Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217930 | XP_013464830.1 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.02e-93 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217930 | sp|Q9LXT3|MBF1B_ARATH | 81.159 | 138 | 26 | 0 | 3 | 140 | 5 | 142 | 7.43e-81 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217930 | I3SZT9 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 4.89e-94 | 277 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0217930 | TR | MBF1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0217930 | Msa0867580 | 0.964583 | 1.646970e-123 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217930 | MtrunA17_Chr2g0320211 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 9.42e-98 | 277 |
| Msa0217930 | MtrunA17_Chr4g0041301 | 92.754 | 138 | 10 | 0 | 3 | 140 | 5 | 142 | 2.10e-84 | 243 |
| Msa0217930 | MtrunA17_Chr6g0485281 | 50.000 | 114 | 57 | 0 | 3 | 116 | 10 | 123 | 3.53e-33 | 113 |
| Msa0217930 | MtrunA17_Chr6g0457491 | 90.909 | 55 | 5 | 0 | 86 | 140 | 1 | 55 | 3.81e-29 | 100 |
| Msa0217930 | MtrunA17_Chr7g0275831 | 95.000 | 40 | 2 | 0 | 90 | 129 | 1 | 40 | 1.54e-20 | 79.3 |
| Msa0217930 | MtrunA17_Chr4g0057871 | 55.844 | 77 | 21 | 1 | 30 | 93 | 9 | 85 | 1.94e-18 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217930 | AT3G58680.1 | 81.159 | 138 | 26 | 0 | 3 | 140 | 5 | 142 | 7.55e-82 | 237 |
| Msa0217930 | AT2G42680.1 | 82.609 | 138 | 24 | 0 | 3 | 140 | 5 | 142 | 2.07e-81 | 236 |
| Msa0217930 | AT3G24500.1 | 51.799 | 139 | 65 | 1 | 3 | 139 | 7 | 145 | 2.42e-44 | 142 |
| Msa0217930 | AT3G24500.2 | 44.944 | 89 | 47 | 1 | 3 | 89 | 7 | 95 | 3.52e-17 | 72.0 |
Find 60 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCAATGATCTGCTGATT+TGG | 0.246748 | 2_1:-64919276 | None:intergenic |
| TTTCTTCATGGTTTCGATAT+CGG | 0.259177 | 2_1:-64916242 | None:intergenic |
| ATCCTTCCTGGCAGCGGCGG+TGG | 0.288753 | 2_1:-64916185 | None:intergenic |
| TTGTTGCGTTGAGTCGGTAT+AGG | 0.295025 | 2_1:-64916077 | None:intergenic |
| ATGGTTGAATGGTTTGAATT+TGG | 0.300458 | 2_1:-64916109 | None:intergenic |
| GACAGCTTTGTCATCCTTCC+TGG | 0.316434 | 2_1:-64916197 | None:intergenic |
| TTTGAACAGGTGAAAGCTTC+AGG | 0.336840 | 2_1:-64919471 | None:intergenic |
| TCTGATAGAATCTTGAAATC+TGG | 0.358683 | 2_1:+64919636 | Msa0217930:three_prime_UTR |
| CAGGACCCGTTTCACAAGAT+TGG | 0.366530 | 2_1:+64916134 | Msa0217930:CDS |
| TGTTGCGTTGAGTCGGTATA+GGG | 0.383171 | 2_1:-64916076 | None:intergenic |
| GACTTGTTTGCGCAGATGAT+CGG | 0.384244 | 2_1:+64919031 | Msa0217930:intron |
| GTGATCCAGGAGTACGAGTC+AGG | 0.396136 | 2_1:+64919243 | Msa0217930:CDS |
| TCCTTCCTGGCAGCGGCGGT+GGG | 0.408929 | 2_1:-64916184 | None:intergenic |
| CGGGTCCTGCCATGGTTGAA+TGG | 0.418153 | 2_1:-64916120 | None:intergenic |
| AGAAGCTCAACGTTTCTTCA+TGG | 0.430879 | 2_1:-64916254 | None:intergenic |
| TCATTTCTTCCCACGCAGTT+TGG | 0.431740 | 2_1:-64919319 | None:intergenic |
| AAATGAGAAAGCTAATTTGA+TGG | 0.438169 | 2_1:+64919336 | Msa0217930:exon |
| GCACTTCATTGAACACTAAG+AGG | 0.438741 | 2_1:+64917745 | Msa0217930:CDS |
| AGGACCCGTTTCACAAGATT+GGG | 0.440017 | 2_1:+64916135 | Msa0217930:CDS |
| GGCAAGTTGGAGAGAGCTCT+TGG | 0.442294 | 2_1:+64919294 | Msa0217930:CDS |
| AAGCTCCCACCGCCGCTGCC+AGG | 0.442991 | 2_1:+64916179 | Msa0217930:CDS |
| GTCAACGCCGCTCGTCGTGC+CGG | 0.452741 | 2_1:+64916217 | Msa0217930:CDS |
