCAT+TGG | + | chr2_3:46006704-46006723 | None:intergenic | 40.0% |
| !! | AAACGCGGTTACTTGTTGTA+TGG | - | chr2_3:46006815-46006834 | Msa0294240:intron | 40.0% |
| GACTTGGATCTCACTAATGT+TGG | - | chr2_3:46006905-46006924 | Msa0294240:intron | 40.0% | |
| CTTGGATCTCACTAATGTTG+GGG | - | chr2_3:46006907-46006926 | Msa0294240:intron | 40.0% | |
| CCGTTCTATACTTGTGATAG+AGG | - | chr2_3:46006970-46006989 | Msa0294240:CDS | 40.0% | |
| ! | ATGATTTAGCCGGCGAATTT+TGG | - | chr2_3:46007180-46007199 | Msa0294240:CDS | 40.0% |
| ACAATAGGACCAAAATTCGC+CGG | + | chr2_3:46007192-46007211 | None:intergenic | 40.0% | |
| CAAACTATGTACATACGACG+AGG | - | chr2_3:46007328-46007347 | Msa0294240:CDS | 40.0% | |
| GGACTATTGAATGCAGTAGA+TGG | - | chr2_3:46007511-46007530 | Msa0294240:CDS | 40.0% | |
| TGAATGCAGTAGATGGTCTT+TGG | - | chr2_3:46007518-46007537 | Msa0294240:CDS | 40.0% | |
| TCTGTTAAGACCTGGTAGAA+TGG | - | chr2_3:46007606-46007625 | Msa0294240:CDS | 40.0% | |
| ATTTGCTTGTCCATTCTACC+AGG | + | chr2_3:46007619-46007638 | None:intergenic | 40.0% | |
| GGAATTTGATAAGGTCTTGC+AGG | + | chr2_3:46007810-46007829 | None:intergenic | 40.0% | |
| ! | TGGCTTGGAGGAATTTGATA+AGG | + | chr2_3:46007819-46007838 | None:intergenic | 40.0% |
| ATTCCTCCAAGCCAAGAAAA+TGG | - | chr2_3:46007825-46007844 | Msa0294240:CDS | 40.0% | |
| ! | ACAAAGTTTAGGACTTCACG+AGG | + | chr2_3:46006194-46006213 | None:intergenic | 40.0% |
| GTCCCGATTGAACAAAGTTT+AGG | + | chr2_3:46006205-46006224 | None:intergenic | 40.0% | |
| TGGTGAATTGTGCGTTGAAT+TGG | + | chr2_3:46006244-46006263 | None:intergenic | 40.0% | |
| ACATTATGATAGGGACTCCT+CGG | - | chr2_3:46006496-46006515 | Msa0294240:CDS | 40.0% | |
| !! | GAGTGTTGAAACTCATTGGA+TGG | + | chr2_3:46006700-46006719 | None:intergenic | 40.0% |
| !! | GCAAGAGTGTTGAAACTCAT+TGG | + | chr2_3:46006704-46006723 | None:intergenic | 40.0% |
| !! | AAACGCGGTTACTTGTTGTA+TGG | - | chr2_3:46006815-46006834 | Msa0294240:intron | 40.0% |
| GACTTGGATCTCACTAATGT+TGG | - | chr2_3:46006905-46006924 | Msa0294240:intron | 40.0% | |
| CTTGGATCTCACTAATGTTG+GGG | - | chr2_3:46006907-46006926 | Msa0294240:intron | 40.0% | |
| CCGTTCTATACTTGTGATAG+AGG | - | chr2_3:46006970-46006989 | Msa0294240:CDS | 40.0% | |
| ! | ATGATTTAGCCGGCGAATTT+TGG | - | chr2_3:46007180-46007199 | Msa0294240:CDS | 40.0% |
| ACAATAGGACCAAAATTCGC+CGG | + | chr2_3:46007192-46007211 | None:intergenic | 40.0% | |
| CAAACTATGTACATACGACG+AGG | - | chr2_3:46007328-46007347 | Msa0294240:CDS | 40.0% | |
| GGACTATTGAATGCAGTAGA+TGG | - | chr2_3:46007511-46007530 | Msa0294240:CDS | 40.0% | |
| TGAATGCAGTAGATGGTCTT+TGG | - | chr2_3:46007518-46007537 | Msa0294240:CDS | 40.0% | |
| TCTGTTAAGACCTGGTAGAA+TGG | - | chr2_3:46007606-46007625 | Msa0294240:CDS | 40.0% | |
| ATTTGCTTGTCCATTCTACC+AGG | + | chr2_3:46007619-46007638 | None:intergenic | 40.0% | |
| GGAATTTGATAAGGTCTTGC+AGG | + | chr2_3:46007810-46007829 | None:intergenic | 40.0% | |
| ! | TGGCTTGGAGGAATTTGATA+AGG | + | chr2_3:46007819-46007838 | None:intergenic | 40.0% |
