AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0217350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217350 MtrunA17_Chr2g0319181 99.237 131 1 0 1 131 1 131 3.84e-90 257
Msa0217350 MtrunA17_Chr2g0319191 93.182 132 8 1 1 131 1 132 2.20e-83 240
Msa0217350 MtrunA17_Chr7g0268831 85.484 124 14 1 3 126 13 132 2.72e-69 204
Msa0217350 MtrunA17_Chr7g0273351 84.921 126 11 2 3 126 10 129 2.78e-69 204
Msa0217350 MtrunA17_Chr7g0273331 84.921 126 11 2 3 126 66 185 3.66e-68 204
Msa0217350 MtrunA17_Chr7g0259151 81.513 119 18 1 3 121 13 127 1.09e-66 198
Msa0217350 MtrunA17_Chr2g0327951 78.704 108 23 0 14 121 57 164 3.66e-58 178
Msa0217350 MtrunA17_Chr7g0272611 79.630 108 22 0 14 121 24 131 5.95e-58 176
Msa0217350 MtrunA17_Chr4g0031041 77.982 109 24 0 14 122 16 124 2.12e-57 174
Msa0217350 MtrunA17_Chr2g0327931 74.138 116 30 0 16 131 23 138 3.15e-57 174
Msa0217350 MtrunA17_Chr4g0031651 77.570 107 24 0 16 122 24 130 2.30e-56 172
Msa0217350 MtrunA17_Chr4g0031001 77.570 107 24 0 16 122 24 130 2.53e-56 172
Msa0217350 MtrunA17_Chr4g0035621 77.570 107 24 0 16 122 24 130 4.31e-56 171
Msa0217350 MtrunA17_Chr8g0379311 77.570 107 24 0 16 122 24 130 5.38e-56 171
Msa0217350 MtrunA17_Chr4g0032301 78.302 106 23 0 16 121 24 129 5.95e-56 171
Msa0217350 MtrunA17_Chr7g0273341 81.250 112 10 2 15 126 57 157 2.69e-55 170
Msa0217350 MtrunA17_Chr1g0148961 64.545 110 37 2 14 122 24 132 1.75e-40 131
Msa0217350 MtrunA17_Chr1g0148951 64.545 110 37 2 14 122 24 132 1.75e-40 131
Msa0217350 MtrunA17_Chr6g0449661 63.303 109 31 2 16 123 85 185 3.52e-40 133
Msa0217350 MtrunA17_Chr3g0119971 62.037 108 32 2 17 123 81 180 2.42e-39 130
Msa0217350 MtrunA17_Chr1g0211651 57.692 130 46 4 1 122 1 129 4.84e-39 127
Msa0217350 MtrunA17_Chr1g0184901 64.486 107 36 2 17 122 27 132 9.55e-39 127
Msa0217350 MtrunA17_Chr4g0031031 78.378 74 16 0 37 110 10 83 4.73e-35 117
Msa0217350 MtrunA17_Chr4g0000531 87.500 56 6 1 77 131 5 60 6.38e-28 97.4
Msa0217350 MtrunA17_Chr4g0024701 51.429 105 31 2 16 120 26 110 2.15e-25 92.8
Msa0217350 MtrunA17_Chr1g0183701 53.623 69 32 0 59 127 30 98 8.95e-20 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217350 AT5G54640.1 93.846 130 8 0 1 130 1 130 1.98e-83 240
Msa0217350 AT4G27230.2 92.366 131 10 0 1 131 1 131 2.16e-83 240
Msa0217350 AT4G27230.1 92.366 131 10 0 1 131 1 131 2.16e-83 240
Msa0217350 AT1G51060.1 93.651 126 8 0 1 126 1 126 1.78e-81 235