| AGTAAGCTTCTTGTCCATCC+TGG | 0.456590 | 2_1:-64919088 | None:intergenic |
| ATGAATAGATGATGATAAAG+TGG | 0.456615 | 2_1:-64916014 | None:intergenic |
| ACTTGTTTGCGCAGATGATC+GGG | 0.459972 | 2_1:+64919032 | Msa0217930:intron |
| CTTTCCCTGACTCGTACTCC+TGG | 0.461120 | 2_1:-64919248 | None:intergenic |
| TTGATGGCTGTGTATGTAGT+TGG | 0.462014 | 2_1:+64919352 | Msa0217930:three_prime_UTR |
| ATTCCAAATCAGCAGATCAT+TGG | 0.464427 | 2_1:+64919273 | Msa0217930:CDS |
| GGTTCCCAATCTTGTGAAAC+GGG | 0.465547 | 2_1:-64916139 | None:intergenic |
| GCTTTCTTGCGGAGGACGAC+GGG | 0.478528 | 2_1:-64916160 | None:intergenic |
| ATAGCTTTCTTGAGTTCAGT+TGG | 0.482895 | 2_1:-64919057 | None:intergenic |
| TAGCTTTCTTGAGTTCAGTT+GGG | 0.492776 | 2_1:-64919056 | None:intergenic |
| TGAGAAGCCTCAAGTGATCC+AGG | 0.497642 | 2_1:+64919230 | Msa0217930:CDS |
| TCAGCAGATCATTGGCAAGT+TGG | 0.510535 | 2_1:+64919281 | Msa0217930:CDS |
| GGGTTCCCAATCTTGTGAAA+CGG | 0.516848 | 2_1:-64916140 | None:intergenic |
| TCCCACCGCCGCTGCCAGGA+AGG | 0.517927 | 2_1:+64916183 | Msa0217930:CDS |
| TTGGGGTTGTTGCGTTGAGT+CGG | 0.518287 | 2_1:-64916083 | None:intergenic |
| TTTGTCATCCTTCCTGGCAG+CGG | 0.537196 | 2_1:-64916191 | None:intergenic |
| AGAAAGCTATAATGCAAGCC+AGG | 0.541759 | 2_1:+64919070 | Msa0217930:CDS |
| AGCTTTCTTGCGGAGGACGA+CGG | 0.546703 | 2_1:-64916161 | None:intergenic |
| CACTGTTGAAGCTAATCTGA+CGG | 0.550465 | 2_1:+64919385 | Msa0217930:three_prime_UTR |
| AATGATCTGCTGATTTGGAA+TGG | 0.551980 | 2_1:-64919271 | None:intergenic |
| AGCTATAATGCAAGCCAGGA+TGG | 0.555000 | 2_1:+64919074 | Msa0217930:CDS |
| CGGCGGTGGGAGCTTTCTTG+CGG | 0.555292 | 2_1:-64916171 | None:intergenic |
| CATGGTTTCGATATCGGCAC+CGG | 0.557535 | 2_1:-64916236 | None:intergenic |
| CTCTTGGTGCCAAACTGCGT+GGG | 0.558179 | 2_1:+64919310 | Msa0217930:CDS |
| TCAAACCATTCAACCATGGC+AGG | 0.558509 | 2_1:+64916115 | Msa0217930:exon |
| GTCATCCTTCCTGGCAGCGG+CGG | 0.565962 | 2_1:-64916188 | None:intergenic |
| GCATGTTCAATCCCTTGTCA+CGG | 0.566045 | 2_1:-64919551 | None:intergenic |
| ATCTGACGGCTGTTATGTAG+TGG | 0.575710 | 2_1:+64919399 | Msa0217930:three_prime_UTR |
| CGGTGGGAGCTTTCTTGCGG+AGG | 0.580235 | 2_1:-64916168 | None:intergenic |
| TTGTGAAACGGGTCCTGCCA+TGG | 0.588651 | 2_1:-64916128 | None:intergenic |
| ATCGGCACCGGCACGACGAG+CGG | 0.589916 | 2_1:-64916224 | None:intergenic |
| GCTCTTGGTGCCAAACTGCG+TGG | 0.608518 | 2_1:+64919309 | Msa0217930:CDS |
| TGATCCAGGAGTACGAGTCA+GGG | 0.620671 | 2_1:+64919244 | Msa0217930:CDS |
| TCGTACTCCTGGATCACTTG+AGG | 0.629262 | 2_1:-64919237 | None:intergenic |
| GAACACTAAGAGGCTTGATG+AGG | 0.646364 | 2_1:+64917755 | Msa0217930:CDS |
| CATGCAAAAGCAACCAACCA+AGG | 0.651424 | 2_1:-64919440 | None:intergenic |
| GATGGACAAGAAGCTTACTC+AGG | 0.656852 | 2_1:+64919092 | Msa0217930:CDS |
| AAATTCAAACCATTCAACCA+TGG | 0.668938 | 2_1:+64916111 | Msa0217930:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTATTTTAATAAACGA+AGG | - | chr2_1:64916353-64916372 | None:intergenic | 10.0% |
| !!! | AAATAATAAATGTTTTTTCT+TGG | + | chr2_1:64916512-64916531 | Msa0217930:intron | 10.0% |
| !!! | TTTTTTTTTCAAATTATTGT+CGG | - | chr2_1:64916689-64916708 | None:intergenic | 10.0% |
| !! | TTGTTTCAATATTATAAAAT+GGG | - | chr2_1:64917833-64917852 | None:intergenic | 10.0% |
| !!! | TTTTATTATAAATTATGAAG+AGG | + | chr2_1:64918695-64918714 | Msa0217930:intron | 10.0% |
| !! | ATTGTTGATATTTCTTATTA+GGG | + | chr2_1:64916428-64916447 | Msa0217930:intron | 15.0% |
