Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215620 | XP_013464651.1 | 75.810 | 401 | 40 | 5 | 1 | 401 | 1 | 344 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215620 | sp|Q8L493|DAAA_ARATH | 58.140 | 258 | 107 | 1 | 144 | 400 | 116 | 373 | 2.03e-100 | 306 |
| Msa0215620 | sp|Q8L493|DAAA_ARATH | 57.143 | 63 | 24 | 1 | 26 | 88 | 58 | 117 | 1.65e-12 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215620 | I3SQ86 | 75.810 | 401 | 40 | 5 | 1 | 401 | 1 | 344 | 0.0 | 577 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197170 | Msa0215620 | 0.809080 | 2.257951e-50 | -8.615850e-47 |
| Msa0215620 | Msa0333680 | 0.959150 | 3.988559e-117 | -8.615850e-47 |
| Msa0215620 | Msa0854230 | 0.813695 | 2.247632e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215620 | MtrunA17_Chr2g0316981 | 75.810 | 401 | 40 | 5 | 1 | 401 | 1 | 344 | 0.0 | 577 |
| Msa0215620 | MtrunA17_Chr1g0157721 | 58.846 | 260 | 101 | 2 | 146 | 400 | 124 | 382 | 1.00e-103 | 311 |
| Msa0215620 | MtrunA17_Chr1g0157721 | 57.812 | 64 | 26 | 1 | 26 | 88 | 60 | 123 | 4.06e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215620 | AT5G57850.2 | 58.140 | 258 | 107 | 1 | 144 | 400 | 39 | 296 | 1.89e-102 | 306 |
| Msa0215620 | AT5G57850.2 | 72.500 | 40 | 11 | 0 | 49 | 88 | 1 | 40 | 2.30e-12 | 67.8 |
| Msa0215620 | AT5G57850.1 | 58.140 | 258 | 107 | 1 | 144 | 400 | 116 | 373 | 2.06e-101 | 306 |
| Msa0215620 | AT5G57850.1 | 57.143 | 63 | 24 | 1 | 26 | 88 | 58 | 117 | 1.68e-13 | 72.0 |
Find 109 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAATTTGCTTCACATAAA+AGG | 0.197526 | 2_1:+60964454 | None:intergenic |
| CAGATTATTCTTGCTTTGTT+TGG | 0.271291 | 2_1:-60965940 | Msa0215620:CDS |
| TATATGGTTGCACTGCTAAA+AGG | 0.283245 | 2_1:-60965184 | Msa0215620:CDS |
| AATGAACCTACAAAATCATT+TGG | 0.301492 | 2_1:-60964567 | Msa0215620:three_prime_UTR |
| TATTGTTTGTTTGTTTGTTT+AGG | 0.309251 | 2_1:+60967268 | None:intergenic |
| AGTTAGACTTGCCGTGCTTT+TGG | 0.309926 | 2_1:-60965843 | Msa0215620:CDS |
| GCTATGTATTCTAGTGTATA+TGG | 0.321285 | 2_1:-60966232 | Msa0215620:CDS |
| TGTACCATGTGATCATCTAT+TGG | 0.330668 | 2_1:+60966175 | None:intergenic |
| GATTTCTTACTGTCATCTTC+AGG | 0.332881 | 2_1:-60965497 | Msa0215620:CDS |
| CGAAGAGTTGATCGCGAAAA+AGG | 0.334858 | 2_1:+60965599 | None:intergenic |
| CATAAATCATAGTGCCTGTT+TGG | 0.335046 | 2_1:+60965803 | None:intergenic |
| ATGCATTGGGAAGCGAGAAT+TGG | 0.337716 | 2_1:+60965902 | None:intergenic |
| TATTCTTGCTTTGTTTGGTT+TGG | 0.340043 | 2_1:-60965935 | Msa0215620:CDS |
| GGATTTGCTATGGGATGATA+TGG | 0.343910 | 2_1:-60964632 | Msa0215620:CDS |
| CACCTTGATCAACCAACTTT+GGG | 0.358321 | 2_1:+60965147 | None:intergenic |
| GCAAATAAAGGTGCCTTCAT+TGG | 0.359777 | 2_1:+60965386 | None:intergenic |
| TCTAATACGGAAAGTACATT+TGG | 0.368821 | 2_1:+60965338 | None:intergenic |
| ATTGGGATTACCATCATTGC+TGG | 0.374631 | 2_1:+60966193 | None:intergenic |
| AAGGTGCATTTGGTTCTATA+TGG | 0.376862 | 2_1:-60965304 | Msa0215620:CDS |
| AGAATTAACAATGTTACTTT+CGG | 0.378886 | 2_1:-60964653 | Msa0215620:CDS |
| ACAAGTATTCTCTGTGTGTC+AGG | 0.378962 | 2_1:+60964601 | None:intergenic |
| ATGAAAGCAACATTCACATT+TGG | 0.387868 | 2_1:+60965251 | None:intergenic |
| ATGAACCTACAAAATCATTT+GGG | 0.390076 | 2_1:-60964566 | Msa0215620:three_prime_UTR |
| CTAGAATACATAGCTGGATA+TGG | 0.396785 | 2_1:+60966241 | None:intergenic |
| ACACCTTGATCAACCAACTT+TGG | 0.403764 | 2_1:+60965146 | None:intergenic |
| TTGTAGGTTCATTAAACATA+AGG | 0.405748 | 2_1:+60964577 | None:intergenic |
