Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215470 | XP_013464615.3 | 79.552 | 357 | 13 | 2 | 1 | 297 | 355 | 711 | 0.0 | 551 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215470 | sp|Q5QNI2|NCL1_ORYSJ | 33.642 | 324 | 141 | 6 | 46 | 296 | 261 | 583 | 2.95e-53 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215470 | A0A396JED7 | 79.552 | 357 | 13 | 2 | 1 | 297 | 355 | 711 | 0.0 | 551 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0215470 | Msa0626680 | 0.806192 | 9.267587e-50 | -8.615850e-47 |
| Msa0215470 | Msa1291350 | 0.804320 | 2.285730e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215470 | MtrunA17_Chr2g0316541 | 79.552 | 357 | 13 | 2 | 1 | 297 | 355 | 711 | 0.0 | 551 |
| Msa0215470 | MtrunA17_Chr2g0316541 | 34.646 | 127 | 71 | 4 | 46 | 165 | 264 | 385 | 1.55e-12 | 67.8 |
| Msa0215470 | MtrunA17_Chr2g0316531 | 70.391 | 358 | 45 | 3 | 1 | 297 | 354 | 711 | 3.27e-161 | 465 |
| Msa0215470 | MtrunA17_Chr2g0316431 | 34.985 | 323 | 131 | 7 | 46 | 290 | 252 | 573 | 5.66e-49 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215470 | AT1G53210.1 | 33.028 | 327 | 134 | 6 | 46 | 290 | 255 | 578 | 2.15e-40 | 148 |
| Msa0215470 | AT1G29020.2 | 26.159 | 302 | 146 | 7 | 55 | 288 | 289 | 581 | 1.49e-26 | 109 |
| Msa0215470 | AT1G29020.1 | 26.159 | 302 | 146 | 7 | 55 | 288 | 256 | 548 | 1.70e-26 | 109 |
| Msa0215470 | AT2G34030.1 | 25.240 | 313 | 166 | 8 | 50 | 295 | 253 | 564 | 9.88e-21 | 92.4 |
| Msa0215470 | AT2G34020.1 | 23.123 | 333 | 168 | 7 | 42 | 289 | 273 | 602 | 1.60e-19 | 89.0 |
| Msa0215470 | AT1G29025.1 | 25.850 | 294 | 146 | 6 | 65 | 289 | 280 | 570 | 7.21e-19 | 87.0 |
| Msa0215470 | AT2G34020.2 | 21.585 | 366 | 166 | 8 | 42 | 289 | 273 | 635 | 1.72e-15 | 77.0 |
Find 58 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAAGAACATCTTATTTC+TGG | 0.120665 | 2_1:-60744630 | Msa0215470:CDS |
| TTTGGGTCAATGCAGATTTA+TGG | 0.190114 | 2_1:-60742434 | Msa0215470:intron |
| ATTTGTTCATCTCTAATATC+TGG | 0.196074 | 2_1:+60746188 | None:intergenic |
| TTGTCTTGAAATCAAAATTA+AGG | 0.210816 | 2_1:+60742167 | None:intergenic |
| AAACGCTAGATGTGGTTTAT+TGG | 0.213020 | 2_1:-60742133 | Msa0215470:three_prime_UTR |
| ATTCTTCCTTGGTTATAATT+TGG | 0.231142 | 2_1:+60746129 | None:intergenic |
| TCCCATGTTGATTGAATTCA+TGG | 0.254108 | 2_1:+60746270 | None:intergenic |
| ACCAAGGAAGAATTTGTTAA+TGG | 0.262804 | 2_1:-60746119 | Msa0215470:CDS |
| GCAGTGAAGAAGATTAAATT+TGG | 0.288266 | 2_1:-60744345 | Msa0215470:CDS |
| GATGTAAGAGAGTTATTGTT+TGG | 0.291850 | 2_1:-60746227 | Msa0215470:five_prime_UTR |
| GTATCTAATATCATTGGTTA+TGG | 0.321573 | 2_1:-60742228 | Msa0215470:CDS |
| AAATATGAGCAGAATGTATC+AGG | 0.363258 | 2_1:-60746036 | Msa0215470:intron |
| GTGTTTATGAACAACATTCT+TGG | 0.370916 | 2_1:-60742407 | Msa0215470:CDS |
| AGTGAGAATGAATTTGTTGA+TGG | 0.383299 | 2_1:-60744255 | Msa0215470:intron |
| ATTAGATACAAGAGGTATGT+TGG | 0.398858 | 2_1:+60742242 | None:intergenic |
| TAAGCAAACAAAGCATGCTT+TGG | 0.399282 | 2_1:-60746081 | Msa0215470:CDS |
| CCTCTTGTATCTAATATCAT+TGG | 0.406295 | 2_1:-60742234 | Msa0215470:CDS |
| GGCAATTGTTTGTATTGTGA+TGG | 0.409059 | 2_1:-60742312 | Msa0215470:CDS |
| TAAGTCATGCTCAGAGTGAT+AGG | 0.413036 | 2_1:-60744602 | Msa0215470:CDS |
| TTTGTTCATCTCTAATATCT+GGG | 0.416900 | 2_1:+60746189 | None:intergenic |
| GCCATTAACAAATTCTTCCT+TGG | 0.431043 | 2_1:+60746118 | None:intergenic |
| GAACAACATTCTTGGCTTTG+TGG | 0.441869 | 2_1:-60742399 | Msa0215470:CDS |
| CAACCATGCAGTCACCCCTT+TGG | 0.444440 | 2_1:+60743563 | None:intergenic |
