Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217350 | XP_003596579.1 | 99.237 | 131 | 1 | 0 | 1 | 131 | 1 | 131 | 4.18e-86 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217350 | sp|Q9LD28|H2A6_ARATH | 93.846 | 130 | 8 | 0 | 1 | 130 | 1 | 130 | 1.95e-82 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217350 | G7IHA6 | 99.237 | 131 | 1 | 0 | 1 | 131 | 1 | 131 | 1.99e-86 | 257 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0217350 | Msa0217380 | 0.813919 | 2.005779e-51 | -8.615850e-47 |
| Msa0217350 | Msa1376160 | 0.801022 | 1.095279e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217350 | MtrunA17_Chr2g0319181 | 99.237 | 131 | 1 | 0 | 1 | 131 | 1 | 131 | 3.84e-90 | 257 |
| Msa0217350 | MtrunA17_Chr2g0319191 | 93.182 | 132 | 8 | 1 | 1 | 131 | 1 | 132 | 2.20e-83 | 240 |
| Msa0217350 | MtrunA17_Chr7g0268831 | 85.484 | 124 | 14 | 1 | 3 | 126 | 13 | 132 | 2.72e-69 | 204 |
| Msa0217350 | MtrunA17_Chr7g0273351 | 84.921 | 126 | 11 | 2 | 3 | 126 | 10 | 129 | 2.78e-69 | 204 |
| Msa0217350 | MtrunA17_Chr7g0273331 | 84.921 | 126 | 11 | 2 | 3 | 126 | 66 | 185 | 3.66e-68 | 204 |
| Msa0217350 | MtrunA17_Chr7g0259151 | 81.513 | 119 | 18 | 1 | 3 | 121 | 13 | 127 | 1.09e-66 | 198 |
| Msa0217350 | MtrunA17_Chr2g0327951 | 78.704 | 108 | 23 | 0 | 14 | 121 | 57 | 164 | 3.66e-58 | 178 |
| Msa0217350 | MtrunA17_Chr7g0272611 | 79.630 | 108 | 22 | 0 | 14 | 121 | 24 | 131 | 5.95e-58 | 176 |
| Msa0217350 | MtrunA17_Chr4g0031041 | 77.982 | 109 | 24 | 0 | 14 | 122 | 16 | 124 | 2.12e-57 | 174 |
| Msa0217350 | MtrunA17_Chr2g0327931 | 74.138 | 116 | 30 | 0 | 16 | 131 | 23 | 138 | 3.15e-57 | 174 |
| Msa0217350 | MtrunA17_Chr4g0031651 | 77.570 | 107 | 24 | 0 | 16 | 122 | 24 | 130 | 2.30e-56 | 172 |
| Msa0217350 | MtrunA17_Chr4g0031001 | 77.570 | 107 | 24 | 0 | 16 | 122 | 24 | 130 | 2.53e-56 | 172 |
| Msa0217350 | MtrunA17_Chr4g0035621 | 77.570 | 107 | 24 | 0 | 16 | 122 | 24 | 130 | 4.31e-56 | 171 |
| Msa0217350 | MtrunA17_Chr8g0379311 | 77.570 | 107 | 24 | 0 | 16 | 122 | 24 | 130 | 5.38e-56 | 171 |
| Msa0217350 | MtrunA17_Chr4g0032301 | 78.302 | 106 | 23 | 0 | 16 | 121 | 24 | 129 | 5.95e-56 | 171 |
| Msa0217350 | MtrunA17_Chr7g0273341 | 81.250 | 112 | 10 | 2 | 15 | 126 | 57 | 157 | 2.69e-55 | 170 |
| Msa0217350 | MtrunA17_Chr1g0148961 | 64.545 | 110 | 37 | 2 | 14 | 122 | 24 | 132 | 1.75e-40 | 131 |
| Msa0217350 | MtrunA17_Chr1g0148951 | 64.545 | 110 | 37 | 2 | 14 | 122 | 24 | 132 | 1.75e-40 | 131 |