| !!! | GTTGTTTCAATATTATAAAA+TGG | - | chr2_1:64917834-64917853 | None:intergenic | 15.0% |
| !! | AAAATTCATATTCTTTATCT+GGG | + | chr2_1:64918181-64918200 | Msa0217930:intron | 15.0% |
| !! | TTGTAGAAAAATATTTGATT+AGG | - | chr2_1:64918642-64918661 | None:intergenic | 15.0% |
| !! | GATTAAAGAAATGAAAGAAA+AGG | - | chr2_1:64916282-64916301 | None:intergenic | 20.0% |
| !!! | TAATTTGTTAAATCACTGTT+TGG | + | chr2_1:64916405-64916424 | Msa0217930:intron | 20.0% |
| !! | GATTGTTGATATTTCTTATT+AGG | + | chr2_1:64916427-64916446 | Msa0217930:intron | 20.0% |
| !! | CTATTAATATGATGTGTTTA+AGG | + | chr2_1:64916575-64916594 | Msa0217930:intron | 20.0% |
| !!! | TATGTTTTCATATGTTATCT+TGG | + | chr2_1:64916870-64916889 | Msa0217930:intron | 20.0% |
| !! | GAAAAAAATAATAGAGTAAC+CGG | - | chr2_1:64917807-64917826 | None:intergenic | 20.0% |
| !! | TTCAATATTATAAAATGGGA+AGG | - | chr2_1:64917829-64917848 | None:intergenic | 20.0% |
| !! | ATATCTTCCATAATTAATTG+TGG | + | chr2_1:64918003-64918022 | Msa0217930:intron | 20.0% |
| !! | ATGAATTCCACAATTAATTA+TGG | - | chr2_1:64918013-64918032 | None:intergenic | 20.0% |
| !! | GAAAATTCATATTCTTTATC+TGG | + | chr2_1:64918180-64918199 | Msa0217930:intron | 20.0% |
| !! | AAAAATATTTGATTAGGATG+GGG | - | chr2_1:64918636-64918655 | None:intergenic | 20.0% |
| !! | GAAAAATATTTGATTAGGAT+GGG | - | chr2_1:64918637-64918656 | None:intergenic | 20.0% |
| !! | AGAAAAATATTTGATTAGGA+TGG | - | chr2_1:64918638-64918657 | None:intergenic | 20.0% |
| !! | TATAATAAAATTGCATTTGC+AGG | - | chr2_1:64918685-64918704 | None:intergenic | 20.0% |
| !!! | TTTATATATTTTACTGTCCT+TGG | + | chr2_1:64919423-64919442 | Msa0217930:three_prime_UTR | 20.0% |
| ! | ATGAATAGATGATGATAAAG+TGG | - | chr2_1:64916017-64916036 | None:intergenic | 25.0% |
| !!! | ATGGTTTGAATTTGGTTTTT+GGG | - | chr2_1:64916104-64916123 | None:intergenic | 25.0% |
| !!! | AATGGTTTGAATTTGGTTTT+TGG | - | chr2_1:64916105-64916124 | None:intergenic | 25.0% |
| ! | TTTCAATAATCCAGAGTTTA+GGG | - | chr2_1:64917021-64917040 | None:intergenic | 25.0% |
| !! | TTTTCAATAATCCAGAGTTT+AGG | - | chr2_1:64917022-64917041 | None:intergenic | 25.0% |
| ! | TATAACACGAGATAAAAGAA+AGG | + | chr2_1:64917158-64917177 | Msa0217930:intron | 25.0% |
| ! | GTAATACATCTATATACACA+GGG | - | chr2_1:64917924-64917943 | None:intergenic | 25.0% |
| ! | AGTAATACATCTATATACAC+AGG | - | chr2_1:64917925-64917944 | None:intergenic | 25.0% |
| ! | GTGTATATAGATGTATTACT+AGG | + | chr2_1:64917925-64917944 | Msa0217930:intron | 25.0% |
| !! | TTCATATTCTTTTACTAGCT+TGG | + | chr2_1:64918028-64918047 | Msa0217930:intron | 25.0% |
| !! | ACAATATTCTTTTATTAGCC+TGG | + | chr2_1:64918081-64918100 | Msa0217930:intron | 25.0% |
| !! | ATGCATTTTTATAATTGCTG+TGG | - | chr2_1:64918736-64918755 | None:intergenic | 25.0% |
| ! | ACTTATGTATTTACAAAGAG+AGG | + | chr2_1:64918844-64918863 | Msa0217930:intron | 25.0% |
| ! | CTTATGTATTTACAAAGAGA+GGG | + | chr2_1:64918845-64918864 | Msa0217930:intron | 25.0% |
| ! | TTATGTATTTACAAAGAGAG+GGG | + | chr2_1:64918846-64918865 | Msa0217930:intron | 25.0% |
| ! | TCAAGACAAAAAAACATATG+TGG | - | chr2_1:64919154-64919173 | None:intergenic | 25.0% |
| ! | AAATGAGAAAGCTAATTTGA+TGG | + | chr2_1:64919336-64919355 | Msa0217930:exon | 25.0% |
| !! | TAGTTAGTAATTTTCATCTG+TGG | + | chr2_1:64919594-64919613 | Msa0217930:three_prime_UTR | 25.0% |
