Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333680 | XP_013464651.1 | 97.674 | 344 | 8 | 0 | 1 | 344 | 1 | 344 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333680 | sp|Q8L493|DAAA_ARATH | 57.994 | 319 | 130 | 2 | 26 | 343 | 58 | 373 | 1.90e-127 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038150 | Msa0333680 | -0.808371 | 3.200480e-50 | -8.615850e-47 |
| Msa0197170 | Msa0333680 | 0.839153 | 1.878562e-57 | -8.615850e-47 |
| Msa0215620 | Msa0333680 | 0.959150 | 3.988559e-117 | -8.615850e-47 |
| Msa0255770 | Msa0333680 | -0.806092 | 9.729519e-50 | -8.615850e-47 |
| Msa0308750 | Msa0333680 | 0.800384 | 1.478206e-48 | -8.615850e-47 |
| Msa0316740 | Msa0333680 | 0.804305 | 2.302337e-49 | -8.615850e-47 |
| Msa0333680 | Msa0382020 | -0.813118 | 3.008659e-51 | -8.615850e-47 |
| Msa0333680 | Msa0405200 | 0.804685 | 1.918799e-49 | -8.615850e-47 |
| Msa0333680 | Msa0424220 | -0.800051 | 1.727621e-48 | -8.615850e-47 |
| Msa0333680 | Msa0471130 | -0.819075 | 1.404994e-52 | -8.615850e-47 |
| Msa0333680 | Msa0485210 | -0.801256 | 9.809151e-49 | -8.615850e-47 |
| Msa0333680 | Msa0662230 | -0.800465 | 1.422736e-48 | -8.615850e-47 |
| Msa0333680 | Msa0683150 | -0.805343 | 1.397668e-49 | -8.615850e-47 |
| Msa0333680 | Msa0734700 | 0.804392 | 2.208287e-49 | -8.615850e-47 |
| Msa0333680 | Msa0738460 | -0.822385 | 2.436425e-53 | -8.615850e-47 |
| Msa0333680 | Msa0788160 | -0.822726 | 2.030480e-53 | -8.615850e-47 |
| Msa0333680 | Msa0797180 | -0.800924 | 1.147089e-48 | -8.615850e-47 |
| Msa0333680 | Msa0801920 | -0.801853 | 7.402033e-49 | -8.615850e-47 |
| Msa0333680 | Msa0813610 | 0.806891 | 6.598376e-50 | -8.615850e-47 |
| Msa0333680 | Msa0817880 | -0.825465 | 4.619060e-54 | -8.615850e-47 |
| Msa0333680 | Msa0827340 | -0.810363 | 1.196447e-50 | -8.615850e-47 |
| Msa0333680 | Msa0835050 | -0.800464 | 1.423577e-48 | -8.615850e-47 |
| Msa0333680 | Msa0854230 | 0.838882 | 2.207676e-57 | -8.615850e-47 |
| Msa0333680 | Msa0864530 | -0.818954 | 1.496528e-52 | -8.615850e-47 |
| Msa0333680 | Msa0935840 | -0.809632 | 1.719213e-50 | -8.615850e-47 |
| Msa0333680 | Msa1028890 | -0.805392 | 1.364930e-49 | -8.615850e-47 |
| Msa0333680 | Msa1036260 | -0.809331 | 1.994687e-50 | -8.615850e-47 |
| Msa0333680 | Msa1156430 | -0.801396 | 9.185374e-49 | -8.615850e-47 |
| Msa0333680 | Msa1169600 | -0.811917 | 5.507328e-51 | -8.615850e-47 |
| Msa0333680 | Msa1201760 | 0.801400 | 9.168311e-49 | -8.615850e-47 |
| Msa0333680 | Msa1204900 | -0.807728 | 4.386158e-50 | -8.615850e-47 |
| Msa0333680 | Msa1256490 | -0.804110 | 2.527617e-49 | -8.615850e-47 |
| Msa0333680 | Msa1296810 | -0.804697 | 1.907796e-49 | -8.615850e-47 |
| Msa0333680 | Msa1301610 | -0.803322 | 3.684621e-49 | -8.615850e-47 |
| Msa0333680 | Msa1338600 | -0.805041 | 1.616218e-49 | -8.615850e-47 |
| Msa0333680 | Msa1379270 | -0.820581 | 6.360957e-53 | -8.615850e-47 |
| Msa0333680 | Msa1453540 | -0.801098 | 1.056708e-48 | -8.615850e-47 |
| Msa0333680 | Msa1463640 | 0.822663 | 2.099644e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333680 | MtrunA17_Chr2g0316981 | 97.674 | 344 | 8 | 0 | 1 | 344 | 1 | 344 | 0.0 | 691 |
| Msa0333680 | MtrunA17_Chr1g0157721 | 58.642 | 324 | 127 | 3 | 26 | 343 | 60 | 382 | 1.69e-134 | 388 |
| Msa0333680 | MtrunA17_Chr1g0191561 | 23.194 | 263 | 184 | 7 | 70 | 323 | 281 | 534 | 2.19e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333680 | AT5G57850.1 | 57.994 | 319 | 130 | 2 | 26 | 343 | 58 | 373 | 1.93e-128 | 372 |
| Msa0333680 | AT5G57850.2 | 60.135 | 296 | 117 | 1 | 49 | 343 | 1 | 296 | 5.26e-128 | 369 |