| Msa0217350 | MtrunA17_Chr6g0449661 | 63.303 | 109 | 31 | 2 | 16 | 123 | 85 | 185 | 3.52e-40 | 133 |
| Msa0217350 | MtrunA17_Chr3g0119971 | 62.037 | 108 | 32 | 2 | 17 | 123 | 81 | 180 | 2.42e-39 | 130 |
| Msa0217350 | MtrunA17_Chr1g0211651 | 57.692 | 130 | 46 | 4 | 1 | 122 | 1 | 129 | 4.84e-39 | 127 |
| Msa0217350 | MtrunA17_Chr1g0184901 | 64.486 | 107 | 36 | 2 | 17 | 122 | 27 | 132 | 9.55e-39 | 127 |
| Msa0217350 | MtrunA17_Chr4g0031031 | 78.378 | 74 | 16 | 0 | 37 | 110 | 10 | 83 | 4.73e-35 | 117 |
| Msa0217350 | MtrunA17_Chr4g0000531 | 87.500 | 56 | 6 | 1 | 77 | 131 | 5 | 60 | 6.38e-28 | 97.4 |
| Msa0217350 | MtrunA17_Chr4g0024701 | 51.429 | 105 | 31 | 2 | 16 | 120 | 26 | 110 | 2.15e-25 | 92.8 |
| Msa0217350 | MtrunA17_Chr1g0183701 | 53.623 | 69 | 32 | 0 | 59 | 127 | 30 | 98 | 8.95e-20 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217350 | AT5G54640.1 | 93.846 | 130 | 8 | 0 | 1 | 130 | 1 | 130 | 1.98e-83 | 240 |
| Msa0217350 | AT4G27230.2 | 92.366 | 131 | 10 | 0 | 1 | 131 | 1 | 131 | 2.16e-83 | 240 |
| Msa0217350 | AT4G27230.1 | 92.366 | 131 | 10 | 0 | 1 | 131 | 1 | 131 | 2.16e-83 | 240 |
| Msa0217350 | AT1G51060.1 | 93.651 | 126 | 8 | 0 | 1 | 126 | 1 | 126 | 1.78e-81 | 235 |
| Msa0217350 | AT3G20670.1 | 90.840 | 131 | 12 | 0 | 1 | 131 | 1 | 131 | 8.37e-81 | 234 |
| Msa0217350 | AT1G54690.1 | 83.594 | 128 | 18 | 1 | 2 | 126 | 5 | 132 | 1.11e-69 | 206 |
| Msa0217350 | AT1G08880.1 | 82.812 | 128 | 19 | 1 | 2 | 126 | 5 | 132 | 2.53e-69 | 205 |
| Msa0217350 | AT5G59870.1 | 76.786 | 112 | 25 | 1 | 12 | 122 | 19 | 130 | 5.39e-58 | 177 |
| Msa0217350 | AT5G02560.1 | 77.064 | 109 | 25 | 0 | 14 | 122 | 22 | 130 | 1.62e-56 | 173 |
| Msa0217350 | AT5G27670.1 | 75.893 | 112 | 27 | 0 | 14 | 125 | 23 | 134 | 1.67e-55 | 170 |
| Msa0217350 | AT5G02560.2 | 63.158 | 133 | 25 | 1 | 14 | 122 | 22 | 154 | 3.78e-51 | 160 |
| Msa0217350 | AT2G38810.1 | 62.162 | 111 | 40 | 2 | 11 | 120 | 23 | 132 | 1.65e-38 | 127 |
| Msa0217350 | AT2G38810.4 | 62.162 | 111 | 40 | 2 | 11 | 120 | 23 | 132 | 1.65e-38 | 127 |
| Msa0217350 | AT2G38810.3 | 62.162 | 111 | 40 | 2 | 11 | 120 | 23 | 132 | 1.65e-38 | 127 |
| Msa0217350 | AT2G38810.2 | 62.162 | 111 | 40 | 2 | 11 | 120 | 23 | 132 | 1.65e-38 | 127 |
| Msa0217350 | AT1G52740.1 | 63.208 | 106 | 37 | 2 | 18 | 122 | 28 | 132 | 5.63e-38 | 125 |
| Msa0217350 | AT3G54560.1 | 62.500 | 104 | 37 | 2 | 18 | 120 | 30 | 132 | 2.39e-36 | 121 |
| Msa0217350 | AT3G54560.2 | 62.500 | 104 | 37 | 2 | 18 | 120 | 30 | 132 | 2.39e-36 | 121 |