| TTTCTCGTGTGTTCAATCCA+TGG | 0.448512 | 2_1:+60744663 | None:intergenic |
| ATGTAAGAGAGTTATTGTTT+GGG | 0.457868 | 2_1:-60746226 | Msa0215470:five_prime_UTR |
| TGGAAGAGAAACATACCAAA+GGG | 0.466695 | 2_1:-60743578 | Msa0215470:CDS |
| ATGATGCAATAGGTTCTTTG+AGG | 0.469084 | 2_1:-60744418 | Msa0215470:intron |
| GCAATTGTTTGTATTGTGAT+GGG | 0.481583 | 2_1:-60742311 | Msa0215470:CDS |
| GCTATAGCATATGTGATGTT+GGG | 0.487166 | 2_1:-60743537 | Msa0215470:CDS |
| CGTTGGCATCAAGAACTTGA+AGG | 0.491266 | 2_1:+60744292 | None:intergenic |
| TTAGATACAAGAGGTATGTT+GGG | 0.494840 | 2_1:+60742243 | None:intergenic |
| ACTAATTTCATCGTCTCCGT+TGG | 0.498777 | 2_1:+60744275 | None:intergenic |
| CAAAGGGGTGACTGCATGGT+TGG | 0.508691 | 2_1:-60743562 | Msa0215470:CDS |
| AGCTATAGCATATGTGATGT+TGG | 0.514867 | 2_1:-60743538 | Msa0215470:CDS |
| CTGATAAAGATGCTATCAAA+AGG | 0.515493 | 2_1:-60744548 | Msa0215470:intron |
| CTTCAAGTTCTTGATGCCAA+CGG | 0.520093 | 2_1:-60744291 | Msa0215470:CDS |
| GGAAGATGTTGAGAAGGTAA+TGG | 0.527786 | 2_1:-60743598 | Msa0215470:intron |
| GGATGTCCACAGAGGAAAAG+TGG | 0.542719 | 2_1:+60742268 | None:intergenic |
| GGTAGGCTGCTCAAAGATGA+TGG | 0.545600 | 2_1:-60744576 | Msa0215470:CDS |
| AATAACTCTCTTACATCAGA+AGG | 0.555968 | 2_1:+60746233 | None:intergenic |
| ATACAAGAGGTATGTTGGGA+AGG | 0.556594 | 2_1:+60742247 | None:intergenic |
| TATATATGAGAGATATCACT+TGG | 0.563447 | 2_1:-60742361 | Msa0215470:CDS |
| TTCAGCTGATGTATTGGTGG+TGG | 0.569076 | 2_1:-60742333 | Msa0215470:CDS |
| ATACCAAAGGGGTGACTGCA+TGG | 0.572407 | 2_1:-60743566 | Msa0215470:CDS |
| TACCATGAATTCAATCAACA+TGG | 0.588906 | 2_1:-60746272 | Msa0215470:five_prime_UTR |
| AAGTCATGCTCAGAGTGATA+GGG | 0.591432 | 2_1:-60744601 | Msa0215470:CDS |
| GACATGGGAAGATGTTGAGA+AGG | 0.598738 | 2_1:-60743604 | Msa0215470:intron |
| CTCAGAGTGATAGGGTTGGT+AGG | 0.610925 | 2_1:-60744593 | Msa0215470:CDS |
| TAAATTTGGTACGACTGCAG+AGG | 0.613630 | 2_1:-60744331 | Msa0215470:CDS |
| ATGGAAGAGAAACATACCAA+AGG | 0.623874 | 2_1:-60743579 | Msa0215470:CDS |
| TGGTGACCAAATTATAACCA+AGG | 0.655954 | 2_1:-60746135 | Msa0215470:CDS |
| ACCATGAATTCAATCAACAT+GGG | 0.659613 | 2_1:-60746271 | Msa0215470:five_prime_UTR |
| CATGCTCAGAGTGATAGGGT+TGG | 0.663630 | 2_1:-60744597 | Msa0215470:CDS |
| AAAAGTGGAACGAAAACTAG+TGG | 0.676799 | 2_1:+60742283 | None:intergenic |
| CCAATGATATTAGATACAAG+AGG | 0.680585 | 2_1:+60742234 | None:intergenic |
| GGAAGAGAAACATACCAAAG+GGG | 0.717585 | 2_1:-60743577 | Msa0215470:CDS |
| ATATATGAGAGATATCACTT+GGG | 0.731670 | 2_1:-60742360 | Msa0215470:CDS |
| GTTGGGAAGGATGTCCACAG+AGG | 0.762076 | 2_1:+60742260 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTCAAAAAAATAATTTTTTT+TGG | + | chr2_1:60742559-60742578 | None:intergenic | 10.0% |
| !! | TAGCTAAATATTTATTATTA+GGG | + | chr2_1:60742611-60742630 | None:intergenic | 10.0% |
| !!! | TTTTATTAATAATAATTGTG+TGG | + | chr2_1:60742809-60742828 | None:intergenic | 10.0% |
| !! | GTTTAAAAAAAAATTATATG+TGG | - | chr2_1:60743397-60743416 | Msa0215470:intron | 10.0% |
| !!! | AAACTAAAATTGTTTTTAAT+TGG | - | chr2_1:60745553-60745572 | Msa0215470:intron | 10.0% |
| !! | AGCTAAATATTTATTATTAG+GGG | + | chr2_1:60742610-60742629 | None:intergenic | 15.0% |
| !! | GTAGCTAAATATTTATTATT+AGG | + | chr2_1:60742612-60742631 | None:intergenic | 15.0% |
| !!! | TTTTATCTTTATTTAACTTC+CGG | - | chr2_1:60742662-60742681 | Msa0215470:intron | 15.0% |
| !!! | TATTACTATTTATCTCTTTT+GGG | + | chr2_1:60742738-60742757 | None:intergenic | 15.0% |