| Msa0333680 | AT3G05190.2 | 23.297 | 279 | 196 | 7 | 55 | 324 | 267 | 536 | 3.23e-14 | 73.9 |
| Msa0333680 | AT3G05190.3 | 23.297 | 279 | 196 | 7 | 55 | 324 | 267 | 536 | 3.23e-14 | 73.9 |
| Msa0333680 | AT3G05190.1 | 23.297 | 279 | 196 | 7 | 55 | 324 | 267 | 536 | 3.23e-14 | 73.9 |
| Msa0333680 | AT5G27410.4 | 22.535 | 284 | 192 | 8 | 55 | 324 | 176 | 445 | 2.43e-12 | 68.2 |
| Msa0333680 | AT5G27410.2 | 22.535 | 284 | 192 | 8 | 55 | 324 | 641 | 910 | 2.79e-12 | 68.6 |
| Msa0333680 | AT5G27410.1 | 22.535 | 284 | 192 | 8 | 55 | 324 | 264 | 533 | 3.56e-12 | 67.8 |
Find 93 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAATTTGCTTCACATAAA+AGG | 0.197526 | 2_4:+51661019 | None:intergenic |
| TATATGGTTGCACTGCTAAA+AGG | 0.283245 | 2_4:-51661749 | Msa0333680:CDS |
| AATGAACCTACAAAATCATT+TGG | 0.301492 | 2_4:-51661132 | Msa0333680:three_prime_UTR |
| TATTGTTTGTTTGTTTGTTT+AGG | 0.309251 | 2_4:+51663833 | None:intergenic |
| GCTATGTATTCTAGTGTATA+TGG | 0.321285 | 2_4:-51662797 | Msa0333680:CDS |
| TGTACCATGTGATCATCTAT+TGG | 0.330668 | 2_4:+51662740 | None:intergenic |
| GATTTCTTACTGTCATCTTC+AGG | 0.332881 | 2_4:-51662062 | Msa0333680:CDS |
| CGAAGAGTTGATCGCGAAAA+AGG | 0.334858 | 2_4:+51662164 | None:intergenic |
| GGATTTGCTATGGGATGATA+TGG | 0.343910 | 2_4:-51661197 | Msa0333680:CDS |
| CACCTTGATCAACCAACTTT+GGG | 0.358321 | 2_4:+51661712 | None:intergenic |
| GCAAATAAAGGTGCCTTCAT+TGG | 0.359777 | 2_4:+51661951 | None:intergenic |
| TCTAATACGGAAAGTACATT+TGG | 0.368821 | 2_4:+51661903 | None:intergenic |
| ATTGGGATTACCATCATTGC+TGG | 0.374631 | 2_4:+51662758 | None:intergenic |
| AAGGTGCATTTGGTTCTATA+TGG | 0.376862 | 2_4:-51661869 | Msa0333680:CDS |
| AGAATTAACAATGTTACTTT+CGG | 0.378886 | 2_4:-51661218 | Msa0333680:CDS |
| ACAAGTATTCTCTGTGTGTC+AGG | 0.378962 | 2_4:+51661166 | None:intergenic |
| ATGAAAGCAACATTCACATT+TGG | 0.387868 | 2_4:+51661816 | None:intergenic |
| ATGAACCTACAAAATCATTT+GGG | 0.390076 | 2_4:-51661131 | Msa0333680:three_prime_UTR |
| CTAGAATACATAGCTGGATA+TGG | 0.396785 | 2_4:+51662806 | None:intergenic |
| ACACCTTGATCAACCAACTT+TGG | 0.403764 | 2_4:+51661711 | None:intergenic |
| TTGTAGGTTCATTAAACATA+AGG | 0.405748 | 2_4:+51661142 | None:intergenic |
| TGATCATCCCACATGATGAT+AGG | 0.413305 | 2_4:+51661597 | None:intergenic |
| GTACCATGTGATCATCTATT+GGG | 0.414603 | 2_4:+51662741 | None:intergenic |
| GATACTGCTATTATGTTTGA+AGG | 0.421904 | 2_4:-51662698 | Msa0333680:CDS |
| GCTGAAGAGAAAGGTGCATT+TGG | 0.425574 | 2_4:-51661879 | Msa0333680:CDS |
| TTTCTCTTCAGCTTCTAATA+CGG | 0.429071 | 2_4:+51661890 | None:intergenic |
| TGTTACTTTCGGATTTGCTA+TGG | 0.443052 | 2_4:-51661207 | Msa0333680:CDS |
| TCAATACAACAAGGAACATA+AGG | 0.447130 | 2_4:+51661098 | None:intergenic |
| AGAAAGGAACTCTAAGATAC+TGG | 0.447947 | 2_4:-51662103 | Msa0333680:CDS |
| GTTTGTTTGTTTGTTTAGGA+CGG | 0.454083 | 2_4:+51663837 | None:intergenic |
| CAACAAAATGAAACAGTTCA+AGG | 0.457032 | 2_4:+51660996 | None:intergenic |
| GCCCCAAAGTTGGTTGATCA+AGG | 0.457467 | 2_4:-51661714 | Msa0333680:CDS |
| ATTAACTTACCATCACCAAT+TGG | 0.463704 | 2_4:+51661573 | None:intergenic |
| CATACTTGATCCAGCAATGA+TGG | 0.467941 | 2_4:-51662768 | Msa0333680:CDS |
| TCTTGAACTTGCCCCAAAGT+TGG | 0.471833 | 2_4:-51661724 | Msa0333680:CDS |
| TGCTTTCATAACTCAAGAAA+AGG | 0.478668 | 2_4:-51661802 | Msa0333680:CDS |
| CTCAAGACACCTCTATGAGT+TGG | 0.480888 | 2_4:-51662240 | Msa0333680:intron |
| TATGTTATTACAGGTAAGGT+TGG | 0.487438 | 2_4:-51661241 | Msa0333680:intron |
| TACTGGTTAAGTGCAGGTCC+TGG | 0.488263 | 2_4:-51662086 | Msa0333680:CDS |
| CTATGGGATGATATGGTAGC+TGG | 0.500347 | 2_4:-51661190 | Msa0333680:CDS |
