Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218180 | KEH38879.1 | 93.515 | 293 | 17 | 2 | 1 | 291 | 1 | 293 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218180 | sp|Q681X4|ZAT5_ARATH | 40.952 | 315 | 127 | 11 | 6 | 291 | 2 | 286 | 2.47e-50 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218180 | A0A396JB23 | 93.515 | 293 | 17 | 2 | 1 | 291 | 5 | 297 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0218180 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218180 | Msa0297080 | 0.806802 | 6.890354e-50 | -8.615850e-47 |
| Msa0218180 | Msa0387380 | 0.997171 | 5.040124e-238 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218180 | MtrunA17_Chr2g0320311 | 93.515 | 293 | 17 | 2 | 1 | 291 | 5 | 297 | 0.0 | 540 |
| Msa0218180 | MtrunA17_Chr4g0027991 | 43.465 | 329 | 110 | 12 | 3 | 291 | 1 | 293 | 1.46e-57 | 186 |
| Msa0218180 | MtrunA17_Chr1g0197281 | 37.419 | 310 | 138 | 10 | 15 | 283 | 18 | 312 | 3.86e-45 | 156 |
| Msa0218180 | MtrunA17_Chr1g0180311 | 40.000 | 300 | 132 | 11 | 19 | 291 | 19 | 297 | 8.20e-45 | 154 |
| Msa0218180 | MtrunA17_Chr1g0182181 | 32.870 | 216 | 75 | 7 | 64 | 277 | 4 | 151 | 1.79e-24 | 96.7 |
| Msa0218180 | MtrunA17_Chr1g0182161 | 40.506 | 158 | 49 | 4 | 125 | 277 | 39 | 156 | 6.37e-24 | 95.5 |
| Msa0218180 | MtrunA17_Chr7g0263131 | 38.889 | 162 | 58 | 6 | 115 | 275 | 26 | 147 | 2.04e-23 | 94.0 |
| Msa0218180 | MtrunA17_Chr7g0263121 | 32.870 | 216 | 82 | 6 | 62 | 277 | 6 | 158 | 5.43e-23 | 93.2 |
| Msa0218180 | MtrunA17_Chr7g0222831 | 37.931 | 174 | 44 | 5 | 71 | 244 | 12 | 121 | 1.60e-21 | 89.4 |
| Msa0218180 | MtrunA17_Chr1g0212561 | 39.007 | 141 | 51 | 3 | 108 | 246 | 26 | 133 | 2.22e-20 | 87.0 |
| Msa0218180 | MtrunA17_Chr1g0188911 | 36.527 | 167 | 75 | 5 | 122 | 271 | 41 | 193 | 2.29e-18 | 81.3 |
| Msa0218180 | MtrunA17_Chr4g0012691 | 37.500 | 152 | 65 | 5 | 125 | 272 | 220 | 345 | 8.71e-17 | 79.7 |
| Msa0218180 | MtrunA17_Chr1g0188901 | 36.025 | 161 | 80 | 4 | 113 | 271 | 46 | 185 | 1.97e-15 | 73.2 |
| Msa0218180 | MtrunA17_Chr4g0012791 | 29.614 | 233 | 127 | 6 | 67 | 272 | 158 | 380 | 2.92e-15 | 75.5 |
| Msa0218180 | MtrunA17_Chr4g0061301 | 35.754 | 179 | 59 | 7 | 125 | 279 | 348 | 494 | 3.55e-15 | 75.5 |
| Msa0218180 | MtrunA17_Chr1g0152661 | 30.732 | 205 | 92 | 4 | 67 | 271 | 39 | 193 | 7.40e-14 | 69.7 |
| Msa0218180 | MtrunA17_Chr3g0134711 | 28.767 | 219 | 91 | 6 | 60 | 271 | 41 | 201 | 2.50e-12 | 65.5 |
| Msa0218180 | MtrunA17_Chr1g0207451 | 34.667 | 150 | 60 | 4 | 125 | 272 | 83 | 196 | 9.02e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218180 | AT2G28200.1 | 40.952 | 315 | 127 | 11 | 6 | 291 | 2 | 286 | 2.51e-51 | 170 |
| Msa0218180 | AT5G03510.1 | 35.099 | 302 | 141 | 9 | 19 | 291 | 17 | 292 | 3.19e-44 | 152 |
| Msa0218180 | AT5G04390.1 | 32.115 | 383 | 134 | 13 | 10 | 291 | 5 | 362 | 2.14e-34 | 128 |
| Msa0218180 | AT3G10470.1 | 35.294 | 272 | 122 | 8 | 59 | 283 | 96 | 360 | 1.05e-26 | 108 |
| Msa0218180 | AT2G37430.1 | 33.333 | 216 | 82 | 6 | 61 | 276 | 7 | 160 | 6.16e-23 | 93.6 |
| Msa0218180 | AT3G60580.1 | 32.061 | 262 | 121 | 12 | 23 | 282 | 82 | 288 | 3.43e-19 | 85.9 |
| Msa0218180 | AT3G53600.1 | 37.908 | 153 | 50 | 4 | 125 | 276 | 49 | 157 | 3.74e-19 | 83.2 |