| !!! | TTATTACTATTTATCTCTTT+TGG | + | chr2_1:60742739-60742758 | None:intergenic | 15.0% |
| !! | AAATTTGTGTTATACAAATT+AGG | - | chr2_1:60743125-60743144 | Msa0215470:intron | 15.0% |
| !! | TAAAACAATAAGTTTGAATT+GGG | + | chr2_1:60743680-60743699 | None:intergenic | 15.0% |
| !! | ATAAAACAATAAGTTTGAAT+TGG | + | chr2_1:60743681-60743700 | None:intergenic | 15.0% |
| !! | AAAATATGAGTTTATCAATT+CGG | + | chr2_1:60744158-60744177 | None:intergenic | 15.0% |
| !!! | ATAAACTCATATTTTAAACA+AGG | - | chr2_1:60744163-60744182 | Msa0215470:intron | 15.0% |
| !!! | TCATATTCAATTTTTACAAA+CGG | - | chr2_1:60744259-60744278 | Msa0215470:CDS | 15.0% |
| !!! | TTTAAATATACATGATTTTC+AGG | - | chr2_1:60744492-60744511 | Msa0215470:intron | 15.0% |
| !!! | TTTTCTATTATTTTTACCAA+CGG | - | chr2_1:60744733-60744752 | Msa0215470:intron | 15.0% |
| !!! | TATCATTTTTTAAATGTTAC+TGG | + | chr2_1:60745235-60745254 | None:intergenic | 15.0% |
| !! | AAGTTCTTAAAATTATCAAT+AGG | - | chr2_1:60745525-60745544 | Msa0215470:intron | 15.0% |
| !! | ACTAAAATTATAAACTATCA+AGG | + | chr2_1:60745581-60745600 | None:intergenic | 15.0% |
| !!! | CTAATTTTTTTTTCTTCATT+GGG | + | chr2_1:60745678-60745697 | None:intergenic | 15.0% |
| !!! | ACTAATTTTTTTTTCTTCAT+TGG | + | chr2_1:60745679-60745698 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAAATTAGTTCA+AGG | - | chr2_1:60745682-60745701 | Msa0215470:intron | 15.0% |
| !! | TAAACTAAAAAAACGTAATT+AGG | + | chr2_1:60745843-60745862 | None:intergenic | 15.0% |
| !! | TAAATACTTATGTAAAGATT+TGG | - | chr2_1:60745930-60745949 | Msa0215470:intron | 15.0% |
| !! | AAATACTTATGTAAAGATTT+GGG | - | chr2_1:60745931-60745950 | Msa0215470:intron | 15.0% |
| !!! | TTAAAAGTTTTTGACAAAGA+TGG | - | chr2_1:60742227-60742246 | Msa0215470:CDS | 20.0% |
| !!! | AATTATTTTTTTGAGTGAGT+AGG | - | chr2_1:60742564-60742583 | Msa0215470:intron | 20.0% |
| !! | TTCACTTAAAATAAAACTTG+GGG | + | chr2_1:60742634-60742653 | None:intergenic | 20.0% |
| !! | GTTCACTTAAAATAAAACTT+GGG | + | chr2_1:60742635-60742654 | None:intergenic | 20.0% |
| !! | AGTTCACTTAAAATAAAACT+TGG | + | chr2_1:60742636-60742655 | None:intergenic | 20.0% |
| !!! | TAAATAATTTGAAGTTCAAC+CGG | + | chr2_1:60742684-60742703 | None:intergenic | 20.0% |
| !! | TAGTTTATCTAATACAAAAG+TGG | - | chr2_1:60742765-60742784 | Msa0215470:intron | 20.0% |
| !! | AGTTTATCTAATACAAAAGT+GGG | - | chr2_1:60742766-60742785 | Msa0215470:intron | 20.0% |
| !! | ATTAATAATAATTGTGTGGT+GGG | + | chr2_1:60742805-60742824 | None:intergenic | 20.0% |
| !! | TATTAATAATAATTGTGTGG+TGG | + | chr2_1:60742806-60742825 | None:intergenic | 20.0% |
| !! | ATAAAAAAAACAAGGTAAAG+TGG | - | chr2_1:60742823-60742842 | Msa0215470:intron | 20.0% |
| !!! | CAATTTTTTATGTTTTGCTT+TGG | - | chr2_1:60743074-60743093 | Msa0215470:intron | 20.0% |
| !!! | TTGTATAACACAAATTTTAG+TGG | + | chr2_1:60743122-60743141 | None:intergenic | 20.0% |
| !! | ATTAGGAATTGATACAAATT+AGG | - | chr2_1:60743142-60743161 | Msa0215470:intron | 20.0% |
| !!! | TTTAATTAAGTTGTTTACAG+CGG | + | chr2_1:60743451-60743470 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAATAGATTG+TGG | - | chr2_1:60743579-60743598 | Msa0215470:CDS | 20.0% |
| !!! | GTCATAAGTTATTTTCTTTA+AGG | - | chr2_1:60743604-60743623 | Msa0215470:intron | 20.0% |
| !! | ATATTTGAGTAAAGGAATAA+GGG | + | chr2_1:60744235-60744254 | None:intergenic | 20.0% |
| !! | GAATGGTTAATGAATTTAAA+AGG | - | chr2_1:60744355-60744374 | Msa0215470:CDS | 20.0% |
