AlfalfaGEDB | Msa0333680

M. sativa cultivar zhongmu-4 / Msa0333680

KEGG: K18482
GO: -
PFAM: PF01063.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333680	XP_013464651.1	97.674	344	8	0	1	344	1	344	0.0	691

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333680	sp\|Q8L493\|DAAA_ARATH	57.994	319	130	2	26	343	58	373	1.90e-127	372

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0038150	Msa0333680	-0.808371	3.200480e-50	-8.615850e-47
Msa0197170	Msa0333680	0.839153	1.878562e-57	-8.615850e-47
Msa0215620	Msa0333680	0.959150	3.988559e-117	-8.615850e-47
Msa0255770	Msa0333680	-0.806092	9.729519e-50	-8.615850e-47
Msa0308750	Msa0333680	0.800384	1.478206e-48	-8.615850e-47
Msa0316740	Msa0333680	0.804305	2.302337e-49	-8.615850e-47
Msa0333680	Msa0382020	-0.813118	3.008659e-51	-8.615850e-47
Msa0333680	Msa0405200	0.804685	1.918799e-49	-8.615850e-47
Msa0333680	Msa0424220	-0.800051	1.727621e-48	-8.615850e-47
Msa0333680	Msa0471130	-0.819075	1.404994e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333680	MtrunA17_Chr2g0316981	97.674	344	8	0	1	344	1	344	0.0	691
Msa0333680	MtrunA17_Chr1g0157721	58.642	324	127	3	26	343	60	382	1.69e-134	388
Msa0333680	MtrunA17_Chr1g0191561	23.194	263	184	7	70	323	281	534	2.19e-12	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0333680	AT5G57850.1	57.994	319	130	2	26	343	58	373	1.93e-128	372
Msa0333680	AT5G57850.2	60.135	296	117	1	49	343	1	296	5.26e-128	369
Msa0333680	AT3G05190.2	23.297	279	196	7	55	324	267	536	3.23e-14	73.9
Msa0333680	AT3G05190.3	23.297	279	196	7	55	324	267	536	3.23e-14	73.9
Msa0333680	AT3G05190.1	23.297	279	196	7	55	324	267	536	3.23e-14	73.9
Msa0333680	AT5G27410.4	22.535	284	192	8	55	324	176	445	2.43e-12	68.2
Msa0333680	AT5G27410.2	22.535	284	192	8	55	324	641	910	2.79e-12	68.6
Msa0333680	AT5G27410.1	22.535	284	192	8	55	324	264	533	3.56e-12	67.8

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Find 93 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGAAGGAATGGTGGTGG+TGG	0.592555	2_4:+51663749	None:intergenic
AAGGTGCATTTGGTTCTATA+TGG	0.376862	2_4:-51661869	Msa0333680:CDS
AAGTGCTACAAAGCAAGAGA+AGG	0.616157	2_4:+51663735	None:intergenic
AATCCCAATAGATGATCACA+TGG	0.675252	2_4:-51662744	Msa0333680:CDS
AATGAACCTACAAAATCATT+TGG	0.301492	2_4:-51661132	Msa0333680:three_prime_UTR
ACAAGTATTCTCTGTGTGTC+AGG	0.378962	2_4:+51661166	None:intergenic
ACACCTTGATCAACCAACTT+TGG	0.403764	2_4:+51661711	None:intergenic
ACAGAAGAACATGACAAAGG+TGG	0.672255	2_4:+51663800	None:intergenic
ACCTTGATCAACCAACTTTG+GGG	0.583923	2_4:+51661713	None:intergenic
ACTAATTTGCTTCACATAAA+AGG	0.197526	2_4:+51661019	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTGTTTGTTTGTTTAGGA+CGG	+	chr2_4:51661024-51661043	None:intergenic	30.0%
AATAGGATCACAAAAACTGA+AGG	+	chr2_4:51661259-51661278	None:intergenic	30.0%
ATGGTACTACAAAAAAGTGA+AGG	+	chr2_4:51661477-51661496	None:intergenic	30.0%
TACATAGTTCTTATTCCACT+AGG	+	chr2_4:51661552-51661571	None:intergenic	30.0%
GAATAAGAACTATGTAGCAT+CGG	-	chr2_4:51661556-51661575	Msa0333680:intron	30.0%
TCGGTAATGATTTGAGAAAA+TGG	+	chr2_4:51661841-51661860	None:intergenic	30.0%
ATTCAGTGCTTCAAAAGATA+AGG	-	chr2_4:51661896-51661915	Msa0333680:CDS	30.0%
TAGAAAAGCTTCATCAAACA+TGG	-	chr2_4:51662011-51662030	Msa0333680:CDS	30.0%
TATACACTAGAATACATAGC+TGG	+	chr2_4:51662061-51662080	None:intergenic	30.0%
GCTATGTATTCTAGTGTATA+TGG	-	chr2_4:51662061-51662080	Msa0333680:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	51660938	51663942	51660938	ID=Msa0333680;Name=Msa0333680
chr2_4	mRNA	51660938	51663942	51660938	ID=Msa0333680-mRNA-1;Parent=Msa0333680;Name=Msa0333680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=271\|1\|1\|1\|1\|1\|5\|215\|344
chr2_4	exon	51660938	51661250	51660938	ID=Msa0333680-mRNA-1:exon:15450;Parent=Msa0333680-mRNA-1
chr2_4	exon	51661583	51662256	51661583	ID=Msa0333680-mRNA-1:exon:15449;Parent=Msa0333680-mRNA-1
chr2_4	exon	51662698	51662873	51662698	ID=Msa0333680-mRNA-1:exon:15448;Parent=Msa0333680-mRNA-1
chr2_4	exon	51663420	51663472	51663420	ID=Msa0333680-mRNA-1:exon:15447;Parent=Msa0333680-mRNA-1
chr2_4	exon	51663638	51663942	51663638	ID=Msa0333680-mRNA-1:exon:15446;Parent=Msa0333680-mRNA-1
chr2_4	five_prime_UTR	51663672	51663942	51663672	ID=Msa0333680-mRNA-1:five_prime_utr;Parent=Msa0333680-mRNA-1
chr2_4	CDS	51663638	51663671	51663638	ID=Msa0333680-mRNA-1:cds;Parent=Msa0333680-mRNA-1
chr2_4	CDS	51663420	51663472	51663420	ID=Msa0333680-mRNA-1:cds;Parent=Msa0333680-mRNA-1
chr2_4	CDS	51662698	51662873	51662698	ID=Msa0333680-mRNA-1:cds;Parent=Msa0333680-mRNA-1
chr2_4	CDS	51661583	51662256	51661583	ID=Msa0333680-mRNA-1:cds;Parent=Msa0333680-mRNA-1
chr2_4	CDS	51661153	51661250	51661153	ID=Msa0333680-mRNA-1:cds;Parent=Msa0333680-mRNA-1
chr2_4	three_prime_UTR	51660938	51661152	51660938	ID=Msa0333680-mRNA-1:three_prime_utr;Parent=Msa0333680-mRNA-1