| Msa0218180 | AT2G45120.1 | 31.250 | 208 | 92 | 6 | 68 | 275 | 148 | 304 | 9.96e-18 | 82.0 |
| Msa0218180 | AT1G49900.1 | 35.780 | 109 | 34 | 3 | 123 | 231 | 748 | 820 | 2.31e-12 | 67.8 |
| Msa0218180 | AT3G19580.1 | 33.133 | 166 | 65 | 8 | 67 | 231 | 67 | 187 | 3.22e-12 | 65.9 |
| Msa0218180 | AT3G19580.2 | 33.133 | 166 | 65 | 8 | 67 | 231 | 67 | 187 | 3.22e-12 | 65.9 |
| Msa0218180 | AT5G67450.1 | 35.514 | 107 | 52 | 2 | 125 | 231 | 97 | 186 | 9.52e-11 | 61.2 |
Find 84 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACACCCATGAACCTTATT+AGG | 0.190387 | 2_1:-65300832 | None:intergenic |
| GGCTAATTGTTTGATTCTTC+TGG | 0.203387 | 2_1:+65300432 | Msa0218180:CDS |
| TATCAACTTCAAACCTAATA+AGG | 0.231751 | 2_1:+65300819 | Msa0218180:CDS |
| CGATTCGACGTTTCAGTTTC+CGG | 0.243464 | 2_1:+65301050 | Msa0218180:CDS |
| CTCGAGTTTCTCTTGAATTA+AGG | 0.276923 | 2_1:+65300785 | Msa0218180:CDS |
| GTCTAGGAATGTTCTTGAAT+TGG | 0.330690 | 2_1:+65300993 | Msa0218180:CDS |
| GTTGGTGGGTTGCCATTATT+AGG | 0.332911 | 2_1:+65301074 | Msa0218180:CDS |
| ATGGACATGGAAGGAATTAT+AGG | 0.340892 | 2_1:+65300220 | Msa0218180:CDS |
| AACAACGTTGGTGTTGTTAC+AGG | 0.344318 | 2_1:+65300949 | Msa0218180:CDS |
| AGCAAGAGGACTAATATTCT+TGG | 0.352029 | 2_1:-65300761 | None:intergenic |
| TGCTCAAGTGCCACTGGAGG+TGG | 0.369286 | 2_1:+65300352 | Msa0218180:CDS |
| TTCCATTCATTTCAAGCGTT+GGG | 0.375944 | 2_1:+65300619 | Msa0218180:CDS |
| TTCAAACCTAATAAGGTTCA+TGG | 0.378517 | 2_1:+65300826 | Msa0218180:CDS |
| ATCCCACGCTGGCCTAATAA+TGG | 0.380155 | 2_1:-65301086 | None:intergenic |
| TGAATTGGACCTTAACCTTC+CGG | 0.389601 | 2_1:+65301008 | Msa0218180:CDS |
| CCTCCGGTGCCGGAAGGTTA+AGG | 0.413234 | 2_1:-65301017 | None:intergenic |
| TGTTGTAACCATCCACTTGT+TGG | 0.424922 | 2_1:-65300528 | None:intergenic |
| GAAAGCGAACGAAACGGTTA+AGG | 0.426921 | 2_1:+65300284 | Msa0218180:CDS |
| CTTCTGGCTCAAGGAAGAAC+TGG | 0.439358 | 2_1:+65300448 | Msa0218180:CDS |
| AAGATGTTCATGTTAGGTCT+AGG | 0.445757 | 2_1:+65300977 | Msa0218180:CDS |
| GACGTTTCAGTTTCCGGCGT+TGG | 0.448103 | 2_1:+65301056 | Msa0218180:CDS |
| TTTCCATTCATTTCAAGCGT+TGG | 0.453765 | 2_1:+65300618 | Msa0218180:CDS |
| ATGTTCAAATTCACCGGTGG+TGG | 0.457962 | 2_1:-65300719 | None:intergenic |
| GCAAGAGGACTAATATTCTT+GGG | 0.460139 | 2_1:-65300760 | None:intergenic |
| GTAGCAGTTGCCTCGGTGAC+AGG | 0.460232 | 2_1:-65300316 | None:intergenic |
| CACCCAACGCTTGAAATGAA+TGG | 0.472542 | 2_1:-65300621 | None:intergenic |
| GAGGAACATGTTAATGATGT+TGG | 0.472717 | 2_1:+65300247 | Msa0218180:CDS |
| CCACTTGTTGGCCGTTGTTG+TGG | 0.476786 | 2_1:-65300516 | None:intergenic |
| CAACAAAATAACAATTGAAA+AGG | 0.479506 | 2_1:+65300546 | Msa0218180:CDS |
| GTTTCAGTTTCCGGCGTTGG+TGG | 0.482549 | 2_1:+65301059 | Msa0218180:CDS |
| CGGAGATCTTCCTCCGGTGC+CGG | 0.488269 | 2_1:-65301027 | None:intergenic |
| TTCACATCAGGTCAAGCATT+GGG | 0.490157 | 2_1:+65300871 | Msa0218180:CDS |
| AGGAACATGTTAATGATGTT+GGG | 0.501178 | 2_1:+65300248 | Msa0218180:CDS |
| TTTCAGTTTCCGGCGTTGGT+GGG | 0.503347 | 2_1:+65301060 | Msa0218180:CDS |
| GGACCTTAACCTTCCGGCAC+CGG | 0.507435 | 2_1:+65301014 | Msa0218180:CDS |
| TCGAGCTGCTCAAGTGCCAC+TGG | 0.507708 | 2_1:+65300346 | Msa0218180:CDS |
| TCAAGTGCCACTGGAGGTGG+TGG | 0.508718 | 2_1:+65300355 | Msa0218180:CDS |