| !!! | TGGTTTGAATTTGGTTTTTG+GGG | - | chr2_1:64916103-64916122 | None:intergenic | 30.0% |
| ATGGTTGAATGGTTTGAATT+TGG | - | chr2_1:64916112-64916131 | None:intergenic | 30.0% | |
| AAATTCAAACCATTCAACCA+TGG | + | chr2_1:64916111-64916130 | Msa0217930:exon | 30.0% | |
| TTTCTTCATGGTTTCGATAT+CGG | - | chr2_1:64916245-64916264 | None:intergenic | 30.0% | |
| ! | TAAGTATCGTTAACCCTATT+AGG | + | chr2_1:64916312-64916331 | Msa0217930:intron | 30.0% |
| CGAATTTCGAAATCCTAATA+GGG | - | chr2_1:64916328-64916347 | None:intergenic | 30.0% | |
| ACGAATTTCGAAATCCTAAT+AGG | - | chr2_1:64916329-64916348 | None:intergenic | 30.0% | |
| ! | TTCTTGGTGATAATCTTTCA+TGG | + | chr2_1:64916528-64916547 | Msa0217930:intron | 30.0% |
| ! | AATATGATGTGTTTAAGGCA+CGG | + | chr2_1:64916580-64916599 | Msa0217930:intron | 30.0% |
| TTGAATGTAATCACATACGA+CGG | + | chr2_1:64916726-64916745 | Msa0217930:intron | 30.0% | |
| AAAGTCCTACGTCAAATTTA+GGG | - | chr2_1:64917496-64917515 | None:intergenic | 30.0% | |
| ! | AAACAACATTTTGCAACTCT+TGG | + | chr2_1:64917847-64917866 | Msa0217930:intron | 30.0% |
| ! | AACAACATTTTGCAACTCTT+GGG | + | chr2_1:64917848-64917867 | Msa0217930:intron | 30.0% |
| ! | TATTACTAGGTGCTAACTTT+TGG | + | chr2_1:64917938-64917957 | Msa0217930:intron | 30.0% |
| TGGAATATCATAAGACTGTT+TGG | + | chr2_1:64917965-64917984 | Msa0217930:intron | 30.0% | |
| CTTAATGTGGATATAACATG+TGG | + | chr2_1:64918052-64918071 | Msa0217930:intron | 30.0% | |
| AAATTGAGCAAAGTAAATCC+AGG | - | chr2_1:64918102-64918121 | None:intergenic | 30.0% | |
| ! | GGATTTACTTTGCTCAATTT+TGG | + | chr2_1:64918102-64918121 | Msa0217930:intron | 30.0% |
| GAATATCGTATGAAAGTTCA+TGG | + | chr2_1:64918124-64918143 | Msa0217930:intron | 30.0% | |
| ! | CCAAACTATGAAGACATTTT+TGG | - | chr2_1:64918314-64918333 | None:intergenic | 30.0% |
| CCAAAAATGTCTTCATAGTT+TGG | + | chr2_1:64918311-64918330 | Msa0217930:intron | 30.0% | |
| AATGTCCACCAATTATCAAA+GGG | - | chr2_1:64918383-64918402 | None:intergenic | 30.0% | |
| TAATGTCCACCAATTATCAA+AGG | - | chr2_1:64918384-64918403 | None:intergenic | 30.0% | |
| TGTTGTTAAAGGGAATACAT+GGG | - | chr2_1:64918549-64918568 | None:intergenic | 30.0% | |
| ! | TCTGAATCAGTGTTGTTAAA+GGG | - | chr2_1:64918559-64918578 | None:intergenic | 30.0% |
| AATGGATCAAAACCTAAAAC+TGG | - | chr2_1:64918916-64918935 | None:intergenic | 30.0% | |
| !! | ATCCTGACTAGAATTTTTAG+TGG | + | chr2_1:64918942-64918961 | Msa0217930:intron | 30.0% |
| TTCCACTAAAAATTCTAGTC+AGG | - | chr2_1:64918947-64918966 | None:intergenic | 30.0% | |
| GGTATGGCTCTTATATAAAA+GGG | - | chr2_1:64918978-64918997 | None:intergenic | 30.0% | |
| AGGTATGGCTCTTATATAAA+AGG | - | chr2_1:64918979-64918998 | None:intergenic | 30.0% | |
| !! | ATAAGCATTCAAGTTGAAAG+AGG | - | chr2_1:64918999-64919018 | None:intergenic | 30.0% |
| ! | TATATTTTACTGTCCTTGGT+TGG | + | chr2_1:64919427-64919446 | Msa0217930:three_prime_UTR | 30.0% |
| TCTGATAGAATCTTGAAATC+TGG | + | chr2_1:64919636-64919655 | Msa0217930:three_prime_UTR | 30.0% | |
| ! | AAGCACTAGTCTGACTATTA+AGG | - | chr2_1:64916959-64916978 | None:intergenic | 35.0% |
| TTGAATGTAACCACATGTGT+TGG | + | chr2_1:64917052-64917071 | Msa0217930:intron | 35.0% | |
| !!! | GCTGTTTTTGTAAGCTATCT+TGG | + | chr2_1:64917208-64917227 | Msa0217930:intron | 35.0% |
| !! | GTTGTTTTCGTAAGCAATCT+TGG | + | chr2_1:64917344-64917363 | Msa0217930:intron | 35.0% |