Msa0217350 AT3G20670.1 90.840 131 12 0 1 131 1 131 8.37e-81 234
Msa0217350 AT1G54690.1 83.594 128 18 1 2 126 5 132 1.11e-69 206
Msa0217350 AT1G08880.1 82.812 128 19 1 2 126 5 132 2.53e-69 205
Msa0217350 AT5G59870.1 76.786 112 25 1 12 122 19 130 5.39e-58 177
Msa0217350 AT5G02560.1 77.064 109 25 0 14 122 22 130 1.62e-56 173
Msa0217350 AT5G27670.1 75.893 112 27 0 14 125 23 134 1.67e-55 170
Msa0217350 AT5G02560.2 63.158 133 25 1 14 122 22 154 3.78e-51 160
Msa0217350 AT2G38810.1 62.162 111 40 2 11 120 23 132 1.65e-38 127
Msa0217350 AT2G38810.4 62.162 111 40 2 11 120 23 132 1.65e-38 127
Msa0217350 AT2G38810.3 62.162 111 40 2 11 120 23 132 1.65e-38 127
Msa0217350 AT2G38810.2 62.162 111 40 2 11 120 23 132 1.65e-38 127
Msa0217350 AT1G52740.1 63.208 106 37 2 18 122 28 132 5.63e-38 125
Msa0217350 AT3G54560.1 62.500 104 37 2 18 120 30 132 2.39e-36 121
Msa0217350 AT3G54560.2 62.500 104 37 2 18 120 30 132 2.39e-36 121
Msa0217350 AT4G13570.1 50.000 92 44 2 24 114 28 118 4.50e-22 84.7
Msa0217350 AT4G13570.2 49.451 91 44 2 25 114 35 124 1.25e-21 84.0

Find 64 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCGATTTGTAGAAAATT+TGG 0.144288 2_1:-64231406 None:intergenic
AGTTTATGATTGGGATTATT+AGG 0.148471 2_1:+64232449 Msa0217350:three_prime_UTR
AGAAAATTTGGGAACGGTTT+TGG 0.220376 2_1:-64231394 None:intergenic
ACTCCTTGAGGTAGCCTTCT+TGG 0.241133 2_1:-64231479 None:intergenic
AAGCAACAAGTTGTGAATAT+TGG 0.259002 2_1:-64232296 None:intergenic
TCATTCATCGTCAACATTCT+TGG 0.287155 2_1:-64232338 None:intergenic
TTGGAGGGACCAGCTTTCTT+TGG 0.297734 2_1:-64232319 None:intergenic
AAGCGATTTGTAGAAAATTT+GGG 0.319672 2_1:-64231405 None:intergenic
CTCCTTGAGGTAGCCTTCTT+GGG 0.327446 2_1:-64231478 None:intergenic
GAAGAATTGAGCAAGCTTCT+TGG 0.338262 2_1:+64232241 Msa0217350:CDS
GTTTATGATTGGGATTATTA+GGG 0.359533 2_1:+64232450 Msa0217350:three_prime_UTR
ATAACTGCATCTGCAAAATC+AGG 0.369832 2_1:-64232380 None:intergenic
CGCTTCGATTTCTTCATCAA+TGG 0.377258 2_1:+64231423 Msa0217350:exon
AGCAACAAGTTGTGAATATT+GGG 0.378901 2_1:-64232295 None:intergenic
TCTTGGGAGCACTGGAACCT+AGG 0.384142 2_1:-64231462 None:intergenic
GTTTCAGCAGAGTTTATGAT+TGG 0.384275 2_1:+64232439 Msa0217350:three_prime_UTR
AGTACGGCGGCGAGGTAAAC+AGG 0.392522 2_1:-64231589 None:intergenic
AACCGAGCGATACGGCCAAC+GGG 0.422056 2_1:-64231523 None:intergenic
