Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297080 | XP_013464844.2 | 93.537 | 294 | 17 | 2 | 1 | 293 | 5 | 297 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297080 | sp|Q681X4|ZAT5_ARATH | 40.952 | 315 | 129 | 11 | 6 | 293 | 2 | 286 | 1.62e-50 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297080 | A0A396JB23 | 93.537 | 294 | 17 | 2 | 1 | 293 | 5 | 297 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0297080 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218180 | Msa0297080 | 0.806802 | 6.890354e-50 | -8.615850e-47 |
| Msa0297080 | Msa0387380 | 0.806559 | 7.754842e-50 | -8.615850e-47 |
| Msa0297080 | Msa1372830 | 0.882058 | 1.432244e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297080 | MtrunA17_Chr2g0320311 | 93.537 | 294 | 17 | 2 | 1 | 293 | 5 | 297 | 0.0 | 541 |
| Msa0297080 | MtrunA17_Chr4g0027991 | 43.202 | 331 | 110 | 12 | 3 | 293 | 1 | 293 | 2.32e-57 | 186 |
| Msa0297080 | MtrunA17_Chr1g0197281 | 37.419 | 310 | 140 | 9 | 15 | 285 | 18 | 312 | 1.10e-46 | 160 |
| Msa0297080 | MtrunA17_Chr1g0180311 | 40.000 | 300 | 134 | 10 | 19 | 293 | 19 | 297 | 1.48e-46 | 158 |
| Msa0297080 | MtrunA17_Chr1g0182181 | 32.870 | 216 | 77 | 6 | 64 | 279 | 4 | 151 | 7.51e-26 | 100 |
| Msa0297080 | MtrunA17_Chr1g0182161 | 39.623 | 159 | 51 | 3 | 125 | 279 | 39 | 156 | 3.03e-24 | 96.3 |
| Msa0297080 | MtrunA17_Chr7g0263131 | 39.024 | 164 | 57 | 6 | 115 | 277 | 26 | 147 | 5.30e-23 | 92.8 |
| Msa0297080 | MtrunA17_Chr7g0222831 | 37.989 | 179 | 46 | 6 | 71 | 248 | 12 | 126 | 2.97e-22 | 91.7 |
| Msa0297080 | MtrunA17_Chr7g0263121 | 32.877 | 219 | 80 | 8 | 62 | 279 | 6 | 158 | 4.65e-22 | 90.5 |
| Msa0297080 | MtrunA17_Chr1g0212561 | 39.286 | 140 | 50 | 3 | 108 | 245 | 26 | 132 | 3.91e-20 | 86.3 |
| Msa0297080 | MtrunA17_Chr1g0188911 | 34.911 | 169 | 77 | 5 | 122 | 273 | 41 | 193 | 1.20e-17 | 79.3 |
| Msa0297080 | MtrunA17_Chr4g0012691 | 37.500 | 152 | 67 | 4 | 125 | 274 | 220 | 345 | 1.54e-17 | 82.0 |
| Msa0297080 | MtrunA17_Chr4g0012791 | 29.614 | 233 | 129 | 6 | 67 | 274 | 158 | 380 | 4.54e-15 | 75.1 |
| Msa0297080 | MtrunA17_Chr4g0061301 | 35.359 | 181 | 59 | 7 | 125 | 281 | 348 | 494 | 6.39e-15 | 74.7 |
| Msa0297080 | MtrunA17_Chr1g0188901 | 35.366 | 164 | 79 | 6 | 113 | 273 | 46 | 185 | 2.22e-14 | 70.1 |
| Msa0297080 | MtrunA17_Chr1g0152661 | 30.435 | 207 | 92 | 4 | 67 | 273 | 39 | 193 | 1.90e-13 | 68.6 |
| Msa0297080 | MtrunA17_Chr1g0207451 | 34.667 | 150 | 62 | 3 | 125 | 274 | 83 | 196 | 1.58e-12 | 66.2 |
| Msa0297080 | MtrunA17_Chr3g0134711 | 28.054 | 221 | 92 | 6 | 60 | 273 | 41 | 201 | 9.50e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297080 | AT2G28200.1 | 40.952 | 315 | 129 | 11 | 6 | 293 | 2 | 286 | 1.64e-51 | 171 |
| Msa0297080 | AT5G03510.1 | 35.762 | 302 | 141 | 9 | 19 | 293 | 17 | 292 | 1.45e-45 | 155 |
| Msa0297080 | AT5G04390.1 | 31.854 | 383 | 137 | 13 | 10 | 293 | 5 | 362 | 1.74e-34 | 128 |
| Msa0297080 | AT3G10470.1 | 34.559 | 272 | 126 | 6 | 59 | 285 | 96 | 360 | 2.00e-27 | 110 |
| Msa0297080 | AT2G37430.1 | 33.484 | 221 | 77 | 7 | 61 | 278 | 7 | 160 | 3.70e-22 | 91.3 |
| Msa0297080 | AT3G60580.1 | 31.179 | 263 | 124 | 11 | 23 | 284 | 82 | 288 | 1.08e-18 | 84.3 |
| Msa0297080 | AT3G53600.1 | 37.419 | 155 | 50 | 4 | 125 | 278 | 49 | 157 | 1.47e-18 | 81.6 |