| GGCCGTTGTTGTGGAGGTGG+TGG | 0.514785 | 2_1:-65300507 | None:intergenic |
| CATTCATTTCAAGCGTTGGG+TGG | 0.518965 | 2_1:+65300622 | Msa0218180:CDS |
| TGTGGAGCTGAATTCACATC+AGG | 0.521653 | 2_1:+65300859 | Msa0218180:CDS |
| GTTGGCCGTTGTTGTGGAGG+TGG | 0.522596 | 2_1:-65300510 | None:intergenic |
| TTCTTGCTCAGTGTCATCAA+AGG | 0.527374 | 2_1:-65300395 | None:intergenic |
| TGTTTGATTCTTCTGGCTCA+AGG | 0.533403 | 2_1:+65300439 | Msa0218180:CDS |
| TTGTCGCGGTCGCGGAGGTG+AGG | 0.537270 | 2_1:-65300692 | None:intergenic |
| ATTCACATCAGGTCAAGCAT+TGG | 0.538410 | 2_1:+65300870 | Msa0218180:CDS |
| CTTGTTGGCCGTTGTTGTGG+AGG | 0.539786 | 2_1:-65300513 | None:intergenic |
| TCAAAGGAAAGCGAACGAAA+CGG | 0.541935 | 2_1:+65300278 | Msa0218180:CDS |
| CTCAGTGTCATCAAAGGTGG+TGG | 0.547013 | 2_1:-65300389 | None:intergenic |
| GTGGTGATTTGTCGCGGTCG+CGG | 0.549407 | 2_1:-65300700 | None:intergenic |
| GCAAGAAGAGGAAGCAGACA+TGG | 0.561196 | 2_1:+65300411 | Msa0218180:CDS |
| AACATCATTAACATGTTCCT+CGG | 0.565470 | 2_1:-65300245 | None:intergenic |
| TCAAACCTAATAAGGTTCAT+GGG | 0.566961 | 2_1:+65300827 | Msa0218180:CDS |
| GTTCATGGGTGTTCAATATG+TGG | 0.567866 | 2_1:+65300841 | Msa0218180:CDS |
| TTGCTCAGTGTCATCAAAGG+TGG | 0.571081 | 2_1:-65300392 | None:intergenic |
| GATGTTGGGCACCTCATCAA+AGG | 0.576365 | 2_1:+65300262 | Msa0218180:CDS |
| CCACAACAACGGCCAACAAG+TGG | 0.585250 | 2_1:+65300516 | Msa0218180:CDS |
| AGAGAAACTCGAGGAGCAAG+AGG | 0.585638 | 2_1:-65300775 | None:intergenic |
| CCGCGACAAATCACCACCAC+CGG | 0.586036 | 2_1:+65300706 | Msa0218180:CDS |
| GTTTCTCTTGAATTAAGGTG+TGG | 0.591781 | 2_1:+65300790 | Msa0218180:CDS |
| TGATGACACTGAGCAAGAAG+AGG | 0.591813 | 2_1:+65300399 | Msa0218180:CDS |
| CCTTAACCTTCCGGCACCGG+AGG | 0.594600 | 2_1:+65301017 | Msa0218180:CDS |
| GATCTTCCTCCGGTGCCGGA+AGG | 0.594929 | 2_1:-65301023 | None:intergenic |
| TTGTCTAAAATGGACATGGA+AGG | 0.601540 | 2_1:+65300211 | None:intergenic |
| TTGTGGAGGTGGTGGTTCTG+AGG | 0.603082 | 2_1:-65300499 | None:intergenic |
| AAGCATTGGGTGGTCACATG+AGG | 0.609394 | 2_1:+65300884 | Msa0218180:CDS |
| TCGTTCGCTTTCCTTTGATG+AGG | 0.611523 | 2_1:-65300273 | None:intergenic |
| AGGAAGAACTGGAAGAGAAG+AGG | 0.615766 | 2_1:+65300459 | Msa0218180:CDS |
| TAATGGCAACCCACCAACGC+CGG | 0.618418 | 2_1:-65301069 | None:intergenic |
| GAATCGCGGAGATCTTCCTC+CGG | 0.624286 | 2_1:-65301033 | None:intergenic |
| TGTCATCGTAGCAGTTGCCT+CGG | 0.626036 | 2_1:-65300323 | None:intergenic |
| GTGATTTGTCGCGGTCGCGG+AGG | 0.628904 | 2_1:-65300697 | None:intergenic |
| AACAACGGCCAACAAGTGGA+TGG | 0.629201 | 2_1:+65300520 | Msa0218180:CDS |
| AGCTGCTCAAGTGCCACTGG+AGG | 0.629481 | 2_1:+65300349 | Msa0218180:CDS |
| TTCATGTTCAAATTCACCGG+TGG | 0.633752 | 2_1:-65300722 | None:intergenic |
| GATGTTGTCTAAAATGGACA+TGG | 0.636077 | 2_1:+65300207 | None:intergenic |
| AAACGATCCACCACCTCCAG+TGG | 0.642817 | 2_1:-65300362 | None:intergenic |
| AACCACCACCTCCACAACAA+CGG | 0.646757 | 2_1:+65300505 | Msa0218180:CDS |
| GAAACTGAAACGTCGAATCG+CGG | 0.658540 | 2_1:-65301047 | None:intergenic |
| CCGGTGGTGGTGATTTGTCG+CGG | 0.660219 | 2_1:-65300706 | None:intergenic |
| GCAGTTGTCTCCTGTCACCG+AGG | 0.674185 | 2_1:+65300306 | Msa0218180:CDS |