| TCTATATGGATTGATGAGGT+TGG | 0.504339 | 2_4:-51661855 | Msa0333680:CDS |
| GCTTCATCAAACATGGAGTT+CGG | 0.504869 | 2_4:-51662840 | Msa0333680:CDS |
| GTTACTTTCGGATTTGCTAT+GGG | 0.509505 | 2_4:-51661206 | Msa0333680:CDS |
| CTGTCTTGCCTATCATCATG+TGG | 0.512259 | 2_4:-51661605 | Msa0333680:CDS |
| ATTATCATAATGACGAAAGA+TGG | 0.514851 | 2_4:-51663919 | Msa0333680:five_prime_UTR |
| TACTTCCAGTGTACCAATGA+AGG | 0.515569 | 2_4:-51661964 | Msa0333680:CDS |
| GTGATATAGTAATTGATAGC+AGG | 0.520750 | 2_4:+51663771 | None:intergenic |
| ACTGAGACCACTGCAACCTC+TGG | 0.521559 | 2_4:-51663637 | Msa0333680:intron |
| GAGGTTGCAGTGGTCTCAGT+AGG | 0.525496 | 2_4:+51663640 | None:intergenic |
| CACATGATGATAGGCAAGAC+AGG | 0.530752 | 2_4:+51661606 | None:intergenic |
| CGTGTTCTCTTCATCATCTG+AGG | 0.533298 | 2_4:-51663419 | Msa0333680:intron |
| GATTTCTCTCAGTGCAAAGA+AGG | 0.541297 | 2_4:-51661999 | Msa0333680:CDS |
| GATGACAGTAAGAAATCTCC+AGG | 0.544571 | 2_4:+51662068 | None:intergenic |
| TTGAGGCTGATCTTAAGAAA+CGG | 0.550222 | 2_4:+51662204 | None:intergenic |
| ATACTGCTATTATGTTTGAA+GGG | 0.551151 | 2_4:-51662697 | Msa0333680:intron |
| GCGGTATCAAAATTGAAGAA+AGG | 0.557986 | 2_4:-51662119 | Msa0333680:CDS |
| CTAAGATACTGGTTAAGTGC+AGG | 0.560722 | 2_4:-51662092 | Msa0333680:CDS |
| ATGACTACTGCGTAGAATGC+AGG | 0.561557 | 2_4:+51662029 | None:intergenic |
| AGGTTGCAGTGGTCTCAGTA+GGG | 0.572433 | 2_4:+51663641 | None:intergenic |
| TATACACTAGAATACATAGC+TGG | 0.574410 | 2_4:+51662800 | None:intergenic |
| AGGTGCCTTCATTGGTACAC+TGG | 0.574750 | 2_4:+51661959 | None:intergenic |
| CTACAAAGCAAGAGAAGGAA+TGG | 0.578037 | 2_4:+51663740 | None:intergenic |
| GCTGTTGAAATGATGTATGT+AGG | 0.580482 | 2_4:-51661639 | Msa0333680:CDS |
| ATGTGGGATGATCAACCAAT+TGG | 0.582385 | 2_4:-51661588 | Msa0333680:CDS |
| CACATGGTACATAGAGGCCA+TGG | 0.583140 | 2_4:-51662728 | Msa0333680:CDS |
| ACCTTGATCAACCAACTTTG+GGG | 0.583923 | 2_4:+51661713 | None:intergenic |
| CAGCATTCTAATACAACTAA+CGG | 0.586750 | 2_4:-51662141 | Msa0333680:CDS |
| GTATTAGAAGCTGAAGAGAA+AGG | 0.586831 | 2_4:-51661888 | Msa0333680:CDS |
| ACTGCGTAGAATGCAGGTGT+TGG | 0.589080 | 2_4:+51662035 | None:intergenic |
| AAGAGAAGGAATGGTGGTGG+TGG | 0.592555 | 2_4:+51663749 | None:intergenic |
| TAGAAAAGCTTCATCAAACA+TGG | 0.598481 | 2_4:-51662847 | Msa0333680:CDS |
| GGTGAACATCCAACTCATAG+AGG | 0.601894 | 2_4:+51662231 | None:intergenic |
| TGTCTTGCCTATCATCATGT+GGG | 0.602668 | 2_4:-51661604 | Msa0333680:CDS |
| GATGATCACATGGTACATAG+AGG | 0.611347 | 2_4:-51662734 | Msa0333680:CDS |
| CAAGTATTCTCTGTGTGTCA+GGG | 0.611968 | 2_4:+51661167 | None:intergenic |
| AAGTGCTACAAAGCAAGAGA+AGG | 0.616157 | 2_4:+51663735 | None:intergenic |
| AGCAAGAGAAGGAATGGTGG+TGG | 0.618774 | 2_4:+51663746 | None:intergenic |
| ATCATAATGACGAAAGATGG+TGG | 0.623788 | 2_4:-51663916 | Msa0333680:five_prime_UTR |
| CATTGTAAATCAATACAACA+AGG | 0.626622 | 2_4:+51661089 | None:intergenic |
| TAGCAGTATCAAACACGCCA+TGG | 0.630664 | 2_4:+51662711 | None:intergenic |
| TGGTTCTATATGGATTGATG+AGG | 0.634951 | 2_4:-51661859 | Msa0333680:CDS |
| GAGGTTGGTTATATTGCTGA+AGG | 0.635904 | 2_4:-51661840 | Msa0333680:CDS |
| TCATCAAACATGGAGTTCGG+TGG | 0.644411 | 2_4:-51662837 | Msa0333680:CDS |
| CAACTCACCAGAGGTTGCAG+TGG | 0.666043 | 2_4:+51663630 | None:intergenic |
| GATGATCAACCAATTGGTGA+TGG | 0.668433 | 2_4:-51661582 | Msa0333680:intron |
| CTGATCTTAAGAAACGGTCA+AGG | 0.670298 | 2_4:+51662210 | None:intergenic |
| ACAGAAGAACATGACAAAGG+TGG | 0.672255 | 2_4:+51663800 | None:intergenic |
| AATCCCAATAGATGATCACA+TGG | 0.675252 | 2_4:-51662744 | Msa0333680:CDS |
| CAAAGCAAGAGAAGGAATGG+TGG | 0.675306 | 2_4:+51663743 | None:intergenic |