TCCCCGTTGGCCGTATCGCT+CGG 0.440290 2_1:+64231521 Msa0217350:CDS
GGTGATGTTACCATTGCTAA+TGG 0.441296 2_1:+64232262 Msa0217350:CDS
TGTGCCAAGGCACATTCAAT+TGG 0.445049 2_1:+64232204 Msa0217350:CDS
GGATTATTAGGGCTTGTTAG+TGG 0.465304 2_1:+64232461 Msa0217350:three_prime_UTR
GGTAGCCTTCTTGGGAGCAC+TGG 0.488988 2_1:-64231470 None:intergenic
TTGTTGCTTCCAAAGAAAGC+TGG 0.506478 2_1:+64232310 Msa0217350:CDS
TCTTCATCAATGGCGGGTAG+AGG 0.507919 2_1:+64231433 Msa0217350:exon
CTTGGGAGCACTGGAACCTA+GGG 0.510549 2_1:-64231461 None:intergenic
TTTCAGCAGAGTTTATGATT+GGG 0.511892 2_1:+64232440 Msa0217350:three_prime_UTR
TTCGATTTCTTCATCAATGG+CGG 0.516154 2_1:+64231426 Msa0217350:exon
GGAATTGAATCAAAACTGAA+AGG 0.537671 2_1:-64232562 None:intergenic
TTCATCGTCAACATTCTTGG+AGG 0.542588 2_1:-64232335 None:intergenic
CCGTATCGCTCGGTTCCTCA+AGG 0.543452 2_1:+64231531 Msa0217350:CDS
ATCGCTCGGTTCCTCAAGGC+CGG 0.547995 2_1:+64231535 Msa0217350:CDS
ACCTCAAGGAGTAGCAAGGC+GGG 0.549583 2_1:+64231490 Msa0217350:CDS
CCTTGAGGAACCGAGCGATA+CGG 0.551489 2_1:-64231531 None:intergenic
GAATTGAATCAAAACTGAAA+GGG 0.553647 2_1:-64232561 None:intergenic
ATTGGCTGGAAATGCGGCAA+GGG 0.558422 2_1:+64232162 Msa0217350:CDS
GGAAAATACGCTGAACGTGT+TGG 0.559261 2_1:+64231556 Msa0217350:CDS
TACGCTGAACGTGTTGGTGC+TGG 0.564093 2_1:+64231562 Msa0217350:CDS
ATTTGTAGAAAATTTGGGAA+CGG 0.573454 2_1:-64231400 None:intergenic
AGGTTCCAGTGCTCCCAAGA+AGG 0.574308 2_1:+64231465 Msa0217350:CDS
ACAGCCAATTGAATGTGCCT+TGG 0.575552 2_1:-64232208 None:intergenic
GCGGGTCTTCAATTCCCCGT+TGG 0.576005 2_1:+64231508 Msa0217350:CDS
TCGATTTCTTCATCAATGGC+GGG 0.581302 2_1:+64231427 Msa0217350:exon
GCGGGTAGAGGCAAATCCCT+AGG 0.587133 2_1:+64231445 Msa0217350:CDS
TTTGGAATTGGCTGGAAATG+CGG 0.591457 2_1:+64232156 Msa0217350:CDS
GAACCGAGCGATACGGCCAA+CGG 0.602999 2_1:-64231524 None:intergenic
TCATCGTCAACATTCTTGGA+GGG 0.603453 2_1:-64232334 None:intergenic
ACCCGCCTTGCTACTCCTTG+AGG 0.613927 2_1:-64231491 None:intergenic
AGCGGCAAGATACTCAAGTA+CGG 0.619985 2_1:-64231605 None:intergenic
AATTGGCTGGAAATGCGGCA+AGG 0.623603 2_1:+64232161 Msa0217350:CDS
AAAATCATTAACTAGGAACA+GGG 0.623809 2_1:-64232584 None:intergenic
GGCACATTCAATTGGCTGTG+AGG 0.627219 2_1:+64232212 Msa0217350:CDS
GGCTACCTCAAGGAGTAGCA+AGG 0.627401 2_1:+64231486 Msa0217350:CDS
CTCCCAAGAAGGCTACCTCA+AGG 0.634438 2_1:+64231476 Msa0217350:CDS
ACTTGAGTATCTTGCCGCTG+AGG 0.635586 2_1:+64231609 Msa0217350:CDS