| !! | AACACAATTTGAATAGTTAA+TGG | + | chr2_1:60744474-60744493 | None:intergenic | 20.0% |
| !!! | AAGTATTACTACTTTTTTTG+TGG | + | chr2_1:60745024-60745043 | None:intergenic | 20.0% |
| !! | ACAAATACATTATTTATCTG+TGG | - | chr2_1:60745399-60745418 | Msa0215470:intron | 20.0% |
| !!! | AAGTATTACTACTTTTTTTG+TGG | + | chr2_1:60745024-60745043 | None:intergenic | 20.0% |
| !! | TAAATCCTCAAATAATTTGA+AGG | - | chr2_1:60745875-60745894 | Msa0215470:intron | 20.0% |
| !! | TTGTCTTGAAATCAAAATTA+AGG | + | chr2_1:60746218-60746237 | None:intergenic | 20.0% |
| ! | ATGTAAGAGAGTTATTGTTT+GGG | - | chr2_1:60742156-60742175 | Msa0215470:three_prime_UTR | 25.0% |
| ! | TTTGTTCATCTCTAATATCT+GGG | + | chr2_1:60742196-60742215 | None:intergenic | 25.0% |
| ! | ATTTGTTCATCTCTAATATC+TGG | + | chr2_1:60742197-60742216 | None:intergenic | 25.0% |
| ! | ATTCTTCCTTGGTTATAATT+TGG | + | chr2_1:60742256-60742275 | None:intergenic | 25.0% |
| !! | ATTCTGCTCATATTTTCTTT+GGG | + | chr2_1:60742341-60742360 | None:intergenic | 25.0% |
| !! | TTAATCCTTTTCTAAGTAAG+CGG | - | chr2_1:60742463-60742482 | Msa0215470:intron | 25.0% |
| !!! | TAATTTTTTTTGGGTAGCAA+GGG | + | chr2_1:60742549-60742568 | None:intergenic | 25.0% |
| !!! | ATAATTTTTTTTGGGTAGCA+AGG | + | chr2_1:60742550-60742569 | None:intergenic | 25.0% |
| ! | ATTATTTAATCGTGTCGTAT+AGG | - | chr2_1:60742696-60742715 | Msa0215470:intron | 25.0% |
| ! | GAATTGATACAAATTAGGTT+AGG | - | chr2_1:60743147-60743166 | Msa0215470:intron | 25.0% |
| ! | TAAATTCCAAAGCAAAATAG+TGG | + | chr2_1:60743185-60743204 | None:intergenic | 25.0% |
| !!! | ACTATTTTGCTTTGGAATTT+AGG | - | chr2_1:60743184-60743203 | Msa0215470:intron | 25.0% |
| ! | TAGGTTAGGAAAAACAAATT+AGG | - | chr2_1:60743203-60743222 | Msa0215470:intron | 25.0% |
| ! | GTGTTATACTTATACTATTG+TGG | - | chr2_1:60743238-60743257 | Msa0215470:intron | 25.0% |
| !!! | TTATACTATTGTGGCTTTTT+TGG | - | chr2_1:60743247-60743266 | Msa0215470:intron | 25.0% |
| !! | ACGGATTATACAAAAAAATG+CGG | + | chr2_1:60743290-60743309 | None:intergenic | 25.0% |
| ! | TTAAACTAATCTAATGCAGT+AGG | + | chr2_1:60743383-60743402 | None:intergenic | 25.0% |
| ! | AAGCTATCTCAAAAAACATA+TGG | - | chr2_1:60743555-60743574 | Msa0215470:CDS | 25.0% |
| !! | TTGAAAGAACATCTTATTTC+TGG | - | chr2_1:60743752-60743771 | Msa0215470:intron | 25.0% |
| ! | GATATTTGAGTAAAGGAATA+AGG | + | chr2_1:60744236-60744255 | None:intergenic | 25.0% |
| ! | ATGACAAGATATTTGAGTAA+AGG | + | chr2_1:60744243-60744262 | None:intergenic | 25.0% |
| ! | ACATCAATTTGACAACAAAT+TGG | - | chr2_1:60744291-60744310 | Msa0215470:CDS | 25.0% |
| ! | GATTAATTGTATTGAGTGAA+TGG | - | chr2_1:60744338-60744357 | Msa0215470:CDS | 25.0% |
| ! | ATGTAAACACTAGAAAATTG+TGG | + | chr2_1:60744440-60744459 | None:intergenic | 25.0% |
| ! | TGTTATACACCTAAAAATCA+TGG | - | chr2_1:60744552-60744571 | Msa0215470:CDS | 25.0% |
| ! | AAATGATTGTGTATTAGACA+TGG | - | chr2_1:60744762-60744781 | Msa0215470:intron | 25.0% |
| ! | AATGATTGTGTATTAGACAT+GGG | - | chr2_1:60744763-60744782 | Msa0215470:intron | 25.0% |
| ! | AAATCTCATATATGTTGTAG+TGG | + | chr2_1:60745087-60745106 | None:intergenic | 25.0% |
| ! | AGTAATATTTGGTAAGTGTT+AGG | - | chr2_1:60745163-60745182 | Msa0215470:intron | 25.0% |
| ! | TAATATAATTTAGGGATCCT+CGG | + | chr2_1:60745464-60745483 | None:intergenic | 25.0% |
| ! | AGAAACCTTCAAATTATTTG+AGG | + | chr2_1:60745883-60745902 | None:intergenic | 25.0% |
| ! | TATATATGAGAGATATCACT+TGG | - | chr2_1:60746021-60746040 | Msa0215470:intron | 25.0% |