| AGAACAGAAGAACATGACAA+AGG | 0.683986 | 2_4:+51663797 | None:intergenic |
| ATGTATTCTAGTGTATATGG+AGG | 0.687618 | 2_4:-51662794 | Msa0333680:CDS |
| CATTCTAATACAACTAACGG+CGG | 0.748431 | 2_4:-51662138 | Msa0333680:CDS |
| GCACTTCACAAAGTACACAG+TGG | 0.777823 | 2_4:-51663718 | Msa0333680:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGTTTCAAATTAGAAT+AGG | + | chr2_4:51661276-51661295 | None:intergenic | 15.0% |
| !!! | ATTCTAATTTGAAACTTTAA+TGG | - | chr2_4:51661276-51661295 | Msa0333680:intron | 15.0% |
| !! | ATTCTATCATTATTATAAGA+TGG | + | chr2_4:51661496-51661515 | None:intergenic | 15.0% |
| !!! | TTTTGATGTTGTTATACAAT+TGG | + | chr2_4:51660971-51660990 | None:intergenic | 20.0% |
| !! | TATTGTTTGTTTGTTTGTTT+AGG | + | chr2_4:51661028-51661047 | None:intergenic | 20.0% |
| !!! | TGAATTTTTTCTTTACTTCA+TGG | - | chr2_4:51661190-51661209 | Msa0333680:CDS | 20.0% |
| !!! | GAATTTTTTCTTTACTTCAT+GGG | - | chr2_4:51661191-51661210 | Msa0333680:CDS | 20.0% |
| !!! | AATTTTTTCTTTACTTCATG+GGG | - | chr2_4:51661192-51661211 | Msa0333680:CDS | 20.0% |
| !!! | TGTTCTTATTGTATATGTTT+TGG | - | chr2_4:51661354-51661373 | Msa0333680:intron | 20.0% |
| !!! | AAGCTTTATTAAATCAAAAG+TGG | - | chr2_4:51662216-51662235 | Msa0333680:CDS | 20.0% |
| !! | TTTATTAAATCAAAAGTGGT+TGG | - | chr2_4:51662220-51662239 | Msa0333680:CDS | 20.0% |
| !! | ACTAAAAATTATTCCAGTTA+GGG | + | chr2_4:51662304-51662323 | None:intergenic | 20.0% |
| !! | GAGTTAAAAAAATGCATTAT+TGG | - | chr2_4:51662539-51662558 | Msa0333680:intron | 20.0% |
| !!! | TTTTTCATTGTTGCAAATAA+AGG | + | chr2_4:51662922-51662941 | None:intergenic | 20.0% |
| !! | TATAGAATGTTATCGAAAAA+AGG | + | chr2_4:51663093-51663112 | None:intergenic | 20.0% |
| !!! | TTTTTCGATAACATTCTATA+TGG | - | chr2_4:51663093-51663112 | Msa0333680:intron | 20.0% |
| !! | TAAGTAAAAAATAATTGGGA+CGG | + | chr2_4:51663496-51663515 | None:intergenic | 20.0% |
| !!! | AGAATTAACAATGTTACTTT+CGG | - | chr2_4:51663640-51663659 | Msa0333680:CDS | 20.0% |
| ! | ATTATCATAATGACGAAAGA+TGG | - | chr2_4:51660939-51660958 | Msa0333680:three_prime_UTR | 25.0% |
| !! | TGCTTTACTAGTTCATATTT+TGG | - | chr2_4:51661302-51661321 | Msa0333680:intron | 25.0% |
| !! | GCTAAATTTCTTTTCTTTCT+TGG | - | chr2_4:51661376-51661395 | Msa0333680:intron | 25.0% |
| ! | GAATAAGAATTATGTTGCAT+CGG | - | chr2_4:51661731-51661750 | Msa0333680:CDS | 25.0% |
| ! | TATGACACTTAACACTAAAA+CGG | + | chr2_4:51661877-51661896 | None:intergenic | 25.0% |
| ! | TTAAAGTTTGCAAGTTTCAT+TGG | - | chr2_4:51661969-51661988 | Msa0333680:CDS | 25.0% |
| ! | ATACTGCTATTATGTTTGAA+GGG | - | chr2_4:51662161-51662180 | Msa0333680:CDS | 25.0% |
| !! | AAGTAGTTAAGCTTTAGTTA+AGG | - | chr2_4:51662247-51662266 | Msa0333680:intron | 25.0% |
| ! | GACTAAAAATTATTCCAGTT+AGG | + | chr2_4:51662305-51662324 | None:intergenic | 25.0% |
| !! | TTCATATCGATTAAGCTTAA+AGG | + | chr2_4:51663360-51663379 | None:intergenic | 25.0% |
| ! | ATAAGATTCAATTCACGATT+CGG | - | chr2_4:51663559-51663578 | Msa0333680:intron | 25.0% |
| ! | TTGATTGTCTATGTTATTAC+AGG | - | chr2_4:51663608-51663627 | Msa0333680:intron | 25.0% |
| ! | TTGTAGGTTCATTAAACATA+AGG | + | chr2_4:51663719-51663738 | None:intergenic | 25.0% |
| ! | AATGAACCTACAAAATCATT+TGG | - | chr2_4:51663726-51663745 | Msa0333680:five_prime_UTR | 25.0% |
| ! | ATGAACCTACAAAATCATTT+GGG | - | chr2_4:51663727-51663746 | Msa0333680:five_prime_UTR | 25.0% |
| ! | CATTGTAAATCAATACAACA+AGG | + | chr2_4:51663772-51663791 | None:intergenic | 25.0% |
| !!! | ACTAATTTGCTTCACATAAA+AGG | + | chr2_4:51663842-51663861 | None:intergenic | 25.0% |