| AAGCACTTGTATGACTATGA+AGG | - | chr2_1:64917434-64917453 | None:intergenic | 35.0% | |
| ! | AATTTAGGGCATGTTTGGAT+TGG | - | chr2_1:64917482-64917501 | None:intergenic | 35.0% |
| CAAAGTCCTACGTCAAATTT+AGG | - | chr2_1:64917497-64917516 | None:intergenic | 35.0% | |
| CTAAATTTGACGTAGGACTT+TGG | + | chr2_1:64917495-64917514 | Msa0217930:intron | 35.0% | |
| ! | ACAACATTTTGCAACTCTTG+GGG | + | chr2_1:64917849-64917868 | Msa0217930:intron | 35.0% |
| TGTATGTATTCCTAATGTCC+TGG | + | chr2_1:64917893-64917912 | Msa0217930:intron | 35.0% | |
| !!! | AGGTGCTAACTTTTGGAATT+TGG | + | chr2_1:64917945-64917964 | Msa0217930:intron | 35.0% |
| ! | TTACTAGCTTGGACTTAATG+TGG | + | chr2_1:64918039-64918058 | Msa0217930:intron | 35.0% |
| TCATATTCTTTATCTGGGCT+TGG | + | chr2_1:64918186-64918205 | Msa0217930:intron | 35.0% | |
| CATATTCTTTATCTGGGCTT+GGG | + | chr2_1:64918187-64918206 | Msa0217930:intron | 35.0% | |
| ATGTCCACCAATTATCAAAG+GGG | - | chr2_1:64918382-64918401 | None:intergenic | 35.0% | |
| !! | ATTAAGAGCAGTGTTGGTAA+TGG | + | chr2_1:64918410-64918429 | Msa0217930:intron | 35.0% |
| GTTGTTAAAGGGAATACATG+GGG | - | chr2_1:64918548-64918567 | None:intergenic | 35.0% | |
| ! | GTGTTGTTAAAGGGAATACA+TGG | - | chr2_1:64918550-64918569 | None:intergenic | 35.0% |
| ! | CTCTGAATCAGTGTTGTTAA+AGG | - | chr2_1:64918560-64918579 | None:intergenic | 35.0% |
| ATTATGAAGAGGTAGTAGTG+TGG | + | chr2_1:64918706-64918725 | Msa0217930:intron | 35.0% | |
| ! | TCTGCTGTTATACCAGTTTT+AGG | + | chr2_1:64918901-64918920 | Msa0217930:intron | 35.0% |
| TCTAGTCAGGATAGAGAAAA+TGG | - | chr2_1:64918934-64918953 | None:intergenic | 35.0% | |
| !! | CATTCAAGTTGAAAGAGGTA+TGG | - | chr2_1:64918994-64919013 | None:intergenic | 35.0% |
| GAATGCTTATACCTAGTAAC+TGG | + | chr2_1:64919009-64919028 | Msa0217930:intron | 35.0% | |
| TAGCTTTCTTGAGTTCAGTT+GGG | - | chr2_1:64919059-64919078 | None:intergenic | 35.0% | |
| ATAGCTTTCTTGAGTTCAGT+TGG | - | chr2_1:64919060-64919079 | None:intergenic | 35.0% | |
| !! | AATGATCTGCTGATTTGGAA+TGG | - | chr2_1:64919274-64919293 | None:intergenic | 35.0% |
| ATTCCAAATCAGCAGATCAT+TGG | + | chr2_1:64919273-64919292 | Msa0217930:CDS | 35.0% | |
| !!! | TGCAGCATTAAGTTTTGAAC+AGG | - | chr2_1:64919487-64919506 | None:intergenic | 35.0% |
| !! | CTTACTTTTAACCGTGACAA+GGG | + | chr2_1:64919540-64919559 | Msa0217930:three_prime_UTR | 35.0% |
| AGAAGCTCAACGTTTCTTCA+TGG | - | chr2_1:64916257-64916276 | None:intergenic | 40.0% | |
| ! | AGTTTAGGGCATGATTGGAT+TGG | - | chr2_1:64917007-64917026 | None:intergenic | 40.0% |
| GTGTCAGTGCTAGAAAATGT+CGG | + | chr2_1:64917078-64917097 | Msa0217930:intron | 40.0% | |
| ! | TTATGATCGAAGGCATGTCT+GGG | - | chr2_1:64917106-64917125 | None:intergenic | 40.0% |
| ATGCCTTCGATCATAAGTGT+TGG | + | chr2_1:64917110-64917129 | Msa0217930:intron | 40.0% | |
| ! | CGTCAAATTTAGGGCATGTT+TGG | - | chr2_1:64917487-64917506 | None:intergenic | 40.0% |
| ACATGCCCTAAATTTGACGT+AGG | + | chr2_1:64917488-64917507 | Msa0217930:intron | 40.0% | |
| GACGTAGGACTTTGGATTAT+TGG | + | chr2_1:64917503-64917522 | Msa0217930:intron | 40.0% | |
| !!! | CATTGATTCGCTCCATTTTC+TGG | + | chr2_1:64917649-64917668 | Msa0217930:intron | 40.0% |
| GCACTTCATTGAACACTAAG+AGG | + | chr2_1:64917745-64917764 | Msa0217930:CDS | 40.0% | |
| ! | CAACATTTTGCAACTCTTGG+GGG | + | chr2_1:64917850-64917869 | Msa0217930:intron | 40.0% |