| ATTCCTCCAAGCCAAGAAAA+TGG | - | chr2_3:46007825-46007844 | Msa0294240:CDS | 40.0% | |
| !! | CAAGCCAGTTTTATCTGCAG+TGG | - | chr2_3:46006127-46006146 | Msa0294240:CDS | 45.0% |
| AGTTCGCATTAGCGCAATTG+AGG | + | chr2_3:46006153-46006172 | None:intergenic | 45.0% | |
| CTTCTGCTGCCTCAAAAACT+TGG | + | chr2_3:46006301-46006320 | None:intergenic | 45.0% | |
| !! | TCTTATTTCTGACACAGCCG+AGG | + | chr2_3:46006516-46006535 | None:intergenic | 45.0% |
| ATAGAAGAACCGGGAAAGCT+TGG | - | chr2_3:46006792-46006811 | Msa0294240:intron | 45.0% | |
| !! | TACTTGTTGTATGGTCCTCC+TGG | - | chr2_3:46006824-46006843 | Msa0294240:intron | 45.0% |
| AACATGACTTATACCGCACG+AGG | - | chr2_3:46007216-46007235 | Msa0294240:CDS | 45.0% | |
| ! | TCGACAATGGTTGGTCAAGT+TGG | - | chr2_3:46007285-46007304 | Msa0294240:CDS | 45.0% |
| TGTACATACGACGAGGTCAT+AGG | - | chr2_3:46007335-46007354 | Msa0294240:CDS | 45.0% | |
| TACTCCAGCTGAAATTGCAG+AGG | - | chr2_3:46007753-46007772 | Msa0294240:CDS | 45.0% | |
| AACTCCTCTGCAATTTCAGC+TGG | + | chr2_3:46007760-46007779 | None:intergenic | 45.0% | |
| ! | CTCTTCCTGGACCATTTTCT+TGG | + | chr2_3:46007839-46007858 | None:intergenic | 45.0% |
| CTTCTCTCTTAGTCTCTTCC+TGG | + | chr2_3:46007852-46007871 | None:intergenic | 45.0% | |
| !! | CAAGCCAGTTTTATCTGCAG+TGG | - | chr2_3:46006127-46006146 | Msa0294240:CDS | 45.0% |
| AGTTCGCATTAGCGCAATTG+AGG | + | chr2_3:46006153-46006172 | None:intergenic | 45.0% | |
| CTTCTGCTGCCTCAAAAACT+TGG | + | chr2_3:46006301-46006320 | None:intergenic | 45.0% | |
| !! | TCTTATTTCTGACACAGCCG+AGG | + | chr2_3:46006516-46006535 | None:intergenic | 45.0% |
| ATAGAAGAACCGGGAAAGCT+TGG | - | chr2_3:46006792-46006811 | Msa0294240:intron | 45.0% | |
| !! | TACTTGTTGTATGGTCCTCC+TGG | - | chr2_3:46006824-46006843 | Msa0294240:intron | 45.0% |
| AACATGACTTATACCGCACG+AGG | - | chr2_3:46007216-46007235 | Msa0294240:CDS | 45.0% | |
| ! | TCGACAATGGTTGGTCAAGT+TGG | - | chr2_3:46007285-46007304 | Msa0294240:CDS | 45.0% |
| TGTACATACGACGAGGTCAT+AGG | - | chr2_3:46007335-46007354 | Msa0294240:CDS | 45.0% | |
| TACTCCAGCTGAAATTGCAG+AGG | - | chr2_3:46007753-46007772 | Msa0294240:CDS | 45.0% | |
| AACTCCTCTGCAATTTCAGC+TGG | + | chr2_3:46007760-46007779 | None:intergenic | 45.0% | |
| ! | CTCTTCCTGGACCATTTTCT+TGG | + | chr2_3:46007839-46007858 | None:intergenic | 45.0% |
| CTTCTCTCTTAGTCTCTTCC+TGG | + | chr2_3:46007852-46007871 | None:intergenic | 45.0% | |
| GAGGCCACTGCAGATAAAAC+TGG | + | chr2_3:46006134-46006153 | None:intergenic | 50.0% | |
| TTGTATGGTCCTCCTGGTAC+TGG | - | chr2_3:46006830-46006849 | Msa0294240:intron | 50.0% | |
| TGTATGGTCCTCCTGGTACT+GGG | - | chr2_3:46006831-46006850 | Msa0294240:intron | 50.0% | |
| AAGCTAGACTTCCCAGTACC+AGG | + | chr2_3:46006845-46006864 | None:intergenic | 50.0% | |
| ! | GTCTAGCTTGATTGCAGCCA+TGG | - | chr2_3:46006856-46006875 | Msa0294240:intron | 50.0% |
| GATGGTCTTTGGTCATGCTG+TGG | - | chr2_3:46007529-46007548 | Msa0294240:CDS | 50.0% | |
| TCTTTGGTCATGCTGTGGAG+AGG | - | chr2_3:46007534-46007553 | Msa0294240:CDS | 50.0% | |