| GTTTGTTTGTTTGTTTAGGA+CGG | + | chr2_4:51661024-51661043 | None:intergenic | 30.0% | |
| ! | GTGATATAGTAATTGATAGC+AGG | + | chr2_4:51661090-51661109 | None:intergenic | 30.0% |
| AATAGGATCACAAAAACTGA+AGG | + | chr2_4:51661259-51661278 | None:intergenic | 30.0% | |
| ATGGTACTACAAAAAAGTGA+AGG | + | chr2_4:51661477-51661496 | None:intergenic | 30.0% | |
| TACATAGTTCTTATTCCACT+AGG | + | chr2_4:51661552-51661571 | None:intergenic | 30.0% | |
| GAATAAGAACTATGTAGCAT+CGG | - | chr2_4:51661556-51661575 | Msa0333680:intron | 30.0% | |
| !! | CTTCATTTTGAAAATGTCTC+TGG | - | chr2_4:51661581-51661600 | Msa0333680:intron | 30.0% |
| TCGGTAATGATTTGAGAAAA+TGG | + | chr2_4:51661841-51661860 | None:intergenic | 30.0% | |
| ATTCAGTGCTTCAAAAGATA+AGG | - | chr2_4:51661896-51661915 | Msa0333680:CDS | 30.0% | |
| TAGAAAAGCTTCATCAAACA+TGG | - | chr2_4:51662011-51662030 | Msa0333680:CDS | 30.0% | |
| TATACACTAGAATACATAGC+TGG | + | chr2_4:51662061-51662080 | None:intergenic | 30.0% | |
| GCTATGTATTCTAGTGTATA+TGG | - | chr2_4:51662061-51662080 | Msa0333680:CDS | 30.0% | |
| ATGTATTCTAGTGTATATGG+AGG | - | chr2_4:51662064-51662083 | Msa0333680:CDS | 30.0% | |
| GATACTGCTATTATGTTTGA+AGG | - | chr2_4:51662160-51662179 | Msa0333680:CDS | 30.0% | |
| AACTAAAGCTTAACTACTTC+AGG | + | chr2_4:51662246-51662265 | None:intergenic | 30.0% | |
| TTAGTTAAGGTTGAATCACT+TGG | - | chr2_4:51662260-51662279 | Msa0333680:intron | 30.0% | |
| TAGTTAAGGTTGAATCACTT+GGG | - | chr2_4:51662261-51662280 | Msa0333680:intron | 30.0% | |
| CAAACAAAGCAAGAATAATC+TGG | + | chr2_4:51662355-51662374 | None:intergenic | 30.0% | |
| ! | CAGATTATTCTTGCTTTGTT+TGG | - | chr2_4:51662353-51662372 | Msa0333680:intron | 30.0% |
| !! | TATTCTTGCTTTGTTTGGTT+TGG | - | chr2_4:51662358-51662377 | Msa0333680:intron | 30.0% |
| GTTTGGATAAAAGTTACGAA+TGG | + | chr2_4:51662476-51662495 | None:intergenic | 30.0% | |
| ! | TTCGTAACTTTTATCCAAAC+AGG | - | chr2_4:51662476-51662495 | Msa0333680:intron | 30.0% |
| TTAACTCTACAGTTCCTATA+GGG | + | chr2_4:51662526-51662545 | None:intergenic | 30.0% | |
| TTTAACTCTACAGTTCCTAT+AGG | + | chr2_4:51662527-51662546 | None:intergenic | 30.0% | |
| CAGCATTCTAATACAACTAA+CGG | - | chr2_4:51662717-51662736 | Msa0333680:CDS | 30.0% | |
| ! | TCTAATACGGAAAGTACATT+TGG | + | chr2_4:51662958-51662977 | None:intergenic | 30.0% |
| TTTCTCTTCAGCTTCTAATA+CGG | + | chr2_4:51662971-51662990 | None:intergenic | 30.0% | |
| ATGAAAGCAACATTCACATT+TGG | + | chr2_4:51663045-51663064 | None:intergenic | 30.0% | |
| TGCTTTCATAACTCAAGAAA+AGG | - | chr2_4:51663056-51663075 | Msa0333680:intron | 30.0% | |
| AACTACTAAAAATCTGACTG+TGG | - | chr2_4:51663182-51663201 | Msa0333680:intron | 30.0% | |
| ATTAACTTACCATCACCAAT+TGG | + | chr2_4:51663288-51663307 | None:intergenic | 30.0% | |
| !! | AATTGGTGATGGTAAGTTAA+TGG | - | chr2_4:51663287-51663306 | Msa0333680:intron | 30.0% |
| TGTGTATATCTATCCTTGTT+TGG | - | chr2_4:51663321-51663340 | Msa0333680:intron | 30.0% | |
| TGTCTATGTTATTACAGGTA+AGG | - | chr2_4:51663613-51663632 | Msa0333680:intron | 30.0% | |
| TATGTTATTACAGGTAAGGT+TGG | - | chr2_4:51663617-51663636 | Msa0333680:intron | 30.0% | |
| ! | GTATTCCCAAATGATTTTGT+AGG | + | chr2_4:51663735-51663754 | None:intergenic | 30.0% |
| TCAATACAACAAGGAACATA+AGG | + | chr2_4:51663763-51663782 | None:intergenic | 30.0% | |
| CAACAAAATGAAACAGTTCA+AGG | + | chr2_4:51663865-51663884 | None:intergenic | 30.0% | |
| ATCATAATGACGAAAGATGG+TGG | - | chr2_4:51660942-51660961 | Msa0333680:three_prime_UTR | 35.0% | |
| AGAACAGAAGAACATGACAA+AGG | + | chr2_4:51661064-51661083 | None:intergenic | 35.0% | |