| ! | AACATTTTGCAACTCTTGGG+GGG | + | chr2_1:64917851-64917870 | Msa0217930:intron | 40.0% |
| !! | TGGGGGGTTTAACTTTTACA+AGG | + | chr2_1:64917867-64917886 | Msa0217930:intron | 40.0% |
| TATATACACAGGGAAACACC+AGG | - | chr2_1:64917914-64917933 | None:intergenic | 40.0% | |
| ! | CCAATTATCAAAGGGGGTAT+TGG | - | chr2_1:64918375-64918394 | None:intergenic | 40.0% |
| ! | CCAATACCCCCTTTGATAAT+TGG | + | chr2_1:64918372-64918391 | Msa0217930:intron | 40.0% |
| ! | ATACCCCCTTTGATAATTGG+TGG | + | chr2_1:64918375-64918394 | Msa0217930:intron | 40.0% |
| TGTCCACCAATTATCAAAGG+GGG | - | chr2_1:64918381-64918400 | None:intergenic | 40.0% | |
| GTCTAGATTAAGAGCAGTGT+TGG | + | chr2_1:64918404-64918423 | Msa0217930:intron | 40.0% | |
| !!! | GCAAATTTTTTGACAGCCTC+CGG | - | chr2_1:64918515-64918534 | None:intergenic | 40.0% |
| AAAGGGAATACATGGGGAAA+TGG | - | chr2_1:64918542-64918561 | None:intergenic | 40.0% | |
| AGAAAGCTATAATGCAAGCC+AGG | + | chr2_1:64919070-64919089 | Msa0217930:CDS | 40.0% | |
| ACATATGTGGTGAGTGAAGT+CGG | - | chr2_1:64919141-64919160 | None:intergenic | 40.0% | |
| ! | TTGCCAATGATCTGCTGATT+TGG | - | chr2_1:64919279-64919298 | None:intergenic | 40.0% |
| ! | TTGATGGCTGTGTATGTAGT+TGG | + | chr2_1:64919352-64919371 | Msa0217930:three_prime_UTR | 40.0% |
| CACTGTTGAAGCTAATCTGA+CGG | + | chr2_1:64919385-64919404 | Msa0217930:three_prime_UTR | 40.0% | |
| TTTGAACAGGTGAAAGCTTC+AGG | - | chr2_1:64919474-64919493 | None:intergenic | 40.0% | |
| !! | GCTTACTTTTAACCGTGACA+AGG | + | chr2_1:64919539-64919558 | Msa0217930:three_prime_UTR | 40.0% |
| TGTTGCGTTGAGTCGGTATA+GGG | - | chr2_1:64916079-64916098 | None:intergenic | 45.0% | |
| TTGTTGCGTTGAGTCGGTAT+AGG | - | chr2_1:64916080-64916099 | None:intergenic | 45.0% | |
| TCAAACCATTCAACCATGGC+AGG | + | chr2_1:64916115-64916134 | Msa0217930:exon | 45.0% | |
| AGGACCCGTTTCACAAGATT+GGG | + | chr2_1:64916135-64916154 | Msa0217930:CDS | 45.0% | |
| GGTTCCCAATCTTGTGAAAC+GGG | - | chr2_1:64916142-64916161 | None:intergenic | 45.0% | |
| GGGTTCCCAATCTTGTGAAA+CGG | - | chr2_1:64916143-64916162 | None:intergenic | 45.0% | |
| ! | GATGTGTTTAAGGCACGGTA+TGG | + | chr2_1:64916585-64916604 | Msa0217930:intron | 45.0% |
| TCCAATCATGCCCTAAACTC+TGG | + | chr2_1:64917008-64917027 | Msa0217930:intron | 45.0% | |
| ! | TCCAGAGTTTAGGGCATGAT+TGG | - | chr2_1:64917012-64917031 | None:intergenic | 45.0% |
| ! | TATGATCGAAGGCATGTCTG+GGG | - | chr2_1:64917105-64917124 | None:intergenic | 45.0% |
| ! | CTTATGATCGAAGGCATGTC+TGG | - | chr2_1:64917107-64917126 | None:intergenic | 45.0% |
| GCACCAACACTTATGATCGA+AGG | - | chr2_1:64917116-64917135 | None:intergenic | 45.0% | |
| ! | ATGCCTTCGATCAGAAGTGT+TGG | + | chr2_1:64917248-64917267 | Msa0217930:intron | 45.0% |
| TCAGCACTCTGACCAGAAAA+TGG | - | chr2_1:64917664-64917683 | None:intergenic | 45.0% | |
| !! | GTCAGAGTGCTGATTGTGTT+GGG | + | chr2_1:64917671-64917690 | Msa0217930:intron | 45.0% |
| GAACACTAAGAGGCTTGATG+AGG | + | chr2_1:64917755-64917774 | Msa0217930:CDS | 45.0% | |
| ! | GAATTTAGCTCGTGAGTCTC+CGG | + | chr2_1:64917785-64917804 | Msa0217930:intron | 45.0% |
| !! | AAGAGCAGTGTTGGTAATGG+TGG | + | chr2_1:64918413-64918432 | Msa0217930:intron | 45.0% |
| !! | GTGTTCATATGGCGGAGTTT+TGG | - | chr2_1:64918443-64918462 | None:intergenic | 45.0% |
| GGCATTCCTTCTCAAATTGC+CGG | + | chr2_1:64918493-64918512 | Msa0217930:intron | 45.0% | |
| ATTCCTTCTCAAATTGCCGG+AGG | + | chr2_1:64918496-64918515 | Msa0217930:intron | 45.0% | |