| ACATCAGGTCAAGCATTGGG+TGG | 0.680038 | 2_1:+65300874 | Msa0218180:CDS |
| GGTGGTGGTTCTGAGGACGA+CGG | 0.683349 | 2_1:-65300492 | None:intergenic |
| CTTAATTCAAGAGAAACTCG+AGG | 0.731434 | 2_1:-65300784 | None:intergenic |
| GGAAGGAATTATAGGCACCG+AGG | 0.764139 | 2_1:+65300228 | Msa0218180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACAAAATAACAATTGAAA+AGG | + | chr2_1:65300546-65300565 | Msa0218180:CDS | 20.0% |
| !! | CAACAAAATAACAATTGAAA+AGG | + | chr2_1:65300546-65300565 | Msa0218180:CDS | 20.0% |
| ! | ATTGAAAAGGAGACAAAAAA+CGG | + | chr2_1:65300559-65300578 | Msa0218180:CDS | 25.0% |
| ! | CTTGAAATGAATGGAAAAAA+CGG | - | chr2_1:65300615-65300634 | None:intergenic | 25.0% |
| !! | TGTTTTTCTTCTTTCATCTT+TGG | - | chr2_1:65300670-65300689 | None:intergenic | 25.0% |
| !! | ATTTTCATGTTCAAATTCAC+CGG | - | chr2_1:65300728-65300747 | None:intergenic | 25.0% |
| ! | TATCAACTTCAAACCTAATA+AGG | + | chr2_1:65300819-65300838 | Msa0218180:CDS | 25.0% |
| ! | ATTGAAAAGGAGACAAAAAA+CGG | + | chr2_1:65300559-65300578 | Msa0218180:CDS | 25.0% |
| ! | CTTGAAATGAATGGAAAAAA+CGG | - | chr2_1:65300615-65300634 | None:intergenic | 25.0% |
| !! | TGTTTTTCTTCTTTCATCTT+TGG | - | chr2_1:65300670-65300689 | None:intergenic | 25.0% |
| !! | ATTTTCATGTTCAAATTCAC+CGG | - | chr2_1:65300728-65300747 | None:intergenic | 25.0% |
| ! | TATCAACTTCAAACCTAATA+AGG | + | chr2_1:65300819-65300838 | Msa0218180:CDS | 25.0% |
| AACATCATTAACATGTTCCT+CGG | - | chr2_1:65300248-65300267 | None:intergenic | 30.0% | |
| AGGAACATGTTAATGATGTT+GGG | + | chr2_1:65300248-65300267 | Msa0218180:CDS | 30.0% | |
| TTCAAACCTAATAAGGTTCA+TGG | + | chr2_1:65300826-65300845 | Msa0218180:CDS | 30.0% | |
| TCAAACCTAATAAGGTTCAT+GGG | + | chr2_1:65300827-65300846 | Msa0218180:CDS | 30.0% | |
| AACAACAAAAACAACAACGT+TGG | + | chr2_1:65300937-65300956 | Msa0218180:CDS | 30.0% | |
| !!! | GTTTTGAAGATGTTCATGTT+AGG | + | chr2_1:65300971-65300990 | Msa0218180:CDS | 30.0% |
| AACATCATTAACATGTTCCT+CGG | - | chr2_1:65300248-65300267 | None:intergenic | 30.0% | |
| AGGAACATGTTAATGATGTT+GGG | + | chr2_1:65300248-65300267 | Msa0218180:CDS | 30.0% | |
| TTCAAACCTAATAAGGTTCA+TGG | + | chr2_1:65300826-65300845 | Msa0218180:CDS | 30.0% | |
| TCAAACCTAATAAGGTTCAT+GGG | + | chr2_1:65300827-65300846 | Msa0218180:CDS | 30.0% | |
| AACAACAAAAACAACAACGT+TGG | + | chr2_1:65300937-65300956 | Msa0218180:CDS | 30.0% | |
| !!! | GTTTTGAAGATGTTCATGTT+AGG | + | chr2_1:65300971-65300990 | Msa0218180:CDS | 30.0% |
| ATGGACATGGAAGGAATTAT+AGG | + | chr2_1:65300220-65300239 | Msa0218180:CDS | 35.0% | |
| GAGGAACATGTTAATGATGT+TGG | + | chr2_1:65300247-65300266 | Msa0218180:CDS | 35.0% | |
| GGCTAATTGTTTGATTCTTC+TGG | + | chr2_1:65300432-65300451 | Msa0218180:CDS | 35.0% | |
| TTTCCATTCATTTCAAGCGT+TGG | + | chr2_1:65300618-65300637 | Msa0218180:CDS | 35.0% | |
| TTCCATTCATTTCAAGCGTT+GGG | + | chr2_1:65300619-65300638 | Msa0218180:CDS | 35.0% | |
| GCAAGAGGACTAATATTCTT+GGG | - | chr2_1:65300763-65300782 | None:intergenic | 35.0% | |
| AGCAAGAGGACTAATATTCT+TGG | - | chr2_1:65300764-65300783 | None:intergenic | 35.0% | |
| CTTAATTCAAGAGAAACTCG+AGG | - | chr2_1:65300787-65300806 | None:intergenic | 35.0% | |
| CTCGAGTTTCTCTTGAATTA+AGG | + | chr2_1:65300785-65300804 | Msa0218180:CDS | 35.0% | |