| AAGTCAGCTATATGTATCGA+AGG | + | chr2_4:51661527-51661546 | None:intergenic | 35.0% | |
| ! | ATATAGCTGACTTTACCTAG+TGG | - | chr2_4:51661534-51661553 | Msa0333680:intron | 35.0% |
| CTAGAATACATAGCTGGATA+TGG | + | chr2_4:51662055-51662074 | None:intergenic | 35.0% | |
| AATCCCAATAGATGATCACA+TGG | - | chr2_4:51662114-51662133 | Msa0333680:CDS | 35.0% | |
| GTACCATGTGATCATCTATT+GGG | + | chr2_4:51662120-51662139 | None:intergenic | 35.0% | |
| TGTACCATGTGATCATCTAT+TGG | + | chr2_4:51662121-51662140 | None:intergenic | 35.0% | |
| AGTTAAGGTTGAATCACTTG+GGG | - | chr2_4:51662262-51662281 | Msa0333680:intron | 35.0% | |
| CATAAATCATAGTGCCTGTT+TGG | + | chr2_4:51662493-51662512 | None:intergenic | 35.0% | |
| TAACTCTACAGTTCCTATAG+GGG | + | chr2_4:51662525-51662544 | None:intergenic | 35.0% | |
| TTGAGGCTGATCTTAAGAAA+CGG | + | chr2_4:51662657-51662676 | None:intergenic | 35.0% | |
| CATTCTAATACAACTAACGG+CGG | - | chr2_4:51662720-51662739 | Msa0333680:CDS | 35.0% | |
| GCGGTATCAAAATTGAAGAA+AGG | - | chr2_4:51662739-51662758 | Msa0333680:CDS | 35.0% | |
| !! | AGAAAGGAACTCTAAGATAC+TGG | - | chr2_4:51662755-51662774 | Msa0333680:CDS | 35.0% |
| GATTTCTTACTGTCATCTTC+AGG | - | chr2_4:51662796-51662815 | Msa0333680:CDS | 35.0% | |
| GTATTAGAAGCTGAAGAGAA+AGG | - | chr2_4:51662970-51662989 | Msa0333680:intron | 35.0% | |
| !! | AAGGTGCATTTGGTTCTATA+TGG | - | chr2_4:51662989-51663008 | Msa0333680:intron | 35.0% |
| ! | TGGTTCTATATGGATTGATG+AGG | - | chr2_4:51662999-51663018 | Msa0333680:intron | 35.0% |
| ! | TCTATATGGATTGATGAGGT+TGG | - | chr2_4:51663003-51663022 | Msa0333680:intron | 35.0% |
| TATATGGTTGCACTGCTAAA+AGG | - | chr2_4:51663109-51663128 | Msa0333680:intron | 35.0% | |
| GCTGTTGAAATGATGTATGT+AGG | - | chr2_4:51663219-51663238 | Msa0333680:intron | 35.0% | |
| TTAATGCTTCATGCCAAACA+AGG | + | chr2_4:51663337-51663356 | None:intergenic | 35.0% | |
| ! | CAATTCACGATTCGGAAAAT+AGG | - | chr2_4:51663567-51663586 | Msa0333680:intron | 35.0% |
| !! | TGTTACTTTCGGATTTGCTA+TGG | - | chr2_4:51663651-51663670 | Msa0333680:CDS | 35.0% |
| !! | GTTACTTTCGGATTTGCTAT+GGG | - | chr2_4:51663652-51663671 | Msa0333680:CDS | 35.0% |
| ACAGAAGAACATGACAAAGG+TGG | + | chr2_4:51661061-51661080 | None:intergenic | 40.0% | |
| CTACAAAGCAAGAGAAGGAA+TGG | + | chr2_4:51661121-51661140 | None:intergenic | 40.0% | |
| AAGTGCTACAAAGCAAGAGA+AGG | + | chr2_4:51661126-51661145 | None:intergenic | 40.0% | |
| TGTCGTGTCAGTGTCAAATA+AGG | + | chr2_4:51661621-51661640 | None:intergenic | 40.0% | |
| ! | ATGTAGCTGACTTCACATAG+TGG | - | chr2_4:51661709-51661728 | Msa0333680:CDS | 40.0% |
| !!! | CTTCATTTTGGAAGTGTCTC+TGG | - | chr2_4:51661756-51661775 | Msa0333680:CDS | 40.0% |
| AAACGGTAACACGTAGACAT+CGG | + | chr2_4:51661860-51661879 | None:intergenic | 40.0% | |
| GCTTCATCAAACATGGAGTT+CGG | - | chr2_4:51662018-51662037 | Msa0333680:CDS | 40.0% | |
| CATACTTGATCCAGCAATGA+TGG | - | chr2_4:51662090-51662109 | Msa0333680:CDS | 40.0% | |
| ATTGGGATTACCATCATTGC+TGG | + | chr2_4:51662103-51662122 | None:intergenic | 40.0% | |
| GATGATCACATGGTACATAG+AGG | - | chr2_4:51662124-51662143 | Msa0333680:CDS | 40.0% | |
| TTCCAGTTAGGGATTGAACT+CGG | + | chr2_4:51662293-51662312 | None:intergenic | 40.0% | |
| !! | TCTTGCTTTGTTTGGTTTGG+CGG | - | chr2_4:51662361-51662380 | Msa0333680:intron | 40.0% |
| TCTCAGCTTCAAGAAAGTCA+CGG | + | chr2_4:51662423-51662442 | None:intergenic | 40.0% | |
| ACAGTTCCTATAGGGGAAAA+GGG | + | chr2_4:51662518-51662537 | None:intergenic | 40.0% | |
| TACAGTTCCTATAGGGGAAA+AGG | + | chr2_4:51662519-51662538 | None:intergenic | 40.0% | |
| CTGATCTTAAGAAACGGTCA+AGG | + | chr2_4:51662651-51662670 | None:intergenic | 40.0% | |