| TGATCATCCCACATGATGAT+AGG | 0.413305 | 2_1:+60965032 | None:intergenic |
| GTACCATGTGATCATCTATT+GGG | 0.414603 | 2_1:+60966176 | None:intergenic |
| GATACTGCTATTATGTTTGA+AGG | 0.421904 | 2_1:-60966133 | Msa0215620:CDS |
| CAAACAAAGCAAGAATAATC+TGG | 0.422622 | 2_1:+60965941 | None:intergenic |
| GCTGAAGAGAAAGGTGCATT+TGG | 0.425574 | 2_1:-60965314 | Msa0215620:CDS |
| TTTCTCTTCAGCTTCTAATA+CGG | 0.429071 | 2_1:+60965325 | None:intergenic |
| TGCATTGGGAAGCGAGAATT+GGG | 0.435130 | 2_1:+60965903 | None:intergenic |
| TCTTGCTTTGTTTGGTTTGG+CGG | 0.438996 | 2_1:-60965932 | Msa0215620:CDS |
| TGTTACTTTCGGATTTGCTA+TGG | 0.443052 | 2_1:-60964642 | Msa0215620:CDS |
| TCAATACAACAAGGAACATA+AGG | 0.447130 | 2_1:+60964533 | None:intergenic |
| AGAAAGGAACTCTAAGATAC+TGG | 0.447947 | 2_1:-60965538 | Msa0215620:CDS |
| GTTTGTTTGTTTGTTTAGGA+CGG | 0.454083 | 2_1:+60967272 | None:intergenic |
| CAACAAAATGAAACAGTTCA+AGG | 0.457032 | 2_1:+60964431 | None:intergenic |
| GCCCCAAAGTTGGTTGATCA+AGG | 0.457467 | 2_1:-60965149 | Msa0215620:CDS |
| ATTAACTTACCATCACCAAT+TGG | 0.463704 | 2_1:+60965008 | None:intergenic |
| CATACTTGATCCAGCAATGA+TGG | 0.467941 | 2_1:-60966203 | Msa0215620:CDS |
| GTCACGGCAAATCATGCATT+GGG | 0.471260 | 2_1:+60965889 | None:intergenic |
| TCTTGAACTTGCCCCAAAGT+TGG | 0.471833 | 2_1:-60965159 | Msa0215620:CDS |
| TGCTTTCATAACTCAAGAAA+AGG | 0.478668 | 2_1:-60965237 | Msa0215620:CDS |
| CTCAAGACACCTCTATGAGT+TGG | 0.480888 | 2_1:-60965675 | Msa0215620:intron |
| TATGTTATTACAGGTAAGGT+TGG | 0.487438 | 2_1:-60964676 | Msa0215620:intron |
| TACTGGTTAAGTGCAGGTCC+TGG | 0.488263 | 2_1:-60965521 | Msa0215620:CDS |
| CTATGGGATGATATGGTAGC+TGG | 0.500347 | 2_1:-60964625 | Msa0215620:CDS |
| TCTATATGGATTGATGAGGT+TGG | 0.504339 | 2_1:-60965290 | Msa0215620:CDS |
| GCTTCATCAAACATGGAGTT+CGG | 0.504869 | 2_1:-60966275 | Msa0215620:CDS |
| TGCTTTGTTTGGTTTGGCGG+TGG | 0.505398 | 2_1:-60965929 | Msa0215620:CDS |
| GTTACTTTCGGATTTGCTAT+GGG | 0.509505 | 2_1:-60964641 | Msa0215620:CDS |
| CTGTCTTGCCTATCATCATG+TGG | 0.512259 | 2_1:-60965040 | Msa0215620:CDS |
| ATTATCATAATGACGAAAGA+TGG | 0.514851 | 2_1:-60967354 | Msa0215620:five_prime_UTR |
| TACTTCCAGTGTACCAATGA+AGG | 0.515569 | 2_1:-60965399 | Msa0215620:CDS |
| GTGATATAGTAATTGATAGC+AGG | 0.520750 | 2_1:+60967206 | None:intergenic |
| ACTGAGACCACTGCAACCTC+TGG | 0.521559 | 2_1:-60967072 | Msa0215620:intron |
| GAGGTTGCAGTGGTCTCAGT+AGG | 0.525496 | 2_1:+60967075 | None:intergenic |
| CACATGATGATAGGCAAGAC+AGG | 0.530752 | 2_1:+60965041 | None:intergenic |
| AGTCACGGCAAATCATGCAT+TGG | 0.531700 | 2_1:+60965888 | None:intergenic |
| CGTGTTCTCTTCATCATCTG+AGG | 0.533298 | 2_1:-60966854 | Msa0215620:intron |
| GATTTCTCTCAGTGCAAAGA+AGG | 0.541297 | 2_1:-60965434 | Msa0215620:CDS |
| GATGACAGTAAGAAATCTCC+AGG | 0.544571 | 2_1:+60965503 | None:intergenic |
| TTGAGGCTGATCTTAAGAAA+CGG | 0.550222 | 2_1:+60965639 | None:intergenic |
| ATACTGCTATTATGTTTGAA+GGG | 0.551151 | 2_1:-60966132 | Msa0215620:intron |
| TGGACTTCGACTGTGTGGTA+AGG | 0.554529 | 2_1:+60965961 | None:intergenic |
| GCGGTATCAAAATTGAAGAA+AGG | 0.557986 | 2_1:-60965554 | Msa0215620:CDS |
| CTAAGATACTGGTTAAGTGC+AGG | 0.560722 | 2_1:-60965527 | Msa0215620:CDS |
| ATGACTACTGCGTAGAATGC+AGG | 0.561557 | 2_1:+60965464 | None:intergenic |
| AGGTTGCAGTGGTCTCAGTA+GGG | 0.572433 | 2_1:+60967076 | None:intergenic |
| TATACACTAGAATACATAGC+TGG | 0.574410 | 2_1:+60966235 | None:intergenic |
