Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219580 | XP_003597930.2 | 93.284 | 134 | 2 | 1 | 1 | 127 | 1 | 134 | 5.71e-83 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219580 | sp|P42322|CANB1_NAEGR | 40.876 | 137 | 67 | 3 | 1 | 125 | 1 | 135 | 9.38e-26 | 99.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219580 | B7FH75 | 93.284 | 134 | 2 | 1 | 1 | 127 | 1 | 134 | 2.73e-83 | 251 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0219580 | Msa1417560 | 0.819297 | 1.250276e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219580 | MtrunA17_Chr2g0333301 | 93.284 | 134 | 2 | 1 | 1 | 127 | 1 | 134 | 5.25e-87 | 251 |
| Msa0219580 | MtrunA17_Chr4g0073661 | 70.149 | 134 | 33 | 1 | 1 | 127 | 1 | 134 | 3.92e-65 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219580 | AT3G18430.1 | 80.597 | 134 | 19 | 1 | 1 | 127 | 1 | 134 | 7.73e-75 | 221 |
| Msa0219580 | AT3G18430.3 | 80.597 | 134 | 19 | 1 | 1 | 127 | 1 | 134 | 7.73e-75 | 221 |
| Msa0219580 | AT3G18430.2 | 80.597 | 134 | 19 | 1 | 1 | 127 | 1 | 134 | 7.73e-75 | 221 |
Find 39 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTAAATTAGTGAAATTAT+TGG | 0.186279 | 2_1:-67244266 | Msa0219580:five_prime_UTR |
| TAACAATTGATGCACCTTAA+TGG | 0.202872 | 2_1:+67242747 | None:intergenic |
| TACAGAAGCATATAGTTATT+TGG | 0.204369 | 2_1:+67242826 | None:intergenic |
| TGTACTAAATGCAGATAAAA+AGG | 0.239607 | 2_1:+67243244 | None:intergenic |
| AGCAAAGTAAGTTTCCATTA+AGG | 0.305591 | 2_1:-67242761 | Msa0219580:three_prime_UTR |
| TCATCTCCTCATATCATATC+AGG | 0.315446 | 2_1:-67244148 | Msa0219580:intron |
| GAAATGAAATATTCGTATAT+AGG | 0.365092 | 2_1:+67242619 | None:intergenic |
| AGGTTACTCAAGATGGTTGA+TGG | 0.393812 | 2_1:-67243290 | Msa0219580:CDS |
| TGTTATGAATCCACTTTCTC+AGG | 0.398536 | 2_1:-67243714 | Msa0219580:intron |
| GGTGTCTTTCAAAGACATAT+TGG | 0.407546 | 2_1:-67242905 | Msa0219580:CDS |
| ATTTGATTCAGTTTCTCAAC+AGG | 0.411656 | 2_1:-67243828 | Msa0219580:intron |
| GAGATGAGAATTGAGATAGT+TGG | 0.414312 | 2_1:+67244164 | None:intergenic |
| GAAGTTCTAAAAGATTTGTC+TGG | 0.444669 | 2_1:-67242883 | Msa0219580:CDS |
| CAACTTGACAGAAATGCTAA+AGG | 0.478282 | 2_1:-67243776 | Msa0219580:CDS |
| TTTGCAGAGGTTACTCAAGA+TGG | 0.478552 | 2_1:-67243297 | Msa0219580:intron |
| CCAATACAGCACAACTGAAA+AGG | 0.481755 | 2_1:+67242556 | None:intergenic |
| ATTATTGGTATTTATTACTC+AGG | 0.487132 | 2_1:-67244251 | Msa0219580:five_prime_UTR |
| AAGGTGAGTGCAGTGTCCTT+AGG | 0.488728 | 2_1:+67244192 | None:intergenic |
| TAGTATATCAAACTCAACAT+AGG | 0.493046 | 2_1:+67242711 | None:intergenic |