| Msa0217350 | AT4G13570.1 | 50.000 | 92 | 44 | 2 | 24 | 114 | 28 | 118 | 4.50e-22 | 84.7 |
| Msa0217350 | AT4G13570.2 | 49.451 | 91 | 44 | 2 | 25 | 114 | 35 | 124 | 1.25e-21 | 84.0 |
Find 64 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCGATTTGTAGAAAATT+TGG | 0.144288 | 2_1:-64231406 | None:intergenic |
| AGTTTATGATTGGGATTATT+AGG | 0.148471 | 2_1:+64232449 | Msa0217350:three_prime_UTR |
| AGAAAATTTGGGAACGGTTT+TGG | 0.220376 | 2_1:-64231394 | None:intergenic |
| ACTCCTTGAGGTAGCCTTCT+TGG | 0.241133 | 2_1:-64231479 | None:intergenic |
| AAGCAACAAGTTGTGAATAT+TGG | 0.259002 | 2_1:-64232296 | None:intergenic |
| TCATTCATCGTCAACATTCT+TGG | 0.287155 | 2_1:-64232338 | None:intergenic |
| TTGGAGGGACCAGCTTTCTT+TGG | 0.297734 | 2_1:-64232319 | None:intergenic |
| AAGCGATTTGTAGAAAATTT+GGG | 0.319672 | 2_1:-64231405 | None:intergenic |
| CTCCTTGAGGTAGCCTTCTT+GGG | 0.327446 | 2_1:-64231478 | None:intergenic |
| GAAGAATTGAGCAAGCTTCT+TGG | 0.338262 | 2_1:+64232241 | Msa0217350:CDS |
| GTTTATGATTGGGATTATTA+GGG | 0.359533 | 2_1:+64232450 | Msa0217350:three_prime_UTR |
| ATAACTGCATCTGCAAAATC+AGG | 0.369832 | 2_1:-64232380 | None:intergenic |
| CGCTTCGATTTCTTCATCAA+TGG | 0.377258 | 2_1:+64231423 | Msa0217350:exon |
| AGCAACAAGTTGTGAATATT+GGG | 0.378901 | 2_1:-64232295 | None:intergenic |
| TCTTGGGAGCACTGGAACCT+AGG | 0.384142 | 2_1:-64231462 | None:intergenic |
| GTTTCAGCAGAGTTTATGAT+TGG | 0.384275 | 2_1:+64232439 | Msa0217350:three_prime_UTR |
| AGTACGGCGGCGAGGTAAAC+AGG | 0.392522 | 2_1:-64231589 | None:intergenic |
| AACCGAGCGATACGGCCAAC+GGG | 0.422056 | 2_1:-64231523 | None:intergenic |
| TCCCCGTTGGCCGTATCGCT+CGG | 0.440290 | 2_1:+64231521 | Msa0217350:CDS |
| GGTGATGTTACCATTGCTAA+TGG | 0.441296 | 2_1:+64232262 | Msa0217350:CDS |
| TGTGCCAAGGCACATTCAAT+TGG | 0.445049 | 2_1:+64232204 | Msa0217350:CDS |
| GGATTATTAGGGCTTGTTAG+TGG | 0.465304 | 2_1:+64232461 | Msa0217350:three_prime_UTR |
| GGTAGCCTTCTTGGGAGCAC+TGG | 0.488988 | 2_1:-64231470 | None:intergenic |
| TTGTTGCTTCCAAAGAAAGC+TGG | 0.506478 | 2_1:+64232310 | Msa0217350:CDS |
| TCTTCATCAATGGCGGGTAG+AGG | 0.507919 | 2_1:+64231433 | Msa0217350:exon |
| CTTGGGAGCACTGGAACCTA+GGG | 0.510549 | 2_1:-64231461 | None:intergenic |
| TTTCAGCAGAGTTTATGATT+GGG | 0.511892 | 2_1:+64232440 | Msa0217350:three_prime_UTR |
| TTCGATTTCTTCATCAATGG+CGG | 0.516154 | 2_1:+64231426 | Msa0217350:exon |
| GGAATTGAATCAAAACTGAA+AGG | 0.537671 | 2_1:-64232562 | None:intergenic |