| AGGTGCCTTCATTGGTACAC+TGG | 0.574750 | 2_1:+60965394 | None:intergenic |
| CTACAAAGCAAGAGAAGGAA+TGG | 0.578037 | 2_1:+60967175 | None:intergenic |
| GCTGTTGAAATGATGTATGT+AGG | 0.580482 | 2_1:-60965074 | Msa0215620:CDS |
| ATGTGGGATGATCAACCAAT+TGG | 0.582385 | 2_1:-60965023 | Msa0215620:CDS |
| CACATGGTACATAGAGGCCA+TGG | 0.583140 | 2_1:-60966163 | Msa0215620:CDS |
| ACCTTGATCAACCAACTTTG+GGG | 0.583923 | 2_1:+60965148 | None:intergenic |
| CAGCATTCTAATACAACTAA+CGG | 0.586750 | 2_1:-60965576 | Msa0215620:CDS |
| GTATTAGAAGCTGAAGAGAA+AGG | 0.586831 | 2_1:-60965323 | Msa0215620:CDS |
| ACTGCGTAGAATGCAGGTGT+TGG | 0.589080 | 2_1:+60965470 | None:intergenic |
| AAGAGAAGGAATGGTGGTGG+TGG | 0.592555 | 2_1:+60967184 | None:intergenic |
| GTTACGAATGGCCAAAAGCA+CGG | 0.594541 | 2_1:+60965832 | None:intergenic |
| TAGAAAAGCTTCATCAAACA+TGG | 0.598481 | 2_1:-60966282 | Msa0215620:CDS |
| GGTGAACATCCAACTCATAG+AGG | 0.601894 | 2_1:+60965666 | None:intergenic |
| TGTCTTGCCTATCATCATGT+GGG | 0.602668 | 2_1:-60965039 | Msa0215620:CDS |
| GATGATCACATGGTACATAG+AGG | 0.611347 | 2_1:-60966169 | Msa0215620:CDS |
| GTTTGGATAAAAGTTACGAA+TGG | 0.611489 | 2_1:+60965820 | None:intergenic |
| CAAGTATTCTCTGTGTGTCA+GGG | 0.611968 | 2_1:+60964602 | None:intergenic |
| AAGTGCTACAAAGCAAGAGA+AGG | 0.616157 | 2_1:+60967170 | None:intergenic |
| AGCAAGAGAAGGAATGGTGG+TGG | 0.618774 | 2_1:+60967181 | None:intergenic |
| ATCATAATGACGAAAGATGG+TGG | 0.623788 | 2_1:-60967351 | Msa0215620:five_prime_UTR |
| CATTGTAAATCAATACAACA+AGG | 0.626622 | 2_1:+60964524 | None:intergenic |
| TAGCAGTATCAAACACGCCA+TGG | 0.630664 | 2_1:+60966146 | None:intergenic |
| TGGTTCTATATGGATTGATG+AGG | 0.634951 | 2_1:-60965294 | Msa0215620:CDS |
| GAGGTTGGTTATATTGCTGA+AGG | 0.635904 | 2_1:-60965275 | Msa0215620:CDS |
| TCATCAAACATGGAGTTCGG+TGG | 0.644411 | 2_1:-60966272 | Msa0215620:CDS |
| TCTCAGCTTCAAGAAAGTCA+CGG | 0.653352 | 2_1:+60965873 | None:intergenic |
| TAATCTGGACTTCGACTGTG+TGG | 0.658455 | 2_1:+60965956 | None:intergenic |
| CAACTCACCAGAGGTTGCAG+TGG | 0.666043 | 2_1:+60967065 | None:intergenic |
| GATGATCAACCAATTGGTGA+TGG | 0.668433 | 2_1:-60965017 | Msa0215620:intron |
| CTGATCTTAAGAAACGGTCA+AGG | 0.670298 | 2_1:+60965645 | None:intergenic |
| ACAGAAGAACATGACAAAGG+TGG | 0.672255 | 2_1:+60967235 | None:intergenic |
| AATCCCAATAGATGATCACA+TGG | 0.675252 | 2_1:-60966179 | Msa0215620:CDS |
| CAAAGCAAGAGAAGGAATGG+TGG | 0.675306 | 2_1:+60967178 | None:intergenic |
| AGAACAGAAGAACATGACAA+AGG | 0.683986 | 2_1:+60967232 | None:intergenic |
| ATGTATTCTAGTGTATATGG+AGG | 0.687618 | 2_1:-60966229 | Msa0215620:CDS |
| CATTCTAATACAACTAACGG+CGG | 0.748431 | 2_1:-60965573 | Msa0215620:CDS |
| GCACTTCACAAAGTACACAG+TGG | 0.777823 | 2_1:-60967153 | Msa0215620:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGTTTCAAATTAGAAT+AGG | + | chr2_1:60964711-60964730 | None:intergenic | 15.0% |
| !!! | ATTCTAATTTGAAACTTTAA+TGG | - | chr2_1:60964711-60964730 | Msa0215620:intron | 15.0% |
| !! | ATTCTATCATTATTATAAGA+TGG | + | chr2_1:60964931-60964950 | None:intergenic | 15.0% |
| !!! | TTTTGATGTTGTTATACAAT+TGG | + | chr2_1:60964406-60964425 | None:intergenic | 20.0% |
| !! | TATTGTTTGTTTGTTTGTTT+AGG | + | chr2_1:60964463-60964482 | None:intergenic | 20.0% |
| !!! | TGAATTTTTTCTTTACTTCA+TGG | - | chr2_1:60964625-60964644 | Msa0215620:CDS | 20.0% |
| !!! | GAATTTTTTCTTTACTTCAT+GGG | - | chr2_1:60964626-60964645 | Msa0215620:CDS | 20.0% |
| !!! | AATTTTTTCTTTACTTCATG+GGG | - | chr2_1:60964627-60964646 | Msa0215620:CDS | 20.0% |
