Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417560 | sp|P42322|CANB1_NAEGR | 37.500 | 168 | 91 | 3 | 1 | 156 | 1 | 166 | 6.89e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417560 | B7FH75 | 94.857 | 175 | 2 | 1 | 1 | 168 | 1 | 175 | 4.68e-115 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0219580 | Msa1417560 | 0.819297 | 1.250276e-52 | -8.615850e-47 |
| Msa0304960 | Msa1417560 | 0.850635 | 1.494888e-60 | -8.615850e-47 |
| Msa0305080 | Msa1417560 | 0.811565 | 6.568807e-51 | -8.615850e-47 |
| Msa0341360 | Msa1417560 | 0.812659 | 3.793489e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417560 | MtrunA17_Chr2g0333301 | 94.857 | 175 | 2 | 1 | 1 | 168 | 1 | 175 | 9.01e-119 | 332 |
| Msa1417560 | MtrunA17_Chr4g0073661 | 69.143 | 175 | 47 | 1 | 1 | 168 | 1 | 175 | 3.36e-87 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417560 | AT3G18430.1 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
| Msa1417560 | AT3G18430.3 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
| Msa1417560 | AT3G18430.2 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
Find 57 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAGGTTCTTGGCCATTC+TGG | 0.182957 | tig0024490:+78239 | Msa1417560:intron |
| GATTAAATTAGTGAAATTAT+TGG | 0.186279 | tig0024490:+76202 | Msa1417560:five_prime_UTR |
| TTCAGCTTGTTCCACTAAAT+TGG | 0.223800 | tig0024490:-78580 | None:intergenic |
| TGTACTAAATGCAGATAAAA+AGG | 0.239607 | tig0024490:-77231 | None:intergenic |
| GACATTGGATGATTTCATTA+AGG | 0.296420 | tig0024490:+78043 | Msa1417560:CDS |
| ATTTGAAACTTCCAATTTAG+TGG | 0.305172 | tig0024490:+78569 | Msa1417560:three_prime_UTR |
| ACTGACTCAAGTTTGAATTC+AGG | 0.314102 | tig0024490:-78539 | None:intergenic |
| TCATCTCCTCATATCATATC+AGG | 0.315446 | tig0024490:+76401 | Msa1417560:five_prime_UTR |
| TATCCCCATTGGAGCTGATT+TGG | 0.321972 | tig0024490:+78453 | Msa1417560:three_prime_UTR |
| TTAAATTTGTCACAGGTTCT+TGG | 0.342309 | tig0024490:+78230 | Msa1417560:intron |
| AGTTTACCCTGTTCTCTTGA+AGG | 0.361059 | tig0024490:+78307 | Msa1417560:three_prime_UTR |
| TTTGATTTCTCAGGAAGTCT+TGG | 0.366861 | tig0024490:+77977 | Msa1417560:intron |
| ATTTCATCCTTCAAGAGAAC+AGG | 0.368655 | tig0024490:-78314 | None:intergenic |
| TCATATGAACTTTGGTTGAT+TGG | 0.376248 | tig0024490:-78624 | None:intergenic |
| TTGATTTCTCAGGAAGTCTT+GGG | 0.378929 | tig0024490:+77978 | Msa1417560:intron |
| AGGTTACTCAAGATGGTTGA+TGG | 0.393812 | tig0024490:+77185 | Msa1417560:CDS |
| TGTTATGAATCCACTTTCTC+AGG | 0.398536 | tig0024490:+76816 | Msa1417560:CDS |
| GGTGTCTTTCAAAGACATAT+TGG | 0.407546 | tig0024490:+77566 | Msa1417560:CDS |
| ATTTGATTCAGTTTCTCAAC+AGG | 0.411656 | tig0024490:+76702 | Msa1417560:intron |