| GTTTCTCTTGAATTAAGGTG+TGG | + | chr2_1:65300790-65300809 | Msa0218180:CDS | 35.0% | |
| AAGATGTTCATGTTAGGTCT+AGG | + | chr2_1:65300977-65300996 | Msa0218180:CDS | 35.0% | |
| GTCTAGGAATGTTCTTGAAT+TGG | + | chr2_1:65300993-65301012 | Msa0218180:CDS | 35.0% | |
| ATGGACATGGAAGGAATTAT+AGG | + | chr2_1:65300220-65300239 | Msa0218180:CDS | 35.0% | |
| GAGGAACATGTTAATGATGT+TGG | + | chr2_1:65300247-65300266 | Msa0218180:CDS | 35.0% | |
| GGCTAATTGTTTGATTCTTC+TGG | + | chr2_1:65300432-65300451 | Msa0218180:CDS | 35.0% | |
| TTTCCATTCATTTCAAGCGT+TGG | + | chr2_1:65300618-65300637 | Msa0218180:CDS | 35.0% | |
| TTCCATTCATTTCAAGCGTT+GGG | + | chr2_1:65300619-65300638 | Msa0218180:CDS | 35.0% | |
| GCAAGAGGACTAATATTCTT+GGG | - | chr2_1:65300763-65300782 | None:intergenic | 35.0% | |
| AGCAAGAGGACTAATATTCT+TGG | - | chr2_1:65300764-65300783 | None:intergenic | 35.0% | |
| CTTAATTCAAGAGAAACTCG+AGG | - | chr2_1:65300787-65300806 | None:intergenic | 35.0% | |
| CTCGAGTTTCTCTTGAATTA+AGG | + | chr2_1:65300785-65300804 | Msa0218180:CDS | 35.0% | |
| GTTTCTCTTGAATTAAGGTG+TGG | + | chr2_1:65300790-65300809 | Msa0218180:CDS | 35.0% | |
| AAGATGTTCATGTTAGGTCT+AGG | + | chr2_1:65300977-65300996 | Msa0218180:CDS | 35.0% | |
| GTCTAGGAATGTTCTTGAAT+TGG | + | chr2_1:65300993-65301012 | Msa0218180:CDS | 35.0% | |
| TCAAAGGAAAGCGAACGAAA+CGG | + | chr2_1:65300278-65300297 | Msa0218180:CDS | 40.0% | |
| TTCTTGCTCAGTGTCATCAA+AGG | - | chr2_1:65300398-65300417 | None:intergenic | 40.0% | |
| !! | TGTTTGATTCTTCTGGCTCA+AGG | + | chr2_1:65300439-65300458 | Msa0218180:CDS | 40.0% |
| TGTTGTAACCATCCACTTGT+TGG | - | chr2_1:65300531-65300550 | None:intergenic | 40.0% | |
| TTCATGTTCAAATTCACCGG+TGG | - | chr2_1:65300725-65300744 | None:intergenic | 40.0% | |
| GAACACCCATGAACCTTATT+AGG | - | chr2_1:65300835-65300854 | None:intergenic | 40.0% | |
| GTTCATGGGTGTTCAATATG+TGG | + | chr2_1:65300841-65300860 | Msa0218180:CDS | 40.0% | |
| ATTCACATCAGGTCAAGCAT+TGG | + | chr2_1:65300870-65300889 | Msa0218180:CDS | 40.0% | |
| TTCACATCAGGTCAAGCATT+GGG | + | chr2_1:65300871-65300890 | Msa0218180:CDS | 40.0% | |
| !! | AACAACGTTGGTGTTGTTAC+AGG | + | chr2_1:65300949-65300968 | Msa0218180:CDS | 40.0% |
| TGAATTGGACCTTAACCTTC+CGG | + | chr2_1:65301008-65301027 | Msa0218180:CDS | 40.0% | |
| TCAAAGGAAAGCGAACGAAA+CGG | + | chr2_1:65300278-65300297 | Msa0218180:CDS | 40.0% | |
| TTCTTGCTCAGTGTCATCAA+AGG | - | chr2_1:65300398-65300417 | None:intergenic | 40.0% | |
| !! | TGTTTGATTCTTCTGGCTCA+AGG | + | chr2_1:65300439-65300458 | Msa0218180:CDS | 40.0% |
| TGTTGTAACCATCCACTTGT+TGG | - | chr2_1:65300531-65300550 | None:intergenic | 40.0% | |
| TTCATGTTCAAATTCACCGG+TGG | - | chr2_1:65300725-65300744 | None:intergenic | 40.0% | |
| GAACACCCATGAACCTTATT+AGG | - | chr2_1:65300835-65300854 | None:intergenic | 40.0% | |
| GTTCATGGGTGTTCAATATG+TGG | + | chr2_1:65300841-65300860 | Msa0218180:CDS | 40.0% | |
| ATTCACATCAGGTCAAGCAT+TGG | + | chr2_1:65300870-65300889 | Msa0218180:CDS | 40.0% | |
| TTCACATCAGGTCAAGCATT+GGG | + | chr2_1:65300871-65300890 | Msa0218180:CDS | 40.0% | |
| !! | AACAACGTTGGTGTTGTTAC+AGG | + | chr2_1:65300949-65300968 | Msa0218180:CDS | 40.0% |