Gene Sequence

>Msa0333680

ATGGGGAACCCTACTGAGACCACTGCAACCTCTGAGATTGAAATTGATAATGATTTTAAAGTTCACGTGTTCTCTTCATCATCTGAGTTACTAGAAAAGCTTCATCAAACATGGAGTTCGGTGGAGAAACAACCATATCCAGCTATGTATTCTAGTGTATATGGAGGTATCATACTTGATCCAGCAATGATGGTAATCCCAATAGATGATCACATGGTACATAGAGGCCATGGCGTGTTTGATACTGCTATTATGTTTGAAGGACACCTCTATGAGTTGGATGTTCACCTTGACCGTTTCTTAAGATCAGCCTCAAAAGCAAAGATATCCTCGCCTTTTTCGCGATCAACTCTTCGCAGCATTCTAATACAACTAACGGCGGTATCAAAATTGAAGAAAGGAACTCTAAGATACTGGTTAAGTGCAGGTCCTGGAGATTTCTTACTGTCATCTTCAGGATGTCCAACACCTGCATTCTACGCAGTAGTCATTGATCATGATTTCTCTCAGTGCAAAGAAGGTGTCAAAGTGATTACTTCCAGTGTACCAATGAAGGCACCTTTATTTGCAACAATGAAAAATGTGAACTATCTTCCAAATGTACTTTCCGTATTAGAAGCTGAAGAGAAAGGTGCATTTGGTTCTATATGGATTGATGAGGTTGGTTATATTGCTGAAGGACCAAATGTGAATGTTGCTTTCATAACTCAAGAAAAGGAACTTGTTATGCCTTTTTTCGATAACATTCTATATGGTTGCACTGCTAAAAGGCTTCTTGAACTTGCCCCAAAGTTGGTTGATCAAGGTGTTCTAAAAAGTGTAACTACTAAAAATCTGACTGTGGATGAAGCTAGAGATGCTGTTGAAATGATGTATGTAGGAAGCACACTTCCTGTCTTGCCTATCATCATGTGGGATGATCAACCAATTGGTGATGGTAAGGTTGGAGAATTAACAATGTTACTTTCGGATTTGCTATGGGATGATATGGTAGCTGGCCCTGACACACAGAGAATACTTGTTCCTTATGTTTAA

Protein sequence

>Msa0333680

MGNPTETTATSEIEIDNDFKVHVFSSSSELLEKLHQTWSSVEKQPYPAMYSSVYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIMFEGHLYELDVHLDRFLRSASKAKISSPFSRSTLRSILIQLTAVSKLKKGTLRYWLSAGPGDFLLSSSGCPTPAFYAVVIDHDFSQCKEGVKVITSSVPMKAPLFATMKNVNYLPNVLSVLEAEEKGAFGSIWIDEVGYIAEGPNVNVAFITQEKELVMPFFDNILYGCTAKRLLELAPKLVDQGVLKSVTTKNLTVDEARDAVEMMYVGSTLPVLPIIMWDDQPIGDGKVGELTMLLSDLLWDDMVAGPDTQRILVPYV*