| !! | CGAGGATATCTTTGCTTTTG+AGG | + | chr2_4:51662674-51662693 | None:intergenic | 40.0% |
| ! | CTAAGATACTGGTTAAGTGC+AGG | - | chr2_4:51662766-51662785 | Msa0333680:CDS | 40.0% |
| GATGACAGTAAGAAATCTCC+AGG | + | chr2_4:51662793-51662812 | None:intergenic | 40.0% | |
| GATTTCTCTCAGTGCAAAGA+AGG | - | chr2_4:51662859-51662878 | Msa0333680:intron | 40.0% | |
| TACTTCCAGTGTACCAATGA+AGG | - | chr2_4:51662894-51662913 | Msa0333680:intron | 40.0% | |
| !! | GCAAATAAAGGTGCCTTCAT+TGG | + | chr2_4:51662910-51662929 | None:intergenic | 40.0% |
| ! | GAGGTTGGTTATATTGCTGA+AGG | - | chr2_4:51663018-51663037 | Msa0333680:intron | 40.0% |
| ACCTTGATCAACCAACTTTG+GGG | + | chr2_4:51663148-51663167 | None:intergenic | 40.0% | |
| CACCTTGATCAACCAACTTT+GGG | + | chr2_4:51663149-51663168 | None:intergenic | 40.0% | |
| ACACCTTGATCAACCAACTT+TGG | + | chr2_4:51663150-51663169 | None:intergenic | 40.0% | |
| TGTCTTGCCTATCATCATGT+GGG | - | chr2_4:51663254-51663273 | Msa0333680:intron | 40.0% | |
| TGATCATCCCACATGATGAT+AGG | + | chr2_4:51663264-51663283 | None:intergenic | 40.0% | |
| ATGTGGGATGATCAACCAAT+TGG | - | chr2_4:51663270-51663289 | Msa0333680:intron | 40.0% | |
| GATGATCAACCAATTGGTGA+TGG | - | chr2_4:51663276-51663295 | Msa0333680:intron | 40.0% | |
| !! | GGATTTGCTATGGGATGATA+TGG | - | chr2_4:51663661-51663680 | Msa0333680:exon | 40.0% |
| CAAGTATTCTCTGTGTGTCA+GGG | + | chr2_4:51663694-51663713 | None:intergenic | 40.0% | |
| ACAAGTATTCTCTGTGTGTC+AGG | + | chr2_4:51663695-51663714 | None:intergenic | 40.0% | |
| CAAAGCAAGAGAAGGAATGG+TGG | + | chr2_4:51661118-51661137 | None:intergenic | 45.0% | |
| GCACTTCACAAAGTACACAG+TGG | - | chr2_4:51661140-51661159 | Msa0333680:exon | 45.0% | |
| CGTGTTCTCTTCATCATCTG+AGG | - | chr2_4:51661439-51661458 | Msa0333680:intron | 45.0% | |
| !! | GTTGCATCGGCACTTCATTT+TGG | - | chr2_4:51661744-51661763 | Msa0333680:CDS | 45.0% |
| TCATCAAACATGGAGTTCGG+TGG | - | chr2_4:51662021-51662040 | Msa0333680:CDS | 45.0% | |
| TAGCAGTATCAAACACGCCA+TGG | + | chr2_4:51662150-51662169 | None:intergenic | 45.0% | |
| TCCAGTTAGGGATTGAACTC+GGG | + | chr2_4:51662292-51662311 | None:intergenic | 45.0% | |
| TAATCTGGACTTCGACTGTG+TGG | + | chr2_4:51662340-51662359 | None:intergenic | 45.0% | |
| TGCATTGGGAAGCGAGAATT+GGG | + | chr2_4:51662393-51662412 | None:intergenic | 45.0% | |
| ATGCATTGGGAAGCGAGAAT+TGG | + | chr2_4:51662394-51662413 | None:intergenic | 45.0% | |
| GTCACGGCAAATCATGCATT+GGG | + | chr2_4:51662407-51662426 | None:intergenic | 45.0% | |
| AGTCACGGCAAATCATGCAT+TGG | + | chr2_4:51662408-51662427 | None:intergenic | 45.0% | |
| ! | AGTTAGACTTGCCGTGCTTT+TGG | - | chr2_4:51662450-51662469 | Msa0333680:intron | 45.0% |
| GTTACGAATGGCCAAAAGCA+CGG | + | chr2_4:51662464-51662483 | None:intergenic | 45.0% | |
| ! | TATGTGCCCTTTTCCCCTAT+AGG | - | chr2_4:51662509-51662528 | Msa0333680:intron | 45.0% |
| CTCAAGACACCTCTATGAGT+TGG | - | chr2_4:51662618-51662637 | Msa0333680:intron | 45.0% | |
| GGTGAACATCCAACTCATAG+AGG | + | chr2_4:51662630-51662649 | None:intergenic | 45.0% | |
| ! | CGAAGAGTTGATCGCGAAAA+AGG | + | chr2_4:51662697-51662716 | None:intergenic | 45.0% |
| ATGACTACTGCGTAGAATGC+AGG | + | chr2_4:51662832-51662851 | None:intergenic | 45.0% | |
| ! | GCTGAAGAGAAAGGTGCATT+TGG | - | chr2_4:51662979-51662998 | Msa0333680:intron | 45.0% |
| TCTTGAACTTGCCCCAAAGT+TGG | - | chr2_4:51663134-51663153 | Msa0333680:intron | 45.0% | |
| CACATGATGATAGGCAAGAC+AGG | + | chr2_4:51663255-51663274 | None:intergenic | 45.0% | |
| CTGTCTTGCCTATCATCATG+TGG | - | chr2_4:51663253-51663272 | Msa0333680:intron | 45.0% | |