| TTCATCGTCAACATTCTTGG+AGG | 0.542588 | 2_1:-64232335 | None:intergenic |
| CCGTATCGCTCGGTTCCTCA+AGG | 0.543452 | 2_1:+64231531 | Msa0217350:CDS |
| ATCGCTCGGTTCCTCAAGGC+CGG | 0.547995 | 2_1:+64231535 | Msa0217350:CDS |
| ACCTCAAGGAGTAGCAAGGC+GGG | 0.549583 | 2_1:+64231490 | Msa0217350:CDS |
| CCTTGAGGAACCGAGCGATA+CGG | 0.551489 | 2_1:-64231531 | None:intergenic |
| GAATTGAATCAAAACTGAAA+GGG | 0.553647 | 2_1:-64232561 | None:intergenic |
| ATTGGCTGGAAATGCGGCAA+GGG | 0.558422 | 2_1:+64232162 | Msa0217350:CDS |
| GGAAAATACGCTGAACGTGT+TGG | 0.559261 | 2_1:+64231556 | Msa0217350:CDS |
| TACGCTGAACGTGTTGGTGC+TGG | 0.564093 | 2_1:+64231562 | Msa0217350:CDS |
| ATTTGTAGAAAATTTGGGAA+CGG | 0.573454 | 2_1:-64231400 | None:intergenic |
| AGGTTCCAGTGCTCCCAAGA+AGG | 0.574308 | 2_1:+64231465 | Msa0217350:CDS |
| ACAGCCAATTGAATGTGCCT+TGG | 0.575552 | 2_1:-64232208 | None:intergenic |
| GCGGGTCTTCAATTCCCCGT+TGG | 0.576005 | 2_1:+64231508 | Msa0217350:CDS |
| TCGATTTCTTCATCAATGGC+GGG | 0.581302 | 2_1:+64231427 | Msa0217350:exon |
| GCGGGTAGAGGCAAATCCCT+AGG | 0.587133 | 2_1:+64231445 | Msa0217350:CDS |
| TTTGGAATTGGCTGGAAATG+CGG | 0.591457 | 2_1:+64232156 | Msa0217350:CDS |
| GAACCGAGCGATACGGCCAA+CGG | 0.602999 | 2_1:-64231524 | None:intergenic |
| TCATCGTCAACATTCTTGGA+GGG | 0.603453 | 2_1:-64232334 | None:intergenic |
| ACCCGCCTTGCTACTCCTTG+AGG | 0.613927 | 2_1:-64231491 | None:intergenic |
| AGCGGCAAGATACTCAAGTA+CGG | 0.619985 | 2_1:-64231605 | None:intergenic |
| AATTGGCTGGAAATGCGGCA+AGG | 0.623603 | 2_1:+64232161 | Msa0217350:CDS |
| AAAATCATTAACTAGGAACA+GGG | 0.623809 | 2_1:-64232584 | None:intergenic |
| GGCACATTCAATTGGCTGTG+AGG | 0.627219 | 2_1:+64232212 | Msa0217350:CDS |
| GGCTACCTCAAGGAGTAGCA+AGG | 0.627401 | 2_1:+64231486 | Msa0217350:CDS |
| CTCCCAAGAAGGCTACCTCA+AGG | 0.634438 | 2_1:+64231476 | Msa0217350:CDS |
| ACTTGAGTATCTTGCCGCTG+AGG | 0.635586 | 2_1:+64231609 | Msa0217350:CDS |
| CATAACACCACCATTAGCAA+TGG | 0.645676 | 2_1:-64232272 | None:intergenic |
| GATACTCAAGTACGGCGGCG+AGG | 0.647574 | 2_1:-64231597 | None:intergenic |
| TACCTCAAGGAGTAGCAAGG+CGG | 0.663842 | 2_1:+64231489 | Msa0217350:CDS |
| GATGTTACCATTGCTAATGG+TGG | 0.667704 | 2_1:+64232265 | Msa0217350:CDS |
| AGAAGACAAGAATTGTGCCA+AGG | 0.670789 | 2_1:+64232191 | Msa0217350:CDS |
| AAATCATTAACTAGGAACAG+GGG | 0.705398 | 2_1:-64232583 | None:intergenic |
| ACCGAGCGATACGGCCAACG+GGG | 0.712861 | 2_1:-64231522 | None:intergenic |
| GGTGATGGAAATTACCTCAG+CGG | 0.734255 | 2_1:-64231623 | None:intergenic |