| TGCAGTGTCCTTAGGAAGGA+AGG | 0.494826 | 2_1:+67244200 | None:intergenic |
| ATTGAGATAGTTGGATTCAA+AGG | 0.499420 | 2_1:+67244173 | None:intergenic |
| TGATATGATACCTGAGAAAG+TGG | 0.501757 | 2_1:+67243704 | None:intergenic |
| TCTGCATTTAGTACAAAAGC+TGG | 0.505330 | 2_1:-67243236 | Msa0219580:intron |
| AGTATATCAAACTCAACATA+GGG | 0.518707 | 2_1:+67242712 | None:intergenic |
| GCTAACTCAATATGATATTG+AGG | 0.520808 | 2_1:-67243978 | Msa0219580:CDS |
| GTAACAGTGAATTGAATTGA+TGG | 0.537806 | 2_1:-67244017 | Msa0219580:intron |
| ATTGGTATTTATTACTCAGG+AGG | 0.553881 | 2_1:-67244248 | Msa0219580:five_prime_UTR |
| TAACAGTGAATTGAATTGAT+GGG | 0.554336 | 2_1:-67244016 | Msa0219580:intron |
| GTATATGATTCAGATCGTAA+TGG | 0.556045 | 2_1:-67242931 | Msa0219580:CDS |
| TGAAAGTCCCTTCCTTCCTA+AGG | 0.573001 | 2_1:-67244208 | Msa0219580:five_prime_UTR |
| AGTGGATTCATAACAAACTC+AGG | 0.575670 | 2_1:+67243722 | None:intergenic |
| TGAGTGCAGTGTCCTTAGGA+AGG | 0.592901 | 2_1:+67244196 | None:intergenic |
| ATCAAATCAAATAATGTGTG+CGG | 0.596195 | 2_1:+67244405 | None:intergenic |
| TGATTCAGATCGTAATGGAA+AGG | 0.613377 | 2_1:-67242926 | Msa0219580:CDS |
| CACAACTGAAAAGGTGTGTG+TGG | 0.621142 | 2_1:+67242565 | None:intergenic |
| GCAGTGTCCTTAGGAAGGAA+GGG | 0.630055 | 2_1:+67244201 | None:intergenic |
| CATGTCTGATGATCAAAGAG+AGG | 0.654475 | 2_1:-67242854 | Msa0219580:CDS |
| AAATCAAATAATGTGTGCGG+CGG | 0.661147 | 2_1:+67244408 | None:intergenic |
| AACAGTGAATTGAATTGATG+GGG | 0.680985 | 2_1:-67244015 | Msa0219580:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAAAAAAAAAAGATA+AGG | + | chr2_1:67243065-67243084 | None:intergenic | 10.0% |
| !! | TATGATTATCTAAATTATTT+AGG | + | chr2_1:67243869-67243888 | None:intergenic | 10.0% |
| !! | GAAAAAAAAAAAAAAAGATA+AGG | + | chr2_1:67243065-67243084 | None:intergenic | 10.0% |
| !! | TATGATTATCTAAATTATTT+AGG | + | chr2_1:67243869-67243888 | None:intergenic | 10.0% |
| !! | GATTAAATTAGTGAAATTAT+TGG | - | chr2_1:67242600-67242619 | Msa0219580:three_prime_UTR | 15.0% |
| !! | TAATATTAGATCTTATATTG+AGG | - | chr2_1:67242627-67242646 | Msa0219580:three_prime_UTR | 15.0% |
| !! | ATAATTAAGATCTAATATTG+AGG | + | chr2_1:67242658-67242677 | None:intergenic | 15.0% |
| !! | GATTAAATTAGTGAAATTAT+TGG | - | chr2_1:67242600-67242619 | Msa0219580:three_prime_UTR | 15.0% |
| !! | AAAAAAAAAAAAGATAAGGA+AGG | + | chr2_1:67243061-67243080 | None:intergenic | 15.0% |
| !!! | ATGTATTTACTATTTTATAC+AGG | - | chr2_1:67243506-67243525 | Msa0219580:intron | 15.0% |
| !!! | TTTTATTCTTTATTAGTGTT+TGG | - | chr2_1:67243817-67243836 | Msa0219580:CDS | 15.0% |