| !!! | TGTTCTTATTGTATATGTTT+TGG | - | chr2_1:60964789-60964808 | Msa0215620:intron | 20.0% |
| !! | GAGTTAAAAAAATGCATTAT+TGG | - | chr2_1:60965974-60965993 | Msa0215620:intron | 20.0% |
| !!! | TTTTTCATTGTTGCAAATAA+AGG | + | chr2_1:60966357-60966376 | None:intergenic | 20.0% |
| !! | TATAGAATGTTATCGAAAAA+AGG | + | chr2_1:60966528-60966547 | None:intergenic | 20.0% |
| !!! | TTTTTCGATAACATTCTATA+TGG | - | chr2_1:60966528-60966547 | Msa0215620:intron | 20.0% |
| !! | TAAGTAAAAAATAATTGGGA+CGG | + | chr2_1:60966931-60966950 | None:intergenic | 20.0% |
| !!! | AGAATTAACAATGTTACTTT+CGG | - | chr2_1:60967075-60967094 | Msa0215620:CDS | 20.0% |
| ! | ATTATCATAATGACGAAAGA+TGG | - | chr2_1:60964374-60964393 | Msa0215620:three_prime_UTR | 25.0% |
| !! | TGCTTTACTAGTTCATATTT+TGG | - | chr2_1:60964737-60964756 | Msa0215620:intron | 25.0% |
| !!! | GCTAAATTTGTTTTCTTTCT+TGG | - | chr2_1:60964811-60964830 | Msa0215620:intron | 25.0% |
| ! | AACATAATTCTTATTCCACT+AGG | + | chr2_1:60965162-60965181 | None:intergenic | 25.0% |
| ! | GAATAAGAATTATGTTGCAT+CGG | - | chr2_1:60965166-60965185 | Msa0215620:CDS | 25.0% |
| ! | TATGACACTTAACACTAAAA+CGG | + | chr2_1:60965312-60965331 | None:intergenic | 25.0% |
| ! | TTAAAGTTTGCAAGTTTCAT+TGG | - | chr2_1:60965404-60965423 | Msa0215620:CDS | 25.0% |
| ! | ATACTGCTATTATGTTTGAA+GGG | - | chr2_1:60965596-60965615 | Msa0215620:CDS | 25.0% |
| !!! | AAGCTTTGTTAAATCAAAAG+TGG | - | chr2_1:60965651-60965670 | Msa0215620:CDS | 25.0% |
| ! | TTTGTTAAATCAAAAGTGGT+TGG | - | chr2_1:60965655-60965674 | Msa0215620:CDS | 25.0% |
| !! | AAGTAGTTAAGCTTTAGTTA+AGG | - | chr2_1:60965682-60965701 | Msa0215620:intron | 25.0% |
| ! | ACCAAAAATTATTCCAGTTA+GGG | + | chr2_1:60965739-60965758 | None:intergenic | 25.0% |
| !! | TTCATATCGATTAAGCTTAA+AGG | + | chr2_1:60966795-60966814 | None:intergenic | 25.0% |
| ! | ATAAGATTCAATTCACGATT+CGG | - | chr2_1:60966994-60967013 | Msa0215620:intron | 25.0% |
| ! | TTGATTGTCTATGTTATTAC+AGG | - | chr2_1:60967043-60967062 | Msa0215620:intron | 25.0% |
| ! | TTGTAGGTTCATTAAACATA+AGG | + | chr2_1:60967154-60967173 | None:intergenic | 25.0% |
| ! | AATGAACCTACAAAATCATT+TGG | - | chr2_1:60967161-60967180 | Msa0215620:five_prime_UTR | 25.0% |
| ! | ATGAACCTACAAAATCATTT+GGG | - | chr2_1:60967162-60967181 | Msa0215620:five_prime_UTR | 25.0% |
| ! | CATTGTAAATCAATACAACA+AGG | + | chr2_1:60967207-60967226 | None:intergenic | 25.0% |
| !!! | ACTAATTTGCTTCACATAAA+AGG | + | chr2_1:60967277-60967296 | None:intergenic | 25.0% |
| GTTTGTTTGTTTGTTTAGGA+CGG | + | chr2_1:60964459-60964478 | None:intergenic | 30.0% | |
| ! | GTGATATAGTAATTGATAGC+AGG | + | chr2_1:60964525-60964544 | None:intergenic | 30.0% |
| AATAGGATCACAAAAACTGA+AGG | + | chr2_1:60964694-60964713 | None:intergenic | 30.0% | |
| ATGGTACTACAAAAAAGTGA+AGG | + | chr2_1:60964912-60964931 | None:intergenic | 30.0% | |
| TACATAGTTCTTATTCCACT+AGG | + | chr2_1:60964987-60965006 | None:intergenic | 30.0% | |
| GAATAAGAACTATGTAGCAT+CGG | - | chr2_1:60964991-60965010 | Msa0215620:intron | 30.0% | |
| !! | CTTCATTTTGAAAATGTCTC+TGG | - | chr2_1:60965016-60965035 | Msa0215620:intron | 30.0% |
| TCGGTAATGATTTGAGAAAA+TGG | + | chr2_1:60965276-60965295 | None:intergenic | 30.0% | |
| ATTCAGTGCTTCAAAAGATA+AGG | - | chr2_1:60965331-60965350 | Msa0215620:CDS | 30.0% | |
| TAGAAAAGCTTCATCAAACA+TGG | - | chr2_1:60965446-60965465 | Msa0215620:CDS | 30.0% | |
| TATACACTAGAATACATAGC+TGG | + | chr2_1:60965496-60965515 | None:intergenic | 30.0% | |