| GGCAAGATACTCAAGTACGG+CGG | 0.736537 | 2_1:-64231602 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATAATTTAATGAAATT+GGG | - | chr2_1:64231886-64231905 | None:intergenic | 10.0% |
| !! | ATGAATTTAACTAAAAATTG+GGG | - | chr2_1:64231732-64231751 | None:intergenic | 15.0% |
| !! | GATGAATTTAACTAAAAATT+GGG | - | chr2_1:64231733-64231752 | None:intergenic | 15.0% |
| !! | TGAATAATTTAATGAAATTG+GGG | - | chr2_1:64231885-64231904 | None:intergenic | 15.0% |
| !! | GATGAATAATTTAATGAAAT+TGG | - | chr2_1:64231887-64231906 | None:intergenic | 15.0% |
| !!! | AATTTATTGATTATATTTGC+TGG | + | chr2_1:64232065-64232084 | Msa0217350:intron | 15.0% |
| !! | TATATTCAAATTCAACAAAA+AGG | - | chr2_1:64232097-64232116 | None:intergenic | 15.0% |
| !! | TGTTGAATTTGAATATATTA+TGG | + | chr2_1:64232100-64232119 | Msa0217350:intron | 15.0% |
| !! | GTTGAATTTGAATATATTAT+GGG | + | chr2_1:64232101-64232120 | Msa0217350:intron | 15.0% |
| !! | CGATGAATTTAACTAAAAAT+TGG | - | chr2_1:64231734-64231753 | None:intergenic | 20.0% |
| !! | TGGTTAAGTTACATAAAATT+GGG | - | chr2_1:64232014-64232033 | None:intergenic | 20.0% |
| !! | TTGGTTAAGTTACATAAAAT+TGG | - | chr2_1:64232015-64232034 | None:intergenic | 20.0% |
| !!! | AAATTGTGATTTTTGTGATT+AGG | + | chr2_1:64232132-64232151 | Msa0217350:intron | 20.0% |
| !! | TTGTACAAAAATCATTAACT+AGG | - | chr2_1:64232594-64232613 | None:intergenic | 20.0% |
| ! | ATTTGTAGAAAATTTGGGAA+CGG | - | chr2_1:64231403-64231422 | None:intergenic | 25.0% |
| ! | AAGCGATTTGTAGAAAATTT+GGG | - | chr2_1:64231408-64231427 | None:intergenic | 25.0% |
| ! | GGTTAAGTTACATAAAATTG+GGG | - | chr2_1:64232013-64232032 | None:intergenic | 25.0% |
| !! | TGATTTTTGTGATTAGGTTT+TGG | + | chr2_1:64232138-64232157 | Msa0217350:intron | 25.0% |
| ! | AGTTTATGATTGGGATTATT+AGG | + | chr2_1:64232449-64232468 | Msa0217350:three_prime_UTR | 25.0% |
| ! | GTTTATGATTGGGATTATTA+GGG | + | chr2_1:64232450-64232469 | Msa0217350:three_prime_UTR | 25.0% |
| !!! | TTGTTACTTTTGCATGAAAA+TGG | + | chr2_1:64232518-64232537 | Msa0217350:three_prime_UTR | 25.0% |
| ! | GAATTGAATCAAAACTGAAA+GGG | - | chr2_1:64232564-64232583 | None:intergenic | 25.0% |
| ! | AAAATCATTAACTAGGAACA+GGG | - | chr2_1:64232587-64232606 | None:intergenic | 25.0% |
| ! | AAAAATCATTAACTAGGAAC+AGG | - | chr2_1:64232588-64232607 | None:intergenic | 25.0% |
| !! | GTTTTCATGAAAGATTGATA+TGG | + | chr2_1:64232649-64232668 | Msa0217350:three_prime_UTR | 25.0% |