| TGAATTGGACCTTAACCTTC+CGG | + | chr2_1:65301008-65301027 | Msa0218180:CDS | 40.0% | |
| TCGTTCGCTTTCCTTTGATG+AGG | - | chr2_1:65300276-65300295 | None:intergenic | 45.0% | |
| GAAAGCGAACGAAACGGTTA+AGG | + | chr2_1:65300284-65300303 | Msa0218180:CDS | 45.0% | |
| TTGCTCAGTGTCATCAAAGG+TGG | - | chr2_1:65300395-65300414 | None:intergenic | 45.0% | |
| TGATGACACTGAGCAAGAAG+AGG | + | chr2_1:65300399-65300418 | Msa0218180:CDS | 45.0% | |
| AGGAAGAACTGGAAGAGAAG+AGG | + | chr2_1:65300459-65300478 | Msa0218180:CDS | 45.0% | |
| CACCCAACGCTTGAAATGAA+TGG | - | chr2_1:65300624-65300643 | None:intergenic | 45.0% | |
| !! | CATTCATTTCAAGCGTTGGG+TGG | + | chr2_1:65300622-65300641 | Msa0218180:CDS | 45.0% |
| ATGTTCAAATTCACCGGTGG+TGG | - | chr2_1:65300722-65300741 | None:intergenic | 45.0% | |
| TGTGGAGCTGAATTCACATC+AGG | + | chr2_1:65300859-65300878 | Msa0218180:CDS | 45.0% | |
| GAAACTGAAACGTCGAATCG+CGG | - | chr2_1:65301050-65301069 | None:intergenic | 45.0% | |
| CGATTCGACGTTTCAGTTTC+CGG | + | chr2_1:65301050-65301069 | Msa0218180:CDS | 45.0% | |
| TCGTTCGCTTTCCTTTGATG+AGG | - | chr2_1:65300276-65300295 | None:intergenic | 45.0% | |
| GAAAGCGAACGAAACGGTTA+AGG | + | chr2_1:65300284-65300303 | Msa0218180:CDS | 45.0% | |
| TTGCTCAGTGTCATCAAAGG+TGG | - | chr2_1:65300395-65300414 | None:intergenic | 45.0% | |
| TGATGACACTGAGCAAGAAG+AGG | + | chr2_1:65300399-65300418 | Msa0218180:CDS | 45.0% | |
| AGGAAGAACTGGAAGAGAAG+AGG | + | chr2_1:65300459-65300478 | Msa0218180:CDS | 45.0% | |
| CACCCAACGCTTGAAATGAA+TGG | - | chr2_1:65300624-65300643 | None:intergenic | 45.0% | |
| !! | CATTCATTTCAAGCGTTGGG+TGG | + | chr2_1:65300622-65300641 | Msa0218180:CDS | 45.0% |
| ATGTTCAAATTCACCGGTGG+TGG | - | chr2_1:65300722-65300741 | None:intergenic | 45.0% | |
| TGTGGAGCTGAATTCACATC+AGG | + | chr2_1:65300859-65300878 | Msa0218180:CDS | 45.0% | |
| GAAACTGAAACGTCGAATCG+CGG | - | chr2_1:65301050-65301069 | None:intergenic | 45.0% | |
| CGATTCGACGTTTCAGTTTC+CGG | + | chr2_1:65301050-65301069 | Msa0218180:CDS | 45.0% | |
| ! | GGAAGGAATTATAGGCACCG+AGG | + | chr2_1:65300228-65300247 | Msa0218180:CDS | 50.0% |
| GATGTTGGGCACCTCATCAA+AGG | + | chr2_1:65300262-65300281 | Msa0218180:CDS | 50.0% | |
| TGTCATCGTAGCAGTTGCCT+CGG | - | chr2_1:65300326-65300345 | None:intergenic | 50.0% | |
| CTCAGTGTCATCAAAGGTGG+TGG | - | chr2_1:65300392-65300411 | None:intergenic | 50.0% | |
| GCAAGAAGAGGAAGCAGACA+TGG | + | chr2_1:65300411-65300430 | Msa0218180:CDS | 50.0% | |
| !! | CTTCTGGCTCAAGGAAGAAC+TGG | + | chr2_1:65300448-65300467 | Msa0218180:CDS | 50.0% |
| AACCACCACCTCCACAACAA+CGG | + | chr2_1:65300505-65300524 | Msa0218180:CDS | 50.0% | |
| AACAACGGCCAACAAGTGGA+TGG | + | chr2_1:65300520-65300539 | Msa0218180:CDS | 50.0% | |
| AGAGAAACTCGAGGAGCAAG+AGG | - | chr2_1:65300778-65300797 | None:intergenic | 50.0% | |
| !! | ACATCAGGTCAAGCATTGGG+TGG | + | chr2_1:65300874-65300893 | Msa0218180:CDS | 50.0% |
| !! | AAGCATTGGGTGGTCACATG+AGG | + | chr2_1:65300884-65300903 | Msa0218180:CDS | 50.0% |
| !! | TTTCAGTTTCCGGCGTTGGT+GGG | + | chr2_1:65301060-65301079 | Msa0218180:CDS | 50.0% |
| ! | GGAAGGAATTATAGGCACCG+AGG | + | chr2_1:65300228-65300247 | Msa0218180:CDS | 50.0% |
| GATGTTGGGCACCTCATCAA+AGG | + | chr2_1:65300262-65300281 | Msa0218180:CDS | 50.0% | |
| TGTCATCGTAGCAGTTGCCT+CGG | - | chr2_1:65300326-65300345 | None:intergenic | 50.0% | |
| CTCAGTGTCATCAAAGGTGG+TGG | - | chr2_1:65300392-65300411 | None:intergenic | 50.0% | |
| GCAAGAAGAGGAAGCAGACA+TGG | + | chr2_1:65300411-65300430 | Msa0218180:CDS | 50.0% | |
| !! | CTTCTGGCTCAAGGAAGAAC+TGG | + | chr2_1:65300448-65300467 | Msa0218180:CDS | 50.0% |
| AACCACCACCTCCACAACAA+CGG | + | chr2_1:65300505-65300524 | Msa0218180:CDS | 50.0% | |
| AACAACGGCCAACAAGTGGA+TGG | + | chr2_1:65300520-65300539 | Msa0218180:CDS | 50.0% | |
| AGAGAAACTCGAGGAGCAAG+AGG | - | chr2_1:65300778-65300797 | None:intergenic | 50.0% | |
| !! | ACATCAGGTCAAGCATTGGG+TGG | + | chr2_1:65300874-65300893 | Msa0218180:CDS | 50.0% |
| !! | AAGCATTGGGTGGTCACATG+AGG | + | chr2_1:65300884-65300903 | Msa0218180:CDS | 50.0% |
| !! | TTTCAGTTTCCGGCGTTGGT+GGG | + | chr2_1:65301060-65301079 | Msa0218180:CDS | 50.0% |
| AAACGATCCACCACCTCCAG+TGG | - | chr2_1:65300365-65300384 | None:intergenic | 55.0% | |
| ! | TTGTGGAGGTGGTGGTTCTG+AGG | - | chr2_1:65300502-65300521 | None:intergenic | 55.0% |
| CTTGTTGGCCGTTGTTGTGG+AGG | - | chr2_1:65300516-65300535 | None:intergenic | 55.0% | |
| ! | CCACTTGTTGGCCGTTGTTG+TGG | - | chr2_1:65300519-65300538 | None:intergenic | 55.0% |
| CCACAACAACGGCCAACAAG+TGG | + | chr2_1:65300516-65300535 | Msa0218180:CDS | 55.0% | |
| GAATCGCGGAGATCTTCCTC+CGG | - | chr2_1:65301036-65301055 | None:intergenic | 55.0% | |
| GACGTTTCAGTTTCCGGCGT+TGG | + | chr2_1:65301056-65301075 | Msa0218180:CDS | 55.0% | |
| ! | GTTTCAGTTTCCGGCGTTGG+TGG | + | chr2_1:65301059-65301078 | Msa0218180:CDS | 55.0% |
| TAATGGCAACCCACCAACGC+CGG | - | chr2_1:65301072-65301091 | None:intergenic | 55.0% | |
| AAACGATCCACCACCTCCAG+TGG | - | chr2_1:65300365-65300384 | None:intergenic | 55.0% | |
| ! | TTGTGGAGGTGGTGGTTCTG+AGG | - | chr2_1:65300502-65300521 | None:intergenic | 55.0% |
| CTTGTTGGCCGTTGTTGTGG+AGG | - | chr2_1:65300516-65300535 | None:intergenic | 55.0% | |
| ! | CCACTTGTTGGCCGTTGTTG+TGG | - | chr2_1:65300519-65300538 | None:intergenic | 55.0% |
| CCACAACAACGGCCAACAAG+TGG | + | chr2_1:65300516-65300535 | Msa0218180:CDS | 55.0% | |
| GAATCGCGGAGATCTTCCTC+CGG | - | chr2_1:65301036-65301055 | None:intergenic | 55.0% | |
| GACGTTTCAGTTTCCGGCGT+TGG | + | chr2_1:65301056-65301075 | Msa0218180:CDS | 55.0% | |
| ! | GTTTCAGTTTCCGGCGTTGG+TGG | + | chr2_1:65301059-65301078 | Msa0218180:CDS | 55.0% |
| TAATGGCAACCCACCAACGC+CGG | - | chr2_1:65301072-65301091 | None:intergenic | 55.0% | |
| GCAGTTGTCTCCTGTCACCG+AGG | + | chr2_1:65300306-65300325 | Msa0218180:CDS | 60.0% | |
| GTAGCAGTTGCCTCGGTGAC+AGG | - | chr2_1:65300319-65300338 | None:intergenic | 60.0% | |
| TCGAGCTGCTCAAGTGCCAC+TGG | + | chr2_1:65300346-65300365 | Msa0218180:CDS | 60.0% | |
| ! | AGCTGCTCAAGTGCCACTGG+AGG | + | chr2_1:65300349-65300368 | Msa0218180:CDS | 60.0% |
| ! | TGCTCAAGTGCCACTGGAGG+TGG | + | chr2_1:65300352-65300371 | Msa0218180:CDS | 60.0% |
| ! | TCAAGTGCCACTGGAGGTGG+TGG | + | chr2_1:65300355-65300374 | Msa0218180:CDS | 60.0% |
| !! | GGTGGTGGTTCTGAGGACGA+CGG | - | chr2_1:65300495-65300514 | None:intergenic | 60.0% |
| GTTGGCCGTTGTTGTGGAGG+TGG | - | chr2_1:65300513-65300532 | None:intergenic | 60.0% | |
| ! | GTGGTGATTTGTCGCGGTCG+CGG | - | chr2_1:65300703-65300722 | None:intergenic | 60.0% |
| ! | CCGGTGGTGGTGATTTGTCG+CGG | - | chr2_1:65300709-65300728 | None:intergenic | 60.0% |
| CCGCGACAAATCACCACCAC+CGG | + | chr2_1:65300706-65300725 | Msa0218180:CDS | 60.0% | |
| GGACCTTAACCTTCCGGCAC+CGG | + | chr2_1:65301014-65301033 | Msa0218180:CDS | 60.0% | |
| GCAGTTGTCTCCTGTCACCG+AGG | + | chr2_1:65300306-65300325 | Msa0218180:CDS | 60.0% | |
| GTAGCAGTTGCCTCGGTGAC+AGG | - | chr2_1:65300319-65300338 | None:intergenic | 60.0% | |
| TCGAGCTGCTCAAGTGCCAC+TGG | + | chr2_1:65300346-65300365 | Msa0218180:CDS | 60.0% | |
| ! | AGCTGCTCAAGTGCCACTGG+AGG | + | chr2_1:65300349-65300368 | Msa0218180:CDS | 60.0% |
| ! | TGCTCAAGTGCCACTGGAGG+TGG | + | chr2_1:65300352-65300371 | Msa0218180:CDS | 60.0% |
| ! | TCAAGTGCCACTGGAGGTGG+TGG | + | chr2_1:65300355-65300374 | Msa0218180:CDS | 60.0% |
| !! | GGTGGTGGTTCTGAGGACGA+CGG | - | chr2_1:65300495-65300514 | None:intergenic | 60.0% |
| GTTGGCCGTTGTTGTGGAGG+TGG | - | chr2_1:65300513-65300532 | None:intergenic | 60.0% | |
| ! | GTGGTGATTTGTCGCGGTCG+CGG | - | chr2_1:65300703-65300722 | None:intergenic | 60.0% |
| ! | CCGGTGGTGGTGATTTGTCG+CGG | - | chr2_1:65300709-65300728 | None:intergenic | 60.0% |
| CCGCGACAAATCACCACCAC+CGG | + | chr2_1:65300706-65300725 | Msa0218180:CDS | 60.0% | |
| GGACCTTAACCTTCCGGCAC+CGG | + | chr2_1:65301014-65301033 | Msa0218180:CDS | 60.0% | |
| GGCCGTTGTTGTGGAGGTGG+TGG | - | chr2_1:65300510-65300529 | None:intergenic | 65.0% | |
| ! | GTGATTTGTCGCGGTCGCGG+AGG | - | chr2_1:65300700-65300719 | None:intergenic | 65.0% |
| ! | CCTCCGGTGCCGGAAGGTTA+AGG | - | chr2_1:65301020-65301039 | None:intergenic | 65.0% |
| ! | CCTTAACCTTCCGGCACCGG+AGG | + | chr2_1:65301017-65301036 | Msa0218180:CDS | 65.0% |
| ! | GATCTTCCTCCGGTGCCGGA+AGG | - | chr2_1:65301026-65301045 | None:intergenic | 65.0% |
| CGGAGATCTTCCTCCGGTGC+CGG | - | chr2_1:65301030-65301049 | None:intergenic | 65.0% | |
| GGCCGTTGTTGTGGAGGTGG+TGG | - | chr2_1:65300510-65300529 | None:intergenic | 65.0% | |
| ! | GTGATTTGTCGCGGTCGCGG+AGG | - | chr2_1:65300700-65300719 | None:intergenic | 65.0% |
| ! | CCTCCGGTGCCGGAAGGTTA+AGG | - | chr2_1:65301020-65301039 | None:intergenic | 65.0% |
| ! | CCTTAACCTTCCGGCACCGG+AGG | + | chr2_1:65301017-65301036 | Msa0218180:CDS | 65.0% |
| ! | GATCTTCCTCCGGTGCCGGA+AGG | - | chr2_1:65301026-65301045 | None:intergenic | 65.0% |
| CGGAGATCTTCCTCCGGTGC+CGG | - | chr2_1:65301030-65301049 | None:intergenic | 65.0% | |
| TTGTCGCGGTCGCGGAGGTG+AGG | - | chr2_1:65300695-65300714 | None:intergenic | 70.0% | |
| TTGTCGCGGTCGCGGAGGTG+AGG | - | chr2_1:65300695-65300714 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 65300220 | 65301095 | 65300220 | ID=Msa0218180;Name=Msa0218180 |
| chr2_1 | mRNA | 65300220 | 65301095 | 65300220 | ID=Msa0218180-mRNA-1;Parent=Msa0218180;Name=Msa0218180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|291 |
| chr2_1 | exon | 65300220 | 65301095 | 65300220 | ID=Msa0218180-mRNA-1:exon:18152;Parent=Msa0218180-mRNA-1 |
| chr2_1 | CDS | 65300220 | 65301095 | 65300220 | ID=Msa0218180-mRNA-1:cds;Parent=Msa0218180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