| GCTATGTATTCTAGTGTATA+TGG | - | chr2_1:60965496-60965515 | Msa0215620:CDS | 30.0% | |
| ATGTATTCTAGTGTATATGG+AGG | - | chr2_1:60965499-60965518 | Msa0215620:CDS | 30.0% | |
| GATACTGCTATTATGTTTGA+AGG | - | chr2_1:60965595-60965614 | Msa0215620:CDS | 30.0% | |
| AACTAAAGCTTAACTACTTC+AGG | + | chr2_1:60965681-60965700 | None:intergenic | 30.0% | |
| TTAGTTAAGGTTGAATCACT+TGG | - | chr2_1:60965695-60965714 | Msa0215620:intron | 30.0% | |
| TAGTTAAGGTTGAATCACTT+GGG | - | chr2_1:60965696-60965715 | Msa0215620:intron | 30.0% | |
| ! | TCCCTAACTGGAATAATTTT+TGG | - | chr2_1:60965735-60965754 | Msa0215620:intron | 30.0% |
| GACCAAAAATTATTCCAGTT+AGG | + | chr2_1:60965740-60965759 | None:intergenic | 30.0% | |
| CAAACAAAGCAAGAATAATC+TGG | + | chr2_1:60965790-60965809 | None:intergenic | 30.0% | |
| ! | CAGATTATTCTTGCTTTGTT+TGG | - | chr2_1:60965788-60965807 | Msa0215620:intron | 30.0% |
| !! | TATTCTTGCTTTGTTTGGTT+TGG | - | chr2_1:60965793-60965812 | Msa0215620:intron | 30.0% |
| GTTTGGATAAAAGTTACGAA+TGG | + | chr2_1:60965911-60965930 | None:intergenic | 30.0% | |
| ! | TTCGTAACTTTTATCCAAAC+AGG | - | chr2_1:60965911-60965930 | Msa0215620:CDS | 30.0% |
| TTAACTCTACAGTTCCTATA+GGG | + | chr2_1:60965961-60965980 | None:intergenic | 30.0% | |
| TTTAACTCTACAGTTCCTAT+AGG | + | chr2_1:60965962-60965981 | None:intergenic | 30.0% | |
| CAGCATTCTAATACAACTAA+CGG | - | chr2_1:60966152-60966171 | Msa0215620:CDS | 30.0% | |
| ! | TCTAATACGGAAAGTACATT+TGG | + | chr2_1:60966393-60966412 | None:intergenic | 30.0% |
| TTTCTCTTCAGCTTCTAATA+CGG | + | chr2_1:60966406-60966425 | None:intergenic | 30.0% | |
| ATGAAAGCAACATTCACATT+TGG | + | chr2_1:60966480-60966499 | None:intergenic | 30.0% | |
| TGCTTTCATAACTCAAGAAA+AGG | - | chr2_1:60966491-60966510 | Msa0215620:intron | 30.0% | |
| AACTACTAAAAATCTGACTG+TGG | - | chr2_1:60966617-60966636 | Msa0215620:intron | 30.0% | |
| ATTAACTTACCATCACCAAT+TGG | + | chr2_1:60966723-60966742 | None:intergenic | 30.0% | |
| !! | AATTGGTGATGGTAAGTTAA+TGG | - | chr2_1:60966722-60966741 | Msa0215620:intron | 30.0% |
| TGTGTATATCTATCCTTGTT+TGG | - | chr2_1:60966756-60966775 | Msa0215620:intron | 30.0% | |
| TGTCTATGTTATTACAGGTA+AGG | - | chr2_1:60967048-60967067 | Msa0215620:intron | 30.0% | |
| TATGTTATTACAGGTAAGGT+TGG | - | chr2_1:60967052-60967071 | Msa0215620:intron | 30.0% | |
| ! | GTATTCCCAAATGATTTTGT+AGG | + | chr2_1:60967170-60967189 | None:intergenic | 30.0% |
| TCAATACAACAAGGAACATA+AGG | + | chr2_1:60967198-60967217 | None:intergenic | 30.0% | |
| CAACAAAATGAAACAGTTCA+AGG | + | chr2_1:60967300-60967319 | None:intergenic | 30.0% | |
| ATCATAATGACGAAAGATGG+TGG | - | chr2_1:60964377-60964396 | Msa0215620:three_prime_UTR | 35.0% | |
| AGAACAGAAGAACATGACAA+AGG | + | chr2_1:60964499-60964518 | None:intergenic | 35.0% | |
| AAGTCAGCTATATGTATCGA+AGG | + | chr2_1:60964962-60964981 | None:intergenic | 35.0% | |
| ! | ATATAGCTGACTTTACCTAG+TGG | - | chr2_1:60964969-60964988 | Msa0215620:intron | 35.0% |
| CTAGAATACATAGCTGGATA+TGG | + | chr2_1:60965490-60965509 | None:intergenic | 35.0% | |
| AATCCCAATAGATGATCACA+TGG | - | chr2_1:60965549-60965568 | Msa0215620:CDS | 35.0% | |
| GTACCATGTGATCATCTATT+GGG | + | chr2_1:60965555-60965574 | None:intergenic | 35.0% | |
| TGTACCATGTGATCATCTAT+TGG | + | chr2_1:60965556-60965575 | None:intergenic | 35.0% | |
| AGTTAAGGTTGAATCACTTG+GGG | - | chr2_1:60965697-60965716 | Msa0215620:intron | 35.0% | |