| GCATTTGCAGGCAACAAGAT+AGG | - | chr2_1:64918673-64918692 | None:intergenic | 45.0% | |
| CGCAAACAAGTCCAGTTACT+AGG | - | chr2_1:64919023-64919042 | None:intergenic | 45.0% | |
| ! | GACTTGTTTGCGCAGATGAT+CGG | + | chr2_1:64919031-64919050 | Msa0217930:intron | 45.0% |
| ACTTGTTTGCGCAGATGATC+GGG | + | chr2_1:64919032-64919051 | Msa0217930:intron | 45.0% | |
| AGCTATAATGCAAGCCAGGA+TGG | + | chr2_1:64919074-64919093 | Msa0217930:CDS | 45.0% | |
| AGTAAGCTTCTTGTCCATCC+TGG | - | chr2_1:64919091-64919110 | None:intergenic | 45.0% | |
| GATGGACAAGAAGCTTACTC+AGG | + | chr2_1:64919092-64919111 | Msa0217930:CDS | 45.0% | |
| TCAGCAGATCATTGGCAAGT+TGG | + | chr2_1:64919281-64919300 | Msa0217930:CDS | 45.0% | |
| TCATTTCTTCCCACGCAGTT+TGG | - | chr2_1:64919322-64919341 | None:intergenic | 45.0% | |
| ATCTGACGGCTGTTATGTAG+TGG | + | chr2_1:64919399-64919418 | Msa0217930:three_prime_UTR | 45.0% | |
| CATGCAAAAGCAACCAACCA+AGG | - | chr2_1:64919443-64919462 | None:intergenic | 45.0% | |
| GCATGTTCAATCCCTTGTCA+CGG | - | chr2_1:64919554-64919573 | None:intergenic | 45.0% | |
| TTGGGGTTGTTGCGTTGAGT+CGG | - | chr2_1:64916086-64916105 | None:intergenic | 50.0% | |
| CAGGACCCGTTTCACAAGAT+TGG | + | chr2_1:64916134-64916153 | Msa0217930:CDS | 50.0% | |
| TTTGTCATCCTTCCTGGCAG+CGG | - | chr2_1:64916194-64916213 | None:intergenic | 50.0% | |
| ! | GACAGCTTTGTCATCCTTCC+TGG | - | chr2_1:64916200-64916219 | None:intergenic | 50.0% |
| CATGGTTTCGATATCGGCAC+CGG | - | chr2_1:64916239-64916258 | None:intergenic | 50.0% | |
| ! | ACGCCTTCGATCAGAAGTGT+CGG | + | chr2_1:64916779-64916798 | Msa0217930:intron | 50.0% |
| CTGACACACACCAACACATG+TGG | - | chr2_1:64917065-64917084 | None:intergenic | 50.0% | |
| GCTCCAACACTTCTGATCGA+AGG | - | chr2_1:64917254-64917273 | None:intergenic | 50.0% | |
| !! | GGTCAGAGTGCTGATTGTGT+TGG | + | chr2_1:64917670-64917689 | Msa0217930:intron | 50.0% |
| CAGGGAAACACCAGGACATT+AGG | - | chr2_1:64917906-64917925 | None:intergenic | 50.0% | |
| ATCTGGGCTTGGGATTACTG+TGG | + | chr2_1:64918197-64918216 | Msa0217930:intron | 50.0% | |
| !! | GCAGTGTTGGTAATGGTGGA+AGG | + | chr2_1:64918417-64918436 | Msa0217930:intron | 50.0% |
| TTGAGAAGGAATGCCCACCA+TGG | - | chr2_1:64918488-64918507 | None:intergenic | 50.0% | |
| TGAGAAGCCTCAAGTGATCC+AGG | + | chr2_1:64919230-64919249 | Msa0217930:CDS | 50.0% | |
| TCGTACTCCTGGATCACTTG+AGG | - | chr2_1:64919240-64919259 | None:intergenic | 50.0% | |
| ! | TGATCCAGGAGTACGAGTCA+GGG | + | chr2_1:64919244-64919263 | Msa0217930:CDS | 50.0% |
| TTGTGAAACGGGTCCTGCCA+TGG | - | chr2_1:64916131-64916150 | None:intergenic | 55.0% | |
| AGCTTTCTTGCGGAGGACGA+CGG | - | chr2_1:64916164-64916183 | None:intergenic | 55.0% | |
| ! | CTTCTGATCGAAGGCGTGTC+TGG | - | chr2_1:64916776-64916795 | None:intergenic | 55.0% |
| ! | GCACCGACACTTCTGATCGA+AGG | - | chr2_1:64916785-64916804 | None:intergenic | 55.0% |
| TCCGCCATATGAACACGCCA+TGG | + | chr2_1:64918447-64918466 | Msa0217930:intron | 55.0% | |
| GCCATGGCGTGTTCATATGG+CGG | - | chr2_1:64918451-64918470 | None:intergenic | 55.0% | |
| GCCATATGAACACGCCATGG+CGG | + | chr2_1:64918450-64918469 | Msa0217930:intron | 55.0% | |
| CAGCCTCCGGCAATTTGAGA+AGG | - | chr2_1:64918502-64918521 | None:intergenic | 55.0% | |
| ! | GTGATCCAGGAGTACGAGTC+AGG | + | chr2_1:64919243-64919262 | Msa0217930:CDS | 55.0% |