| ! | ATATATGAGAGATATCACTT+GGG | - | chr2_1:60746022-60746041 | Msa0215470:intron | 25.0% |
| !! | GTATCTAATATCATTGGTTA+TGG | - | chr2_1:60746154-60746173 | Msa0215470:CDS | 25.0% |
| TACCATGAATTCAATCAACA+TGG | - | chr2_1:60742110-60742129 | Msa0215470:three_prime_UTR | 30.0% | |
| ACCATGAATTCAATCAACAT+GGG | - | chr2_1:60742111-60742130 | Msa0215470:three_prime_UTR | 30.0% | |
| AATAACTCTCTTACATCAGA+AGG | + | chr2_1:60742152-60742171 | None:intergenic | 30.0% | |
| GATGTAAGAGAGTTATTGTT+TGG | - | chr2_1:60742155-60742174 | Msa0215470:three_prime_UTR | 30.0% | |
| !! | ACCAAGGAAGAATTTGTTAA+TGG | - | chr2_1:60742263-60742282 | Msa0215470:CDS | 30.0% |
| ! | CATTCTGCTCATATTTTCTT+TGG | + | chr2_1:60742342-60742361 | None:intergenic | 30.0% |
| AAATATGAGCAGAATGTATC+AGG | - | chr2_1:60742346-60742365 | Msa0215470:CDS | 30.0% | |
| !! | TGTGTTATTTCAAATAGCAG+TGG | + | chr2_1:60742438-60742457 | None:intergenic | 30.0% |
| ! | ACTGCTATTTGAAATAACAC+AGG | - | chr2_1:60742437-60742456 | Msa0215470:intron | 30.0% |
| !!! | GTAGTTAACCTGTTACTTTT+AGG | + | chr2_1:60742966-60742985 | None:intergenic | 30.0% |
| ! | TACAAACCACTATTTTGCTT+TGG | - | chr2_1:60743176-60743195 | Msa0215470:intron | 30.0% |
| !! | TTTGCTTTGGAATTTAGGTT+AGG | - | chr2_1:60743189-60743208 | Msa0215470:intron | 30.0% |
| TACACTTGATTCAACAAGAA+CGG | + | chr2_1:60743309-60743328 | None:intergenic | 30.0% | |
| ATCTTATACATCGACACTTA+TGG | + | chr2_1:60743482-60743501 | None:intergenic | 30.0% | |
| !! | AACAGAGTTTTATCAAACCA+TGG | - | chr2_1:60743702-60743721 | Msa0215470:intron | 30.0% |
| !! | CTTTTGATAGCATCTTTATC+AGG | + | chr2_1:60743836-60743855 | None:intergenic | 30.0% |
| CTGATAAAGATGCTATCAAA+AGG | - | chr2_1:60743834-60743853 | Msa0215470:intron | 30.0% | |
| GCAGTGAAGAAGATTAAATT+TGG | - | chr2_1:60744037-60744056 | Msa0215470:intron | 30.0% | |
| !! | AGTGAGAATGAATTTGTTGA+TGG | - | chr2_1:60744127-60744146 | Msa0215470:intron | 30.0% |
| AACAAATTGGATAGTTAACG+CGG | - | chr2_1:60744304-60744323 | Msa0215470:CDS | 30.0% | |
| TCGTAATTAATGACGTTTAG+TGG | + | chr2_1:60744401-60744420 | None:intergenic | 30.0% | |
| GTTAATGCATTTCAAATGCA+TGG | + | chr2_1:60744676-60744695 | None:intergenic | 30.0% | |
| ACAATCATTTCATTAACCGT+TGG | + | chr2_1:60744752-60744771 | None:intergenic | 30.0% | |
| !!! | TTTTGAACACTTGCTATTAG+AGG | + | chr2_1:60744899-60744918 | None:intergenic | 30.0% |
| !! | CTCTAAAATTTGTAGCCAAA+GGG | + | chr2_1:60744973-60744992 | None:intergenic | 30.0% |
| !! | TCTCTAAAATTTGTAGCCAA+AGG | + | chr2_1:60744974-60744993 | None:intergenic | 30.0% |
| CTAAAACCATTTAGCAACAT+AGG | + | chr2_1:60745194-60745213 | None:intergenic | 30.0% | |
| ! | CTTCTTCACTATTTTATCCT+TGG | - | chr2_1:60745428-60745447 | Msa0215470:intron | 30.0% |
| TGAAGAAGTTAGATTGAAAG+AGG | + | chr2_1:60745793-60745812 | None:intergenic | 30.0% | |
| GTGTTTATGAACAACATTCT+TGG | - | chr2_1:60745975-60745994 | Msa0215470:intron | 30.0% | |
| GCAATTGTTTGTATTGTGAT+GGG | - | chr2_1:60746071-60746090 | Msa0215470:CDS | 30.0% | |
| ! | TTAGATACAAGAGGTATGTT+GGG | + | chr2_1:60746142-60746161 | None:intergenic | 30.0% |
| ! | ATTAGATACAAGAGGTATGT+TGG | + | chr2_1:60746143-60746162 | None:intergenic | 30.0% |
| CCAATGATATTAGATACAAG+AGG | + | chr2_1:60746151-60746170 | None:intergenic | 30.0% | |
| CCTCTTGTATCTAATATCAT+TGG | - | chr2_1:60746148-60746167 | Msa0215470:CDS | 30.0% | |
| GAAATAAAAAACGCTAGATG+TGG | - | chr2_1:60746241-60746260 | Msa0215470:five_prime_UTR | 30.0% | |