| CTTCCTGCCACTATCCCCAT+TGG | 0.413036 | tig0024490:+78442 | Msa1417560:three_prime_UTR |
| GAGATGAGAATTGAGATAGT+TGG | 0.414312 | tig0024490:-76385 | None:intergenic |
| AGCTGAAATGATTTCAATGC+TGG | 0.422375 | tig0024490:+78596 | Msa1417560:three_prime_UTR |
| GAAATTGTAAACTGTATTCA+TGG | 0.427606 | tig0024490:+78332 | Msa1417560:three_prime_UTR |
| GAAGTTCTAAAAGATTTGTC+TGG | 0.444669 | tig0024490:+77588 | Msa1417560:CDS |
| CTGACTCAAGTTTGAATTCA+GGG | 0.454749 | tig0024490:-78538 | None:intergenic |
| ATCAGCTCCAATGGGGATAG+TGG | 0.462785 | tig0024490:-78449 | None:intergenic |
| ATCCTGCTTCTTTCAGAACC+TGG | 0.474604 | tig0024490:-78001 | None:intergenic |
| TTCTCAGGAAGTCTTGGGCC+AGG | 0.475351 | tig0024490:+77983 | Msa1417560:intron |
| AGAAATGTTCATATGAACTT+TGG | 0.475865 | tig0024490:-78632 | None:intergenic |
| CAACTTGACAGAAATGCTAA+AGG | 0.478282 | tig0024490:+76754 | Msa1417560:CDS |
| TTTGCAGAGGTTACTCAAGA+TGG | 0.478552 | tig0024490:+77178 | Msa1417560:intron |
| GCTACCAAATCAGCTCCAAT+GGG | 0.484232 | tig0024490:-78457 | None:intergenic |
| AAGGTGAGTGCAGTGTCCTT+AGG | 0.488728 | tig0024490:-76357 | None:intergenic |
| ATTGGTATTTATTACTACTC+AGG | 0.488896 | tig0024490:+76220 | Msa1417560:five_prime_UTR |
| TGCAGTGTCCTTAGGAAGGA+AGG | 0.494826 | tig0024490:-76349 | None:intergenic |
| ATTGAGATAGTTGGATTCAA+AGG | 0.499420 | tig0024490:-76376 | None:intergenic |
| TGATATGATACCTGAGAAAG+TGG | 0.501757 | tig0024490:-76826 | None:intergenic |
| TCTGCATTTAGTACAAAAGC+TGG | 0.505330 | tig0024490:+77239 | Msa1417560:CDS |
| AGCTACCAAATCAGCTCCAA+TGG | 0.511364 | tig0024490:-78458 | None:intergenic |
| GCTAACTCAATATGATATTG+AGG | 0.520808 | tig0024490:+76571 | Msa1417560:CDS |
| CAAGGTTATAAAATATGTCC+AGG | 0.529066 | tig0024490:-78508 | None:intergenic |
| GCTCCAATGGGGATAGTGGC+AGG | 0.529705 | tig0024490:-78445 | None:intergenic |
| GGCCAGGTTCTGAAAGAAGC+AGG | 0.530644 | tig0024490:+77999 | Msa1417560:CDS |
| TGAATTCAGGGAACCAAACA+AGG | 0.536734 | tig0024490:-78526 | None:intergenic |
| GTAACAGTGAATTGAATTGA+TGG | 0.537806 | tig0024490:+76532 | Msa1417560:intron |
| TAACAGTGAATTGAATTGAT+GGG | 0.554336 | tig0024490:+76533 | Msa1417560:intron |
| GTATATGATTCAGATCGTAA+TGG | 0.556045 | tig0024490:+77540 | Msa1417560:CDS |
| AAAAGACTGCTACTTGACAT+TGG | 0.563411 | tig0024490:+78028 | Msa1417560:CDS |
| AGTGGATTCATAACAAACTC+AGG | 0.575670 | tig0024490:-76808 | None:intergenic |
| GGTATTTATTACTACTCAGG+AGG | 0.585922 | tig0024490:+76223 | Msa1417560:five_prime_UTR |
| TGAGTGCAGTGTCCTTAGGA+AGG | 0.592901 | tig0024490:-76353 | None:intergenic |
| TGATTCAGATCGTAATGGAA+AGG | 0.613377 | tig0024490:+77545 | Msa1417560:CDS |
| GCAGTGTCCTTAGGAAGGAA+GGG | 0.630055 | tig0024490:-76348 | None:intergenic |
| TTTCATCCTTCAAGAGAACA+GGG | 0.644647 | tig0024490:-78313 | None:intergenic |
| CATGTCTGATGATCAAAGAG+AGG | 0.654475 | tig0024490:+77617 | Msa1417560:CDS |
| AACAGTGAATTGAATTGATG+GGG | 0.680985 | tig0024490:+76534 | Msa1417560:intron |
| CTACCAAATCAGCTCCAATG+GGG | 0.729628 | tig0024490:-78456 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGATTATCTAAATTATTT+AGG | - | tig0024490:77372-77391 | None:intergenic | 10.0% |
| !! | GATTAAATTAGTGAAATTAT+TGG | + | tig0024490:76202-76221 | Msa1417560:five_prime_UTR | 15.0% |
| !! | ATATATATAATATATACAGG+TGG | - | tig0024490:76309-76328 | None:intergenic | 15.0% |
| !!! | TTTTATGAAAATGGTATATT+TGG | - | tig0024490:77008-77027 | None:intergenic | 15.0% |
| !!! | TTTTATTCTTTATTAGTGTT+TGG | + | tig0024490:77320-77339 | Msa1417560:intron | 15.0% |
| !!! | TTTTATTGGCTTTTATTTAA+TGG | - | tig0024490:77877-77896 | None:intergenic | 15.0% |
| !!! | ATTTTCTTATATATCTCTTT+TGG | + | tig0024490:78073-78092 | Msa1417560:intron | 15.0% |
| !! | TTTATATTTAAATTTGTCAC+AGG | + | tig0024490:78223-78242 | Msa1417560:intron | 15.0% |
| !! | ACACATTTATTTAATTGAGT+CGG | - | tig0024490:76940-76959 | None:intergenic | 20.0% |
| !! | ACTCAATTAAATAAATGTGT+TGG | + | tig0024490:76940-76959 | Msa1417560:intron | 20.0% |
| !!! | ATGTGTTTACTATTTTATAC+AGG | + | tig0024490:77110-77129 | Msa1417560:intron | 20.0% |
| !!! | TTTGAATTTTAAAGACTTTG+TGG | + | tig0024490:77208-77227 | Msa1417560:CDS | 20.0% |
| !! | ATCATAAATTAGAAGATTTC+AGG | + | tig0024490:77386-77405 | Msa1417560:intron | 20.0% |
| !! | GAAATGAAATATTCGTATAT+AGG | - | tig0024490:77855-77874 | None:intergenic | 20.0% |
| !!! | TGTGGAAAAAAGTTTTTTAT+TGG | - | tig0024490:77891-77910 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAAGAAACTCTTT+TGG | + | tig0024490:78108-78127 | Msa1417560:intron | 20.0% |
| !!! | GTTCTTTCTAATTGTAATTT+TGG | + | tig0024490:78178-78197 | Msa1417560:intron | 20.0% |
| !!! | ACATATTTTATAACCTTGTT+TGG | + | tig0024490:78513-78532 | Msa1417560:three_prime_UTR | 20.0% |
| ! | ATTGGTATTTATTACTACTC+AGG | + | tig0024490:76220-76239 | Msa1417560:five_prime_UTR | 25.0% |
| ! | ACAAGAATTGAAATTAGAGT+AGG | - | tig0024490:76480-76499 | None:intergenic | 25.0% |
| ! | TAACAGTGAATTGAATTGAT+GGG | + | tig0024490:76533-76552 | Msa1417560:intron | 25.0% |
| ! | AGAAGAAGAAGAAAAAGATA+AGG | - | tig0024490:76642-76661 | None:intergenic | 25.0% |
| ! | ACATTTATTTAATTGAGTCG+GGG | - | tig0024490:76938-76957 | None:intergenic | 25.0% |
| ! | CACATTTATTTAATTGAGTC+GGG | - | tig0024490:76939-76958 | None:intergenic | 25.0% |
| ! | TGTACTAAATGCAGATAAAA+AGG | - | tig0024490:77234-77253 | None:intergenic | 25.0% |
| !! | AAGAATAAAATCTGAAGCAA+TGG | - | tig0024490:77310-77329 | None:intergenic | 25.0% |
| ! | ATTCTTTATTAGTGTTTGGA+TGG | + | tig0024490:77324-77343 | Msa1417560:intron | 25.0% |
| ! | TTCAACTAAGTCCTTTAATT+AGG | + | tig0024490:77473-77492 | Msa1417560:intron | 25.0% |
| ! | TCAACTAAGTCCTTTAATTA+GGG | + | tig0024490:77474-77493 | Msa1417560:intron | 25.0% |
| ! | ACTATAAGTACCCTAATTAA+AGG | - | tig0024490:77487-77506 | None:intergenic | 25.0% |
| !! | TACAGAAGCATATAGTTATT+TGG | - | tig0024490:77648-77667 | None:intergenic | 25.0% |
| ! | AGTATATCAAACTCAACATA+GGG | - | tig0024490:77762-77781 | None:intergenic | 25.0% |
| ! | TAGTATATCAAACTCAACAT+AGG | - | tig0024490:77763-77782 | None:intergenic | 25.0% |
| !!! | ACAAGCAAATTTTAATCAAC+AGG | - | tig0024490:78287-78306 | None:intergenic | 25.0% |
| ! | GAAATTGTAAACTGTATTCA+TGG | + | tig0024490:78332-78351 | Msa1417560:three_prime_UTR | 25.0% |
| !! | TTTTTGTGTAATAGTTCATG+TGG | + | tig0024490:78357-78376 | Msa1417560:three_prime_UTR | 25.0% |
| !!! | GTAGCTTTTTAGTTTGATTA+AGG | + | tig0024490:78475-78494 | Msa1417560:three_prime_UTR | 25.0% |
| !! | ATTTGAAACTTCCAATTTAG+TGG | + | tig0024490:78569-78588 | Msa1417560:three_prime_UTR | 25.0% |
| ATTGAGATAGTTGGATTCAA+AGG | - | tig0024490:76379-76398 | None:intergenic | 30.0% | |
| GAAAAACCTGATATGATATG+AGG | - | tig0024490:76410-76429 | None:intergenic | 30.0% | |
| GAATTGAAATTAGAGTAGGA+GGG | - | tig0024490:76476-76495 | None:intergenic | 30.0% | |
| AGAATTGAAATTAGAGTAGG+AGG | - | tig0024490:76477-76496 | None:intergenic | 30.0% | |
| GTAACAGTGAATTGAATTGA+TGG | + | tig0024490:76532-76551 | Msa1417560:intron | 30.0% | |
| AACAGTGAATTGAATTGATG+GGG | + | tig0024490:76534-76553 | Msa1417560:intron | 30.0% | |
| GCTAACTCAATATGATATTG+AGG | + | tig0024490:76571-76590 | Msa1417560:CDS | 30.0% | |
| AATCATTTATGTATGTCCTG+TGG | + | tig0024490:76611-76630 | Msa1417560:intron | 30.0% | |
| GAAGAAGAAAAAGATAAGGA+AGG | - | tig0024490:76638-76657 | None:intergenic | 30.0% | |
| ATTTGATTCAGTTTCTCAAC+AGG | + | tig0024490:76702-76721 | Msa1417560:intron | 30.0% | |
| ! | AAATGGTATATTTGGAACAG+TGG | - | tig0024490:77000-77019 | None:intergenic | 30.0% |
| AACATTAAGCAATCAAAGCA+AGG | - | tig0024490:77051-77070 | None:intergenic | 30.0% | |
| ! | AAAACGTACGTTCAACTTTT+TGG | - | tig0024490:77271-77290 | None:intergenic | 30.0% |
| GTATATGATTCAGATCGTAA+TGG | + | tig0024490:77540-77559 | Msa1417560:CDS | 30.0% | |
| !! | GAAGTTCTAAAAGATTTGTC+TGG | + | tig0024490:77588-77607 | Msa1417560:CDS | 30.0% |
| AGCAAAGTAAGTTTCCATTA+AGG | + | tig0024490:77710-77729 | Msa1417560:intron | 30.0% | |
| TAACAATTGATGCACCTTAA+TGG | - | tig0024490:77727-77746 | None:intergenic | 30.0% | |
| ! | TTACTGTTCTTTGATTTCTC+AGG | + | tig0024490:77968-77987 | Msa1417560:intron | 30.0% |
| GACATTGGATGATTTCATTA+AGG | + | tig0024490:78043-78062 | Msa1417560:CDS | 30.0% | |
| TTAAATTTGTCACAGGTTCT+TGG | + | tig0024490:78230-78249 | Msa1417560:intron | 30.0% | |
| ACAAGAATCCCAAGAAAAAA+GGG | - | tig0024490:78411-78430 | None:intergenic | 30.0% | |
| TACAAGAATCCCAAGAAAAA+AGG | - | tig0024490:78412-78431 | None:intergenic | 30.0% | |
| CAAGGTTATAAAATATGTCC+AGG | - | tig0024490:78511-78530 | None:intergenic | 30.0% | |
| GGTATTTATTACTACTCAGG+AGG | + | tig0024490:76223-76242 | Msa1417560:five_prime_UTR | 35.0% | |
| TGACATGAAAGTAGTACGTT+TGG | + | tig0024490:76258-76277 | Msa1417560:intron | 35.0% | |
| GAGATGAGAATTGAGATAGT+TGG | - | tig0024490:76388-76407 | None:intergenic | 35.0% | |
| TCATCTCCTCATATCATATC+AGG | + | tig0024490:76401-76420 | Msa1417560:five_prime_UTR | 35.0% | |
| CAACTTGACAGAAATGCTAA+AGG | + | tig0024490:76754-76773 | Msa1417560:CDS | 35.0% | |
| ! | AGTGGATTCATAACAAACTC+AGG | - | tig0024490:76811-76830 | None:intergenic | 35.0% |
| TGTTATGAATCCACTTTCTC+AGG | + | tig0024490:76816-76835 | Msa1417560:CDS | 35.0% | |
| TGATATGATACCTGAGAAAG+TGG | - | tig0024490:76829-76848 | None:intergenic | 35.0% | |
| AGAAGATGTCCACTATAAGT+AGG | + | tig0024490:77074-77093 | Msa1417560:intron | 35.0% | |
| GAAGATGTCCACTATAAGTA+GGG | + | tig0024490:77075-77094 | Msa1417560:intron | 35.0% | |
| GTTTGTGTACTTATTTGCAG+AGG | + | tig0024490:77165-77184 | Msa1417560:intron | 35.0% | |
| TCTGCATTTAGTACAAAAGC+TGG | + | tig0024490:77239-77258 | Msa1417560:CDS | 35.0% | |
| ! | TGATTCAGATCGTAATGGAA+AGG | + | tig0024490:77545-77564 | Msa1417560:CDS | 35.0% |
| GGTGTCTTTCAAAGACATAT+TGG | + | tig0024490:77566-77585 | Msa1417560:CDS | 35.0% | |
| ! | TTTGATTTCTCAGGAAGTCT+TGG | + | tig0024490:77977-77996 | Msa1417560:intron | 35.0% |
| TTGATTTCTCAGGAAGTCTT+GGG | + | tig0024490:77978-77997 | Msa1417560:intron | 35.0% | |
| ! | AAAAGACTGCTACTTGACAT+TGG | + | tig0024490:78028-78047 | Msa1417560:CDS | 35.0% |
| !! | CATCCATTTTTACTCCAGAA+TGG | - | tig0024490:78256-78275 | None:intergenic | 35.0% |
| TTTCATCCTTCAAGAGAACA+GGG | - | tig0024490:78316-78335 | None:intergenic | 35.0% | |
| ATTTCATCCTTCAAGAGAAC+AGG | - | tig0024490:78317-78336 | None:intergenic | 35.0% | |
| CAAGAATCCCAAGAAAAAAG+GGG | - | tig0024490:78410-78429 | None:intergenic | 35.0% | |
| CTGACTCAAGTTTGAATTCA+GGG | - | tig0024490:78541-78560 | None:intergenic | 35.0% | |
| ! | ACTGACTCAAGTTTGAATTC+AGG | - | tig0024490:78542-78561 | None:intergenic | 35.0% |
| ! | TTCAGCTTGTTCCACTAAAT+TGG | - | tig0024490:78583-78602 | None:intergenic | 35.0% |
| AGCTGAAATGATTTCAATGC+TGG | + | tig0024490:78596-78615 | Msa1417560:three_prime_UTR | 35.0% | |
| ! | TTAGGAAGGAAGGGACTTTT+TGG | - | tig0024490:76342-76361 | None:intergenic | 40.0% |
| AAAAAGTCCCTTCCTTCCTA+AGG | + | tig0024490:76341-76360 | Msa1417560:intron | 40.0% | |
| AAAAGATAAGGAAGGACCAC+AGG | - | tig0024490:76630-76649 | None:intergenic | 40.0% | |
| TATCCTAGCCCTACTTATAG+TGG | - | tig0024490:77086-77105 | None:intergenic | 40.0% | |
| TTTGCAGAGGTTACTCAAGA+TGG | + | tig0024490:77178-77197 | Msa1417560:intron | 40.0% | |
| AGGTTACTCAAGATGGTTGA+TGG | + | tig0024490:77185-77204 | Msa1417560:CDS | 40.0% | |
| CATGTCTGATGATCAAAGAG+AGG | + | tig0024490:77617-77636 | Msa1417560:CDS | 40.0% | |
| CGAATACAGCACAACTGAAA+AGG | - | tig0024490:77918-77937 | None:intergenic | 40.0% | |
| !! | TGGCCATTCTGGAGTAAAAA+TGG | + | tig0024490:78250-78269 | Msa1417560:CDS | 40.0% |
| AGTTTACCCTGTTCTCTTGA+AGG | + | tig0024490:78307-78326 | Msa1417560:three_prime_UTR | 40.0% | |
| !!! | ACAGTTGTCCCCTTTTTTCT+TGG | + | tig0024490:78399-78418 | Msa1417560:three_prime_UTR | 40.0% |
| !!! | CAGTTGTCCCCTTTTTTCTT+GGG | + | tig0024490:78400-78419 | Msa1417560:three_prime_UTR | 40.0% |
| ! | GATTAAGGCTTTTGCATTCC+TGG | + | tig0024490:78490-78509 | Msa1417560:three_prime_UTR | 40.0% |
| TGAATTCAGGGAACCAAACA+AGG | - | tig0024490:78529-78548 | None:intergenic | 40.0% | |
| TGTCCACTATAAGTAGGGCT+AGG | + | tig0024490:77080-77099 | Msa1417560:intron | 45.0% | |
| ! | CACAACTGAAAAGGTGTGTG+TGG | - | tig0024490:77909-77928 | None:intergenic | 45.0% |
| ATCCTGCTTCTTTCAGAACC+TGG | - | tig0024490:78004-78023 | None:intergenic | 45.0% | |
| TATCCCCATTGGAGCTGATT+TGG | + | tig0024490:78453-78472 | Msa1417560:three_prime_UTR | 45.0% | |
| CTACCAAATCAGCTCCAATG+GGG | - | tig0024490:78459-78478 | None:intergenic | 45.0% | |
| GCTACCAAATCAGCTCCAAT+GGG | - | tig0024490:78460-78479 | None:intergenic | 45.0% | |
| AGCTACCAAATCAGCTCCAA+TGG | - | tig0024490:78461-78480 | None:intergenic | 45.0% | |
| !! | TATATATATATAATATATAC+AGG | - | tig0024490:76312-76331 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTTTATGAAAA+TGG | - | tig0024490:77017-77036 | None:intergenic | 5.0% |
| GCAGTGTCCTTAGGAAGGAA+GGG | - | tig0024490:76351-76370 | None:intergenic | 50.0% | |
| TGCAGTGTCCTTAGGAAGGA+AGG | - | tig0024490:76352-76371 | None:intergenic | 50.0% | |
| TGAGTGCAGTGTCCTTAGGA+AGG | - | tig0024490:76356-76375 | None:intergenic | 50.0% | |
| AAGGTGAGTGCAGTGTCCTT+AGG | - | tig0024490:76360-76379 | None:intergenic | 50.0% | |
| TCACAGGTTCTTGGCCATTC+TGG | + | tig0024490:78239-78258 | Msa1417560:intron | 50.0% | |
| ATCAGCTCCAATGGGGATAG+TGG | - | tig0024490:78452-78471 | None:intergenic | 50.0% | |
| TTCTCAGGAAGTCTTGGGCC+AGG | + | tig0024490:77983-78002 | Msa1417560:intron | 55.0% | |
| !! | GGCCAGGTTCTGAAAGAAGC+AGG | + | tig0024490:77999-78018 | Msa1417560:CDS | 55.0% |
| CTTCCTGCCACTATCCCCAT+TGG | + | tig0024490:78442-78461 | Msa1417560:three_prime_UTR | 55.0% | |
| ! | GCTCCAATGGGGATAGTGGC+AGG | - | tig0024490:78448-78467 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024490 | gene | 76179 | 78641 | 76179 | ID=Msa1417560;Name=Msa1417560 |
| tig0024490 | mRNA | 76179 | 78641 | 76179 | ID=Msa1417560-mRNA-1;Parent=Msa1417560;Name=Msa1417560-mRNA-1;_AED=0.17;_eAED=0.17;_QI=178|0.85|0.87|1|0.71|0.75|8|346|168 |
| tig0024490 | exon | 76179 | 76267 | 76179 | ID=Msa1417560-mRNA-1:exon:23496;Parent=Msa1417560-mRNA-1 |
| tig0024490 | exon | 76346 | 76422 | 76346 | ID=Msa1417560-mRNA-1:exon:23497;Parent=Msa1417560-mRNA-1 |
| tig0024490 | exon | 76539 | 76620 | 76539 | ID=Msa1417560-mRNA-1:exon:23498;Parent=Msa1417560-mRNA-1 |
| tig0024490 | exon | 76713 | 76837 | 76713 | ID=Msa1417560-mRNA-1:exon:23499;Parent=Msa1417560-mRNA-1 |
| tig0024490 | exon | 77185 | 77260 | 77185 | ID=Msa1417560-mRNA-1:exon:23500;Parent=Msa1417560-mRNA-1 |
| tig0024490 | exon | 77529 | 77638 | 77529 | ID=Msa1417560-mRNA-1:exon:23501;Parent=Msa1417560-mRNA-1 |
| tig0024490 | exon | 77990 | 78064 | 77990 | ID=Msa1417560-mRNA-1:exon:23502;Parent=Msa1417560-mRNA-1 |
| tig0024490 | exon | 78245 | 78641 | 78245 | ID=Msa1417560-mRNA-1:exon:23503;Parent=Msa1417560-mRNA-1 |
| tig0024490 | five_prime_UTR | 76179 | 76267 | 76179 | ID=Msa1417560-mRNA-1:five_prime_utr;Parent=Msa1417560-mRNA-1 |
| tig0024490 | five_prime_UTR | 76346 | 76422 | 76346 | ID=Msa1417560-mRNA-1:five_prime_utr;Parent=Msa1417560-mRNA-1 |
| tig0024490 | five_prime_UTR | 76539 | 76550 | 76539 | ID=Msa1417560-mRNA-1:five_prime_utr;Parent=Msa1417560-mRNA-1 |
| tig0024490 | CDS | 76551 | 76620 | 76551 | ID=Msa1417560-mRNA-1:cds;Parent=Msa1417560-mRNA-1 |
| tig0024490 | CDS | 76713 | 76837 | 76713 | ID=Msa1417560-mRNA-1:cds;Parent=Msa1417560-mRNA-1 |
| tig0024490 | CDS | 77185 | 77260 | 77185 | ID=Msa1417560-mRNA-1:cds;Parent=Msa1417560-mRNA-1 |
| tig0024490 | CDS | 77529 | 77638 | 77529 | ID=Msa1417560-mRNA-1:cds;Parent=Msa1417560-mRNA-1 |
| tig0024490 | CDS | 77990 | 78064 | 77990 | ID=Msa1417560-mRNA-1:cds;Parent=Msa1417560-mRNA-1 |
| tig0024490 | CDS | 78245 | 78295 | 78245 | ID=Msa1417560-mRNA-1:cds;Parent=Msa1417560-mRNA-1 |
| tig0024490 | three_prime_UTR | 78296 | 78641 | 78296 | ID=Msa1417560-mRNA-1:three_prime_utr;Parent=Msa1417560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