CATAACACCACCATTAGCAA+TGG 0.645676 2_1:-64232272 None:intergenic
GATACTCAAGTACGGCGGCG+AGG 0.647574 2_1:-64231597 None:intergenic
TACCTCAAGGAGTAGCAAGG+CGG 0.663842 2_1:+64231489 Msa0217350:CDS
GATGTTACCATTGCTAATGG+TGG 0.667704 2_1:+64232265 Msa0217350:CDS
AGAAGACAAGAATTGTGCCA+AGG 0.670789 2_1:+64232191 Msa0217350:CDS
AAATCATTAACTAGGAACAG+GGG 0.705398 2_1:-64232583 None:intergenic
ACCGAGCGATACGGCCAACG+GGG 0.712861 2_1:-64231522 None:intergenic
GGTGATGGAAATTACCTCAG+CGG 0.734255 2_1:-64231623 None:intergenic
GGCAAGATACTCAAGTACGG+CGG 0.736537 2_1:-64231602 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATAATTTAATGAAATT+GGG - chr2_1:64231886-64231905 None:intergenic 10.0%
!! ATGAATTTAACTAAAAATTG+GGG - chr2_1:64231732-64231751 None:intergenic 15.0%
!! GATGAATTTAACTAAAAATT+GGG - chr2_1:64231733-64231752 None:intergenic 15.0%
!! TGAATAATTTAATGAAATTG+GGG - chr2_1:64231885-64231904 None:intergenic 15.0%
!! GATGAATAATTTAATGAAAT+TGG - chr2_1:64231887-64231906 None:intergenic 15.0%
!!! AATTTATTGATTATATTTGC+TGG + chr2_1:64232065-64232084 Msa0217350:intron 15.0%
!! TATATTCAAATTCAACAAAA+AGG - chr2_1:64232097-64232116 None:intergenic 15.0%
!! TGTTGAATTTGAATATATTA+TGG + chr2_1:64232100-64232119 Msa0217350:intron 15.0%
!! GTTGAATTTGAATATATTAT+GGG + chr2_1:64232101-64232120 Msa0217350:intron 15.0%
!! CGATGAATTTAACTAAAAAT+TGG - chr2_1:64231734-64231753 None:intergenic 20.0%
!! TGGTTAAGTTACATAAAATT+GGG - chr2_1:64232014-64232033 None:intergenic 20.0%
!! TTGGTTAAGTTACATAAAAT+TGG - chr2_1:64232015-64232034 None:intergenic 20.0%
!!! AAATTGTGATTTTTGTGATT+AGG + chr2_1:64232132-64232151 Msa0217350:intron 20.0%
!! TTGTACAAAAATCATTAACT+AGG - chr2_1:64232594-64232613 None:intergenic 20.0%
! ATTTGTAGAAAATTTGGGAA+CGG - chr2_1:64231403-64231422 None:intergenic 25.0%
! AAGCGATTTGTAGAAAATTT+GGG - chr2_1:64231408-64231427 None:intergenic 25.0%
! GGTTAAGTTACATAAAATTG+GGG - chr2_1:64232013-64232032 None:intergenic 25.0%
!! TGATTTTTGTGATTAGGTTT+TGG + chr2_1:64232138-64232157 Msa0217350:intron 25.0%
! AGTTTATGATTGGGATTATT+AGG + chr2_1:64232449-64232468 Msa0217350:three_prime_UTR 25.0%
! GTTTATGATTGGGATTATTA+GGG + chr2_1:64232450-64232469 Msa0217350:three_prime_UTR 25.0%
!!! TTGTTACTTTTGCATGAAAA+TGG + chr2_1:64232518-64232537 Msa0217350:three_prime_UTR 25.0%
! GAATTGAATCAAAACTGAAA+GGG - chr2_1:64232564-64232583 None:intergenic 25.0%