| ! | TCCCATGTTGATTGAATTCA+TGG | + | chr2_1:60742115-60742134 | None:intergenic | 35.0% |
| TGGTGACCAAATTATAACCA+AGG | - | chr2_1:60742247-60742266 | Msa0215470:CDS | 35.0% | |
| GCCATTAACAAATTCTTCCT+TGG | + | chr2_1:60742267-60742286 | None:intergenic | 35.0% | |
| TAAGCAAACAAAGCATGCTT+TGG | - | chr2_1:60742301-60742320 | Msa0215470:CDS | 35.0% | |
| !! | TGCTCATATTTTCTTTGGGA+AGG | + | chr2_1:60742337-60742356 | None:intergenic | 35.0% |
| AGTATCCGCTTACTTAGAAA+AGG | + | chr2_1:60742471-60742490 | None:intergenic | 35.0% | |
| CTTGTTTGGATAAACAACCA+GGG | - | chr2_1:60742496-60742515 | Msa0215470:intron | 35.0% | |
| TTGTTTGGATAAACAACCAG+GGG | - | chr2_1:60742497-60742516 | Msa0215470:intron | 35.0% | |
| !! | TCTTTTGGGTGTTAATCTTC+CGG | + | chr2_1:60742724-60742743 | None:intergenic | 35.0% |
| ATTAGATTCTCAATTCACCC+AGG | - | chr2_1:60742997-60743016 | Msa0215470:intron | 35.0% | |
| ATGTGAATTGAGATCATACC+TGG | + | chr2_1:60743026-60743045 | None:intergenic | 35.0% | |
| AAGCTAGCGATAATTCTATG+AGG | + | chr2_1:60743426-60743445 | None:intergenic | 35.0% | |
| !!! | GTTTTTTATGCATGCTCTCT+TGG | - | chr2_1:60743936-60743955 | Msa0215470:intron | 35.0% |
| ATGATGCAATAGGTTCTTTG+AGG | - | chr2_1:60743964-60743983 | Msa0215470:intron | 35.0% | |
| TGATGAGTTTCATGATGAGA+AGG | + | chr2_1:60744205-60744224 | None:intergenic | 35.0% | |
| ! | CGTCATCAACCATGATTTTT+AGG | + | chr2_1:60744564-60744583 | None:intergenic | 35.0% |
| !! | GTTGATGACGTTCAAAATCA+TGG | - | chr2_1:60744574-60744593 | Msa0215470:CDS | 35.0% |
| ATGGAAGAGAAACATACCAA+AGG | - | chr2_1:60744803-60744822 | Msa0215470:intron | 35.0% | |
| TGGAAGAGAAACATACCAAA+GGG | - | chr2_1:60744804-60744823 | Msa0215470:intron | 35.0% | |
| AGCTATAGCATATGTGATGT+TGG | - | chr2_1:60744844-60744863 | Msa0215470:intron | 35.0% | |
| GCTATAGCATATGTGATGTT+GGG | - | chr2_1:60744845-60744864 | Msa0215470:intron | 35.0% | |
| !! | CTCTTTCATTTTAGTCCCTT+TGG | - | chr2_1:60744955-60744974 | Msa0215470:intron | 35.0% |
| TACTTCTCACACAATGTATG+AGG | - | chr2_1:60745039-60745058 | Msa0215470:intron | 35.0% | |
| GTAAAGCCTATGTTGCTAAA+TGG | - | chr2_1:60745185-60745204 | Msa0215470:intron | 35.0% | |
| TACTTCTCACACAATGTATG+AGG | - | chr2_1:60745039-60745058 | Msa0215470:intron | 35.0% | |
| TTTGGGTCAATGCAGATTTA+TGG | - | chr2_1:60745948-60745967 | Msa0215470:intron | 35.0% | |
| ! | GGAATTTTCAGCTGATGTAT+TGG | - | chr2_1:60746043-60746062 | Msa0215470:CDS | 35.0% |
| ! | ATTTTCAGCTGATGTATTGG+TGG | - | chr2_1:60746046-60746065 | Msa0215470:CDS | 35.0% |
| GGCAATTGTTTGTATTGTGA+TGG | - | chr2_1:60746070-60746089 | Msa0215470:CDS | 35.0% | |
| AAAAGTGGAACGAAAACTAG+TGG | + | chr2_1:60746102-60746121 | None:intergenic | 35.0% | |
| AAACGCTAGATGTGGTTTAT+TGG | - | chr2_1:60746249-60746268 | Msa0215470:five_prime_UTR | 35.0% | |
| !! | AAATAGCAGTGGATTGTGCA+AGG | + | chr2_1:60742427-60742446 | None:intergenic | 40.0% |
| GCGGATACTTATACCTTGTT+TGG | - | chr2_1:60742482-60742501 | Msa0215470:intron | 40.0% | |
| CCTGGTTGTTTATCCAAACA+AGG | + | chr2_1:60742498-60742517 | None:intergenic | 40.0% | |
| ! | CCTTGTTTGGATAAACAACC+AGG | - | chr2_1:60742495-60742514 | Msa0215470:intron | 40.0% |
| TAATCGTGTCGTATAGGAAC+CGG | - | chr2_1:60742702-60742721 | Msa0215470:intron | 40.0% | |
| CACAACACAACACACAAAAC+AGG | - | chr2_1:60742863-60742882 | Msa0215470:intron | 40.0% | |
| TACTGTGTATTGTGTTGCCT+GGG | + | chr2_1:60742892-60742911 | None:intergenic | 40.0% | |
| !! | TACTTTTAGGTCACCATGCA+TGG | + | chr2_1:60742953-60742972 | None:intergenic | 40.0% |