| CATAAATCATAGTGCCTGTT+TGG | + | chr2_1:60965928-60965947 | None:intergenic | 35.0% | |
| TAACTCTACAGTTCCTATAG+GGG | + | chr2_1:60965960-60965979 | None:intergenic | 35.0% | |
| TTGAGGCTGATCTTAAGAAA+CGG | + | chr2_1:60966092-60966111 | None:intergenic | 35.0% | |
| CATTCTAATACAACTAACGG+CGG | - | chr2_1:60966155-60966174 | Msa0215620:CDS | 35.0% | |
| GCGGTATCAAAATTGAAGAA+AGG | - | chr2_1:60966174-60966193 | Msa0215620:CDS | 35.0% | |
| !! | AGAAAGGAACTCTAAGATAC+TGG | - | chr2_1:60966190-60966209 | Msa0215620:CDS | 35.0% |
| GATTTCTTACTGTCATCTTC+AGG | - | chr2_1:60966231-60966250 | Msa0215620:CDS | 35.0% | |
| GTATTAGAAGCTGAAGAGAA+AGG | - | chr2_1:60966405-60966424 | Msa0215620:intron | 35.0% | |
| !! | AAGGTGCATTTGGTTCTATA+TGG | - | chr2_1:60966424-60966443 | Msa0215620:intron | 35.0% |
| ! | TGGTTCTATATGGATTGATG+AGG | - | chr2_1:60966434-60966453 | Msa0215620:intron | 35.0% |
| ! | TCTATATGGATTGATGAGGT+TGG | - | chr2_1:60966438-60966457 | Msa0215620:intron | 35.0% |
| TATATGGTTGCACTGCTAAA+AGG | - | chr2_1:60966544-60966563 | Msa0215620:intron | 35.0% | |
| GCTGTTGAAATGATGTATGT+AGG | - | chr2_1:60966654-60966673 | Msa0215620:intron | 35.0% | |
| TTAATGCTTCATGCCAAACA+AGG | + | chr2_1:60966772-60966791 | None:intergenic | 35.0% | |
| ! | CAATTCACGATTCGGAAAAT+AGG | - | chr2_1:60967002-60967021 | Msa0215620:intron | 35.0% |
| !! | TGTTACTTTCGGATTTGCTA+TGG | - | chr2_1:60967086-60967105 | Msa0215620:CDS | 35.0% |
| !! | GTTACTTTCGGATTTGCTAT+GGG | - | chr2_1:60967087-60967106 | Msa0215620:CDS | 35.0% |
| ACAGAAGAACATGACAAAGG+TGG | + | chr2_1:60964496-60964515 | None:intergenic | 40.0% | |
| CTACAAAGCAAGAGAAGGAA+TGG | + | chr2_1:60964556-60964575 | None:intergenic | 40.0% | |
| AAGTGCTACAAAGCAAGAGA+AGG | + | chr2_1:60964561-60964580 | None:intergenic | 40.0% | |
| TGTCGTGTCAGTGTCAAATA+AGG | + | chr2_1:60965056-60965075 | None:intergenic | 40.0% | |
| !!! | CTTCATTTTGGAAGTGTCTC+TGG | - | chr2_1:60965191-60965210 | Msa0215620:CDS | 40.0% |
| AAACGGTAACACGTAGACAT+CGG | + | chr2_1:60965295-60965314 | None:intergenic | 40.0% | |
| GCTTCATCAAACATGGAGTT+CGG | - | chr2_1:60965453-60965472 | Msa0215620:CDS | 40.0% | |
| CATACTTGATCCAGCAATGA+TGG | - | chr2_1:60965525-60965544 | Msa0215620:CDS | 40.0% | |
| ATTGGGATTACCATCATTGC+TGG | + | chr2_1:60965538-60965557 | None:intergenic | 40.0% | |
| GATGATCACATGGTACATAG+AGG | - | chr2_1:60965559-60965578 | Msa0215620:CDS | 40.0% | |
| TTCCAGTTAGGGATTGAACT+CGG | + | chr2_1:60965728-60965747 | None:intergenic | 40.0% | |
| !! | TCTTGCTTTGTTTGGTTTGG+CGG | - | chr2_1:60965796-60965815 | Msa0215620:intron | 40.0% |
| TCTCAGCTTCAAGAAAGTCA+CGG | + | chr2_1:60965858-60965877 | None:intergenic | 40.0% | |
| ACAGTTCCTATAGGGGAAAA+GGG | + | chr2_1:60965953-60965972 | None:intergenic | 40.0% | |
| TACAGTTCCTATAGGGGAAA+AGG | + | chr2_1:60965954-60965973 | None:intergenic | 40.0% | |
| CTGATCTTAAGAAACGGTCA+AGG | + | chr2_1:60966086-60966105 | None:intergenic | 40.0% | |
| !! | CGAGGATATCTTTGCTTTTG+AGG | + | chr2_1:60966109-60966128 | None:intergenic | 40.0% |
| ! | CTAAGATACTGGTTAAGTGC+AGG | - | chr2_1:60966201-60966220 | Msa0215620:CDS | 40.0% |
| GATGACAGTAAGAAATCTCC+AGG | + | chr2_1:60966228-60966247 | None:intergenic | 40.0% | |
| GATTTCTCTCAGTGCAAAGA+AGG | - | chr2_1:60966294-60966313 | Msa0215620:intron | 40.0% | |
| TACTTCCAGTGTACCAATGA+AGG | - | chr2_1:60966329-60966348 | Msa0215620:intron | 40.0% | |
| !! | GCAAATAAAGGTGCCTTCAT+TGG | + | chr2_1:60966345-60966364 | None:intergenic | 40.0% |