! AAAATCATTAACTAGGAACA+GGG - chr2_1:64232587-64232606 None:intergenic 25.0%
! AAAAATCATTAACTAGGAAC+AGG - chr2_1:64232588-64232607 None:intergenic 25.0%
!! GTTTTCATGAAAGATTGATA+TGG + chr2_1:64232649-64232668 Msa0217350:three_prime_UTR 25.0%
GAAGCGATTTGTAGAAAATT+TGG - chr2_1:64231409-64231428 None:intergenic 30.0%
ATATACATGTCGTAAGATCT+AGG + chr2_1:64231684-64231703 Msa0217350:intron 30.0%
TATACATGTCGTAAGATCTA+GGG + chr2_1:64231685-64231704 Msa0217350:intron 30.0%
ACTCAAGAAAGATGCTTAAT+TGG - chr2_1:64232034-64232053 None:intergenic 30.0%
!!! TTGTGATTAGGTTTTGGAAT+TGG + chr2_1:64232144-64232163 Msa0217350:intron 30.0%
AGCAACAAGTTGTGAATATT+GGG - chr2_1:64232298-64232317 None:intergenic 30.0%
AAGCAACAAGTTGTGAATAT+TGG - chr2_1:64232299-64232318 None:intergenic 30.0%
TTTCAGCAGAGTTTATGATT+GGG + chr2_1:64232440-64232459 Msa0217350:three_prime_UTR 30.0%
!! TTACTTTTGCATGAAAATGG+TGG + chr2_1:64232521-64232540 Msa0217350:three_prime_UTR 30.0%
GGAATTGAATCAAAACTGAA+AGG - chr2_1:64232565-64232584 None:intergenic 30.0%
AAATCATTAACTAGGAACAG+GGG - chr2_1:64232586-64232605 None:intergenic 30.0%
! AGAAAATTTGGGAACGGTTT+TGG - chr2_1:64231397-64231416 None:intergenic 35.0%
TTCGATTTCTTCATCAATGG+CGG + chr2_1:64231426-64231445 Msa0217350:exon 35.0%
GAGATTTCGAAGAATAAGAG+CGG - chr2_1:64231647-64231666 None:intergenic 35.0%
ATATACATGTTGCACGATCT+AGG + chr2_1:64231837-64231856 Msa0217350:intron 35.0%
TATACATGTTGCACGATCTA+GGG + chr2_1:64231838-64231857 Msa0217350:intron 35.0%
CGAATTGAATCTAAACAACG+TGG - chr2_1:64231986-64232005 None:intergenic 35.0%
TCATTCATCGTCAACATTCT+TGG - chr2_1:64232341-64232360 None:intergenic 35.0%
ATAACTGCATCTGCAAAATC+AGG - chr2_1:64232383-64232402 None:intergenic 35.0%
GTTTCAGCAGAGTTTATGAT+TGG + chr2_1:64232439-64232458 Msa0217350:three_prime_UTR 35.0%
CGCTTCGATTTCTTCATCAA+TGG + chr2_1:64231423-64231442 Msa0217350:exon 40.0%
TCGATTTCTTCATCAATGGC+GGG + chr2_1:64231427-64231446 Msa0217350:exon 40.0%
! AACACGTTCAGCGTATTTTC+CGG - chr2_1:64231557-64231576 None:intergenic 40.0%
! ACAACGTGGATTATGTGACA+TGG - chr2_1:64231972-64231991 None:intergenic 40.0%
!!! GATTAGGTTTTGGAATTGGC+TGG + chr2_1:64232148-64232167 Msa0217350:intron 40.0%
! TTTGGAATTGGCTGGAAATG+CGG + chr2_1:64232156-64232175 Msa0217350:CDS 40.0%
AGAAGACAAGAATTGTGCCA+AGG + chr2_1:64232191-64232210 Msa0217350:CDS 40.0%
GAAGAATTGAGCAAGCTTCT+TGG + chr2_1:64232241-64232260 Msa0217350:CDS 40.0%