| CATGGTGACCTAAAAGTAAC+AGG | - | chr2_1:60742955-60742974 | Msa0215470:intron | 40.0% | |
| CTAGCGATAATTCTATGAGG+TGG | + | chr2_1:60743423-60743442 | None:intergenic | 40.0% | |
| TTTCTCGTGTGTTCAATCCA+TGG | + | chr2_1:60743722-60743741 | None:intergenic | 40.0% | |
| TAAGTCATGCTCAGAGTGAT+AGG | - | chr2_1:60743780-60743799 | Msa0215470:intron | 40.0% | |
| AAGTCATGCTCAGAGTGATA+GGG | - | chr2_1:60743781-60743800 | Msa0215470:intron | 40.0% | |
| CTTGGCAACTATGATGCAAT+AGG | - | chr2_1:60743954-60743973 | Msa0215470:intron | 40.0% | |
| TAAATTTGGTACGACTGCAG+AGG | - | chr2_1:60744051-60744070 | Msa0215470:intron | 40.0% | |
| ! | CTTCAAGTTCTTGATGCCAA+CGG | - | chr2_1:60744091-60744110 | Msa0215470:intron | 40.0% |
| ACTAATTTCATCGTCTCCGT+TGG | + | chr2_1:60744110-60744129 | None:intergenic | 40.0% | |
| GGCTAATTATGCTCGATTGA+TGG | - | chr2_1:60744595-60744614 | Msa0215470:CDS | 40.0% | |
| GGTTACTTGCTTTCAATGGA+TGG | + | chr2_1:60744655-60744674 | None:intergenic | 40.0% | |
| GCATGGTTACTTGCTTTCAA+TGG | + | chr2_1:60744659-60744678 | None:intergenic | 40.0% | |
| GGAAGATGTTGAGAAGGTAA+TGG | - | chr2_1:60744784-60744803 | Msa0215470:intron | 40.0% | |
| GGAAGAGAAACATACCAAAG+GGG | - | chr2_1:60744805-60744824 | Msa0215470:intron | 40.0% | |
| !! | CAAAAATTCTCTGAAGCTGC+AGG | - | chr2_1:60744914-60744933 | Msa0215470:intron | 40.0% |
| !! | ATGTTGTAGTGGACTGAGAA+AGG | + | chr2_1:60745076-60745095 | None:intergenic | 40.0% |
| TCCTTGGTTTAAATACTCCG+AGG | - | chr2_1:60745444-60745463 | Msa0215470:intron | 40.0% | |
| ! | TCCTCGGAGTATTTAAACCA+AGG | + | chr2_1:60745448-60745467 | None:intergenic | 40.0% |
| !! | GAACAACATTCTTGGCTTTG+TGG | - | chr2_1:60745983-60746002 | Msa0215470:intron | 40.0% |
| ! | ATACAAGAGGTATGTTGGGA+AGG | + | chr2_1:60746138-60746157 | None:intergenic | 40.0% |
| !! | ATAATTGTGTGGTGGGCTGT+GGG | + | chr2_1:60742798-60742817 | None:intergenic | 45.0% |
| !! | AATAATTGTGTGGTGGGCTG+TGG | + | chr2_1:60742799-60742818 | None:intergenic | 45.0% |
| ACTGTGTATTGTGTTGCCTG+GGG | + | chr2_1:60742891-60742910 | None:intergenic | 45.0% | |
| GTACTGTGTATTGTGTTGCC+TGG | + | chr2_1:60742893-60742912 | None:intergenic | 45.0% | |
| GAGATCATACCTGGTAACCT+GGG | + | chr2_1:60743017-60743036 | None:intergenic | 45.0% | |
| TGAGATCATACCTGGTAACC+TGG | + | chr2_1:60743018-60743037 | None:intergenic | 45.0% | |
| CGTTGGCATCAAGAACTTGA+AGG | + | chr2_1:60744093-60744112 | None:intergenic | 45.0% | |
| GACATGGGAAGATGTTGAGA+AGG | - | chr2_1:60744778-60744797 | Msa0215470:intron | 45.0% | |
| ! | TTCAGCTGATGTATTGGTGG+TGG | - | chr2_1:60746049-60746068 | Msa0215470:CDS | 45.0% |
| !! | TTCGTTCCACTTTTCCTCTG+TGG | - | chr2_1:60746108-60746127 | Msa0215470:CDS | 45.0% |
| !!! | TCAAAAAAATAATTTTTTTT+GGG | + | chr2_1:60742558-60742577 | None:intergenic | 5.0% |
| !! | TATTATTAATAAAAAAAACA+AGG | - | chr2_1:60742815-60742834 | Msa0215470:intron | 5.0% |
| !! | TATTTAAATTAAGTAATATT+TGG | - | chr2_1:60745152-60745171 | Msa0215470:intron | 5.0% |
| !! | TATTCAAATAATATAATTTA+GGG | + | chr2_1:60745472-60745491 | None:intergenic | 5.0% |
| !! | ATATTCAAATAATATAATTT+AGG | + | chr2_1:60745473-60745492 | None:intergenic | 5.0% |
| !!! | TTATTTGAATATTTTTAAAT+AGG | - | chr2_1:60745481-60745500 | Msa0215470:intron | 5.0% |
| !!! | AATTTTAAGTAATTTATATT+TGG | - | chr2_1:60745607-60745626 | Msa0215470:intron | 5.0% |
| GATAAACAACCAGGGGCGAA+TGG | - | chr2_1:60742504-60742523 | Msa0215470:intron | 50.0% | |