| CTATGGGATGATATGGTAGC+TGG | - | chr2_4:51663668-51663687 | Msa0333680:exon | 45.0% | |
| !!! | TTTTTAAGTAAAAAATAATT+GGG | + | chr2_4:51663500-51663519 | None:intergenic | 5.0% |
| !!! | ATTTTTAAGTAAAAAATAAT+TGG | + | chr2_4:51663501-51663520 | None:intergenic | 5.0% |
| !! | AAGAGAAGGAATGGTGGTGG+TGG | + | chr2_4:51661112-51661131 | None:intergenic | 50.0% |
| AGCAAGAGAAGGAATGGTGG+TGG | + | chr2_4:51661115-51661134 | None:intergenic | 50.0% | |
| AGGTTGCAGTGGTCTCAGTA+GGG | + | chr2_4:51661220-51661239 | None:intergenic | 50.0% | |
| ACTGCAACCTCTGGTGAGTT+GGG | - | chr2_4:51661230-51661249 | Msa0333680:CDS | 50.0% | |
| CACATGGTACATAGAGGCCA+TGG | - | chr2_4:51662130-51662149 | Msa0333680:CDS | 50.0% | |
| ACCCGAGTTCAATCCCTAAC+TGG | - | chr2_4:51662288-51662307 | Msa0333680:intron | 50.0% | |
| TGGACTTCGACTGTGTGGTA+AGG | + | chr2_4:51662335-51662354 | None:intergenic | 50.0% | |
| !! | TGCTTTGTTTGGTTTGGCGG+TGG | - | chr2_4:51662364-51662383 | Msa0333680:intron | 50.0% |
| AGTTGATCGCGAAAAAGGCG+AGG | + | chr2_4:51662692-51662711 | None:intergenic | 50.0% | |
| ! | TACTGGTTAAGTGCAGGTCC+TGG | - | chr2_4:51662772-51662791 | Msa0333680:CDS | 50.0% |
| ACTGCGTAGAATGCAGGTGT+TGG | + | chr2_4:51662826-51662845 | None:intergenic | 50.0% | |
| AGGTGCCTTCATTGGTACAC+TGG | + | chr2_4:51662902-51662921 | None:intergenic | 50.0% | |
| ! | GCCCCAAAGTTGGTTGATCA+AGG | - | chr2_4:51663144-51663163 | Msa0333680:intron | 50.0% |
| GAGGTTGCAGTGGTCTCAGT+AGG | + | chr2_4:51661221-51661240 | None:intergenic | 55.0% | |
| ACTGAGACCACTGCAACCTC+TGG | - | chr2_4:51661221-51661240 | Msa0333680:CDS | 55.0% | |
| CAACTCACCAGAGGTTGCAG+TGG | + | chr2_4:51661231-51661250 | None:intergenic | 55.0% | |
| CACTGCAACCTCTGGTGAGT+TGG | - | chr2_4:51661229-51661248 | Msa0333680:CDS | 55.0% | |
| AAGGCAACCCAACTCACCAG+AGG | + | chr2_4:51661240-51661259 | None:intergenic | 55.0% | |
| CTGACACGACACTACGCATG+TGG | - | chr2_4:51661630-51661649 | Msa0333680:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 51660938 | 51663942 | 51660938 | ID=Msa0333680;Name=Msa0333680 |
| chr2_4 | mRNA | 51660938 | 51663942 | 51660938 | ID=Msa0333680-mRNA-1;Parent=Msa0333680;Name=Msa0333680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=271|1|1|1|1|1|5|215|344 |
| chr2_4 | exon | 51660938 | 51661250 | 51660938 | ID=Msa0333680-mRNA-1:exon:15450;Parent=Msa0333680-mRNA-1 |
| chr2_4 | exon | 51661583 | 51662256 | 51661583 | ID=Msa0333680-mRNA-1:exon:15449;Parent=Msa0333680-mRNA-1 |
| chr2_4 | exon | 51662698 | 51662873 | 51662698 | ID=Msa0333680-mRNA-1:exon:15448;Parent=Msa0333680-mRNA-1 |
| chr2_4 | exon | 51663420 | 51663472 | 51663420 | ID=Msa0333680-mRNA-1:exon:15447;Parent=Msa0333680-mRNA-1 |
| chr2_4 | exon | 51663638 | 51663942 | 51663638 | ID=Msa0333680-mRNA-1:exon:15446;Parent=Msa0333680-mRNA-1 |
| chr2_4 | five_prime_UTR | 51663672 | 51663942 | 51663672 | ID=Msa0333680-mRNA-1:five_prime_utr;Parent=Msa0333680-mRNA-1 |
| chr2_4 | CDS | 51663638 | 51663671 | 51663638 | ID=Msa0333680-mRNA-1:cds;Parent=Msa0333680-mRNA-1 |
| chr2_4 | CDS | 51663420 | 51663472 | 51663420 | ID=Msa0333680-mRNA-1:cds;Parent=Msa0333680-mRNA-1 |
| chr2_4 | CDS | 51662698 | 51662873 | 51662698 | ID=Msa0333680-mRNA-1:cds;Parent=Msa0333680-mRNA-1 |
| chr2_4 | CDS | 51661583 | 51662256 | 51661583 | ID=Msa0333680-mRNA-1:cds;Parent=Msa0333680-mRNA-1 |
| chr2_4 | CDS | 51661153 | 51661250 | 51661153 | ID=Msa0333680-mRNA-1:cds;Parent=Msa0333680-mRNA-1 |
| chr2_4 | three_prime_UTR | 51660938 | 51661152 | 51660938 | ID=Msa0333680-mRNA-1:three_prime_utr;Parent=Msa0333680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