GGTGATGTTACCATTGCTAA+TGG + chr2_1:64232262-64232281 Msa0217350:CDS 40.0%
GATGTTACCATTGCTAATGG+TGG + chr2_1:64232265-64232284 Msa0217350:CDS 40.0%
CATAACACCACCATTAGCAA+TGG - chr2_1:64232275-64232294 None:intergenic 40.0%
! TTGTTGCTTCCAAAGAAAGC+TGG + chr2_1:64232310-64232329 Msa0217350:CDS 40.0%
TCATCGTCAACATTCTTGGA+GGG - chr2_1:64232337-64232356 None:intergenic 40.0%
TTCATCGTCAACATTCTTGG+AGG - chr2_1:64232338-64232357 None:intergenic 40.0%
!! GGATTATTAGGGCTTGTTAG+TGG + chr2_1:64232461-64232480 Msa0217350:three_prime_UTR 40.0%
GGAAAATACGCTGAACGTGT+TGG + chr2_1:64231556-64231575 Msa0217350:CDS 45.0%
AGCGGCAAGATACTCAAGTA+CGG - chr2_1:64231608-64231627 None:intergenic 45.0%
!! GGTGATGGAAATTACCTCAG+CGG - chr2_1:64231626-64231645 None:intergenic 45.0%
TCGAAGAATAAGAGCGGTGA+TGG - chr2_1:64231641-64231660 None:intergenic 45.0%
TGTGCCAAGGCACATTCAAT+TGG + chr2_1:64232204-64232223 Msa0217350:CDS 45.0%
ACAGCCAATTGAATGTGCCT+TGG - chr2_1:64232211-64232230 None:intergenic 45.0%
!! TCTTCATCAATGGCGGGTAG+AGG + chr2_1:64231433-64231452 Msa0217350:exon 50.0%
CTCCTTGAGGTAGCCTTCTT+GGG - chr2_1:64231481-64231500 None:intergenic 50.0%
ACTCCTTGAGGTAGCCTTCT+TGG - chr2_1:64231482-64231501 None:intergenic 50.0%
TACCTCAAGGAGTAGCAAGG+CGG + chr2_1:64231489-64231508 Msa0217350:CDS 50.0%
GGCAAGATACTCAAGTACGG+CGG - chr2_1:64231605-64231624 None:intergenic 50.0%
ACTTGAGTATCTTGCCGCTG+AGG + chr2_1:64231609-64231628 Msa0217350:CDS 50.0%
AATTGGCTGGAAATGCGGCA+AGG + chr2_1:64232161-64232180 Msa0217350:CDS 50.0%
ATTGGCTGGAAATGCGGCAA+GGG + chr2_1:64232162-64232181 Msa0217350:CDS 50.0%
GGCACATTCAATTGGCTGTG+AGG + chr2_1:64232212-64232231 Msa0217350:CDS 50.0%
TTGGAGGGACCAGCTTTCTT+TGG - chr2_1:64232322-64232341 None:intergenic 50.0%
!! CTTGGGAGCACTGGAACCTA+GGG - chr2_1:64231464-64231483 None:intergenic 55.0%
!! TCTTGGGAGCACTGGAACCT+AGG - chr2_1:64231465-64231484 None:intergenic 55.0%
AGGTTCCAGTGCTCCCAAGA+AGG + chr2_1:64231465-64231484 Msa0217350:CDS 55.0%
CTCCCAAGAAGGCTACCTCA+AGG + chr2_1:64231476-64231495 Msa0217350:CDS 55.0%
GGCTACCTCAAGGAGTAGCA+AGG + chr2_1:64231486-64231505 Msa0217350:CDS 55.0%
ACCTCAAGGAGTAGCAAGGC+GGG + chr2_1:64231490-64231509 Msa0217350:CDS 55.0%
CCTTGAGGAACCGAGCGATA+CGG - chr2_1:64231534-64231553 None:intergenic 55.0%
! CAGCGTATTTTCCGGCCTTG+AGG - chr2_1:64231549-64231568 None:intergenic 55.0%