| AGGGGCGAATGGTGGTATAA+GGG | - | chr2_1:60742515-60742534 | Msa0215470:intron | 50.0% | |
| GCGAATGGTGGTATAAGGGA+GGG | - | chr2_1:60742519-60742538 | Msa0215470:intron | 50.0% | |
| CGAATGGTGGTATAAGGGAG+GGG | - | chr2_1:60742520-60742539 | Msa0215470:intron | 50.0% | |
| ACACACAAAACAGGATCCCC+AGG | - | chr2_1:60742872-60742891 | Msa0215470:intron | 50.0% | |
| ! | ATGGCAGTGTTGCTATCGCA+TGG | + | chr2_1:60742934-60742953 | None:intergenic | 50.0% |
| GATAGCAACACTGCCATGCA+TGG | - | chr2_1:60742937-60742956 | Msa0215470:intron | 50.0% | |
| CTCAATTCACCCAGGTTACC+AGG | - | chr2_1:60743005-60743024 | Msa0215470:intron | 50.0% | |
| CATGCTCAGAGTGATAGGGT+TGG | - | chr2_1:60743785-60743804 | Msa0215470:intron | 50.0% | |
| ! | CTCAGAGTGATAGGGTTGGT+AGG | - | chr2_1:60743789-60743808 | Msa0215470:intron | 50.0% |
| GGTAGGCTGCTCAAAGATGA+TGG | - | chr2_1:60743806-60743825 | Msa0215470:intron | 50.0% | |
| ATACCAAAGGGGTGACTGCA+TGG | - | chr2_1:60744816-60744835 | Msa0215470:intron | 50.0% | |
| GGATGTCCACAGAGGAAAAG+TGG | + | chr2_1:60746117-60746136 | None:intergenic | 50.0% | |
| AAACAACCAGGGGCGAATGG+TGG | - | chr2_1:60742507-60742526 | Msa0215470:intron | 55.0% | |
| CTTATACCACCATTCGCCCC+TGG | + | chr2_1:60742516-60742535 | None:intergenic | 55.0% | |
| CAGGGGCGAATGGTGGTATA+AGG | - | chr2_1:60742514-60742533 | Msa0215470:intron | 55.0% | |
| GGCGAATGGTGGTATAAGGG+AGG | - | chr2_1:60742518-60742537 | Msa0215470:intron | 55.0% | |
| CAACCATGCAGTCACCCCTT+TGG | + | chr2_1:60744822-60744841 | None:intergenic | 55.0% | |
| CAAAGGGGTGACTGCATGGT+TGG | - | chr2_1:60744820-60744839 | Msa0215470:intron | 55.0% | |
| GTTGGGAAGGATGTCCACAG+AGG | + | chr2_1:60746125-60746144 | None:intergenic | 55.0% | |
| !! | GTGTGGTGGGCTGTGGGTAT+GGG | + | chr2_1:60742792-60742811 | None:intergenic | 60.0% |
| !! | TGTGTGGTGGGCTGTGGGTA+TGG | + | chr2_1:60742793-60742812 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 60742105 | 60746299 | 60742105 | ID=Msa0215470;Name=Msa0215470 |
| chr2_1 | mRNA | 60742105 | 60746299 | 60742105 | ID=Msa0215470-mRNA-1;Parent=Msa0215470;Name=Msa0215470-mRNA-1;_AED=0.15;_eAED=0.15;_QI=119|0.5|0.6|1|0.75|0.8|5|88|297 |
| chr2_1 | exon | 60742105 | 60742441 | 60742105 | ID=Msa0215470-mRNA-1:exon:16712;Parent=Msa0215470-mRNA-1 |
| chr2_1 | exon | 60743437 | 60743615 | 60743437 | ID=Msa0215470-mRNA-1:exon:16711;Parent=Msa0215470-mRNA-1 |
| chr2_1 | exon | 60744256 | 60744428 | 60744256 | ID=Msa0215470-mRNA-1:exon:16710;Parent=Msa0215470-mRNA-1 |
| chr2_1 | exon | 60744549 | 60744697 | 60744549 | ID=Msa0215470-mRNA-1:exon:16709;Parent=Msa0215470-mRNA-1 |
| chr2_1 | exon | 60746037 | 60746299 | 60746037 | ID=Msa0215470-mRNA-1:exon:16708;Parent=Msa0215470-mRNA-1 |
| chr2_1 | five_prime_UTR | 60746181 | 60746299 | 60746181 | ID=Msa0215470-mRNA-1:five_prime_utr;Parent=Msa0215470-mRNA-1 |
| chr2_1 | CDS | 60746037 | 60746180 | 60746037 | ID=Msa0215470-mRNA-1:cds;Parent=Msa0215470-mRNA-1 |
| chr2_1 | CDS | 60744549 | 60744697 | 60744549 | ID=Msa0215470-mRNA-1:cds;Parent=Msa0215470-mRNA-1 |
| chr2_1 | CDS | 60744256 | 60744428 | 60744256 | ID=Msa0215470-mRNA-1:cds;Parent=Msa0215470-mRNA-1 |
| chr2_1 | CDS | 60743437 | 60743615 | 60743437 | ID=Msa0215470-mRNA-1:cds;Parent=Msa0215470-mRNA-1 |
| chr2_1 | CDS | 60742193 | 60742441 | 60742193 | ID=Msa0215470-mRNA-1:cds;Parent=Msa0215470-mRNA-1 |
| chr2_1 | three_prime_UTR | 60742105 | 60742192 | 60742105 | ID=Msa0215470-mRNA-1:three_prime_utr;Parent=Msa0215470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