| ! | GAGGTTGGTTATATTGCTGA+AGG | - | chr2_1:60966453-60966472 | Msa0215620:intron | 40.0% |
| ACCTTGATCAACCAACTTTG+GGG | + | chr2_1:60966583-60966602 | None:intergenic | 40.0% | |
| CACCTTGATCAACCAACTTT+GGG | + | chr2_1:60966584-60966603 | None:intergenic | 40.0% | |
| ACACCTTGATCAACCAACTT+TGG | + | chr2_1:60966585-60966604 | None:intergenic | 40.0% | |
| TGTCTTGCCTATCATCATGT+GGG | - | chr2_1:60966689-60966708 | Msa0215620:intron | 40.0% | |
| TGATCATCCCACATGATGAT+AGG | + | chr2_1:60966699-60966718 | None:intergenic | 40.0% | |
| ATGTGGGATGATCAACCAAT+TGG | - | chr2_1:60966705-60966724 | Msa0215620:intron | 40.0% | |
| GATGATCAACCAATTGGTGA+TGG | - | chr2_1:60966711-60966730 | Msa0215620:intron | 40.0% | |
| !! | GGATTTGCTATGGGATGATA+TGG | - | chr2_1:60967096-60967115 | Msa0215620:exon | 40.0% |
| CAAGTATTCTCTGTGTGTCA+GGG | + | chr2_1:60967129-60967148 | None:intergenic | 40.0% | |
| ACAAGTATTCTCTGTGTGTC+AGG | + | chr2_1:60967130-60967149 | None:intergenic | 40.0% | |
| CAAAGCAAGAGAAGGAATGG+TGG | + | chr2_1:60964553-60964572 | None:intergenic | 45.0% | |
| GCACTTCACAAAGTACACAG+TGG | - | chr2_1:60964575-60964594 | Msa0215620:exon | 45.0% | |
| CGTGTTCTCTTCATCATCTG+AGG | - | chr2_1:60964874-60964893 | Msa0215620:intron | 45.0% | |
| ! | ATGTAGCTGACTTCACCTAG+TGG | - | chr2_1:60965144-60965163 | Msa0215620:CDS | 45.0% |
| !! | GTTGCATCGGCACTTCATTT+TGG | - | chr2_1:60965179-60965198 | Msa0215620:CDS | 45.0% |
| TCATCAAACATGGAGTTCGG+TGG | - | chr2_1:60965456-60965475 | Msa0215620:CDS | 45.0% | |
| TAGCAGTATCAAACACGCCA+TGG | + | chr2_1:60965585-60965604 | None:intergenic | 45.0% | |
| TCCAGTTAGGGATTGAACTC+GGG | + | chr2_1:60965727-60965746 | None:intergenic | 45.0% | |
| TAATCTGGACTTCGACTGTG+TGG | + | chr2_1:60965775-60965794 | None:intergenic | 45.0% | |
| TGCATTGGGAAGCGAGAATT+GGG | + | chr2_1:60965828-60965847 | None:intergenic | 45.0% | |
| ATGCATTGGGAAGCGAGAAT+TGG | + | chr2_1:60965829-60965848 | None:intergenic | 45.0% | |
| GTCACGGCAAATCATGCATT+GGG | + | chr2_1:60965842-60965861 | None:intergenic | 45.0% | |
| AGTCACGGCAAATCATGCAT+TGG | + | chr2_1:60965843-60965862 | None:intergenic | 45.0% | |
| ! | AGTTAGACTTGCCGTGCTTT+TGG | - | chr2_1:60965885-60965904 | Msa0215620:CDS | 45.0% |
| GTTACGAATGGCCAAAAGCA+CGG | + | chr2_1:60965899-60965918 | None:intergenic | 45.0% | |
| ! | TATGTGCCCTTTTCCCCTAT+AGG | - | chr2_1:60965944-60965963 | Msa0215620:CDS | 45.0% |
| CTCAAGACACCTCTATGAGT+TGG | - | chr2_1:60966053-60966072 | Msa0215620:intron | 45.0% | |
| GGTGAACATCCAACTCATAG+AGG | + | chr2_1:60966065-60966084 | None:intergenic | 45.0% | |
| ! | CGAAGAGTTGATCGCGAAAA+AGG | + | chr2_1:60966132-60966151 | None:intergenic | 45.0% |
| ATGACTACTGCGTAGAATGC+AGG | + | chr2_1:60966267-60966286 | None:intergenic | 45.0% | |
| ! | GCTGAAGAGAAAGGTGCATT+TGG | - | chr2_1:60966414-60966433 | Msa0215620:intron | 45.0% |
| TCTTGAACTTGCCCCAAAGT+TGG | - | chr2_1:60966569-60966588 | Msa0215620:intron | 45.0% | |
| CACATGATGATAGGCAAGAC+AGG | + | chr2_1:60966690-60966709 | None:intergenic | 45.0% | |
| CTGTCTTGCCTATCATCATG+TGG | - | chr2_1:60966688-60966707 | Msa0215620:intron | 45.0% | |
| CTATGGGATGATATGGTAGC+TGG | - | chr2_1:60967103-60967122 | Msa0215620:exon | 45.0% | |
| !!! | TTTTTAAGTAAAAAATAATT+GGG | + | chr2_1:60966935-60966954 | None:intergenic | 5.0% |
| !!! | ATTTTTAAGTAAAAAATAAT+TGG | + | chr2_1:60966936-60966955 | None:intergenic | 5.0% |
| !! | AAGAGAAGGAATGGTGGTGG+TGG | + | chr2_1:60964547-60964566 | None:intergenic | 50.0% |