| ! | CTTTCCCTGACTCGTACTCC+TGG | - | chr2_1:64919251-64919270 | None:intergenic | 55.0% |
| ! | GGCAAGTTGGAGAGAGCTCT+TGG | + | chr2_1:64919294-64919313 | Msa0217930:CDS | 55.0% |
| !! | CTCTTGGTGCCAAACTGCGT+GGG | + | chr2_1:64919310-64919329 | Msa0217930:CDS | 55.0% |
| CGGGTCCTGCCATGGTTGAA+TGG | - | chr2_1:64916123-64916142 | None:intergenic | 60.0% | |
| GCTTTCTTGCGGAGGACGAC+GGG | - | chr2_1:64916163-64916182 | None:intergenic | 60.0% | |
| GCCGCCATGGCGTGTTCATA+TGG | - | chr2_1:64918454-64918473 | None:intergenic | 60.0% | |
| !! | GCCTATGGTGCTGCCATGGT+GGG | + | chr2_1:64918472-64918491 | Msa0217930:intron | 60.0% |
| !! | GCTCTTGGTGCCAAACTGCG+TGG | + | chr2_1:64919309-64919328 | Msa0217930:CDS | 60.0% |
| CGGTGGGAGCTTTCTTGCGG+AGG | - | chr2_1:64916171-64916190 | None:intergenic | 65.0% | |
| CGGCGGTGGGAGCTTTCTTG+CGG | - | chr2_1:64916174-64916193 | None:intergenic | 65.0% | |
| GTCATCCTTCCTGGCAGCGG+CGG | - | chr2_1:64916191-64916210 | None:intergenic | 65.0% | |
| GAACACGCCATGGCGGCCTA+TGG | + | chr2_1:64918457-64918476 | Msa0217930:intron | 65.0% | |
| !! | GGCCTATGGTGCTGCCATGG+TGG | + | chr2_1:64918471-64918490 | Msa0217930:intron | 65.0% |
| GCCCACCATGGCAGCACCAT+AGG | - | chr2_1:64918476-64918495 | None:intergenic | 65.0% | |
| TCCTTCCTGGCAGCGGCGGT+GGG | - | chr2_1:64916187-64916206 | None:intergenic | 70.0% | |
| ATCCTTCCTGGCAGCGGCGG+TGG | - | chr2_1:64916188-64916207 | None:intergenic | 70.0% | |
| GTCAACGCCGCTCGTCGTGC+CGG | + | chr2_1:64916217-64916236 | Msa0217930:CDS | 70.0% | |
| !! | ATCGGCACCGGCACGACGAG+CGG | - | chr2_1:64916227-64916246 | None:intergenic | 70.0% |
| GGCAGCACCATAGGCCGCCA+TGG | - | chr2_1:64918467-64918486 | None:intergenic | 70.0% | |
| !! | GGCGGCCTATGGTGCTGCCA+TGG | + | chr2_1:64918468-64918487 | Msa0217930:intron | 70.0% |
| AAGCTCCCACCGCCGCTGCC+AGG | + | chr2_1:64916179-64916198 | Msa0217930:CDS | 75.0% | |
| TCCCACCGCCGCTGCCAGGA+AGG | + | chr2_1:64916183-64916202 | Msa0217930:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 64916003 | 64919685 | 64916003 | ID=Msa0217930;Name=Msa0217930 |
| chr2_1 | mRNA | 64916003 | 64919685 | 64916003 | ID=Msa0217930-mRNA-1;Parent=Msa0217930;Name=Msa0217930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=127|1|1|1|1|1|4|344|140 |
| chr2_1 | exon | 64916003 | 64916265 | 64916003 | ID=Msa0217930-mRNA-1:exon:18048;Parent=Msa0217930-mRNA-1 |
| chr2_1 | exon | 64917712 | 64917795 | 64917712 | ID=Msa0217930-mRNA-1:exon:18049;Parent=Msa0217930-mRNA-1 |
| chr2_1 | exon | 64919046 | 64919128 | 64919046 | ID=Msa0217930-mRNA-1:exon:18050;Parent=Msa0217930-mRNA-1 |
| chr2_1 | exon | 64919222 | 64919685 | 64919222 | ID=Msa0217930-mRNA-1:exon:18051;Parent=Msa0217930-mRNA-1 |
| chr2_1 | five_prime_UTR | 64916003 | 64916129 | 64916003 | ID=Msa0217930-mRNA-1:five_prime_utr;Parent=Msa0217930-mRNA-1 |
| chr2_1 | CDS | 64916130 | 64916265 | 64916130 | ID=Msa0217930-mRNA-1:cds;Parent=Msa0217930-mRNA-1 |
| chr2_1 | CDS | 64917712 | 64917795 | 64917712 | ID=Msa0217930-mRNA-1:cds;Parent=Msa0217930-mRNA-1 |
| chr2_1 | CDS | 64919046 | 64919128 | 64919046 | ID=Msa0217930-mRNA-1:cds;Parent=Msa0217930-mRNA-1 |
| chr2_1 | CDS | 64919222 | 64919341 | 64919222 | ID=Msa0217930-mRNA-1:cds;Parent=Msa0217930-mRNA-1 |
| chr2_1 | three_prime_UTR | 64919342 | 64919685 | 64919342 | ID=Msa0217930-mRNA-1:three_prime_utr;Parent=Msa0217930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