| GAAGCGATTTGTAGAAAATT+TGG | - | chr2_1:64231409-64231428 | None:intergenic | 30.0% | |
| ATATACATGTCGTAAGATCT+AGG | + | chr2_1:64231684-64231703 | Msa0217350:intron | 30.0% | |
| TATACATGTCGTAAGATCTA+GGG | + | chr2_1:64231685-64231704 | Msa0217350:intron | 30.0% | |
| ACTCAAGAAAGATGCTTAAT+TGG | - | chr2_1:64232034-64232053 | None:intergenic | 30.0% | |
| !!! | TTGTGATTAGGTTTTGGAAT+TGG | + | chr2_1:64232144-64232163 | Msa0217350:intron | 30.0% |
| AGCAACAAGTTGTGAATATT+GGG | - | chr2_1:64232298-64232317 | None:intergenic | 30.0% | |
| AAGCAACAAGTTGTGAATAT+TGG | - | chr2_1:64232299-64232318 | None:intergenic | 30.0% | |
| TTTCAGCAGAGTTTATGATT+GGG | + | chr2_1:64232440-64232459 | Msa0217350:three_prime_UTR | 30.0% | |
| !! | TTACTTTTGCATGAAAATGG+TGG | + | chr2_1:64232521-64232540 | Msa0217350:three_prime_UTR | 30.0% |
| GGAATTGAATCAAAACTGAA+AGG | - | chr2_1:64232565-64232584 | None:intergenic | 30.0% | |
| AAATCATTAACTAGGAACAG+GGG | - | chr2_1:64232586-64232605 | None:intergenic | 30.0% | |
| ! | AGAAAATTTGGGAACGGTTT+TGG | - | chr2_1:64231397-64231416 | None:intergenic | 35.0% |
| TTCGATTTCTTCATCAATGG+CGG | + | chr2_1:64231426-64231445 | Msa0217350:exon | 35.0% | |
| GAGATTTCGAAGAATAAGAG+CGG | - | chr2_1:64231647-64231666 | None:intergenic | 35.0% | |
| ATATACATGTTGCACGATCT+AGG | + | chr2_1:64231837-64231856 | Msa0217350:intron | 35.0% | |
| TATACATGTTGCACGATCTA+GGG | + | chr2_1:64231838-64231857 | Msa0217350:intron | 35.0% | |
| CGAATTGAATCTAAACAACG+TGG | - | chr2_1:64231986-64232005 | None:intergenic | 35.0% | |
| TCATTCATCGTCAACATTCT+TGG | - | chr2_1:64232341-64232360 | None:intergenic | 35.0% | |
| ATAACTGCATCTGCAAAATC+AGG | - | chr2_1:64232383-64232402 | None:intergenic | 35.0% | |
| GTTTCAGCAGAGTTTATGAT+TGG | + | chr2_1:64232439-64232458 | Msa0217350:three_prime_UTR | 35.0% | |
| CGCTTCGATTTCTTCATCAA+TGG | + | chr2_1:64231423-64231442 | Msa0217350:exon | 40.0% | |
| TCGATTTCTTCATCAATGGC+GGG | + | chr2_1:64231427-64231446 | Msa0217350:exon | 40.0% | |
| ! | AACACGTTCAGCGTATTTTC+CGG | - | chr2_1:64231557-64231576 | None:intergenic | 40.0% |
| ! | ACAACGTGGATTATGTGACA+TGG | - | chr2_1:64231972-64231991 | None:intergenic | 40.0% |
| !!! | GATTAGGTTTTGGAATTGGC+TGG | + | chr2_1:64232148-64232167 | Msa0217350:intron | 40.0% |
| ! | TTTGGAATTGGCTGGAAATG+CGG | + | chr2_1:64232156-64232175 | Msa0217350:CDS | 40.0% |
| AGAAGACAAGAATTGTGCCA+AGG | + | chr2_1:64232191-64232210 | Msa0217350:CDS | 40.0% | |
| GAAGAATTGAGCAAGCTTCT+TGG | + | chr2_1:64232241-64232260 | Msa0217350:CDS | 40.0% | |