| GATCCTGCTCTGTTAAGACC+TGG | - | chr2_3:46007598-46007617 | Msa0294240:CDS | 50.0% | |
| CTACCAGGTCTTAACAGAGC+AGG | + | chr2_3:46007604-46007623 | None:intergenic | 50.0% | |
| !!! | GGACCATTTTCTTGGCTTGG+AGG | + | chr2_3:46007831-46007850 | None:intergenic | 50.0% |
| ! | CCTGGACCATTTTCTTGGCT+TGG | + | chr2_3:46007834-46007853 | None:intergenic | 50.0% |
| CCAAGCCAAGAAAATGGTCC+AGG | - | chr2_3:46007831-46007850 | Msa0294240:CDS | 50.0% | |
| GAGGCCACTGCAGATAAAAC+TGG | + | chr2_3:46006134-46006153 | None:intergenic | 50.0% | |
| TTGTATGGTCCTCCTGGTAC+TGG | - | chr2_3:46006830-46006849 | Msa0294240:intron | 50.0% | |
| TGTATGGTCCTCCTGGTACT+GGG | - | chr2_3:46006831-46006850 | Msa0294240:intron | 50.0% | |
| AAGCTAGACTTCCCAGTACC+AGG | + | chr2_3:46006845-46006864 | None:intergenic | 50.0% | |
| ! | GTCTAGCTTGATTGCAGCCA+TGG | - | chr2_3:46006856-46006875 | Msa0294240:intron | 50.0% |
| GATGGTCTTTGGTCATGCTG+TGG | - | chr2_3:46007529-46007548 | Msa0294240:CDS | 50.0% | |
| TCTTTGGTCATGCTGTGGAG+AGG | - | chr2_3:46007534-46007553 | Msa0294240:CDS | 50.0% | |
| GATCCTGCTCTGTTAAGACC+TGG | - | chr2_3:46007598-46007617 | Msa0294240:CDS | 50.0% | |
| CTACCAGGTCTTAACAGAGC+AGG | + | chr2_3:46007604-46007623 | None:intergenic | 50.0% | |
| !!! | GGACCATTTTCTTGGCTTGG+AGG | + | chr2_3:46007831-46007850 | None:intergenic | 50.0% |
| ! | CCTGGACCATTTTCTTGGCT+TGG | + | chr2_3:46007834-46007853 | None:intergenic | 50.0% |
| CCAAGCCAAGAAAATGGTCC+AGG | - | chr2_3:46007831-46007850 | Msa0294240:CDS | 50.0% | |
| GAGGCAGCAGAAGCCTATCT+AGG | - | chr2_3:46006308-46006327 | Msa0294240:CDS | 55.0% | |
| ACCGGGAAAGCTTGGAAACG+CGG | - | chr2_3:46006800-46006819 | Msa0294240:intron | 55.0% | |
| ACCGCGTTTCCAAGCTTTCC+CGG | + | chr2_3:46006804-46006823 | None:intergenic | 55.0% | |
| CTAGACTTCCCAGTACCAGG+AGG | + | chr2_3:46006842-46006861 | None:intergenic | 55.0% | |
| GAGGCAGCAGAAGCCTATCT+AGG | - | chr2_3:46006308-46006327 | Msa0294240:CDS | 55.0% | |
| ACCGGGAAAGCTTGGAAACG+CGG | - | chr2_3:46006800-46006819 | Msa0294240:intron | 55.0% | |
| ACCGCGTTTCCAAGCTTTCC+CGG | + | chr2_3:46006804-46006823 | None:intergenic | 55.0% | |
| CTAGACTTCCCAGTACCAGG+AGG | + | chr2_3:46006842-46006861 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 46006095 | 46007927 | 46006095 | ID=Msa0294240;Name=Msa0294240 |
| chr2_3 | mRNA | 46006095 | 46007927 | 46006095 | ID=Msa0294240-mRNA-1;Parent=Msa0294240;Name=Msa0294240-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|1|0|1|1|1|2|0|465 |
| chr2_3 | exon | 46006959 | 46007927 | 46006959 | ID=Msa0294240-mRNA-1:exon:14406;Parent=Msa0294240-mRNA-1 |
| chr2_3 | exon | 46006095 | 46006523 | 46006095 | ID=Msa0294240-mRNA-1:exon:14405;Parent=Msa0294240-mRNA-1 |
| chr2_3 | CDS | 46006959 | 46007927 | 46006959 | ID=Msa0294240-mRNA-1:cds;Parent=Msa0294240-mRNA-1 |
| chr2_3 | CDS | 46006095 | 46006523 | 46006095 | ID=Msa0294240-mRNA-1:cds;Parent=Msa0294240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