| Msa0297080 | AT2G45120.1 | 31.280 | 211 | 90 | 7 | 68 | 277 | 148 | 304 | 3.12e-17 | 80.9 |
| Msa0297080 | AT1G49900.1 | 35.780 | 109 | 34 | 3 | 123 | 231 | 748 | 820 | 2.23e-12 | 67.8 |
| Msa0297080 | AT3G19580.1 | 33.133 | 166 | 65 | 8 | 67 | 231 | 67 | 187 | 2.91e-12 | 65.9 |
| Msa0297080 | AT3G19580.2 | 33.133 | 166 | 65 | 8 | 67 | 231 | 67 | 187 | 2.91e-12 | 65.9 |
| Msa0297080 | AT5G67450.1 | 33.750 | 160 | 80 | 3 | 125 | 275 | 97 | 239 | 7.86e-12 | 64.3 |
Find 86 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACACCCATGAACCTTATT+AGG | 0.190387 | 2_3:+50719988 | None:intergenic |
| GGCTAATTGTTTGATTCTTC+TGG | 0.203387 | 2_3:-50720388 | Msa0297080:CDS |
| TATCAACTTCAAACCTAATA+AGG | 0.231751 | 2_3:-50720001 | Msa0297080:CDS |
| CGATTCGACGTTTCAGTTTC+CGG | 0.243464 | 2_3:-50719764 | Msa0297080:CDS |
| CTCGAGTTTCTCTTGAATTA+AGG | 0.276923 | 2_3:-50720035 | Msa0297080:CDS |
| GTGAATTTGAACATGAAAAT+AGG | 0.278615 | 2_3:-50720092 | Msa0297080:CDS |
| GTCTAGGAATGTTCTTGAAT+TGG | 0.330690 | 2_3:-50719821 | Msa0297080:CDS |
| GTTGGTGGGTTGCCATTATT+AGG | 0.332911 | 2_3:-50719740 | None:intergenic |
| ATGGACATGGAAGGAATTAT+AGG | 0.340892 | 2_3:-50720600 | Msa0297080:CDS |
| AACAACGTTGGTGTTGTTAC+AGG | 0.344318 | 2_3:-50719865 | Msa0297080:CDS |
| AGCAAGAGGACTAATATTCT+TGG | 0.352029 | 2_3:+50720059 | None:intergenic |
| TGCTCAAGTGCCACTGGAGG+TGG | 0.369286 | 2_3:-50720468 | Msa0297080:CDS |
| TTCCATTCATTTCAAGCGTT+GGG | 0.375944 | 2_3:-50720201 | Msa0297080:CDS |
| TTCAAACCTAATAAGGTTCA+TGG | 0.378517 | 2_3:-50719994 | Msa0297080:CDS |
| ATCCAACGTTGGCCTAATAA+TGG | 0.380442 | 2_3:+50719728 | None:intergenic |
| TGAATTGGACCTTAACCTTC+CGG | 0.389601 | 2_3:-50719806 | Msa0297080:CDS |
| CCTCCGGTGCCGGAAGGTTA+AGG | 0.413234 | 2_3:+50719797 | None:intergenic |
| TGTTGTAACCATCCACTTGT+TGG | 0.424922 | 2_3:+50720292 | None:intergenic |
| GAAAGCGAACGAAACGGTTA+AGG | 0.426921 | 2_3:-50720536 | Msa0297080:CDS |
| AAGATGTTCATGTTAGGTCT+AGG | 0.445757 | 2_3:-50719837 | Msa0297080:CDS |
| GACGTTTCAGTTTCCGGCGT+TGG | 0.448103 | 2_3:-50719758 | Msa0297080:CDS |
| TTTCCATTCATTTCAAGCGT+TGG | 0.453765 | 2_3:-50720202 | Msa0297080:CDS |
| CTTCTGGCTCAAGGAAGAAC+GGG | 0.457858 | 2_3:-50720372 | Msa0297080:CDS |
| ATGTTCAAATTCACCGGTGG+TGG | 0.457962 | 2_3:+50720101 | None:intergenic |
| GCAAGAGGACTAATATTCTT+GGG | 0.460139 | 2_3:+50720060 | None:intergenic |
| CACCCAACGCTTGAAATGAA+TGG | 0.472542 | 2_3:+50720199 | None:intergenic |
| GAGGAACATGTTAATGATGT+TGG | 0.472717 | 2_3:-50720573 | Msa0297080:CDS |
| CCACTTGTTGGCCGTTGTTG+TGG | 0.476786 | 2_3:+50720304 | None:intergenic |
| CAACAAAATAACAATTGAAA+AGG | 0.479506 | 2_3:-50720274 | Msa0297080:CDS |
| GTTTCAGTTTCCGGCGTTGG+TGG | 0.482549 | 2_3:-50719755 | Msa0297080:CDS |
| GTAGCAGTTGCCACGGTGAC+AGG | 0.485951 | 2_3:+50720504 | None:intergenic |
| CGGAGATCTTCCTCCGGTGC+CGG | 0.488269 | 2_3:+50719787 | None:intergenic |
| TTCACATCAGGTCAAGCATT+GGG | 0.490157 | 2_3:-50719949 | Msa0297080:CDS |
| AGGAACATGTTAATGATGTT+GGG | 0.501178 | 2_3:-50720572 | Msa0297080:CDS |
| TTTCAGTTTCCGGCGTTGGT+GGG | 0.503347 | 2_3:-50719754 | Msa0297080:CDS |
| GGACCTTAACCTTCCGGCAC+CGG | 0.507435 | 2_3:-50719800 | Msa0297080:CDS |
| TCGAGCTGCTCAAGTGCCAC+TGG | 0.507708 | 2_3:-50720474 | Msa0297080:CDS |
| TCAAGTGCCACTGGAGGTGG+TGG | 0.508718 | 2_3:-50720465 | Msa0297080:CDS |