| GGTGATGTTACCATTGCTAA+TGG | + | chr2_1:64232262-64232281 | Msa0217350:CDS | 40.0% | |
| GATGTTACCATTGCTAATGG+TGG | + | chr2_1:64232265-64232284 | Msa0217350:CDS | 40.0% | |
| CATAACACCACCATTAGCAA+TGG | - | chr2_1:64232275-64232294 | None:intergenic | 40.0% | |
| ! | TTGTTGCTTCCAAAGAAAGC+TGG | + | chr2_1:64232310-64232329 | Msa0217350:CDS | 40.0% |
| TCATCGTCAACATTCTTGGA+GGG | - | chr2_1:64232337-64232356 | None:intergenic | 40.0% | |
| TTCATCGTCAACATTCTTGG+AGG | - | chr2_1:64232338-64232357 | None:intergenic | 40.0% | |
| !! | GGATTATTAGGGCTTGTTAG+TGG | + | chr2_1:64232461-64232480 | Msa0217350:three_prime_UTR | 40.0% |
| GGAAAATACGCTGAACGTGT+TGG | + | chr2_1:64231556-64231575 | Msa0217350:CDS | 45.0% | |
| AGCGGCAAGATACTCAAGTA+CGG | - | chr2_1:64231608-64231627 | None:intergenic | 45.0% | |
| !! | GGTGATGGAAATTACCTCAG+CGG | - | chr2_1:64231626-64231645 | None:intergenic | 45.0% |
| TCGAAGAATAAGAGCGGTGA+TGG | - | chr2_1:64231641-64231660 | None:intergenic | 45.0% | |
| TGTGCCAAGGCACATTCAAT+TGG | + | chr2_1:64232204-64232223 | Msa0217350:CDS | 45.0% | |
| ACAGCCAATTGAATGTGCCT+TGG | - | chr2_1:64232211-64232230 | None:intergenic | 45.0% | |
| !! | TCTTCATCAATGGCGGGTAG+AGG | + | chr2_1:64231433-64231452 | Msa0217350:exon | 50.0% |
| CTCCTTGAGGTAGCCTTCTT+GGG | - | chr2_1:64231481-64231500 | None:intergenic | 50.0% | |
| ACTCCTTGAGGTAGCCTTCT+TGG | - | chr2_1:64231482-64231501 | None:intergenic | 50.0% | |
| TACCTCAAGGAGTAGCAAGG+CGG | + | chr2_1:64231489-64231508 | Msa0217350:CDS | 50.0% | |
| GGCAAGATACTCAAGTACGG+CGG | - | chr2_1:64231605-64231624 | None:intergenic | 50.0% | |
| ACTTGAGTATCTTGCCGCTG+AGG | + | chr2_1:64231609-64231628 | Msa0217350:CDS | 50.0% | |
| AATTGGCTGGAAATGCGGCA+AGG | + | chr2_1:64232161-64232180 | Msa0217350:CDS | 50.0% | |
| ATTGGCTGGAAATGCGGCAA+GGG | + | chr2_1:64232162-64232181 | Msa0217350:CDS | 50.0% | |
| GGCACATTCAATTGGCTGTG+AGG | + | chr2_1:64232212-64232231 | Msa0217350:CDS | 50.0% | |
| TTGGAGGGACCAGCTTTCTT+TGG | - | chr2_1:64232322-64232341 | None:intergenic | 50.0% | |
| !! | CTTGGGAGCACTGGAACCTA+GGG | - | chr2_1:64231464-64231483 | None:intergenic | 55.0% |
| !! | TCTTGGGAGCACTGGAACCT+AGG | - | chr2_1:64231465-64231484 | None:intergenic | 55.0% |
| AGGTTCCAGTGCTCCCAAGA+AGG | + | chr2_1:64231465-64231484 | Msa0217350:CDS | 55.0% | |
| CTCCCAAGAAGGCTACCTCA+AGG | + | chr2_1:64231476-64231495 | Msa0217350:CDS | 55.0% | |
| GGCTACCTCAAGGAGTAGCA+AGG | + | chr2_1:64231486-64231505 | Msa0217350:CDS | 55.0% | |
| ACCTCAAGGAGTAGCAAGGC+GGG | + | chr2_1:64231490-64231509 | Msa0217350:CDS | 55.0% | |
| CCTTGAGGAACCGAGCGATA+CGG | - | chr2_1:64231534-64231553 | None:intergenic | 55.0% | |
| ! | CAGCGTATTTTCCGGCCTTG+AGG | - | chr2_1:64231549-64231568 | None:intergenic | 55.0% |
| ! | TACGCTGAACGTGTTGGTGC+TGG | + | chr2_1:64231562-64231581 | Msa0217350:CDS | 55.0% |
| GCGGGTAGAGGCAAATCCCT+AGG | + | chr2_1:64231445-64231464 | Msa0217350:CDS | 60.0% | |
| ! | GGTAGCCTTCTTGGGAGCAC+TGG | - | chr2_1:64231473-64231492 | None:intergenic | 60.0% |
| ACCCGCCTTGCTACTCCTTG+AGG | - | chr2_1:64231494-64231513 | None:intergenic | 60.0% | |
| GCGGGTCTTCAATTCCCCGT+TGG | + | chr2_1:64231508-64231527 | Msa0217350:CDS | 60.0% | |
| AACCGAGCGATACGGCCAAC+GGG | - | chr2_1:64231526-64231545 | None:intergenic | 60.0% | |
| GAACCGAGCGATACGGCCAA+CGG | - | chr2_1:64231527-64231546 | None:intergenic | 60.0% | |
| CCGTATCGCTCGGTTCCTCA+AGG | + | chr2_1:64231531-64231550 | Msa0217350:CDS | 60.0% | |
| ATCGCTCGGTTCCTCAAGGC+CGG | + | chr2_1:64231535-64231554 | Msa0217350:CDS | 60.0% | |
| AGTACGGCGGCGAGGTAAAC+AGG | - | chr2_1:64231592-64231611 | None:intergenic | 60.0% | |
| GATACTCAAGTACGGCGGCG+AGG | - | chr2_1:64231600-64231619 | None:intergenic | 60.0% | |
| TCCCCGTTGGCCGTATCGCT+CGG | + | chr2_1:64231521-64231540 | Msa0217350:CDS | 65.0% | |
| ACCGAGCGATACGGCCAACG+GGG | - | chr2_1:64231525-64231544 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 64231353 | 64232678 | 64231353 | ID=Msa0217350;Name=Msa0217350 |
| chr2_1 | mRNA | 64231353 | 64232678 | 64231353 | ID=Msa0217350-mRNA-1;Parent=Msa0217350;Name=Msa0217350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89|1|1|1|1|1|2|318|131 |
| chr2_1 | exon | 64231353 | 64231630 | 64231353 | ID=Msa0217350-mRNA-1:exon:17769;Parent=Msa0217350-mRNA-1 |
| chr2_1 | exon | 64232154 | 64232678 | 64232154 | ID=Msa0217350-mRNA-1:exon:17770;Parent=Msa0217350-mRNA-1 |
| chr2_1 | five_prime_UTR | 64231353 | 64231441 | 64231353 | ID=Msa0217350-mRNA-1:five_prime_utr;Parent=Msa0217350-mRNA-1 |
| chr2_1 | CDS | 64231442 | 64231630 | 64231442 | ID=Msa0217350-mRNA-1:cds;Parent=Msa0217350-mRNA-1 |
| chr2_1 | CDS | 64232154 | 64232360 | 64232154 | ID=Msa0217350-mRNA-1:cds;Parent=Msa0217350-mRNA-1 |
| chr2_1 | three_prime_UTR | 64232361 | 64232678 | 64232361 | ID=Msa0217350-mRNA-1:three_prime_utr;Parent=Msa0217350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