| AGCAAGAGAAGGAATGGTGG+TGG | + | chr2_1:60964550-60964569 | None:intergenic | 50.0% | |
| AGGTTGCAGTGGTCTCAGTA+GGG | + | chr2_1:60964655-60964674 | None:intergenic | 50.0% | |
| ACTGCAACCTCTGGTGAGTT+GGG | - | chr2_1:60964665-60964684 | Msa0215620:CDS | 50.0% | |
| CACATGGTACATAGAGGCCA+TGG | - | chr2_1:60965565-60965584 | Msa0215620:CDS | 50.0% | |
| ACCCGAGTTCAATCCCTAAC+TGG | - | chr2_1:60965723-60965742 | Msa0215620:intron | 50.0% | |
| TGGACTTCGACTGTGTGGTA+AGG | + | chr2_1:60965770-60965789 | None:intergenic | 50.0% | |
| !! | TGCTTTGTTTGGTTTGGCGG+TGG | - | chr2_1:60965799-60965818 | Msa0215620:intron | 50.0% |
| AGTTGATCGCGAAAAAGGCG+AGG | + | chr2_1:60966127-60966146 | None:intergenic | 50.0% | |
| ! | TACTGGTTAAGTGCAGGTCC+TGG | - | chr2_1:60966207-60966226 | Msa0215620:CDS | 50.0% |
| ACTGCGTAGAATGCAGGTGT+TGG | + | chr2_1:60966261-60966280 | None:intergenic | 50.0% | |
| AGGTGCCTTCATTGGTACAC+TGG | + | chr2_1:60966337-60966356 | None:intergenic | 50.0% | |
| ! | GCCCCAAAGTTGGTTGATCA+AGG | - | chr2_1:60966579-60966598 | Msa0215620:intron | 50.0% |
| GAGGTTGCAGTGGTCTCAGT+AGG | + | chr2_1:60964656-60964675 | None:intergenic | 55.0% | |
| ACTGAGACCACTGCAACCTC+TGG | - | chr2_1:60964656-60964675 | Msa0215620:CDS | 55.0% | |
| CAACTCACCAGAGGTTGCAG+TGG | + | chr2_1:60964666-60964685 | None:intergenic | 55.0% | |
| CACTGCAACCTCTGGTGAGT+TGG | - | chr2_1:60964664-60964683 | Msa0215620:CDS | 55.0% | |
| AAGGCAACCCAACTCACCAG+AGG | + | chr2_1:60964675-60964694 | None:intergenic | 55.0% | |
| CTGACACGACACTACGCATG+TGG | - | chr2_1:60965065-60965084 | Msa0215620:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 60964373 | 60967377 | 60964373 | ID=Msa0215620;Name=Msa0215620 |
| chr2_1 | mRNA | 60964373 | 60967377 | 60964373 | ID=Msa0215620-mRNA-1;Parent=Msa0215620;Name=Msa0215620-mRNA-1;_AED=0.05;_eAED=0.05;_QI=271|0.6|0.83|1|1|1|6|215|401 |
| chr2_1 | exon | 60964373 | 60964685 | 60964373 | ID=Msa0215620-mRNA-1:exon:16810;Parent=Msa0215620-mRNA-1 |
| chr2_1 | exon | 60965018 | 60965691 | 60965018 | ID=Msa0215620-mRNA-1:exon:16809;Parent=Msa0215620-mRNA-1 |
| chr2_1 | exon | 60965818 | 60965988 | 60965818 | ID=Msa0215620-mRNA-1:exon:16808;Parent=Msa0215620-mRNA-1 |
| chr2_1 | exon | 60966133 | 60966308 | 60966133 | ID=Msa0215620-mRNA-1:exon:16807;Parent=Msa0215620-mRNA-1 |
| chr2_1 | exon | 60966855 | 60966907 | 60966855 | ID=Msa0215620-mRNA-1:exon:16806;Parent=Msa0215620-mRNA-1 |
| chr2_1 | exon | 60967073 | 60967377 | 60967073 | ID=Msa0215620-mRNA-1:exon:16805;Parent=Msa0215620-mRNA-1 |
| chr2_1 | five_prime_UTR | 60967107 | 60967377 | 60967107 | ID=Msa0215620-mRNA-1:five_prime_utr;Parent=Msa0215620-mRNA-1 |
| chr2_1 | CDS | 60967073 | 60967106 | 60967073 | ID=Msa0215620-mRNA-1:cds;Parent=Msa0215620-mRNA-1 |
| chr2_1 | CDS | 60966855 | 60966907 | 60966855 | ID=Msa0215620-mRNA-1:cds;Parent=Msa0215620-mRNA-1 |
| chr2_1 | CDS | 60966133 | 60966308 | 60966133 | ID=Msa0215620-mRNA-1:cds;Parent=Msa0215620-mRNA-1 |
| chr2_1 | CDS | 60965818 | 60965988 | 60965818 | ID=Msa0215620-mRNA-1:cds;Parent=Msa0215620-mRNA-1 |
| chr2_1 | CDS | 60965018 | 60965691 | 60965018 | ID=Msa0215620-mRNA-1:cds;Parent=Msa0215620-mRNA-1 |
| chr2_1 | CDS | 60964588 | 60964685 | 60964588 | ID=Msa0215620-mRNA-1:cds;Parent=Msa0215620-mRNA-1 |
| chr2_1 | three_prime_UTR | 60964373 | 60964587 | 60964373 | ID=Msa0215620-mRNA-1:three_prime_utr;Parent=Msa0215620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