| GGCCGTTGTTGTGGAGGTGG+TGG | 0.514785 | 2_3:+50720313 | None:intergenic |
| CATTCATTTCAAGCGTTGGG+TGG | 0.518965 | 2_3:-50720198 | Msa0297080:CDS |
| TGTGGAGCTGAATTCACATC+AGG | 0.521653 | 2_3:-50719961 | Msa0297080:CDS |
| GTTGGCCGTTGTTGTGGAGG+TGG | 0.522596 | 2_3:+50720310 | None:intergenic |
| TTCTTGCTCAGTGTCATCAA+AGG | 0.527374 | 2_3:+50720425 | None:intergenic |
| TGTTTGATTCTTCTGGCTCA+AGG | 0.533403 | 2_3:-50720381 | Msa0297080:CDS |
| TTGTCGCGGTCGCGGAGGTG+AGG | 0.537270 | 2_3:+50720128 | None:intergenic |
| ATTCACATCAGGTCAAGCAT+TGG | 0.538410 | 2_3:-50719950 | Msa0297080:CDS |
| CTTGTTGGCCGTTGTTGTGG+AGG | 0.539786 | 2_3:+50720307 | None:intergenic |
| TCAAAGGAAAGCGAACGAAA+CGG | 0.541935 | 2_3:-50720542 | Msa0297080:CDS |
| CTCAGTGTCATCAAAGGTGG+TGG | 0.547013 | 2_3:+50720431 | None:intergenic |
| TCTTCTGGCTCAAGGAAGAA+CGG | 0.548703 | 2_3:-50720373 | Msa0297080:CDS |
| GTGGTGATTTGTCGCGGTCG+CGG | 0.549407 | 2_3:+50720120 | None:intergenic |
| GCAAGAAGAGGAAGCAGACA+TGG | 0.561196 | 2_3:-50720409 | Msa0297080:CDS |
| AACATCATTAACATGTTCCT+CGG | 0.565470 | 2_3:+50720575 | None:intergenic |
| TCAAACCTAATAAGGTTCAT+GGG | 0.566961 | 2_3:-50719993 | Msa0297080:CDS |
| GTTCATGGGTGTTCAATATG+TGG | 0.567866 | 2_3:-50719979 | Msa0297080:CDS |
| TTGCTCAGTGTCATCAAAGG+TGG | 0.571081 | 2_3:+50720428 | None:intergenic |
| GATGTTGGGCACCTCATCAA+AGG | 0.576365 | 2_3:-50720558 | Msa0297080:CDS |
| CCACAACAACGGCCAACAAG+TGG | 0.585250 | 2_3:-50720304 | Msa0297080:CDS |
| AGAGAAACTCGAGGAGCAAG+AGG | 0.585638 | 2_3:+50720045 | None:intergenic |
| CCGCGACAAATCACCACCAC+CGG | 0.586036 | 2_3:-50720114 | Msa0297080:CDS |
| GTTTCTCTTGAATTAAGGTG+TGG | 0.591781 | 2_3:-50720030 | Msa0297080:CDS |
| TGATGACACTGAGCAAGAAG+AGG | 0.591813 | 2_3:-50720421 | Msa0297080:CDS |
| AGGAAGAACGGGAAGAGAAG+AGG | 0.593891 | 2_3:-50720361 | Msa0297080:CDS |
| CCTTAACCTTCCGGCACCGG+AGG | 0.594600 | 2_3:-50719797 | Msa0297080:CDS |
| GATCTTCCTCCGGTGCCGGA+AGG | 0.594929 | 2_3:+50719791 | None:intergenic |
| TTGTCTAAAATGGACATGGA+AGG | 0.601540 | 2_3:-50720609 | None:intergenic |
| TTGTGGAGGTGGTGGTTCTG+AGG | 0.603082 | 2_3:+50720321 | None:intergenic |
| AAGCATTGGGTGGTCACATG+AGG | 0.609394 | 2_3:-50719936 | Msa0297080:CDS |
| TCGTTCGCTTTCCTTTGATG+AGG | 0.611523 | 2_3:+50720547 | None:intergenic |
| TAATGGCAACCCACCAACGC+CGG | 0.618418 | 2_3:+50719745 | None:intergenic |
| GAATCGCGGAGATCTTCCTC+CGG | 0.624286 | 2_3:+50719781 | None:intergenic |
| GTGATTTGTCGCGGTCGCGG+AGG | 0.628904 | 2_3:+50720123 | None:intergenic |
| AACAACGGCCAACAAGTGGA+TGG | 0.629201 | 2_3:-50720300 | Msa0297080:CDS |
| AGCTGCTCAAGTGCCACTGG+AGG | 0.629481 | 2_3:-50720471 | Msa0297080:CDS |
| TTCATGTTCAAATTCACCGG+TGG | 0.633752 | 2_3:+50720098 | None:intergenic |
| GATGTTGTCTAAAATGGACA+TGG | 0.636077 | 2_3:-50720613 | None:intergenic |
| AAACGATCCACCACCTCCAG+TGG | 0.642817 | 2_3:+50720458 | None:intergenic |
| AACCACCACCTCCACAACAA+CGG | 0.646757 | 2_3:-50720315 | Msa0297080:CDS |
| GAAACTGAAACGTCGAATCG+CGG | 0.658540 | 2_3:+50719767 | None:intergenic |
| CCGGTGGTGGTGATTTGTCG+CGG | 0.660219 | 2_3:+50720114 | None:intergenic |
| GCAGTTGTCTCCTGTCACCG+TGG | 0.669727 | 2_3:-50720514 | Msa0297080:CDS |
| TGTCATCGTAGCAGTTGCCA+CGG | 0.678106 | 2_3:+50720497 | None:intergenic |
| ACATCAGGTCAAGCATTGGG+TGG | 0.680038 | 2_3:-50719946 | Msa0297080:CDS |
| GGTGGTGGTTCTGAGGACGA+CGG | 0.683349 | 2_3:+50720328 | None:intergenic |
| CTTAATTCAAGAGAAACTCG+AGG | 0.731434 | 2_3:+50720036 | None:intergenic |
| GGAAGGAATTATAGGCACCG+AGG | 0.764139 | 2_3:-50720592 | Msa0297080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACAAAATAACAATTGAAA+AGG | - | chr2_3:50720067-50720086 | Msa0297080:CDS | 20.0% |
| !! | CAACAAAATAACAATTGAAA+AGG | - | chr2_3:50720067-50720086 | Msa0297080:CDS | 20.0% |
| ! | ATTGAAAAGGAGACAAAAAA+CGG | - | chr2_3:50720080-50720099 | Msa0297080:CDS | 25.0% |
| ! | CTTGAAATGAATGGAAAAAA+CGG | + | chr2_3:50720136-50720155 | None:intergenic | 25.0% |
| !! | TGTTTTTCTTCTTTCATCTT+TGG | + | chr2_3:50720191-50720210 | None:intergenic | 25.0% |
| !! | ATTTTCATGTTCAAATTCAC+CGG | + | chr2_3:50720249-50720268 | None:intergenic | 25.0% |
| ! | GTGAATTTGAACATGAAAAT+AGG | - | chr2_3:50720249-50720268 | Msa0297080:CDS | 25.0% |
| ! | TATCAACTTCAAACCTAATA+AGG | - | chr2_3:50720340-50720359 | Msa0297080:CDS | 25.0% |
| ! | ATTGAAAAGGAGACAAAAAA+CGG | - | chr2_3:50720080-50720099 | Msa0297080:CDS | 25.0% |
| ! | CTTGAAATGAATGGAAAAAA+CGG | + | chr2_3:50720136-50720155 | None:intergenic | 25.0% |
| !! | TGTTTTTCTTCTTTCATCTT+TGG | + | chr2_3:50720191-50720210 | None:intergenic | 25.0% |
| !! | ATTTTCATGTTCAAATTCAC+CGG | + | chr2_3:50720249-50720268 | None:intergenic | 25.0% |
| ! | GTGAATTTGAACATGAAAAT+AGG | - | chr2_3:50720249-50720268 | Msa0297080:CDS | 25.0% |
| ! | TATCAACTTCAAACCTAATA+AGG | - | chr2_3:50720340-50720359 | Msa0297080:CDS | 25.0% |
| AACATCATTAACATGTTCCT+CGG | + | chr2_3:50719769-50719788 | None:intergenic | 30.0% | |
| AGGAACATGTTAATGATGTT+GGG | - | chr2_3:50719769-50719788 | Msa0297080:CDS | 30.0% | |
| TTCAAACCTAATAAGGTTCA+TGG | - | chr2_3:50720347-50720366 | Msa0297080:CDS | 30.0% | |
| TCAAACCTAATAAGGTTCAT+GGG | - | chr2_3:50720348-50720367 | Msa0297080:CDS | 30.0% | |
| AACAACAAAAACAACAACGT+TGG | - | chr2_3:50720464-50720483 | Msa0297080:CDS | 30.0% | |
| !!! | GTTTTGAAGATGTTCATGTT+AGG | - | chr2_3:50720498-50720517 | Msa0297080:CDS | 30.0% |
| AACATCATTAACATGTTCCT+CGG | + | chr2_3:50719769-50719788 | None:intergenic | 30.0% | |
| AGGAACATGTTAATGATGTT+GGG | - | chr2_3:50719769-50719788 | Msa0297080:CDS | 30.0% | |
| TTCAAACCTAATAAGGTTCA+TGG | - | chr2_3:50720347-50720366 | Msa0297080:CDS | 30.0% | |
| TCAAACCTAATAAGGTTCAT+GGG | - | chr2_3:50720348-50720367 | Msa0297080:CDS | 30.0% | |
| AACAACAAAAACAACAACGT+TGG | - | chr2_3:50720464-50720483 | Msa0297080:CDS | 30.0% | |
| !!! | GTTTTGAAGATGTTCATGTT+AGG | - | chr2_3:50720498-50720517 | Msa0297080:CDS | 30.0% |
| ATGGACATGGAAGGAATTAT+AGG | - | chr2_3:50719741-50719760 | Msa0297080:CDS | 35.0% | |
| GAGGAACATGTTAATGATGT+TGG | - | chr2_3:50719768-50719787 | Msa0297080:CDS | 35.0% | |
| GGCTAATTGTTTGATTCTTC+TGG | - | chr2_3:50719953-50719972 | Msa0297080:CDS | 35.0% | |
| TTTCCATTCATTTCAAGCGT+TGG | - | chr2_3:50720139-50720158 | Msa0297080:CDS | 35.0% | |
| TTCCATTCATTTCAAGCGTT+GGG | - | chr2_3:50720140-50720159 | Msa0297080:CDS | 35.0% | |
| GCAAGAGGACTAATATTCTT+GGG | + | chr2_3:50720284-50720303 | None:intergenic | 35.0% | |
| AGCAAGAGGACTAATATTCT+TGG | + | chr2_3:50720285-50720304 | None:intergenic | 35.0% | |
| CTTAATTCAAGAGAAACTCG+AGG | + | chr2_3:50720308-50720327 | None:intergenic | 35.0% | |
| CTCGAGTTTCTCTTGAATTA+AGG | - | chr2_3:50720306-50720325 | Msa0297080:CDS | 35.0% | |
| GTTTCTCTTGAATTAAGGTG+TGG | - | chr2_3:50720311-50720330 | Msa0297080:CDS | 35.0% | |
| AAGATGTTCATGTTAGGTCT+AGG | - | chr2_3:50720504-50720523 | Msa0297080:CDS | 35.0% | |
| GTCTAGGAATGTTCTTGAAT+TGG | - | chr2_3:50720520-50720539 | Msa0297080:CDS | 35.0% | |
| ATGGACATGGAAGGAATTAT+AGG | - | chr2_3:50719741-50719760 | Msa0297080:CDS | 35.0% | |
| GAGGAACATGTTAATGATGT+TGG | - | chr2_3:50719768-50719787 | Msa0297080:CDS | 35.0% | |
| GGCTAATTGTTTGATTCTTC+TGG | - | chr2_3:50719953-50719972 | Msa0297080:CDS | 35.0% | |
| TTTCCATTCATTTCAAGCGT+TGG | - | chr2_3:50720139-50720158 | Msa0297080:CDS | 35.0% | |
| TTCCATTCATTTCAAGCGTT+GGG | - | chr2_3:50720140-50720159 | Msa0297080:CDS | 35.0% | |
| GCAAGAGGACTAATATTCTT+GGG | + | chr2_3:50720284-50720303 | None:intergenic | 35.0% | |
| AGCAAGAGGACTAATATTCT+TGG | + | chr2_3:50720285-50720304 | None:intergenic | 35.0% | |
| CTTAATTCAAGAGAAACTCG+AGG | + | chr2_3:50720308-50720327 | None:intergenic | 35.0% | |
| CTCGAGTTTCTCTTGAATTA+AGG | - | chr2_3:50720306-50720325 | Msa0297080:CDS | 35.0% | |
| GTTTCTCTTGAATTAAGGTG+TGG | - | chr2_3:50720311-50720330 | Msa0297080:CDS | 35.0% | |
| AAGATGTTCATGTTAGGTCT+AGG | - | chr2_3:50720504-50720523 | Msa0297080:CDS | 35.0% | |
| GTCTAGGAATGTTCTTGAAT+TGG | - | chr2_3:50720520-50720539 | Msa0297080:CDS | 35.0% | |
| TCAAAGGAAAGCGAACGAAA+CGG | - | chr2_3:50719799-50719818 | Msa0297080:CDS | 40.0% | |
| TTCTTGCTCAGTGTCATCAA+AGG | + | chr2_3:50719919-50719938 | None:intergenic | 40.0% | |
| !! | TGTTTGATTCTTCTGGCTCA+AGG | - | chr2_3:50719960-50719979 | Msa0297080:CDS | 40.0% |
| TGTTGTAACCATCCACTTGT+TGG | + | chr2_3:50720052-50720071 | None:intergenic | 40.0% | |
| TTCATGTTCAAATTCACCGG+TGG | + | chr2_3:50720246-50720265 | None:intergenic | 40.0% | |
| GAACACCCATGAACCTTATT+AGG | + | chr2_3:50720356-50720375 | None:intergenic | 40.0% | |
| GTTCATGGGTGTTCAATATG+TGG | - | chr2_3:50720362-50720381 | Msa0297080:CDS | 40.0% | |
| ATTCACATCAGGTCAAGCAT+TGG | - | chr2_3:50720391-50720410 | Msa0297080:CDS | 40.0% | |
| TTCACATCAGGTCAAGCATT+GGG | - | chr2_3:50720392-50720411 | Msa0297080:CDS | 40.0% | |
| !! | AACAACGTTGGTGTTGTTAC+AGG | - | chr2_3:50720476-50720495 | Msa0297080:CDS | 40.0% |
| TGAATTGGACCTTAACCTTC+CGG | - | chr2_3:50720535-50720554 | Msa0297080:CDS | 40.0% | |
| TCAAAGGAAAGCGAACGAAA+CGG | - | chr2_3:50719799-50719818 | Msa0297080:CDS | 40.0% | |
| TTCTTGCTCAGTGTCATCAA+AGG | + | chr2_3:50719919-50719938 | None:intergenic | 40.0% | |
| !! | TGTTTGATTCTTCTGGCTCA+AGG | - | chr2_3:50719960-50719979 | Msa0297080:CDS | 40.0% |
| TGTTGTAACCATCCACTTGT+TGG | + | chr2_3:50720052-50720071 | None:intergenic | 40.0% | |
| TTCATGTTCAAATTCACCGG+TGG | + | chr2_3:50720246-50720265 | None:intergenic | 40.0% | |
| GAACACCCATGAACCTTATT+AGG | + | chr2_3:50720356-50720375 | None:intergenic | 40.0% | |
| GTTCATGGGTGTTCAATATG+TGG | - | chr2_3:50720362-50720381 | Msa0297080:CDS | 40.0% | |
| ATTCACATCAGGTCAAGCAT+TGG | - | chr2_3:50720391-50720410 | Msa0297080:CDS | 40.0% | |
| TTCACATCAGGTCAAGCATT+GGG | - | chr2_3:50720392-50720411 | Msa0297080:CDS | 40.0% | |
| !! | AACAACGTTGGTGTTGTTAC+AGG | - | chr2_3:50720476-50720495 | Msa0297080:CDS | 40.0% |
| TGAATTGGACCTTAACCTTC+CGG | - | chr2_3:50720535-50720554 | Msa0297080:CDS | 40.0% | |
| TCGTTCGCTTTCCTTTGATG+AGG | + | chr2_3:50719797-50719816 | None:intergenic | 45.0% | |
| GAAAGCGAACGAAACGGTTA+AGG | - | chr2_3:50719805-50719824 | Msa0297080:CDS | 45.0% | |
| TTGCTCAGTGTCATCAAAGG+TGG | + | chr2_3:50719916-50719935 | None:intergenic | 45.0% | |
| TGATGACACTGAGCAAGAAG+AGG | - | chr2_3:50719920-50719939 | Msa0297080:CDS | 45.0% | |
| !! | TCTTCTGGCTCAAGGAAGAA+CGG | - | chr2_3:50719968-50719987 | Msa0297080:CDS | 45.0% |
| CACCCAACGCTTGAAATGAA+TGG | + | chr2_3:50720145-50720164 | None:intergenic | 45.0% | |
| !! | CATTCATTTCAAGCGTTGGG+TGG | - | chr2_3:50720143-50720162 | Msa0297080:CDS | 45.0% |
| ATGTTCAAATTCACCGGTGG+TGG | + | chr2_3:50720243-50720262 | None:intergenic | 45.0% | |
| TGTGGAGCTGAATTCACATC+AGG | - | chr2_3:50720380-50720399 | Msa0297080:CDS | 45.0% | |
| GAAACTGAAACGTCGAATCG+CGG | + | chr2_3:50720577-50720596 | None:intergenic | 45.0% | |
| CGATTCGACGTTTCAGTTTC+CGG | - | chr2_3:50720577-50720596 | Msa0297080:CDS | 45.0% | |
| TCGTTCGCTTTCCTTTGATG+AGG | + | chr2_3:50719797-50719816 | None:intergenic | 45.0% | |
| GAAAGCGAACGAAACGGTTA+AGG | - | chr2_3:50719805-50719824 | Msa0297080:CDS | 45.0% | |
| TTGCTCAGTGTCATCAAAGG+TGG | + | chr2_3:50719916-50719935 | None:intergenic | 45.0% | |
| TGATGACACTGAGCAAGAAG+AGG | - | chr2_3:50719920-50719939 | Msa0297080:CDS | 45.0% | |
| !! | TCTTCTGGCTCAAGGAAGAA+CGG | - | chr2_3:50719968-50719987 | Msa0297080:CDS | 45.0% |
| CACCCAACGCTTGAAATGAA+TGG | + | chr2_3:50720145-50720164 | None:intergenic | 45.0% | |
| !! | CATTCATTTCAAGCGTTGGG+TGG | - | chr2_3:50720143-50720162 | Msa0297080:CDS | 45.0% |
| ATGTTCAAATTCACCGGTGG+TGG | + | chr2_3:50720243-50720262 | None:intergenic | 45.0% | |
| TGTGGAGCTGAATTCACATC+AGG | - | chr2_3:50720380-50720399 | Msa0297080:CDS | 45.0% | |
| GAAACTGAAACGTCGAATCG+CGG | + | chr2_3:50720577-50720596 | None:intergenic | 45.0% | |
| CGATTCGACGTTTCAGTTTC+CGG | - | chr2_3:50720577-50720596 | Msa0297080:CDS | 45.0% | |
| ! | GGAAGGAATTATAGGCACCG+AGG | - | chr2_3:50719749-50719768 | Msa0297080:CDS | 50.0% |
| GATGTTGGGCACCTCATCAA+AGG | - | chr2_3:50719783-50719802 | Msa0297080:CDS | 50.0% | |
| TGTCATCGTAGCAGTTGCCA+CGG | + | chr2_3:50719847-50719866 | None:intergenic | 50.0% | |
| CTCAGTGTCATCAAAGGTGG+TGG | + | chr2_3:50719913-50719932 | None:intergenic | 50.0% | |
| GCAAGAAGAGGAAGCAGACA+TGG | - | chr2_3:50719932-50719951 | Msa0297080:CDS | 50.0% | |
| !! | CTTCTGGCTCAAGGAAGAAC+GGG | - | chr2_3:50719969-50719988 | Msa0297080:CDS | 50.0% |
| AGGAAGAACGGGAAGAGAAG+AGG | - | chr2_3:50719980-50719999 | Msa0297080:CDS | 50.0% | |
| AACCACCACCTCCACAACAA+CGG | - | chr2_3:50720026-50720045 | Msa0297080:CDS | 50.0% | |
| AACAACGGCCAACAAGTGGA+TGG | - | chr2_3:50720041-50720060 | Msa0297080:CDS | 50.0% | |
| AGAGAAACTCGAGGAGCAAG+AGG | + | chr2_3:50720299-50720318 | None:intergenic | 50.0% | |
| !! | ACATCAGGTCAAGCATTGGG+TGG | - | chr2_3:50720395-50720414 | Msa0297080:CDS | 50.0% |
| !! | AAGCATTGGGTGGTCACATG+AGG | - | chr2_3:50720405-50720424 | Msa0297080:CDS | 50.0% |
| !! | TTTCAGTTTCCGGCGTTGGT+GGG | - | chr2_3:50720587-50720606 | Msa0297080:CDS | 50.0% |
| ! | GGAAGGAATTATAGGCACCG+AGG | - | chr2_3:50719749-50719768 | Msa0297080:CDS | 50.0% |
| GATGTTGGGCACCTCATCAA+AGG | - | chr2_3:50719783-50719802 | Msa0297080:CDS | 50.0% | |
| TGTCATCGTAGCAGTTGCCA+CGG | + | chr2_3:50719847-50719866 | None:intergenic | 50.0% | |
| CTCAGTGTCATCAAAGGTGG+TGG | + | chr2_3:50719913-50719932 | None:intergenic | 50.0% | |
| GCAAGAAGAGGAAGCAGACA+TGG | - | chr2_3:50719932-50719951 | Msa0297080:CDS | 50.0% | |
| !! | CTTCTGGCTCAAGGAAGAAC+GGG | - | chr2_3:50719969-50719988 | Msa0297080:CDS | 50.0% |
| AGGAAGAACGGGAAGAGAAG+AGG | - | chr2_3:50719980-50719999 | Msa0297080:CDS | 50.0% | |
| AACCACCACCTCCACAACAA+CGG | - | chr2_3:50720026-50720045 | Msa0297080:CDS | 50.0% | |
| AACAACGGCCAACAAGTGGA+TGG | - | chr2_3:50720041-50720060 | Msa0297080:CDS | 50.0% | |
| AGAGAAACTCGAGGAGCAAG+AGG | + | chr2_3:50720299-50720318 | None:intergenic | 50.0% | |
| !! | ACATCAGGTCAAGCATTGGG+TGG | - | chr2_3:50720395-50720414 | Msa0297080:CDS | 50.0% |
| !! | AAGCATTGGGTGGTCACATG+AGG | - | chr2_3:50720405-50720424 | Msa0297080:CDS | 50.0% |
| !! | TTTCAGTTTCCGGCGTTGGT+GGG | - | chr2_3:50720587-50720606 | Msa0297080:CDS | 50.0% |
| AAACGATCCACCACCTCCAG+TGG | + | chr2_3:50719886-50719905 | None:intergenic | 55.0% | |
| ! | TTGTGGAGGTGGTGGTTCTG+AGG | + | chr2_3:50720023-50720042 | None:intergenic | 55.0% |
| CTTGTTGGCCGTTGTTGTGG+AGG | + | chr2_3:50720037-50720056 | None:intergenic | 55.0% | |
| ! | CCACTTGTTGGCCGTTGTTG+TGG | + | chr2_3:50720040-50720059 | None:intergenic | 55.0% |
| CCACAACAACGGCCAACAAG+TGG | - | chr2_3:50720037-50720056 | Msa0297080:CDS | 55.0% | |
| GAATCGCGGAGATCTTCCTC+CGG | + | chr2_3:50720563-50720582 | None:intergenic | 55.0% | |
| GACGTTTCAGTTTCCGGCGT+TGG | - | chr2_3:50720583-50720602 | Msa0297080:CDS | 55.0% | |
| ! | GTTTCAGTTTCCGGCGTTGG+TGG | - | chr2_3:50720586-50720605 | Msa0297080:CDS | 55.0% |
| TAATGGCAACCCACCAACGC+CGG | + | chr2_3:50720599-50720618 | None:intergenic | 55.0% | |
| AAACGATCCACCACCTCCAG+TGG | + | chr2_3:50719886-50719905 | None:intergenic | 55.0% | |
| ! | TTGTGGAGGTGGTGGTTCTG+AGG | + | chr2_3:50720023-50720042 | None:intergenic | 55.0% |
| CTTGTTGGCCGTTGTTGTGG+AGG | + | chr2_3:50720037-50720056 | None:intergenic | 55.0% | |
| ! | CCACTTGTTGGCCGTTGTTG+TGG | + | chr2_3:50720040-50720059 | None:intergenic | 55.0% |
| CCACAACAACGGCCAACAAG+TGG | - | chr2_3:50720037-50720056 | Msa0297080:CDS | 55.0% | |
| GAATCGCGGAGATCTTCCTC+CGG | + | chr2_3:50720563-50720582 | None:intergenic | 55.0% | |
| GACGTTTCAGTTTCCGGCGT+TGG | - | chr2_3:50720583-50720602 | Msa0297080:CDS | 55.0% | |
| ! | GTTTCAGTTTCCGGCGTTGG+TGG | - | chr2_3:50720586-50720605 | Msa0297080:CDS | 55.0% |
| TAATGGCAACCCACCAACGC+CGG | + | chr2_3:50720599-50720618 | None:intergenic | 55.0% | |
| GCAGTTGTCTCCTGTCACCG+TGG | - | chr2_3:50719827-50719846 | Msa0297080:CDS | 60.0% | |
| GTAGCAGTTGCCACGGTGAC+AGG | + | chr2_3:50719840-50719859 | None:intergenic | 60.0% | |
| TCGAGCTGCTCAAGTGCCAC+TGG | - | chr2_3:50719867-50719886 | Msa0297080:CDS | 60.0% | |
| ! | AGCTGCTCAAGTGCCACTGG+AGG | - | chr2_3:50719870-50719889 | Msa0297080:CDS | 60.0% |
| ! | TGCTCAAGTGCCACTGGAGG+TGG | - | chr2_3:50719873-50719892 | Msa0297080:CDS | 60.0% |
| ! | TCAAGTGCCACTGGAGGTGG+TGG | - | chr2_3:50719876-50719895 | Msa0297080:CDS | 60.0% |
| !! | GGTGGTGGTTCTGAGGACGA+CGG | + | chr2_3:50720016-50720035 | None:intergenic | 60.0% |
| GTTGGCCGTTGTTGTGGAGG+TGG | + | chr2_3:50720034-50720053 | None:intergenic | 60.0% | |
| ! | GTGGTGATTTGTCGCGGTCG+CGG | + | chr2_3:50720224-50720243 | None:intergenic | 60.0% |
| ! | CCGGTGGTGGTGATTTGTCG+CGG | + | chr2_3:50720230-50720249 | None:intergenic | 60.0% |
| CCGCGACAAATCACCACCAC+CGG | - | chr2_3:50720227-50720246 | Msa0297080:CDS | 60.0% | |
| GGACCTTAACCTTCCGGCAC+CGG | - | chr2_3:50720541-50720560 | Msa0297080:CDS | 60.0% | |
| GCAGTTGTCTCCTGTCACCG+TGG | - | chr2_3:50719827-50719846 | Msa0297080:CDS | 60.0% | |
| GTAGCAGTTGCCACGGTGAC+AGG | + | chr2_3:50719840-50719859 | None:intergenic | 60.0% | |
| TCGAGCTGCTCAAGTGCCAC+TGG | - | chr2_3:50719867-50719886 | Msa0297080:CDS | 60.0% | |
| ! | AGCTGCTCAAGTGCCACTGG+AGG | - | chr2_3:50719870-50719889 | Msa0297080:CDS | 60.0% |
| ! | TGCTCAAGTGCCACTGGAGG+TGG | - | chr2_3:50719873-50719892 | Msa0297080:CDS | 60.0% |
| ! | TCAAGTGCCACTGGAGGTGG+TGG | - | chr2_3:50719876-50719895 | Msa0297080:CDS | 60.0% |
| !! | GGTGGTGGTTCTGAGGACGA+CGG | + | chr2_3:50720016-50720035 | None:intergenic | 60.0% |
| GTTGGCCGTTGTTGTGGAGG+TGG | + | chr2_3:50720034-50720053 | None:intergenic | 60.0% | |
| ! | GTGGTGATTTGTCGCGGTCG+CGG | + | chr2_3:50720224-50720243 | None:intergenic | 60.0% |
| ! | CCGGTGGTGGTGATTTGTCG+CGG | + | chr2_3:50720230-50720249 | None:intergenic | 60.0% |
| CCGCGACAAATCACCACCAC+CGG | - | chr2_3:50720227-50720246 | Msa0297080:CDS | 60.0% | |
| GGACCTTAACCTTCCGGCAC+CGG | - | chr2_3:50720541-50720560 | Msa0297080:CDS | 60.0% | |
| GGCCGTTGTTGTGGAGGTGG+TGG | + | chr2_3:50720031-50720050 | None:intergenic | 65.0% | |
| ! | GTGATTTGTCGCGGTCGCGG+AGG | + | chr2_3:50720221-50720240 | None:intergenic | 65.0% |
| ! | CCTCCGGTGCCGGAAGGTTA+AGG | + | chr2_3:50720547-50720566 | None:intergenic | 65.0% |
| ! | CCTTAACCTTCCGGCACCGG+AGG | - | chr2_3:50720544-50720563 | Msa0297080:CDS | 65.0% |
| ! | GATCTTCCTCCGGTGCCGGA+AGG | + | chr2_3:50720553-50720572 | None:intergenic | 65.0% |
| CGGAGATCTTCCTCCGGTGC+CGG | + | chr2_3:50720557-50720576 | None:intergenic | 65.0% | |
| GGCCGTTGTTGTGGAGGTGG+TGG | + | chr2_3:50720031-50720050 | None:intergenic | 65.0% | |
| ! | GTGATTTGTCGCGGTCGCGG+AGG | + | chr2_3:50720221-50720240 | None:intergenic | 65.0% |
| ! | CCTCCGGTGCCGGAAGGTTA+AGG | + | chr2_3:50720547-50720566 | None:intergenic | 65.0% |
| ! | CCTTAACCTTCCGGCACCGG+AGG | - | chr2_3:50720544-50720563 | Msa0297080:CDS | 65.0% |
| ! | GATCTTCCTCCGGTGCCGGA+AGG | + | chr2_3:50720553-50720572 | None:intergenic | 65.0% |
| CGGAGATCTTCCTCCGGTGC+CGG | + | chr2_3:50720557-50720576 | None:intergenic | 65.0% | |
| TTGTCGCGGTCGCGGAGGTG+AGG | + | chr2_3:50720216-50720235 | None:intergenic | 70.0% | |
| TTGTCGCGGTCGCGGAGGTG+AGG | + | chr2_3:50720216-50720235 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 50719741 | 50720622 | 50719741 | ID=Msa0297080;Name=Msa0297080 |
| chr2_3 | mRNA | 50719741 | 50720622 | 50719741 | ID=Msa0297080-mRNA-1;Parent=Msa0297080;Name=Msa0297080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|293 |
| chr2_3 | exon | 50719741 | 50720622 | 50719741 | ID=Msa0297080-mRNA-1:exon:15956;Parent=Msa0297080-mRNA-1 |
| chr2_3 | CDS | 50719741 | 50720622 | 50719741 | ID=Msa0297080-mRNA-1:cds;Parent=Msa0297080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