| !!! | TTTTATTGGCTTATATTTAA+TGG | + | chr2_1:67244378-67244397 | None:intergenic | 15.0% |
| !! | GATTAAATTAGTGAAATTAT+TGG | - | chr2_1:67242600-67242619 | Msa0219580:three_prime_UTR | 15.0% |
| !! | TAATATTAGATCTTATATTG+AGG | - | chr2_1:67242627-67242646 | Msa0219580:three_prime_UTR | 15.0% |
| !! | ATAATTAAGATCTAATATTG+AGG | + | chr2_1:67242658-67242677 | None:intergenic | 15.0% |
| !! | GATTAAATTAGTGAAATTAT+TGG | - | chr2_1:67242600-67242619 | Msa0219580:three_prime_UTR | 15.0% |
| !! | AAAAAAAAAAAAGATAAGGA+AGG | + | chr2_1:67243061-67243080 | None:intergenic | 15.0% |
| !!! | ATGTATTTACTATTTTATAC+AGG | - | chr2_1:67243506-67243525 | Msa0219580:intron | 15.0% |
| !!! | TTTTATTCTTTATTAGTGTT+TGG | - | chr2_1:67243817-67243836 | Msa0219580:CDS | 15.0% |
| !!! | TTTTATTGGCTTATATTTAA+TGG | + | chr2_1:67244378-67244397 | None:intergenic | 15.0% |
| !! | AAATAATGAAATCAACTAGT+TGG | + | chr2_1:67242681-67242700 | None:intergenic | 20.0% |
| !! | ATTATTGGTATTTATTACTC+AGG | - | chr2_1:67242721-67242740 | Msa0219580:three_prime_UTR | 20.0% |
| !! | ACACATTTATTTAATTGAGT+CGG | + | chr2_1:67243382-67243401 | None:intergenic | 20.0% |
| !! | ACTCAATTAAATAAATGTGT+TGG | - | chr2_1:67243382-67243401 | Msa0219580:intron | 20.0% |
| !! | ACATAATTTCAGACTTATTA+AGG | + | chr2_1:67243565-67243584 | None:intergenic | 20.0% |
| !!! | TTTGAATTTTAAAGACTTTG+TGG | - | chr2_1:67243705-67243724 | Msa0219580:intron | 20.0% |
| !! | ATCATAAATTAGAAGATTTC+AGG | - | chr2_1:67243883-67243902 | Msa0219580:intron | 20.0% |
| !! | TTCAACTAAATCCTTTAATT+AGG | - | chr2_1:67243970-67243989 | Msa0219580:CDS | 20.0% |
| !! | TCAACTAAATCCTTTAATTA+GGG | - | chr2_1:67243971-67243990 | Msa0219580:CDS | 20.0% |
| !! | GAAATGAAATATTCGTATAT+AGG | + | chr2_1:67244356-67244375 | None:intergenic | 20.0% |
| !!! | TGTGGAAAAAAGTTTTTTAT+TGG | + | chr2_1:67244392-67244411 | None:intergenic | 20.0% |
| !! | AAATAATGAAATCAACTAGT+TGG | + | chr2_1:67242681-67242700 | None:intergenic | 20.0% |
| !! | ATTATTGGTATTTATTACTC+AGG | - | chr2_1:67242721-67242740 | Msa0219580:three_prime_UTR | 20.0% |
| !! | ACACATTTATTTAATTGAGT+CGG | + | chr2_1:67243382-67243401 | None:intergenic | 20.0% |
| !! | ACTCAATTAAATAAATGTGT+TGG | - | chr2_1:67243382-67243401 | Msa0219580:intron | 20.0% |
| !! | ACATAATTTCAGACTTATTA+AGG | + | chr2_1:67243565-67243584 | None:intergenic | 20.0% |
| !!! | TTTGAATTTTAAAGACTTTG+TGG | - | chr2_1:67243705-67243724 | Msa0219580:intron | 20.0% |
| !! | ATCATAAATTAGAAGATTTC+AGG | - | chr2_1:67243883-67243902 | Msa0219580:intron | 20.0% |
| !! | TTCAACTAAATCCTTTAATT+AGG | - | chr2_1:67243970-67243989 | Msa0219580:CDS | 20.0% |
| !! | TCAACTAAATCCTTTAATTA+GGG | - | chr2_1:67243971-67243990 | Msa0219580:CDS | 20.0% |
| !! | GAAATGAAATATTCGTATAT+AGG | + | chr2_1:67244356-67244375 | None:intergenic | 20.0% |
| !!! | TGTGGAAAAAAGTTTTTTAT+TGG | + | chr2_1:67244392-67244411 | None:intergenic | 20.0% |
| ! | ATCAAATCAAATAATGTGTG+CGG | + | chr2_1:67242570-67242589 | None:intergenic | 25.0% |
| ! | AGAAGAATTGAAATTAGAGT+AGG | + | chr2_1:67242903-67242922 | None:intergenic | 25.0% |
| ! | TAACAGTGAATTGAATTGAT+GGG | - | chr2_1:67242956-67242975 | Msa0219580:intron | 25.0% |
| ! | ACATTTATTTAATTGAGTCG+GGG | + | chr2_1:67243380-67243399 | None:intergenic | 25.0% |
| ! | CACATTTATTTAATTGAGTC+GGG | + | chr2_1:67243381-67243400 | None:intergenic | 25.0% |
| ! | TGTACTAAATGCAGATAAAA+AGG | + | chr2_1:67243731-67243750 | None:intergenic | 25.0% |
| !! | AAGAATAAAATCTGAAGCAA+TGG | + | chr2_1:67243807-67243826 | None:intergenic | 25.0% |
| ! | ATTCTTTATTAGTGTTTGGA+TGG | - | chr2_1:67243821-67243840 | Msa0219580:intron | 25.0% |
| ! | ACTATAAGTACCCTAATTAA+AGG | + | chr2_1:67243984-67244003 | None:intergenic | 25.0% |
| !! | TACAGAAGCATATAGTTATT+TGG | + | chr2_1:67244149-67244168 | None:intergenic | 25.0% |
| ! | AGTATATCAAACTCAACATA+GGG | + | chr2_1:67244263-67244282 | None:intergenic | 25.0% |
| ! | TAGTATATCAAACTCAACAT+AGG | + | chr2_1:67244264-67244283 | None:intergenic | 25.0% |
| ! | ATCAAATCAAATAATGTGTG+CGG | + | chr2_1:67242570-67242589 | None:intergenic | 25.0% |
| ! | AGAAGAATTGAAATTAGAGT+AGG | + | chr2_1:67242903-67242922 | None:intergenic | 25.0% |
| ! | TAACAGTGAATTGAATTGAT+GGG | - | chr2_1:67242956-67242975 | Msa0219580:intron | 25.0% |
| ! | ACATTTATTTAATTGAGTCG+GGG | + | chr2_1:67243380-67243399 | None:intergenic | 25.0% |
| ! | CACATTTATTTAATTGAGTC+GGG | + | chr2_1:67243381-67243400 | None:intergenic | 25.0% |
| ! | TGTACTAAATGCAGATAAAA+AGG | + | chr2_1:67243731-67243750 | None:intergenic | 25.0% |
| !! | AAGAATAAAATCTGAAGCAA+TGG | + | chr2_1:67243807-67243826 | None:intergenic | 25.0% |
| ! | ATTCTTTATTAGTGTTTGGA+TGG | - | chr2_1:67243821-67243840 | Msa0219580:intron | 25.0% |
| ! | ACTATAAGTACCCTAATTAA+AGG | + | chr2_1:67243984-67244003 | None:intergenic | 25.0% |
| !! | TACAGAAGCATATAGTTATT+TGG | + | chr2_1:67244149-67244168 | None:intergenic | 25.0% |
| ! | AGTATATCAAACTCAACATA+GGG | + | chr2_1:67244263-67244282 | None:intergenic | 25.0% |
| ! | TAGTATATCAAACTCAACAT+AGG | + | chr2_1:67244264-67244283 | None:intergenic | 25.0% |
| ATTGGTATTTATTACTCAGG+AGG | - | chr2_1:67242724-67242743 | Msa0219580:three_prime_UTR | 30.0% | |
| ATTGAGATAGTTGGATTCAA+AGG | + | chr2_1:67242802-67242821 | None:intergenic | 30.0% | |
| GAAAAACCTGATATGATATG+AGG | + | chr2_1:67242833-67242852 | None:intergenic | 30.0% | |
| GAATTGAAATTAGAGTAGGA+GGG | + | chr2_1:67242899-67242918 | None:intergenic | 30.0% | |
| AGAATTGAAATTAGAGTAGG+AGG | + | chr2_1:67242900-67242919 | None:intergenic | 30.0% | |
| GTAACAGTGAATTGAATTGA+TGG | - | chr2_1:67242955-67242974 | Msa0219580:intron | 30.0% | |
| AACAGTGAATTGAATTGATG+GGG | - | chr2_1:67242957-67242976 | Msa0219580:intron | 30.0% | |
| GCTAACTCAATATGATATTG+AGG | - | chr2_1:67242994-67243013 | Msa0219580:intron | 30.0% | |
| AATCATTTATGTATGTCCTG+TGG | - | chr2_1:67243034-67243053 | Msa0219580:intron | 30.0% | |
| ATTTGATTCAGTTTCTCAAC+AGG | - | chr2_1:67243144-67243163 | Msa0219580:intron | 30.0% | |
| !!! | GTACTACTGTTTTTTAGAGA+CGG | + | chr2_1:67243624-67243643 | None:intergenic | 30.0% |
| ! | AAAACGTACGTTCAACTTTT+TGG | + | chr2_1:67243768-67243787 | None:intergenic | 30.0% |
| GTATATGATTCAGATCGTAA+TGG | - | chr2_1:67244041-67244060 | Msa0219580:intron | 30.0% | |
| !! | GAAGTTCTAAAAGATTTGTC+TGG | - | chr2_1:67244089-67244108 | Msa0219580:intron | 30.0% |
| AGCAAAGTAAGTTTCCATTA+AGG | - | chr2_1:67244211-67244230 | Msa0219580:five_prime_UTR | 30.0% | |
| TAACAATTGATGCACCTTAA+TGG | + | chr2_1:67244228-67244247 | None:intergenic | 30.0% | |
| ATTGGTATTTATTACTCAGG+AGG | - | chr2_1:67242724-67242743 | Msa0219580:three_prime_UTR | 30.0% | |
| ATTGAGATAGTTGGATTCAA+AGG | + | chr2_1:67242802-67242821 | None:intergenic | 30.0% | |
| GAAAAACCTGATATGATATG+AGG | + | chr2_1:67242833-67242852 | None:intergenic | 30.0% | |
| GAATTGAAATTAGAGTAGGA+GGG | + | chr2_1:67242899-67242918 | None:intergenic | 30.0% | |
| AGAATTGAAATTAGAGTAGG+AGG | + | chr2_1:67242900-67242919 | None:intergenic | 30.0% | |
| GTAACAGTGAATTGAATTGA+TGG | - | chr2_1:67242955-67242974 | Msa0219580:intron | 30.0% | |
| AACAGTGAATTGAATTGATG+GGG | - | chr2_1:67242957-67242976 | Msa0219580:intron | 30.0% | |
| GCTAACTCAATATGATATTG+AGG | - | chr2_1:67242994-67243013 | Msa0219580:intron | 30.0% | |
| AATCATTTATGTATGTCCTG+TGG | - | chr2_1:67243034-67243053 | Msa0219580:intron | 30.0% | |
| ATTTGATTCAGTTTCTCAAC+AGG | - | chr2_1:67243144-67243163 | Msa0219580:intron | 30.0% | |
| !!! | GTACTACTGTTTTTTAGAGA+CGG | + | chr2_1:67243624-67243643 | None:intergenic | 30.0% |
| ! | AAAACGTACGTTCAACTTTT+TGG | + | chr2_1:67243768-67243787 | None:intergenic | 30.0% |
| GTATATGATTCAGATCGTAA+TGG | - | chr2_1:67244041-67244060 | Msa0219580:intron | 30.0% | |
| !! | GAAGTTCTAAAAGATTTGTC+TGG | - | chr2_1:67244089-67244108 | Msa0219580:intron | 30.0% |
| AGCAAAGTAAGTTTCCATTA+AGG | - | chr2_1:67244211-67244230 | Msa0219580:five_prime_UTR | 30.0% | |
| TAACAATTGATGCACCTTAA+TGG | + | chr2_1:67244228-67244247 | None:intergenic | 30.0% | |
| AAATCAAATAATGTGTGCGG+CGG | + | chr2_1:67242567-67242586 | None:intergenic | 35.0% | |
| GAGATGAGAATTGAGATAGT+TGG | + | chr2_1:67242811-67242830 | None:intergenic | 35.0% | |
| TCATCTCCTCATATCATATC+AGG | - | chr2_1:67242824-67242843 | Msa0219580:CDS | 35.0% | |
| CAACTTGACAGAAATGCTAA+AGG | - | chr2_1:67243196-67243215 | Msa0219580:intron | 35.0% | |
| ! | AGTGGATTCATAACAAACTC+AGG | + | chr2_1:67243253-67243272 | None:intergenic | 35.0% |
| TGTTATGAATCCACTTTCTC+AGG | - | chr2_1:67243258-67243277 | Msa0219580:CDS | 35.0% | |
| TGATATGATACCTGAGAAAG+TGG | + | chr2_1:67243271-67243290 | None:intergenic | 35.0% | |
| TAAGCAATCAAAGCATAGAG+TGG | + | chr2_1:67243442-67243461 | None:intergenic | 35.0% | |
| AGAAGATGTCCACTATATGT+AGG | - | chr2_1:67243470-67243489 | Msa0219580:intron | 35.0% | |
| GAAGATGTCCACTATATGTA+GGG | - | chr2_1:67243471-67243490 | Msa0219580:intron | 35.0% | |
| !!! | TACTGTTTTTTAGAGACGGA+GGG | + | chr2_1:67243620-67243639 | None:intergenic | 35.0% |
| GTTTGTGTACTTATTTGCAG+AGG | - | chr2_1:67243662-67243681 | Msa0219580:intron | 35.0% | |
| TCTGCATTTAGTACAAAAGC+TGG | - | chr2_1:67243736-67243755 | Msa0219580:CDS | 35.0% | |
| ! | TGATTCAGATCGTAATGGAA+AGG | - | chr2_1:67244046-67244065 | Msa0219580:intron | 35.0% |
| GGTGTCTTTCAAAGACATAT+TGG | - | chr2_1:67244067-67244086 | Msa0219580:intron | 35.0% | |
| AAATCAAATAATGTGTGCGG+CGG | + | chr2_1:67242567-67242586 | None:intergenic | 35.0% | |
| GAGATGAGAATTGAGATAGT+TGG | + | chr2_1:67242811-67242830 | None:intergenic | 35.0% | |
| TCATCTCCTCATATCATATC+AGG | - | chr2_1:67242824-67242843 | Msa0219580:CDS | 35.0% | |
| CAACTTGACAGAAATGCTAA+AGG | - | chr2_1:67243196-67243215 | Msa0219580:intron | 35.0% | |
| ! | AGTGGATTCATAACAAACTC+AGG | + | chr2_1:67243253-67243272 | None:intergenic | 35.0% |
| TGTTATGAATCCACTTTCTC+AGG | - | chr2_1:67243258-67243277 | Msa0219580:CDS | 35.0% | |
| TGATATGATACCTGAGAAAG+TGG | + | chr2_1:67243271-67243290 | None:intergenic | 35.0% | |
| TAAGCAATCAAAGCATAGAG+TGG | + | chr2_1:67243442-67243461 | None:intergenic | 35.0% | |
| AGAAGATGTCCACTATATGT+AGG | - | chr2_1:67243470-67243489 | Msa0219580:intron | 35.0% | |
| GAAGATGTCCACTATATGTA+GGG | - | chr2_1:67243471-67243490 | Msa0219580:intron | 35.0% | |
| !!! | TACTGTTTTTTAGAGACGGA+GGG | + | chr2_1:67243620-67243639 | None:intergenic | 35.0% |
| GTTTGTGTACTTATTTGCAG+AGG | - | chr2_1:67243662-67243681 | Msa0219580:intron | 35.0% | |
| TCTGCATTTAGTACAAAAGC+TGG | - | chr2_1:67243736-67243755 | Msa0219580:CDS | 35.0% | |
| ! | TGATTCAGATCGTAATGGAA+AGG | - | chr2_1:67244046-67244065 | Msa0219580:intron | 35.0% |
| GGTGTCTTTCAAAGACATAT+TGG | - | chr2_1:67244067-67244086 | Msa0219580:intron | 35.0% | |
| AAAAGATAAGGAAGGACCAC+AGG | + | chr2_1:67243053-67243072 | None:intergenic | 40.0% | |
| TATCCTAGCCCTACATATAG+TGG | + | chr2_1:67243482-67243501 | None:intergenic | 40.0% | |
| !!! | CTACTGTTTTTTAGAGACGG+AGG | + | chr2_1:67243621-67243640 | None:intergenic | 40.0% |
| TTTGCAGAGGTTACTCAAGA+TGG | - | chr2_1:67243675-67243694 | Msa0219580:intron | 40.0% | |
| AGGTTACTCAAGATGGTTGA+TGG | - | chr2_1:67243682-67243701 | Msa0219580:intron | 40.0% | |
| CATGTCTGATGATCAAAGAG+AGG | - | chr2_1:67244118-67244137 | Msa0219580:intron | 40.0% | |
| CCAATACAGCACAACTGAAA+AGG | + | chr2_1:67244419-67244438 | None:intergenic | 40.0% | |
| ! | CCTTTTCAGTTGTGCTGTAT+TGG | - | chr2_1:67244416-67244435 | Msa0219580:five_prime_UTR | 40.0% |
| AAAAGATAAGGAAGGACCAC+AGG | + | chr2_1:67243053-67243072 | None:intergenic | 40.0% | |
| TATCCTAGCCCTACATATAG+TGG | + | chr2_1:67243482-67243501 | None:intergenic | 40.0% | |
| !!! | CTACTGTTTTTTAGAGACGG+AGG | + | chr2_1:67243621-67243640 | None:intergenic | 40.0% |
| TTTGCAGAGGTTACTCAAGA+TGG | - | chr2_1:67243675-67243694 | Msa0219580:intron | 40.0% | |
| AGGTTACTCAAGATGGTTGA+TGG | - | chr2_1:67243682-67243701 | Msa0219580:intron | 40.0% | |
| CATGTCTGATGATCAAAGAG+AGG | - | chr2_1:67244118-67244137 | Msa0219580:intron | 40.0% | |
| CCAATACAGCACAACTGAAA+AGG | + | chr2_1:67244419-67244438 | None:intergenic | 40.0% | |
| ! | CCTTTTCAGTTGTGCTGTAT+TGG | - | chr2_1:67244416-67244435 | Msa0219580:five_prime_UTR | 40.0% |
| TGAAAGTCCCTTCCTTCCTA+AGG | - | chr2_1:67242764-67242783 | Msa0219580:three_prime_UTR | 45.0% | |
| TGTCCACTATATGTAGGGCT+AGG | - | chr2_1:67243476-67243495 | Msa0219580:intron | 45.0% | |
| ! | CACAACTGAAAAGGTGTGTG+TGG | + | chr2_1:67244410-67244429 | None:intergenic | 45.0% |
| TGAAAGTCCCTTCCTTCCTA+AGG | - | chr2_1:67242764-67242783 | Msa0219580:three_prime_UTR | 45.0% | |
| TGTCCACTATATGTAGGGCT+AGG | - | chr2_1:67243476-67243495 | Msa0219580:intron | 45.0% | |
| ! | CACAACTGAAAAGGTGTGTG+TGG | + | chr2_1:67244410-67244429 | None:intergenic | 45.0% |
| GCAGTGTCCTTAGGAAGGAA+GGG | + | chr2_1:67242774-67242793 | None:intergenic | 50.0% | |
| TGCAGTGTCCTTAGGAAGGA+AGG | + | chr2_1:67242775-67242794 | None:intergenic | 50.0% | |
| TGAGTGCAGTGTCCTTAGGA+AGG | + | chr2_1:67242779-67242798 | None:intergenic | 50.0% | |
| AAGGTGAGTGCAGTGTCCTT+AGG | + | chr2_1:67242783-67242802 | None:intergenic | 50.0% | |
| GCAGTGTCCTTAGGAAGGAA+GGG | + | chr2_1:67242774-67242793 | None:intergenic | 50.0% | |
| TGCAGTGTCCTTAGGAAGGA+AGG | + | chr2_1:67242775-67242794 | None:intergenic | 50.0% | |
| TGAGTGCAGTGTCCTTAGGA+AGG | + | chr2_1:67242779-67242798 | None:intergenic | 50.0% | |
| AAGGTGAGTGCAGTGTCCTT+AGG | + | chr2_1:67242783-67242802 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 67242554 | 67244440 | 67242554 | ID=Msa0219580;Name=Msa0219580 |
| chr2_1 | mRNA | 67242554 | 67244440 | 67242554 | ID=Msa0219580-mRNA-1;Parent=Msa0219580;Name=Msa0219580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=198|0.8|0.83|1|0.6|0.5|6|262|139 |
| chr2_1 | exon | 67242554 | 67242964 | 67242554 | ID=Msa0219580-mRNA-1:exon:19001;Parent=Msa0219580-mRNA-1 |
| chr2_1 | exon | 67243237 | 67243312 | 67243237 | ID=Msa0219580-mRNA-1:exon:19000;Parent=Msa0219580-mRNA-1 |
| chr2_1 | exon | 67243715 | 67243839 | 67243715 | ID=Msa0219580-mRNA-1:exon:18999;Parent=Msa0219580-mRNA-1 |
| chr2_1 | exon | 67243951 | 67244032 | 67243951 | ID=Msa0219580-mRNA-1:exon:18998;Parent=Msa0219580-mRNA-1 |
| chr2_1 | exon | 67244149 | 67244290 | 67244149 | ID=Msa0219580-mRNA-1:exon:18997;Parent=Msa0219580-mRNA-1 |
| chr2_1 | exon | 67244397 | 67244440 | 67244397 | ID=Msa0219580-mRNA-1:exon:18996;Parent=Msa0219580-mRNA-1 |
| chr2_1 | five_prime_UTR | 67244397 | 67244440 | 67244397 | ID=Msa0219580-mRNA-1:five_prime_utr;Parent=Msa0219580-mRNA-1 |
| chr2_1 | five_prime_UTR | 67244149 | 67244290 | 67244149 | ID=Msa0219580-mRNA-1:five_prime_utr;Parent=Msa0219580-mRNA-1 |
| chr2_1 | five_prime_UTR | 67244021 | 67244032 | 67244021 | ID=Msa0219580-mRNA-1:five_prime_utr;Parent=Msa0219580-mRNA-1 |
| chr2_1 | CDS | 67243951 | 67244020 | 67243951 | ID=Msa0219580-mRNA-1:cds;Parent=Msa0219580-mRNA-1 |
| chr2_1 | CDS | 67243715 | 67243839 | 67243715 | ID=Msa0219580-mRNA-1:cds;Parent=Msa0219580-mRNA-1 |
| chr2_1 | CDS | 67243237 | 67243312 | 67243237 | ID=Msa0219580-mRNA-1:cds;Parent=Msa0219580-mRNA-1 |
| chr2_1 | CDS | 67242816 | 67242964 | 67242816 | ID=Msa0219580-mRNA-1:cds;Parent=Msa0219580-mRNA-1 |
| chr2_1 | three_prime_UTR | 67242554 | 67242815 | 67242554 | ID=Msa0219580-mRNA-1:three_prime_utr;Parent=Msa0219580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