! TACGCTGAACGTGTTGGTGC+TGG + chr2_1:64231562-64231581 Msa0217350:CDS 55.0%
GCGGGTAGAGGCAAATCCCT+AGG + chr2_1:64231445-64231464 Msa0217350:CDS 60.0%
! GGTAGCCTTCTTGGGAGCAC+TGG - chr2_1:64231473-64231492 None:intergenic 60.0%
ACCCGCCTTGCTACTCCTTG+AGG - chr2_1:64231494-64231513 None:intergenic 60.0%
GCGGGTCTTCAATTCCCCGT+TGG + chr2_1:64231508-64231527 Msa0217350:CDS 60.0%
AACCGAGCGATACGGCCAAC+GGG - chr2_1:64231526-64231545 None:intergenic 60.0%
GAACCGAGCGATACGGCCAA+CGG - chr2_1:64231527-64231546 None:intergenic 60.0%
CCGTATCGCTCGGTTCCTCA+AGG + chr2_1:64231531-64231550 Msa0217350:CDS 60.0%
ATCGCTCGGTTCCTCAAGGC+CGG + chr2_1:64231535-64231554 Msa0217350:CDS 60.0%
AGTACGGCGGCGAGGTAAAC+AGG - chr2_1:64231592-64231611 None:intergenic 60.0%
GATACTCAAGTACGGCGGCG+AGG - chr2_1:64231600-64231619 None:intergenic 60.0%
TCCCCGTTGGCCGTATCGCT+CGG + chr2_1:64231521-64231540 Msa0217350:CDS 65.0%
ACCGAGCGATACGGCCAACG+GGG - chr2_1:64231525-64231544 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 64231353 64232678 64231353 ID=Msa0217350;Name=Msa0217350
chr2_1 mRNA 64231353 64232678 64231353 ID=Msa0217350-mRNA-1;Parent=Msa0217350;Name=Msa0217350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89|1|1|1|1|1|2|318|131
chr2_1 exon 64231353 64231630 64231353 ID=Msa0217350-mRNA-1:exon:17769;Parent=Msa0217350-mRNA-1
chr2_1 exon 64232154 64232678 64232154 ID=Msa0217350-mRNA-1:exon:17770;Parent=Msa0217350-mRNA-1
chr2_1 five_prime_UTR 64231353 64231441 64231353 ID=Msa0217350-mRNA-1:five_prime_utr;Parent=Msa0217350-mRNA-1
chr2_1 CDS 64231442 64231630 64231442 ID=Msa0217350-mRNA-1:cds;Parent=Msa0217350-mRNA-1
chr2_1 CDS 64232154 64232360 64232154 ID=Msa0217350-mRNA-1:cds;Parent=Msa0217350-mRNA-1
chr2_1 three_prime_UTR 64232361 64232678 64232361 ID=Msa0217350-mRNA-1:three_prime_utr;Parent=Msa0217350-mRNA-1
Gene Sequence

>Msa0217350

ATGGCGGGTAGAGGCAAATCCCTAGGTTCCAGTGCTCCCAAGAAGGCTACCTCAAGGAGTAGCAAGGCGGGTCTTCAATTCCCCGTTGGCCGTATCGCTCGGTTCCTCAAGGCCGGAAAATACGCTGAACGTGTTGGTGCTGGTGCTCCTGTTTACCTCGCCGCCGTACTTGAGTATCTTGCCGCTGAGGTTTTGGAATTGGCTGGAAATGCGGCAAGGGACAACAAGAAGACAAGAATTGTGCCAAGGCACATTCAATTGGCTGTGAGGAACGATGAAGAATTGAGCAAGCTTCTTGGTGATGTTACCATTGCTAATGGTGGTGTTATGCCCAATATTCACAACTTGTTGCTTCCAAAGAAAGCTGGTCCCTCCAAGAATGTTGACGATGAATGA

Protein sequence

>Msa0217350

MAGRGKSLGSSAPKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGPSKNVDDE*