AlfalfaGEDB | Msa0867580

M. sativa cultivar zhongmu-4 / Msa0867580

KEGG: K03627
GO: GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF08523.13

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867580	XP_013464830.1	98.571	140	2	0	1	140	1	140	1.02e-93	277

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867580	sp\|Q9LXT3\|MBF1B_ARATH	81.159	138	26	0	3	140	5	142	7.43e-81	237

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867580	I3SZT9	98.571	140	2	0	1	140	1	140	4.89e-94	277

TFs/TRs:

Gene ID	Type	Classification
Msa0867580	TR	MBF1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0217930	Msa0867580	0.964583	1.646970e-123	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867580	MtrunA17_Chr2g0320211	98.571	140	2	0	1	140	1	140	9.42e-98	277
Msa0867580	MtrunA17_Chr4g0041301	92.754	138	10	0	3	140	5	142	2.10e-84	243
Msa0867580	MtrunA17_Chr6g0485281	50.000	114	57	0	3	116	10	123	3.53e-33	113
Msa0867580	MtrunA17_Chr6g0457491	90.909	55	5	0	86	140	1	55	3.81e-29	100
Msa0867580	MtrunA17_Chr7g0275831	95.000	40	2	0	90	129	1	40	1.54e-20	79.3
Msa0867580	MtrunA17_Chr4g0057871	55.844	77	21	1	30	93	9	85	1.94e-18	75.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867580	AT3G58680.1	81.159	138	26	0	3	140	5	142	7.55e-82	237
Msa0867580	AT2G42680.1	82.609	138	24	0	3	140	5	142	2.07e-81	236
Msa0867580	AT3G24500.1	51.799	139	65	1	3	139	7	145	2.42e-44	142
Msa0867580	AT3G24500.2	44.944	89	47	1	3	89	7	95	3.52e-17	72.0

Find 60 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGCCAATGATCTGCTGATT+TGG	0.246748	6_1:+576711	None:intergenic
TTTCTTCATGGTTTCGATAT+CGG	0.259177	6_1:+579745	None:intergenic
ATCCTTCCTGGCAGCGGCGG+TGG	0.288753	6_1:+579802	None:intergenic
TTGTTGCGTTGAGTCGGTAT+AGG	0.295025	6_1:+579910	None:intergenic
ATGGTTGAATGGTTTGAATT+TGG	0.300458	6_1:+579878	None:intergenic
GACAGCTTTGTCATCCTTCC+TGG	0.316434	6_1:+579790	None:intergenic
TTTGAACAGGTGAAAGCTTC+AGG	0.336840	6_1:+576516	None:intergenic
TCTGATAGAATCTTGAAATC+TGG	0.358683	6_1:-576351	Msa0867580:three_prime_UTR
CAGGACCCGTTTCACAAGAT+TGG	0.366530	6_1:-579853	Msa0867580:CDS
TGTTGCGTTGAGTCGGTATA+GGG	0.383171	6_1:+579911	None:intergenic
GACTTGTTTGCGCAGATGAT+CGG	0.384244	6_1:-576956	Msa0867580:intron
GTGATCCAGGAGTACGAGTC+AGG	0.396136	6_1:-576744	Msa0867580:CDS
TCCTTCCTGGCAGCGGCGGT+GGG	0.408929	6_1:+579803	None:intergenic
CGGGTCCTGCCATGGTTGAA+TGG	0.418153	6_1:+579867	None:intergenic
AGAAGCTCAACGTTTCTTCA+TGG	0.430879	6_1:+579733	None:intergenic
TCATTTCTTCCCACGCAGTT+TGG	0.431740	6_1:+576668	None:intergenic
AAATGAGAAAGCTAATTTGA+TGG	0.438169	6_1:-576651	Msa0867580:exon
GCACTTCATTGAACACTAAG+AGG	0.438741	6_1:-578242	Msa0867580:CDS
AGGACCCGTTTCACAAGATT+GGG	0.440017	6_1:-579852	Msa0867580:CDS
GGCAAGTTGGAGAGAGCTCT+TGG	0.442294	6_1:-576693	Msa0867580:CDS
AAGCTCCCACCGCCGCTGCC+AGG	0.442991	6_1:-579808	Msa0867580:CDS
GTCAACGCCGCTCGTCGTGC+CGG	0.452741	6_1:-579770	Msa0867580:CDS
AGTAAGCTTCTTGTCCATCC+TGG	0.456590	6_1:+576899	None:intergenic
ATGAATAGATGATGATAAAG+TGG	0.456615	6_1:+579973	None:intergenic
ACTTGTTTGCGCAGATGATC+GGG	0.459972	6_1:-576955	Msa0867580:intron
CTTTCCCTGACTCGTACTCC+TGG	0.461120	6_1:+576739	None:intergenic
TTGATGGCTGTGTATGTAGT+TGG	0.462014	6_1:-576635	Msa0867580:three_prime_UTR
ATTCCAAATCAGCAGATCAT+TGG	0.464427	6_1:-576714	Msa0867580:CDS
GGTTCCCAATCTTGTGAAAC+GGG	0.465547	6_1:+579848	None:intergenic
GCTTTCTTGCGGAGGACGAC+GGG	0.478528	6_1:+579827	None:intergenic
ATAGCTTTCTTGAGTTCAGT+TGG	0.482895	6_1:+576930	None:intergenic
TAGCTTTCTTGAGTTCAGTT+GGG	0.492776	6_1:+576931	None:intergenic
TGAGAAGCCTCAAGTGATCC+AGG	0.497642	6_1:-576757	Msa0867580:CDS
TCAGCAGATCATTGGCAAGT+TGG	0.510535	6_1:-576706	Msa0867580:CDS
GGGTTCCCAATCTTGTGAAA+CGG	0.516848	6_1:+579847	None:intergenic
TCCCACCGCCGCTGCCAGGA+AGG	0.517927	6_1:-579804	Msa0867580:CDS
TTGGGGTTGTTGCGTTGAGT+CGG	0.518287	6_1:+579904	None:intergenic
TTTGTCATCCTTCCTGGCAG+CGG	0.537196	6_1:+579796	None:intergenic
AGAAAGCTATAATGCAAGCC+AGG	0.541759	6_1:-576917	Msa0867580:CDS
AGCTTTCTTGCGGAGGACGA+CGG	0.546703	6_1:+579826	None:intergenic
CACTGTTGAAGCTAATCTGA+CGG	0.550465	6_1:-576602	Msa0867580:three_prime_UTR
AATGATCTGCTGATTTGGAA+TGG	0.551980	6_1:+576716	None:intergenic
AGCTATAATGCAAGCCAGGA+TGG	0.555000	6_1:-576913	Msa0867580:CDS
CGGCGGTGGGAGCTTTCTTG+CGG	0.555292	6_1:+579816	None:intergenic
CATGGTTTCGATATCGGCAC+CGG	0.557535	6_1:+579751	None:intergenic
CTCTTGGTGCCAAACTGCGT+GGG	0.558179	6_1:-576677	Msa0867580:CDS
TCAAACCATTCAACCATGGC+AGG	0.558509	6_1:-579872	Msa0867580:exon
GTCATCCTTCCTGGCAGCGG+CGG	0.565962	6_1:+579799	None:intergenic
GCATGTTCAATCCCTTGTCA+CGG	0.566045	6_1:+576436	None:intergenic
ATCTGACGGCTGTTATGTAG+TGG	0.575710	6_1:-576588	Msa0867580:three_prime_UTR
CGGTGGGAGCTTTCTTGCGG+AGG	0.580235	6_1:+579819	None:intergenic
TTGTGAAACGGGTCCTGCCA+TGG	0.588651	6_1:+579859	None:intergenic
ATCGGCACCGGCACGACGAG+CGG	0.589916	6_1:+579763	None:intergenic
GCTCTTGGTGCCAAACTGCG+TGG	0.608518	6_1:-576678	Msa0867580:CDS
TGATCCAGGAGTACGAGTCA+GGG	0.620671	6_1:-576743	Msa0867580:CDS
TCGTACTCCTGGATCACTTG+AGG	0.629262	6_1:+576750	None:intergenic
GAACACTAAGAGGCTTGATG+AGG	0.646364	6_1:-578232	Msa0867580:CDS
CATGCAAAAGCAACCAACCA+AGG	0.651424	6_1:+576547	None:intergenic
GATGGACAAGAAGCTTACTC+AGG	0.656852	6_1:-576895	Msa0867580:CDS
AAATTCAAACCATTCAACCA+TGG	0.668938	6_1:-579876	Msa0867580:exon

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAATTTATTTTAATAAACGA+AGG	+	chr6_1:576674-576693	None:intergenic	10.0%
!!!	AAATAATAAATGTTTTTTCT+TGG	-	chr6_1:576833-576852	Msa0867580:intron	10.0%
!!!	TTTTTTTTTCAAATTATTGT+CGG	+	chr6_1:577010-577029	None:intergenic	10.0%
!!	TTGTTTCAATATTATAAAAT+GGG	+	chr6_1:578154-578173	None:intergenic	10.0%
!!!	TTTTATTATAAATTATGAAG+AGG	-	chr6_1:579016-579035	Msa0867580:intron	10.0%
!!	ATTGTTGATATTTCTTATTA+GGG	-	chr6_1:576749-576768	Msa0867580:CDS	15.0%
!!!	GTTGTTTCAATATTATAAAA+TGG	+	chr6_1:578155-578174	None:intergenic	15.0%
!!	AAAATTCATATTCTTTATCT+GGG	-	chr6_1:578502-578521	Msa0867580:intron	15.0%
!!	TTGTAGAAAAATATTTGATT+AGG	+	chr6_1:578963-578982	None:intergenic	15.0%
!!	GATTAAAGAAATGAAAGAAA+AGG	+	chr6_1:576603-576622	None:intergenic	20.0%
!!!	TAATTTGTTAAATCACTGTT+TGG	-	chr6_1:576726-576745	Msa0867580:CDS	20.0%
!!	GATTGTTGATATTTCTTATT+AGG	-	chr6_1:576748-576767	Msa0867580:CDS	20.0%
!!	CTATTAATATGATGTGTTTA+AGG	-	chr6_1:576896-576915	Msa0867580:CDS	20.0%
!!!	TATGTTTTCATATGTTATCT+TGG	-	chr6_1:577191-577210	Msa0867580:intron	20.0%
!!	GAAAAAAATAATAGAGTAAC+CGG	+	chr6_1:578128-578147	None:intergenic	20.0%
!!	TTCAATATTATAAAATGGGA+AGG	+	chr6_1:578150-578169	None:intergenic	20.0%
!!	ATATCTTCCATAATTAATTG+TGG	-	chr6_1:578324-578343	Msa0867580:intron	20.0%
!!	ATGAATTCCACAATTAATTA+TGG	+	chr6_1:578334-578353	None:intergenic	20.0%
!!	GAAAATTCATATTCTTTATC+TGG	-	chr6_1:578501-578520	Msa0867580:intron	20.0%
!!	AAAAATATTTGATTAGGATG+GGG	+	chr6_1:578957-578976	None:intergenic	20.0%
!!	GAAAAATATTTGATTAGGAT+GGG	+	chr6_1:578958-578977	None:intergenic	20.0%
!!	AGAAAAATATTTGATTAGGA+TGG	+	chr6_1:578959-578978	None:intergenic	20.0%
!!	TATAATAAAATTGCATTTGC+AGG	+	chr6_1:579006-579025	None:intergenic	20.0%
!!!	TTTATATATTTTACTGTCCT+TGG	-	chr6_1:579744-579763	Msa0867580:CDS	20.0%
!	ATGAATAGATGATGATAAAG+TGG	+	chr6_1:576338-576357	None:intergenic	25.0%
!!!	ATGGTTTGAATTTGGTTTTT+GGG	+	chr6_1:576425-576444	None:intergenic	25.0%
!!!	AATGGTTTGAATTTGGTTTT+TGG	+	chr6_1:576426-576445	None:intergenic	25.0%
!	TTTCAATAATCCAGAGTTTA+GGG	+	chr6_1:577342-577361	None:intergenic	25.0%
!!	TTTTCAATAATCCAGAGTTT+AGG	+	chr6_1:577343-577362	None:intergenic	25.0%
!	TATAACACGAGATAAAAGAA+AGG	-	chr6_1:577479-577498	Msa0867580:intron	25.0%
!	GTAATACATCTATATACACA+GGG	+	chr6_1:578245-578264	None:intergenic	25.0%
!	AGTAATACATCTATATACAC+AGG	+	chr6_1:578246-578265	None:intergenic	25.0%
!	GTGTATATAGATGTATTACT+AGG	-	chr6_1:578246-578265	Msa0867580:CDS	25.0%
!!	TTCATATTCTTTTACTAGCT+TGG	-	chr6_1:578349-578368	Msa0867580:intron	25.0%
!!	ACAATATTCTTTTATTAGCC+TGG	-	chr6_1:578402-578421	Msa0867580:intron	25.0%
!!	ATGCATTTTTATAATTGCTG+TGG	+	chr6_1:579057-579076	None:intergenic	25.0%
!	ACTTATGTATTTACAAAGAG+AGG	-	chr6_1:579165-579184	Msa0867580:intron	25.0%
!	CTTATGTATTTACAAAGAGA+GGG	-	chr6_1:579166-579185	Msa0867580:intron	25.0%
!	TTATGTATTTACAAAGAGAG+GGG	-	chr6_1:579167-579186	Msa0867580:intron	25.0%
!	TCAAGACAAAAAAACATATG+TGG	+	chr6_1:579475-579494	None:intergenic	25.0%
!	AAATGAGAAAGCTAATTTGA+TGG	-	chr6_1:579657-579676	Msa0867580:intron	25.0%
!!	TAGTTAGTAATTTTCATCTG+TGG	-	chr6_1:579915-579934	Msa0867580:five_prime_UTR	25.0%
!!!	TGGTTTGAATTTGGTTTTTG+GGG	+	chr6_1:576424-576443	None:intergenic	30.0%
	ATGGTTGAATGGTTTGAATT+TGG	+	chr6_1:576433-576452	None:intergenic	30.0%
	AAATTCAAACCATTCAACCA+TGG	-	chr6_1:576432-576451	Msa0867580:three_prime_UTR	30.0%
	TTTCTTCATGGTTTCGATAT+CGG	+	chr6_1:576566-576585	None:intergenic	30.0%
!	TAAGTATCGTTAACCCTATT+AGG	-	chr6_1:576633-576652	Msa0867580:three_prime_UTR	30.0%
	CGAATTTCGAAATCCTAATA+GGG	+	chr6_1:576649-576668	None:intergenic	30.0%
	ACGAATTTCGAAATCCTAAT+AGG	+	chr6_1:576650-576669	None:intergenic	30.0%
!	TTCTTGGTGATAATCTTTCA+TGG	-	chr6_1:576849-576868	Msa0867580:intron	30.0%
!	AATATGATGTGTTTAAGGCA+CGG	-	chr6_1:576901-576920	Msa0867580:CDS	30.0%
	TTGAATGTAATCACATACGA+CGG	-	chr6_1:577047-577066	Msa0867580:intron	30.0%
	AAAGTCCTACGTCAAATTTA+GGG	+	chr6_1:577817-577836	None:intergenic	30.0%
!	AAACAACATTTTGCAACTCT+TGG	-	chr6_1:578168-578187	Msa0867580:intron	30.0%
!	AACAACATTTTGCAACTCTT+GGG	-	chr6_1:578169-578188	Msa0867580:intron	30.0%
!	TATTACTAGGTGCTAACTTT+TGG	-	chr6_1:578259-578278	Msa0867580:CDS	30.0%
	TGGAATATCATAAGACTGTT+TGG	-	chr6_1:578286-578305	Msa0867580:intron	30.0%
	CTTAATGTGGATATAACATG+TGG	-	chr6_1:578373-578392	Msa0867580:intron	30.0%
	AAATTGAGCAAAGTAAATCC+AGG	+	chr6_1:578423-578442	None:intergenic	30.0%
!	GGATTTACTTTGCTCAATTT+TGG	-	chr6_1:578423-578442	Msa0867580:intron	30.0%
	GAATATCGTATGAAAGTTCA+TGG	-	chr6_1:578445-578464	Msa0867580:intron	30.0%
!	CCAAACTATGAAGACATTTT+TGG	+	chr6_1:578635-578654	None:intergenic	30.0%
	CCAAAAATGTCTTCATAGTT+TGG	-	chr6_1:578632-578651	Msa0867580:intron	30.0%
	AATGTCCACCAATTATCAAA+GGG	+	chr6_1:578704-578723	None:intergenic	30.0%
	TAATGTCCACCAATTATCAA+AGG	+	chr6_1:578705-578724	None:intergenic	30.0%
	TGTTGTTAAAGGGAATACAT+GGG	+	chr6_1:578870-578889	None:intergenic	30.0%
!	TCTGAATCAGTGTTGTTAAA+GGG	+	chr6_1:578880-578899	None:intergenic	30.0%
	AATGGATCAAAACCTAAAAC+TGG	+	chr6_1:579237-579256	None:intergenic	30.0%
!!	ATCCTGACTAGAATTTTTAG+TGG	-	chr6_1:579263-579282	Msa0867580:intron	30.0%
	TTCCACTAAAAATTCTAGTC+AGG	+	chr6_1:579268-579287	None:intergenic	30.0%
	GGTATGGCTCTTATATAAAA+GGG	+	chr6_1:579299-579318	None:intergenic	30.0%
	AGGTATGGCTCTTATATAAA+AGG	+	chr6_1:579300-579319	None:intergenic	30.0%
!!	ATAAGCATTCAAGTTGAAAG+AGG	+	chr6_1:579320-579339	None:intergenic	30.0%
!	TATATTTTACTGTCCTTGGT+TGG	-	chr6_1:579748-579767	Msa0867580:CDS	30.0%
	TCTGATAGAATCTTGAAATC+TGG	-	chr6_1:579957-579976	Msa0867580:five_prime_UTR	30.0%
!	AAGCACTAGTCTGACTATTA+AGG	+	chr6_1:577280-577299	None:intergenic	35.0%
	TTGAATGTAACCACATGTGT+TGG	-	chr6_1:577373-577392	Msa0867580:intron	35.0%
!!!	GCTGTTTTTGTAAGCTATCT+TGG	-	chr6_1:577529-577548	Msa0867580:intron	35.0%
!!	GTTGTTTTCGTAAGCAATCT+TGG	-	chr6_1:577665-577684	Msa0867580:intron	35.0%
	AAGCACTTGTATGACTATGA+AGG	+	chr6_1:577755-577774	None:intergenic	35.0%
!	AATTTAGGGCATGTTTGGAT+TGG	+	chr6_1:577803-577822	None:intergenic	35.0%
	CAAAGTCCTACGTCAAATTT+AGG	+	chr6_1:577818-577837	None:intergenic	35.0%
	CTAAATTTGACGTAGGACTT+TGG	-	chr6_1:577816-577835	Msa0867580:intron	35.0%
!	ACAACATTTTGCAACTCTTG+GGG	-	chr6_1:578170-578189	Msa0867580:intron	35.0%
	TGTATGTATTCCTAATGTCC+TGG	-	chr6_1:578214-578233	Msa0867580:CDS	35.0%
!!!	AGGTGCTAACTTTTGGAATT+TGG	-	chr6_1:578266-578285	Msa0867580:CDS	35.0%
!	TTACTAGCTTGGACTTAATG+TGG	-	chr6_1:578360-578379	Msa0867580:intron	35.0%
	TCATATTCTTTATCTGGGCT+TGG	-	chr6_1:578507-578526	Msa0867580:intron	35.0%
	CATATTCTTTATCTGGGCTT+GGG	-	chr6_1:578508-578527	Msa0867580:intron	35.0%
	ATGTCCACCAATTATCAAAG+GGG	+	chr6_1:578703-578722	None:intergenic	35.0%
!!	ATTAAGAGCAGTGTTGGTAA+TGG	-	chr6_1:578731-578750	Msa0867580:intron	35.0%
	GTTGTTAAAGGGAATACATG+GGG	+	chr6_1:578869-578888	None:intergenic	35.0%
!	GTGTTGTTAAAGGGAATACA+TGG	+	chr6_1:578871-578890	None:intergenic	35.0%
!	CTCTGAATCAGTGTTGTTAA+AGG	+	chr6_1:578881-578900	None:intergenic	35.0%
	ATTATGAAGAGGTAGTAGTG+TGG	-	chr6_1:579027-579046	Msa0867580:intron	35.0%
!	TCTGCTGTTATACCAGTTTT+AGG	-	chr6_1:579222-579241	Msa0867580:intron	35.0%
	TCTAGTCAGGATAGAGAAAA+TGG	+	chr6_1:579255-579274	None:intergenic	35.0%
!!	CATTCAAGTTGAAAGAGGTA+TGG	+	chr6_1:579315-579334	None:intergenic	35.0%
	GAATGCTTATACCTAGTAAC+TGG	-	chr6_1:579330-579349	Msa0867580:intron	35.0%
	TAGCTTTCTTGAGTTCAGTT+GGG	+	chr6_1:579380-579399	None:intergenic	35.0%
	ATAGCTTTCTTGAGTTCAGT+TGG	+	chr6_1:579381-579400	None:intergenic	35.0%
!!	AATGATCTGCTGATTTGGAA+TGG	+	chr6_1:579595-579614	None:intergenic	35.0%
	ATTCCAAATCAGCAGATCAT+TGG	-	chr6_1:579594-579613	Msa0867580:intron	35.0%
!!!	TGCAGCATTAAGTTTTGAAC+AGG	+	chr6_1:579808-579827	None:intergenic	35.0%
!!	CTTACTTTTAACCGTGACAA+GGG	-	chr6_1:579861-579880	Msa0867580:exon	35.0%
	AGAAGCTCAACGTTTCTTCA+TGG	+	chr6_1:576578-576597	None:intergenic	40.0%
!	AGTTTAGGGCATGATTGGAT+TGG	+	chr6_1:577328-577347	None:intergenic	40.0%
	GTGTCAGTGCTAGAAAATGT+CGG	-	chr6_1:577399-577418	Msa0867580:intron	40.0%
!	TTATGATCGAAGGCATGTCT+GGG	+	chr6_1:577427-577446	None:intergenic	40.0%
	ATGCCTTCGATCATAAGTGT+TGG	-	chr6_1:577431-577450	Msa0867580:intron	40.0%
!	CGTCAAATTTAGGGCATGTT+TGG	+	chr6_1:577808-577827	None:intergenic	40.0%
	ACATGCCCTAAATTTGACGT+AGG	-	chr6_1:577809-577828	Msa0867580:intron	40.0%
	GACGTAGGACTTTGGATTAT+TGG	-	chr6_1:577824-577843	Msa0867580:intron	40.0%
!!!	CATTGATTCGCTCCATTTTC+TGG	-	chr6_1:577970-577989	Msa0867580:intron	40.0%
	GCACTTCATTGAACACTAAG+AGG	-	chr6_1:578066-578085	Msa0867580:intron	40.0%
!	CAACATTTTGCAACTCTTGG+GGG	-	chr6_1:578171-578190	Msa0867580:intron	40.0%
!	AACATTTTGCAACTCTTGGG+GGG	-	chr6_1:578172-578191	Msa0867580:intron	40.0%
!!	TGGGGGGTTTAACTTTTACA+AGG	-	chr6_1:578188-578207	Msa0867580:intron	40.0%
	TATATACACAGGGAAACACC+AGG	+	chr6_1:578235-578254	None:intergenic	40.0%
!	CCAATTATCAAAGGGGGTAT+TGG	+	chr6_1:578696-578715	None:intergenic	40.0%
!	CCAATACCCCCTTTGATAAT+TGG	-	chr6_1:578693-578712	Msa0867580:intron	40.0%
!	ATACCCCCTTTGATAATTGG+TGG	-	chr6_1:578696-578715	Msa0867580:intron	40.0%
	TGTCCACCAATTATCAAAGG+GGG	+	chr6_1:578702-578721	None:intergenic	40.0%
	GTCTAGATTAAGAGCAGTGT+TGG	-	chr6_1:578725-578744	Msa0867580:intron	40.0%
!!!	GCAAATTTTTTGACAGCCTC+CGG	+	chr6_1:578836-578855	None:intergenic	40.0%
	AAAGGGAATACATGGGGAAA+TGG	+	chr6_1:578863-578882	None:intergenic	40.0%
	AGAAAGCTATAATGCAAGCC+AGG	-	chr6_1:579391-579410	Msa0867580:intron	40.0%
	ACATATGTGGTGAGTGAAGT+CGG	+	chr6_1:579462-579481	None:intergenic	40.0%
!	TTGCCAATGATCTGCTGATT+TGG	+	chr6_1:579600-579619	None:intergenic	40.0%
!	TTGATGGCTGTGTATGTAGT+TGG	-	chr6_1:579673-579692	Msa0867580:intron	40.0%
	CACTGTTGAAGCTAATCTGA+CGG	-	chr6_1:579706-579725	Msa0867580:intron	40.0%
	TTTGAACAGGTGAAAGCTTC+AGG	+	chr6_1:579795-579814	None:intergenic	40.0%
!!	GCTTACTTTTAACCGTGACA+AGG	-	chr6_1:579860-579879	Msa0867580:CDS	40.0%
	TGTTGCGTTGAGTCGGTATA+GGG	+	chr6_1:576400-576419	None:intergenic	45.0%
	TTGTTGCGTTGAGTCGGTAT+AGG	+	chr6_1:576401-576420	None:intergenic	45.0%
	TCAAACCATTCAACCATGGC+AGG	-	chr6_1:576436-576455	Msa0867580:three_prime_UTR	45.0%
	AGGACCCGTTTCACAAGATT+GGG	-	chr6_1:576456-576475	Msa0867580:three_prime_UTR	45.0%
	GGTTCCCAATCTTGTGAAAC+GGG	+	chr6_1:576463-576482	None:intergenic	45.0%
	GGGTTCCCAATCTTGTGAAA+CGG	+	chr6_1:576464-576483	None:intergenic	45.0%
!	GATGTGTTTAAGGCACGGTA+TGG	-	chr6_1:576906-576925	Msa0867580:CDS	45.0%
	TCCAATCATGCCCTAAACTC+TGG	-	chr6_1:577329-577348	Msa0867580:intron	45.0%
!	TCCAGAGTTTAGGGCATGAT+TGG	+	chr6_1:577333-577352	None:intergenic	45.0%
!	TATGATCGAAGGCATGTCTG+GGG	+	chr6_1:577426-577445	None:intergenic	45.0%
!	CTTATGATCGAAGGCATGTC+TGG	+	chr6_1:577428-577447	None:intergenic	45.0%
	GCACCAACACTTATGATCGA+AGG	+	chr6_1:577437-577456	None:intergenic	45.0%
!	ATGCCTTCGATCAGAAGTGT+TGG	-	chr6_1:577569-577588	Msa0867580:intron	45.0%
	TCAGCACTCTGACCAGAAAA+TGG	+	chr6_1:577985-578004	None:intergenic	45.0%
!!	GTCAGAGTGCTGATTGTGTT+GGG	-	chr6_1:577992-578011	Msa0867580:intron	45.0%
	GAACACTAAGAGGCTTGATG+AGG	-	chr6_1:578076-578095	Msa0867580:intron	45.0%
!	GAATTTAGCTCGTGAGTCTC+CGG	-	chr6_1:578106-578125	Msa0867580:intron	45.0%
!!	AAGAGCAGTGTTGGTAATGG+TGG	-	chr6_1:578734-578753	Msa0867580:intron	45.0%
!!	GTGTTCATATGGCGGAGTTT+TGG	+	chr6_1:578764-578783	None:intergenic	45.0%
	GGCATTCCTTCTCAAATTGC+CGG	-	chr6_1:578814-578833	Msa0867580:intron	45.0%
	ATTCCTTCTCAAATTGCCGG+AGG	-	chr6_1:578817-578836	Msa0867580:intron	45.0%
	GCATTTGCAGGCAACAAGAT+AGG	+	chr6_1:578994-579013	None:intergenic	45.0%
	CGCAAACAAGTCCAGTTACT+AGG	+	chr6_1:579344-579363	None:intergenic	45.0%
!	GACTTGTTTGCGCAGATGAT+CGG	-	chr6_1:579352-579371	Msa0867580:intron	45.0%
	ACTTGTTTGCGCAGATGATC+GGG	-	chr6_1:579353-579372	Msa0867580:intron	45.0%
	AGCTATAATGCAAGCCAGGA+TGG	-	chr6_1:579395-579414	Msa0867580:intron	45.0%
	AGTAAGCTTCTTGTCCATCC+TGG	+	chr6_1:579412-579431	None:intergenic	45.0%
	GATGGACAAGAAGCTTACTC+AGG	-	chr6_1:579413-579432	Msa0867580:intron	45.0%
	TCAGCAGATCATTGGCAAGT+TGG	-	chr6_1:579602-579621	Msa0867580:intron	45.0%
	TCATTTCTTCCCACGCAGTT+TGG	+	chr6_1:579643-579662	None:intergenic	45.0%
	ATCTGACGGCTGTTATGTAG+TGG	-	chr6_1:579720-579739	Msa0867580:intron	45.0%
	CATGCAAAAGCAACCAACCA+AGG	+	chr6_1:579764-579783	None:intergenic	45.0%
	GCATGTTCAATCCCTTGTCA+CGG	+	chr6_1:579875-579894	None:intergenic	45.0%
	TTGGGGTTGTTGCGTTGAGT+CGG	+	chr6_1:576407-576426	None:intergenic	50.0%
	CAGGACCCGTTTCACAAGAT+TGG	-	chr6_1:576455-576474	Msa0867580:three_prime_UTR	50.0%
	TTTGTCATCCTTCCTGGCAG+CGG	+	chr6_1:576515-576534	None:intergenic	50.0%
!	GACAGCTTTGTCATCCTTCC+TGG	+	chr6_1:576521-576540	None:intergenic	50.0%
	CATGGTTTCGATATCGGCAC+CGG	+	chr6_1:576560-576579	None:intergenic	50.0%
!	ACGCCTTCGATCAGAAGTGT+CGG	-	chr6_1:577100-577119	Msa0867580:intron	50.0%
	CTGACACACACCAACACATG+TGG	+	chr6_1:577386-577405	None:intergenic	50.0%
	GCTCCAACACTTCTGATCGA+AGG	+	chr6_1:577575-577594	None:intergenic	50.0%
!!	GGTCAGAGTGCTGATTGTGT+TGG	-	chr6_1:577991-578010	Msa0867580:intron	50.0%
	CAGGGAAACACCAGGACATT+AGG	+	chr6_1:578227-578246	None:intergenic	50.0%
	ATCTGGGCTTGGGATTACTG+TGG	-	chr6_1:578518-578537	Msa0867580:intron	50.0%
!!	GCAGTGTTGGTAATGGTGGA+AGG	-	chr6_1:578738-578757	Msa0867580:intron	50.0%
	TTGAGAAGGAATGCCCACCA+TGG	+	chr6_1:578809-578828	None:intergenic	50.0%
	TGAGAAGCCTCAAGTGATCC+AGG	-	chr6_1:579551-579570	Msa0867580:intron	50.0%
	TCGTACTCCTGGATCACTTG+AGG	+	chr6_1:579561-579580	None:intergenic	50.0%
!	TGATCCAGGAGTACGAGTCA+GGG	-	chr6_1:579565-579584	Msa0867580:intron	50.0%
	TTGTGAAACGGGTCCTGCCA+TGG	+	chr6_1:576452-576471	None:intergenic	55.0%
	AGCTTTCTTGCGGAGGACGA+CGG	+	chr6_1:576485-576504	None:intergenic	55.0%
!	CTTCTGATCGAAGGCGTGTC+TGG	+	chr6_1:577097-577116	None:intergenic	55.0%
!	GCACCGACACTTCTGATCGA+AGG	+	chr6_1:577106-577125	None:intergenic	55.0%
	TCCGCCATATGAACACGCCA+TGG	-	chr6_1:578768-578787	Msa0867580:intron	55.0%
	GCCATGGCGTGTTCATATGG+CGG	+	chr6_1:578772-578791	None:intergenic	55.0%
	GCCATATGAACACGCCATGG+CGG	-	chr6_1:578771-578790	Msa0867580:intron	55.0%
	CAGCCTCCGGCAATTTGAGA+AGG	+	chr6_1:578823-578842	None:intergenic	55.0%
!	GTGATCCAGGAGTACGAGTC+AGG	-	chr6_1:579564-579583	Msa0867580:intron	55.0%
!	CTTTCCCTGACTCGTACTCC+TGG	+	chr6_1:579572-579591	None:intergenic	55.0%
!	GGCAAGTTGGAGAGAGCTCT+TGG	-	chr6_1:579615-579634	Msa0867580:intron	55.0%
!!	CTCTTGGTGCCAAACTGCGT+GGG	-	chr6_1:579631-579650	Msa0867580:intron	55.0%
	CGGGTCCTGCCATGGTTGAA+TGG	+	chr6_1:576444-576463	None:intergenic	60.0%
	GCTTTCTTGCGGAGGACGAC+GGG	+	chr6_1:576484-576503	None:intergenic	60.0%
	GCCGCCATGGCGTGTTCATA+TGG	+	chr6_1:578775-578794	None:intergenic	60.0%
!!	GCCTATGGTGCTGCCATGGT+GGG	-	chr6_1:578793-578812	Msa0867580:intron	60.0%
!!	GCTCTTGGTGCCAAACTGCG+TGG	-	chr6_1:579630-579649	Msa0867580:intron	60.0%
	CGGTGGGAGCTTTCTTGCGG+AGG	+	chr6_1:576492-576511	None:intergenic	65.0%
	CGGCGGTGGGAGCTTTCTTG+CGG	+	chr6_1:576495-576514	None:intergenic	65.0%
	GTCATCCTTCCTGGCAGCGG+CGG	+	chr6_1:576512-576531	None:intergenic	65.0%
	GAACACGCCATGGCGGCCTA+TGG	-	chr6_1:578778-578797	Msa0867580:intron	65.0%
!!	GGCCTATGGTGCTGCCATGG+TGG	-	chr6_1:578792-578811	Msa0867580:intron	65.0%
	GCCCACCATGGCAGCACCAT+AGG	+	chr6_1:578797-578816	None:intergenic	65.0%
	TCCTTCCTGGCAGCGGCGGT+GGG	+	chr6_1:576508-576527	None:intergenic	70.0%
	ATCCTTCCTGGCAGCGGCGG+TGG	+	chr6_1:576509-576528	None:intergenic	70.0%
	GTCAACGCCGCTCGTCGTGC+CGG	-	chr6_1:576538-576557	Msa0867580:three_prime_UTR	70.0%
!!	ATCGGCACCGGCACGACGAG+CGG	+	chr6_1:576548-576567	None:intergenic	70.0%
	GGCAGCACCATAGGCCGCCA+TGG	+	chr6_1:578788-578807	None:intergenic	70.0%
!!	GGCGGCCTATGGTGCTGCCA+TGG	-	chr6_1:578789-578808	Msa0867580:intron	70.0%
	AAGCTCCCACCGCCGCTGCC+AGG	-	chr6_1:576500-576519	Msa0867580:three_prime_UTR	75.0%
	TCCCACCGCCGCTGCCAGGA+AGG	-	chr6_1:576504-576523	Msa0867580:three_prime_UTR	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	576324	580006	576324	ID=Msa0867580;Name=Msa0867580
chr6_1	mRNA	576324	580006	576324	ID=Msa0867580-mRNA-1;Parent=Msa0867580;Name=Msa0867580-mRNA-1;_AED=0.05;_eAED=0.05;_QI=127\|1\|1\|1\|1\|1\|4\|344\|140
chr6_1	exon	576324	576787	576324	ID=Msa0867580-mRNA-1:exon:174;Parent=Msa0867580-mRNA-1
chr6_1	exon	576881	576963	576881	ID=Msa0867580-mRNA-1:exon:173;Parent=Msa0867580-mRNA-1
chr6_1	exon	578214	578297	578214	ID=Msa0867580-mRNA-1:exon:172;Parent=Msa0867580-mRNA-1
chr6_1	exon	579744	580006	579744	ID=Msa0867580-mRNA-1:exon:171;Parent=Msa0867580-mRNA-1
chr6_1	five_prime_UTR	579880	580006	579880	ID=Msa0867580-mRNA-1:five_prime_utr;Parent=Msa0867580-mRNA-1
chr6_1	CDS	579744	579879	579744	ID=Msa0867580-mRNA-1:cds;Parent=Msa0867580-mRNA-1
chr6_1	CDS	578214	578297	578214	ID=Msa0867580-mRNA-1:cds;Parent=Msa0867580-mRNA-1
chr6_1	CDS	576881	576963	576881	ID=Msa0867580-mRNA-1:cds;Parent=Msa0867580-mRNA-1
chr6_1	CDS	576668	576787	576668	ID=Msa0867580-mRNA-1:cds;Parent=Msa0867580-mRNA-1
chr6_1	three_prime_UTR	576324	576667	576324	ID=Msa0867580-mRNA-1:three_prime_utr;Parent=Msa0867580-mRNA-1

Gene Sequence

>Msa0867580

ATGGCAGGACCCGTTTCACAAGATTGGGAACCCGTCGTCCTCCGCAAGAAAGCTCCCACCGCCGCTGCCAGGAAGGATGACAAAGCTGTCAACGCCGCTCGTCGTGCCGGTGCCGATATCGAAACCATGAAGAAACATAATGCTGCGACAAACAAAGCTGCTTCTAGCAGCACTTCATTGAACACTAAGAGGCTTGATGAGGATACAGAGAATTTAGCTCATGATCGGGTCCCAACTGAACTCAAGAAAGCTATAATGCAAGCCAGGATGGACAAGAAGCTTACTCAGGCACAACTTGCTCAAATTATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGGAAAGCCATTCCAAATCAGCAGATCATTGGCAAGTTGGAGAGAGCTCTTGGTGCCAAACTGCGTGGGAAGAAATGA

Protein sequence

>Msa0867580

MAGPVSQDWEPVVLRKKAPTAAARKDDKAVNAARRAGADIETMKKHNAATNKAASSSTSLNTKRLDEDTENLAHDRVPTELKKAIMQARMDKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK*