AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0220460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220460 MtrunA17_Chr2g0324161 96.486 313 8 1 301 610 1 313 0.0 615
Msa0220460 MtrunA17_Chr2g0324161 85.942 313 32 1 1 301 1 313 0.0 552
Msa0220460 MtrunA17_Chr2g0324141 91.374 313 15 1 1 301 1 313 0.0 586
Msa0220460 MtrunA17_Chr2g0324141 89.137 313 31 1 301 610 1 313 0.0 568
Msa0220460 MtrunA17_Chr4g0047681 64.423 312 98 2 1 300 1 311 2.30e-142 415
Msa0220460 MtrunA17_Chr4g0047681 62.821 312 112 2 301 609 1 311 5.83e-138 404
Msa0220460 MtrunA17_Chr4g0047701 60.577 312 110 2 1 300 1 311 2.60e-136 400
Msa0220460 MtrunA17_Chr4g0047701 59.615 312 122 2 301 609 1 311 4.95e-134 394
Msa0220460 MtrunA17_Chr7g0272481 38.125 320 183 8 301 607 1 318 8.02e-66 218
Msa0220460 MtrunA17_Chr7g0272481 36.137 321 179 8 1 298 1 318 2.48e-58 198
Msa0220460 MtrunA17_Chr7g0272531 36.747 332 195 8 289 607 19 348 2.44e-64 215
Msa0220460 MtrunA17_Chr7g0272531 36.449 321 178 8 1 298 31 348 4.24e-58 198
Msa0220460 MtrunA17_Chr7g0269471 37.107 318 187 7 301 607 1 316 7.35e-64 213
Msa0220460 MtrunA17_Chr7g0269471 34.891 321 181 9 1 298 1 316 7.70e-57 194
Msa0220460 MtrunA17_Chr7g0272431 37.188 320 186 7 301 607 1 318 2.77e-63 211
Msa0220460 MtrunA17_Chr7g0272431 35.312 320 183 7 1 298 1 318 8.23e-56 191
Msa0220460 MtrunA17_Chr7g0272181 37.500 320 185 8 301 607 1 318 3.04e-63 211
Msa0220460 MtrunA17_Chr7g0272181 36.760 321 177 8 1 298 1 318 1.38e-57 196
Msa0220460 MtrunA17_Chr7g0272451 37.736 318 184 8 301 607 1 315 6.72e-63 210
Msa0220460 MtrunA17_Chr7g0272451 34.688 320 182 8 1 298 1 315 8.48e-56 191
Msa0220460 MtrunA17_Chr7g0272501 36.562 320 188 8 301 607 1 318 9.21e-62 207
Msa0220460 MtrunA17_Chr7g0272501 35.514 321 181 8 1 298 1 318 1.58e-56 193
Msa0220460 MtrunA17_Chr7g0272171 36.250 320 189 8 301 607 1 318 2.39e-61 206
Msa0220460 MtrunA17_Chr7g0272171 36.137 321 179 9 1 298 1 318 2.68e-56 192
Msa0220460 MtrunA17_Chr8g0372491 34.579 321 195 7 301 610 3 319 4.66e-60 202
Msa0220460 MtrunA17_Chr8g0372491 33.230 322 191 7 1 302 3 320 1.59e-55 191
Msa0220460 MtrunA17_Chr4g0000111 36.923 325 183 10 301 607 1 321 5.95e-60 202
Msa0220460 MtrunA17_Chr4g0000111 35.385 325 179 9 1 298 1 321 2.69e-54 187
Msa0220460 MtrunA17_Chr7g0272441 35.312 320 192 7 301 607 1 318 5.53e-59 200
Msa0220460 MtrunA17_Chr7g0272441 33.333 321 188 7 1 298 1 318 3.94e-52 181
Msa0220460 MtrunA17_Chr4g0067581 34.985 323 195 8 298 607 34 354 1.13e-56 195
Msa0220460 MtrunA17_Chr4g0067581 32.399 321 191 7 1 298 37 354 1.44e-52 184
Msa0220460 MtrunA17_Chr7g0272471 41.026 156 88 2 301 452 1 156 1.50e-35 131
Msa0220460 MtrunA17_Chr7g0272471 37.179 156 82 2 1 140 1 156 1.22e-29 114
Msa0220460 MtrunA17_Chr1g0192291 43.411 129 72 1 301 429 1 128 7.08e-33 124
Msa0220460 MtrunA17_Chr1g0192291 41.860 129 62 2 1 117 1 128 7.18e-28 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220460 AT4G02340.1 36.478 318 188 7 301 607 1 315 3.16e-63 212
Msa0220460 AT4G02340.1 34.796 319 183 8 1 298 1 315 1.57e-55 191
Msa0220460 AT3G05600.1 35.802 324 190 9 301 607 1 323 8.49e-57 195
Msa0220460 AT3G05600.1 34.347 329 189 8 1 303 1 328 1.50e-52 183
Msa0220460 AT3G51000.1 35.110 319 193 7 303 609 4 320 4.55e-56 192
Msa0220460 AT3G51000.1 33.542 319 189 7 3 300 4 320 1.34e-51 181
Msa0220460 AT4G15960.1 33.939 330 196 10 297 607 47 373 1.23e-53 187
Msa0220460 AT4G15960.1 33.739 329 181 11 1 298 51 373 4.04e-52 184
Msa0220460 AT2G26740.1 30.938 320 205 7 304 607 1 320 1.18e-44 162
Msa0220460 AT2G26740.1 29.907 321 198 7 4 298 1 320 8.44e-43 157
Msa0220460 AT4G15955.3 31.875 320 175 10 305 605 6 301 2.73e-44 160
Msa0220460 AT4G15955.3 30.960 323 165 10 5 296 6 301 1.93e-42 155
Msa0220460 AT2G26750.1 30.284 317 206 7 304 605 1 317 9.39e-43 156
Msa0220460 AT2G26750.1 28.302 318 202 7 4 296 1 317 1.36e-40 150
Msa0220460 AT3G05600.2 36.066 244 143 7 301 532 1 243 1.62e-42 153
Msa0220460 AT3G05600.2 34.016 244 139 6 1 223 1 243 2.70e-38 142
Msa0220460 AT4G15955.2 36.000 175 98 5 303 463 4 178 2.38e-28 112
Msa0220460 AT4G15955.2 34.857 175 88 5 3 151 4 178 1.58e-26 107
Msa0220460 AT4G15955.1 36.364 165 91 5 305 455 6 170 8.96e-26 104
Msa0220460 AT4G15955.1 35.152 165 81 5 5 143 6 170 5.23e-24 99.8

Find 170 sgRNAs with CRISPR-Local

Find 445 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATATGTAGTTTCCAATTT+TGG 0.134016 2_1:+68842097 None:intergenic
TTCTATCAGGCTATCATTAT+TGG 0.155003 2_1:-68843555 Msa0220460:intron
CTCCAAGTATACCATATTTC+TGG 0.167335 2_1:+68844285 None:intergenic
CTCCATGTATACCATATTTC+TGG 0.204004 2_1:+68840061 None:intergenic
GGCATTCCCTTCATACTTCC+TGG 0.245208 2_1:-68843456 Msa0220460:CDS
TACATGGATTTCCAGAAATA+TGG 0.250760 2_1:-68840072 Msa0220460:CDS
TTGATGTTAAATCTGTTATA+AGG 0.257245 2_1:-68838736 Msa0220460:CDS
TTGATGTTAAATCAGTTATA+AGG 0.281687 2_1:-68843148 Msa0220460:CDS
TGCACAAAATGGCTTCCTTC+TGG 0.282105 2_1:+68842073 None:intergenic
TGCATGGATTCCCAGAAATA+TGG 0.287117 2_1:-68844296 Msa0220460:CDS
TGCACAAAATGACTTCCTTC+TGG 0.292605 2_1:+68838046 None:intergenic
GGAATTGTTCATGCACAAAA+TGG 0.293610 2_1:+68842062 None:intergenic
TGGCTTCAGATTTGCATTGC+AGG 0.296497 2_1:-68838576 Msa0220460:CDS
TGGCTTCAGATTTGCATTGC+AGG 0.296497 2_1:-68842979 Msa0220460:CDS
GCCGGAAAAGGCAACTTTAA+TGG 0.297102 2_1:-68844175 Msa0220460:CDS
GACTATTGTTTCAACTTTCC+TGG 0.300400 2_1:-68838136 Msa0220460:CDS
GACTACTGTTTCAACTTTCC+TGG 0.312189 2_1:-68842163 Msa0220460:CDS
GAGTTGTTGAAATTACTTAT+TGG 0.316638 2_1:+68837835 None:intergenic
CATTTACTTTAGGATCAATT+AGG 0.317017 2_1:+68838188 None:intergenic
AGTGCAGGAACATTTACTTT+AGG 0.323205 2_1:+68838178 None:intergenic
TGTTCCTGCACTGCTGATAA+TGG 0.329656 2_1:-68838167 Msa0220460:CDS
CTAGTAATGTAGAAGCCTTT+TGG 0.342223 2_1:+68838984 None:intergenic
CATGGTGGGAGGGGAGTAGA+TGG 0.344585 2_1:+68838647 None:intergenic
ATGAGCTTGTTCACTTCCTC+TGG 0.363781 2_1:+68838013 None:intergenic
ATAAGCTTGTTCACTTCCTC+TGG 0.367368 2_1:+68842040 None:intergenic
GTAGCTTCTGTCATAACTTT+AGG 0.369339 2_1:-68843477 Msa0220460:CDS
GGGAGGGCAGAAGCAGATTT+CGG 0.376983 2_1:-68843176 Msa0220460:CDS
AGTGCAGGAACATTGACTTT+AGG 0.378073 2_1:+68842205 None:intergenic
GTGTGTGTGTTGGAGTTATA+TGG 0.378329 2_1:+68844515 None:intergenic
CTAGTGATGTAGAAGCCTTT+TGG 0.380113 2_1:+68843405 None:intergenic
TCTTGATTATCACCTGCTAC+TGG 0.385504 2_1:+68843092 None:intergenic
ATCATTATTGGTAAGGACTT+TGG 0.388030 2_1:-68843543 Msa0220460:CDS
GTGGCTTCTCTCATAACTTT+AGG 0.388617 2_1:-68839056 Msa0220460:CDS
TTGTAATTTGATTACCTGTA+TGG 0.393462 2_1:+68842954 None:intergenic
TTCTATCAGGCATTCCTCAT+TGG 0.398568 2_1:-68839134 Msa0220460:intron
CATGGTGGGAGGGGAGTAGA+TGG 0.401906 2_1:+68843050 None:intergenic
GGGAGGGCAGAAGCAGATTT+CGG 0.403797 2_1:-68838764 Msa0220460:CDS
GGCATTCCTTTCATGAATCC+TGG 0.405213 2_1:-68839035 Msa0220460:CDS
AAGCTCCATGTAGCTGAGAT+TGG 0.413032 2_1:-68840203 Msa0220460:CDS
CAAAAGGCTTCTACATTACT+AGG 0.419163 2_1:-68838983 Msa0220460:CDS
TGTTCCTGCACTGCTGATCA+TGG 0.421663 2_1:-68842194 Msa0220460:CDS
GCCTTTGATTCTAGAGGCTA+TGG 0.425274 2_1:-68839995 Msa0220460:CDS
TATGATTGTGATTGTGGTTG+TGG 0.426626 2_1:-68837964 Msa0220460:intron
TCCCAGAAATATGGTATACT+TGG 0.432297 2_1:-68844287 Msa0220460:CDS
CATTTGCAACAGCAATCATT+TGG 0.438176 2_1:+68840035 None:intergenic
ATATAAATGATTTCTAAGTC+TGG 0.443671 2_1:+68838070 None:intergenic
CATTGACTTTAGGATCAGTT+AGG 0.443833 2_1:+68842215 None:intergenic
TTCTGATCATCCAGCTGTGC+CGG 0.445596 2_1:-68844193 Msa0220460:CDS
TGAGACTTTGATTACCTGTA+TGG 0.446680 2_1:+68838551 None:intergenic
ATGATTGCTGTTGCAAATGC+TGG 0.447159 2_1:-68844255 Msa0220460:CDS
TCCAAGTATACCATATTTCT+GGG 0.447415 2_1:+68844286 None:intergenic
ACACATGTAGTAAATGAGTT+AGG 0.453226 2_1:-68844580 Msa0220460:five_prime_UTR
ATGATTGCTGTTGCAAATGC+TGG 0.455512 2_1:-68840031 Msa0220460:CDS
AGTAAACTAATTCAGGAGCC+TGG 0.459230 2_1:-68838785 Msa0220460:intron
AGTAAACTAATTCAGGAGCC+TGG 0.459230 2_1:-68843197 Msa0220460:intron
CAAAACCATCTTCTTCCAAA+AGG 0.462042 2_1:-68843420 Msa0220460:CDS
ATGTTCTCCATCTTTGATGA+AGG 0.463585 2_1:+68844483 None:intergenic
TTGCATTGCAGGTTCCATAC+AGG 0.463920 2_1:-68838565 Msa0220460:intron
TTGCATTGCAGGTTCCATAC+AGG 0.463920 2_1:-68842968 Msa0220460:intron
ATCAAACGCTTTGTTTGTCA+AGG 0.468105 2_1:+68842008 None:intergenic
TTGAAATTACTTATTGGAAA+GGG 0.470763 2_1:+68837841 None:intergenic
TCATCCAGCTGTGCCGGAAA+AGG 0.471982 2_1:-68844187 Msa0220460:CDS
CATGTAGCTGAGATTGGAAC+TGG 0.474162 2_1:-68840197 Msa0220460:intron
GCCAGTAGCAAGTGAAATCA+TGG 0.476234 2_1:-68838681 Msa0220460:CDS
AAAAGTGAGGTCCCAGTAGC+AGG 0.478456 2_1:-68843104 Msa0220460:CDS
CATGTAGCTGAGATCGGAAC+TGG 0.478836 2_1:-68844423 Msa0220460:intron
CTTGATTATCACCTGCTACT+GGG 0.479786 2_1:+68843093 None:intergenic
TCACTTCTACTTGACTGTGT+TGG 0.480882 2_1:+68840234 None:intergenic
GTTCCTGCACTGCTGATAAT+GGG 0.482974 2_1:-68838166 Msa0220460:CDS
AAATCTGCTTCTGCCCTCCC+AGG 0.483719 2_1:+68843179 None:intergenic
TCAGAGAACCATGGTGGGAG+GGG 0.492353 2_1:+68838638 None:intergenic
AGTAATTTCAACAACTCTGT+AGG 0.493363 2_1:-68837829 Msa0220460:three_prime_UTR
TCACCCATGATCAGCAGTGC+AGG 0.494245 2_1:+68842190 None:intergenic
CAGTTCCAATCTCAGCTACA+TGG 0.495798 2_1:+68840198 None:intergenic
CGGATGTAGTCTTCCATGCC+AGG 0.497187 2_1:+68838118 None:intergenic
CGAATGTAGTCTTCCATGCC+AGG 0.497187 2_1:+68842145 None:intergenic
CAGTTCCGATCTCAGCTACA+TGG 0.498094 2_1:+68844424 None:intergenic
CAGAACCATCTTCTCCCAAA+AGG 0.498875 2_1:-68838999 Msa0220460:CDS
ACAGCAGCTACAAGATATGC+TGG 0.499367 2_1:+68843513 None:intergenic
TCACTTCCACATGACTGTGC+TGG 0.499866 2_1:+68844460 None:intergenic
TCCATGATTTCACTTGCTAC+TGG 0.503396 2_1:+68838680 None:intergenic
TCACCCATTATCAGCAGTGC+AGG 0.503679 2_1:+68838163 None:intergenic
ACTTCACCCTTCATCAAAGA+TGG 0.504149 2_1:-68844490 Msa0220460:exon
TCAGAAAACCATGGTGGGAG+GGG 0.505926 2_1:+68843041 None:intergenic
TTCCTCATTGGTAAGGACTC+TGG 0.506255 2_1:-68839122 Msa0220460:CDS
TTCTGGATTGCAGAAGGACC+AGG 0.507304 2_1:+68839017 None:intergenic
TTGTTTCAACTTTCCTGGCA+TGG 0.510500 2_1:-68838131 Msa0220460:CDS
CTGTTTCAACTTTCCTGGCA+TGG 0.511059 2_1:-68842158 Msa0220460:CDS
AGAAGGACCAGGAAGTATGA+AGG 0.515229 2_1:+68843449 None:intergenic
CAAAAGGCTTCTACATCACT+AGG 0.515709 2_1:-68843404 Msa0220460:CDS
TTGTCCAGGTGAAAAGGTAG+TGG 0.519750 2_1:-68844325 Msa0220460:intron
TCAGGCTATCATTATTGGTA+AGG 0.521661 2_1:-68843550 Msa0220460:intron
AAATCTGCTTCTGCCCTCCC+AGG 0.524619 2_1:+68838767 None:intergenic
GTTGAAATTACTTATTGGAA+AGG 0.526398 2_1:+68837840 None:intergenic
CTCAGAAAACCATGGTGGGA+GGG 0.528522 2_1:+68843040 None:intergenic
AGGTGATAATCAAGAAATCA+TGG 0.529207 2_1:-68843084 Msa0220460:CDS
CTTCTACATCACTAGGTGGC+AGG 0.532713 2_1:-68843397 Msa0220460:intron
TTCCAGAAATATGGTATACA+TGG 0.532909 2_1:-68840063 Msa0220460:CDS
CTCAGAGAACCATGGTGGGA+GGG 0.535598 2_1:+68838637 None:intergenic
TCCATAGCCTCTAGAATCAA+AGG 0.535802 2_1:+68839994 None:intergenic
AAGCTCATCATAGAATTCCT+TGG 0.536125 2_1:-68837998 Msa0220460:CDS
CTTCTACATTACTAGGTGGC+AGG 0.538576 2_1:-68838976 Msa0220460:intron
TCAGGCATTCCTCATTGGTA+AGG 0.545772 2_1:-68839129 Msa0220460:intron
ATCATATACTTTGTTTACCA+AGG 0.547195 2_1:+68837981 None:intergenic
AAAGTATATGATTGTGATTG+TGG 0.548979 2_1:-68837970 Msa0220460:exon
GTAAACTAATTCAGGAGCCT+GGG 0.554497 2_1:-68838784 Msa0220460:intron
GTAAACTAATTCAGGAGCCT+GGG 0.554497 2_1:-68843196 Msa0220460:intron
TCCATAGCCTCTAAAATCAA+AGG 0.557457 2_1:+68844218 None:intergenic
AAGCTCCATGTAGCTGAGAT+CGG 0.562273 2_1:-68844429 Msa0220460:CDS
GAAATCATTTATATTCCAGA+AGG 0.563505 2_1:-68838061 Msa0220460:CDS
TGAGCTTGTTCACTTCCTCT+GGG 0.566276 2_1:+68838014 None:intergenic
AGGTCTCTCACAGTGGAAAG+TGG 0.566949 2_1:-68838211 Msa0220460:CDS
GAAGGACCAGGAAGTATGAA+GGG 0.568631 2_1:+68843450 None:intergenic
GCACAGTCATGTGGAAGTGA+AGG 0.569104 2_1:-68844457 Msa0220460:CDS
GTTCCTGCACTGCTGATCAT+GGG 0.571021 2_1:-68842193 Msa0220460:CDS
GGCATGGAAGACTACATTCG+AGG 0.574624 2_1:-68842142 Msa0220460:CDS
TAAGCTTGTTCACTTCCTCT+GGG 0.577933 2_1:+68842041 None:intergenic
TGGAAGACTACATTCGAGGT+GGG 0.578156 2_1:-68842138 Msa0220460:CDS
GGTGAAGTGAGTGTGTGTGT+TGG 0.581771 2_1:+68844505 None:intergenic
AACTAATTCAGGAGCCTGGG+AGG 0.583125 2_1:-68838781 Msa0220460:intron
AACTAATTCAGGAGCCTGGG+AGG 0.583125 2_1:-68843193 Msa0220460:intron
GCTATAGCCTTTGATTCTAG+AGG 0.584464 2_1:-68840001 Msa0220460:CDS
TGGAAGACTACATCCGAAGT+GGG 0.590452 2_1:-68838111 Msa0220460:CDS
GGACCTTGTTGATGAAGTCA+AGG 0.590593 2_1:-68839930 Msa0220460:CDS
AGCTACAAGATATGCTGGGA+TGG 0.592615 2_1:+68843518 None:intergenic
GAACATCCAGCACAGTCATG+TGG 0.595337 2_1:-68844466 Msa0220460:CDS
AGATGGTTCTGGATTGCAGA+AGG 0.595396 2_1:+68839011 None:intergenic
CACAGTCATGTGGAAGTGAA+GGG 0.603137 2_1:-68844456 Msa0220460:CDS
GCTCAGAAAACCATGGTGGG+AGG 0.603969 2_1:+68843039 None:intergenic
CCTCAGAGAACCATGGTGGG+AGG 0.604144 2_1:+68838636 None:intergenic
GAAGGACCAGGATTCATGAA+AGG 0.609615 2_1:+68839029 None:intergenic
ACACAGTCAAGTAGAAGTGA+AGG 0.610907 2_1:-68840231 Msa0220460:CDS
ATGGTGGGAGGGGAGTAGAT+GGG 0.615799 2_1:+68838648 None:intergenic
TGTTCTCCATCTTTGATGAA+GGG 0.616429 2_1:+68844484 None:intergenic
GAAACTACATATATTCCAGA+AGG 0.616954 2_1:-68842088 Msa0220460:CDS
AGACTACATTCGAGGTGGGG+TGG 0.618387 2_1:-68842134 Msa0220460:CDS
GGAAGACTACATTCGAGGTG+GGG 0.619566 2_1:-68842137 Msa0220460:CDS
CTTGCTCAGAAAACCATGGT+GGG 0.619613 2_1:+68843036 None:intergenic
ATGGAAGACTACATCCGAAG+TGG 0.631732 2_1:-68838112 Msa0220460:CDS
TAAAAGAAGAAAGATAACAA+AGG 0.633476 2_1:+68844539 None:intergenic
CCTCCCACCATGGTTCTCTG+AGG 0.633901 2_1:-68838636 Msa0220460:CDS
ACTAATTCAGGAGCCTGGGA+GGG 0.638834 2_1:-68838780 Msa0220460:intron
ACTAATTCAGGAGCCTGGGA+GGG 0.638834 2_1:-68843192 Msa0220460:intron
CAGCAGCTACAAGATATGCT+GGG 0.639715 2_1:+68843514 None:intergenic
CATCTACTCCCCTCCCACCA+TGG 0.640005 2_1:-68838646 Msa0220460:CDS
ATGGAAGACTACATTCGAGG+TGG 0.641078 2_1:-68842139 Msa0220460:CDS
CTTCCTCAGAGAACCATGGT+GGG 0.642585 2_1:+68838633 None:intergenic
CATCTACTCCCCTCCCACCA+TGG 0.645538 2_1:-68843049 Msa0220460:CDS
AGGTACAAGATTTGCTACAA+AGG 0.649014 2_1:+68839097 None:intergenic
CACCAGAGTCCTTACCAATG+AGG 0.649750 2_1:+68839120 None:intergenic
GATCCTTGACTTCATCAACA+AGG 0.650778 2_1:+68839927 None:intergenic
GATCCTTGACTTCATCAACA+AGG 0.650778 2_1:+68844151 None:intergenic
TAAAATCAAAGGCAATAGCA+CGG 0.651343 2_1:+68844229 None:intergenic
CACAGTCAAGTAGAAGTGAA+GGG 0.661057 2_1:-68840230 Msa0220460:CDS
TAGAATCAAAGGCTATAGCA+CGG 0.665049 2_1:+68840005 None:intergenic
AGACTACATCCGAAGTGGGG+CGG 0.665888 2_1:-68838107 Msa0220460:CDS
TAACTGATTTAACATCAAAG+CGG 0.669179 2_1:+68843153 None:intergenic
AAGTCTTCCTCAGAGAACCA+TGG 0.688812 2_1:+68838629 None:intergenic
AGGTCTCTCACAGTGGAAAG+CGG 0.691986 2_1:-68842238 Msa0220460:CDS
TCTTCCTCAGAGAACCATGG+TGG 0.694615 2_1:+68838632 None:intergenic
GGAAGACTACATCCGAAGTG+GGG 0.697396 2_1:-68838110 Msa0220460:CDS
AGATACATTAGGTATCAACA+AGG 0.697682 2_1:-68839900 Msa0220460:intron
TCTTGCTCAGAAAACCATGG+TGG 0.699941 2_1:+68843035 None:intergenic
AAGTCTTGCTCAGAAAACCA+TGG 0.700006 2_1:+68843032 None:intergenic
TCCACACAGGTCTCTCACAG+TGG 0.707979 2_1:-68838218 Msa0220460:intron
TCCACACAGGTCTCTCACAG+TGG 0.707979 2_1:-68842245 Msa0220460:intron
AAGGCTTCTACATTACTAGG+TGG 0.741389 2_1:-68838980 Msa0220460:CDS
AAGGCTTCTACATCACTAGG+TGG 0.743685 2_1:-68843401 Msa0220460:CDS
TGTGCATGAACAATTCCCAG+AGG 0.744075 2_1:-68838029 Msa0220460:CDS
TGTGCATGAACAATTCCCAG+AGG 0.744075 2_1:-68842056 Msa0220460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAATCTTTTAGTTTA+TGG + chr2_1:68838474-68838493 None:intergenic 10.0%
!!! AACTAAAAGATTTTTTTTTT+TGG - chr2_1:68838476-68838495 Msa0220460:intron 10.0%
!!! TTTTCAATTCTTTTAATTTA+TGG + chr2_1:68838506-68838525 None:intergenic 10.0%
!! ACAAAATATAATAATTGTAA+TGG - chr2_1:68839675-68839694 Msa0220460:intron 10.0%
!! AGATAAGTATATTTAATAAA+TGG + chr2_1:68841360-68841379 None:intergenic 10.0%
!!! CAAGAATATTTTTTTATATA+AGG + chr2_1:68842233-68842252 None:intergenic 10.0%
!! ACAAAAATATCTTTCATTAA+TGG - chr2_1:68838440-68838459 Msa0220460:intron 15.0%
!! ATAGAAGATAAATATGATTA+TGG + chr2_1:68839034-68839053 None:intergenic 15.0%
!!! TTTTTGCTTTTATTTAAGTT+CGG - chr2_1:68839141-68839160 Msa0220460:intron 15.0%
!! ATTCAACTTAAAATCATAAT+TGG - chr2_1:68839460-68839479 Msa0220460:intron 15.0%
!! TTCTATTCCAAATAATTATA+AGG - chr2_1:68839705-68839724 Msa0220460:intron 15.0%
!!! TTTTGACTAAATAATCATTT+TGG - chr2_1:68839753-68839772 Msa0220460:intron 15.0%
!!! TTGTAATTTTGATTAATTTG+AGG + chr2_1:68839809-68839828 None:intergenic 15.0%
!!! ATTGACTTAATACAAAAAAA+AGG + chr2_1:68840053-68840072 None:intergenic 15.0%
!!! ACAATGAGATATTTTTTAAT+TGG - chr2_1:68840519-68840538 Msa0220460:intron 15.0%
!!! AAATGAGATAAAATTGTTTT+TGG - chr2_1:68840664-68840683 Msa0220460:intron 15.0%
!!! TAAAAGTTGTTTTAATTGAA+TGG - chr2_1:68841159-68841178 Msa0220460:intron 15.0%
!!! AATAGTTGTTTTTTTTTTGA+GGG - chr2_1:68841548-68841567 Msa0220460:intron 15.0%
!!! CTAAGAAGTTATTTATTTTT+AGG - chr2_1:68841806-68841825 Msa0220460:intron 15.0%
!!! GTTGTTTTGTAATAAAAAAA+GGG + chr2_1:68841884-68841903 None:intergenic 15.0%
!!! TGTTGTTTTGTAATAAAAAA+AGG + chr2_1:68841885-68841904 None:intergenic 15.0%
!! GTGATAAAATTTATTTATGT+TGG + chr2_1:68842567-68842586 None:intergenic 15.0%
!! CAAACTTAATATTTATAAGA+AGG + chr2_1:68843558-68843577 None:intergenic 15.0%
!! CTTCTTATAAATATTAAGTT+TGG - chr2_1:68843556-68843575 Msa0220460:intron 15.0%
!! TAAAAGAAGAAAGATAACAA+AGG + chr2_1:68837856-68837875 None:intergenic 20.0%
!! AAGAAAACTTTATGATATGA+GGG + chr2_1:68838003-68838022 None:intergenic 20.0%
!! AATATCTTTCATTAATGGTA+TGG - chr2_1:68838445-68838464 Msa0220460:intron 20.0%
!!! AGATAAAGTACTAAATAGTA+AGG - chr2_1:68838527-68838546 Msa0220460:intron 20.0%
!!! GATAAAGTACTAAATAGTAA+GGG - chr2_1:68838528-68838547 Msa0220460:intron 20.0%
!! TATTGTAAAGTGACATAATT+TGG - chr2_1:68838586-68838605 Msa0220460:CDS 20.0%
!! AAATTTCAATTACTTCTATC+AGG - chr2_1:68838824-68838843 Msa0220460:intron 20.0%
!! TTGATGTTAAATCAGTTATA+AGG - chr2_1:68839244-68839263 Msa0220460:intron 20.0%
!! TAAAATAGTCTGTAACTTTA+GGG - chr2_1:68840087-68840106 Msa0220460:CDS 20.0%
!!! ATATATGTAGTTTCCAATTT+TGG + chr2_1:68840298-68840317 None:intergenic 20.0%
!! ATCAAATTACTTATTGGAAT+GGG + chr2_1:68840455-68840474 None:intergenic 20.0%
!! TTCTTGATCAAATTACTTAT+TGG + chr2_1:68840461-68840480 None:intergenic 20.0%
!!! ATTTTATCTCATTTTAGACT+GGG + chr2_1:68840658-68840677 None:intergenic 20.0%
!!! AATTTTATCTCATTTTAGAC+TGG + chr2_1:68840659-68840678 None:intergenic 20.0%
!! GTAATAATATTGTACCAAAA+TGG - chr2_1:68840686-68840705 Msa0220460:intron 20.0%
!! AATTGATTGATTATAAAGAG+TGG + chr2_1:68841025-68841044 None:intergenic 20.0%
!! TCAGTTTAGTGTTTAATATA+AGG + chr2_1:68841106-68841125 None:intergenic 20.0%
!! TACACAAAAGAAAATCAAAA+CGG - chr2_1:68841329-68841348 Msa0220460:intron 20.0%
!! CTCAAAAAAAAAACAACTAT+TGG + chr2_1:68841549-68841568 None:intergenic 20.0%
!!! CAATAGTTGTTTTTTTTTTG+AGG - chr2_1:68841547-68841566 Msa0220460:intron 20.0%
!!! ATAGTTGTTTTTTTTTTGAG+GGG - chr2_1:68841549-68841568 Msa0220460:intron 20.0%
!!! AGAAACTAAGAATTGTTTTA+TGG - chr2_1:68842664-68842683 Msa0220460:intron 20.0%
!! AAATATTAGTAATGAGTTGT+TGG - chr2_1:68842731-68842750 Msa0220460:intron 20.0%
!!! AAAACAACACCTATAATTTT+GGG + chr2_1:68842952-68842971 None:intergenic 20.0%
!! ATAAGCACTTAAAATTGTAT+TGG + chr2_1:68843022-68843041 None:intergenic 20.0%
!!! TAATAAGACTCTTTTGATTA+AGG - chr2_1:68843190-68843209 Msa0220460:intron 20.0%
!! GAAGAAGAAATAAATGATTA+TGG + chr2_1:68843455-68843474 None:intergenic 20.0%
!! TTGATGTTAAATCTGTTATA+AGG - chr2_1:68843656-68843675 Msa0220460:intron 20.0%
!! CAACTTAAAATTCTCTTTAA+TGG - chr2_1:68843869-68843888 Msa0220460:intron 20.0%
!! TTAAAATTCTCTTTAATGGA+TGG - chr2_1:68843873-68843892 Msa0220460:intron 20.0%
!! ATATTCTGTAAACAATTTGA+TGG + chr2_1:68844061-68844080 None:intergenic 20.0%
!! ATATAAATGATTTCTAAGTC+TGG + chr2_1:68844325-68844344 None:intergenic 20.0%
!! TTGAAATTACTTATTGGAAA+GGG + chr2_1:68844554-68844573 None:intergenic 20.0%
! CAAGAAAACTTTATGATATG+AGG + chr2_1:68838004-68838023 None:intergenic 25.0%
!!! ACAATGTTTTTTATTTGTCC+AGG - chr2_1:68838053-68838072 Msa0220460:CDS 25.0%
!! AAGGATCTTTTAGATACATT+AGG - chr2_1:68838257-68838276 Msa0220460:intron 25.0%
! TGTTAGAGTGACATATAATT+TGG + chr2_1:68838357-68838376 None:intergenic 25.0%
! TAAATAGTAAGGGACATAAT+AGG - chr2_1:68838538-68838557 Msa0220460:intron 25.0%
! GAGTGACATATAATTTAGAA+TGG - chr2_1:68838626-68838645 Msa0220460:CDS 25.0%
!! TGACATATAATTTAGAATGG+AGG - chr2_1:68838629-68838648 Msa0220460:CDS 25.0%
!! GACATATAATTTAGAATGGA+GGG - chr2_1:68838630-68838649 Msa0220460:CDS 25.0%
! ATAGAAGAAAAAAATGTGAG+AGG - chr2_1:68838766-68838785 Msa0220460:CDS 25.0%
! TTGTTTATATCTAAGTCTAG+AGG + chr2_1:68839063-68839082 None:intergenic 25.0%
! ACTATTGAGTAAACTAATTC+AGG - chr2_1:68839188-68839207 Msa0220460:intron 25.0%
!! TAACTGATTTAACATCAAAG+CGG + chr2_1:68839242-68839261 None:intergenic 25.0%
!!! TATTCTCTTTTCTAAAAGTG+AGG - chr2_1:68839275-68839294 Msa0220460:intron 25.0%
! TTGTAATTTGATTACCTGTA+TGG + chr2_1:68839441-68839460 None:intergenic 25.0%
!!! GAAGTAGCCTTATAATTATT+TGG + chr2_1:68839715-68839734 None:intergenic 25.0%
!! TTTTGGTCCTTAAATGTATT+AGG - chr2_1:68839770-68839789 Msa0220460:intron 25.0%
! GAAAATGCCTAATACATTTA+AGG + chr2_1:68839780-68839799 None:intergenic 25.0%
!!! ATTTTGATTAATTTGAGGAC+CGG + chr2_1:68839804-68839823 None:intergenic 25.0%
! GTTAATTTAGTCCTGAAATA+TGG - chr2_1:68839881-68839900 Msa0220460:intron 25.0%
! ACTGATAAAAACCATATTTC+AGG + chr2_1:68839895-68839914 None:intergenic 25.0%
! TTTGTACTTTCAATACTTTC+AGG - chr2_1:68839962-68839981 Msa0220460:CDS 25.0%
! CAATGAGTAAACAGTAATAT+TGG + chr2_1:68840021-68840040 None:intergenic 25.0%
! GACTTAATACAAAAAAAAGG+AGG + chr2_1:68840050-68840069 None:intergenic 25.0%
! CTAAAATAGTCTGTAACTTT+AGG - chr2_1:68840086-68840105 Msa0220460:CDS 25.0%
! AAAATAGTCTGTAACTTTAG+GGG - chr2_1:68840088-68840107 Msa0220460:CDS 25.0%
!! GAAAAATTTTGTGCCAAAAT+TGG - chr2_1:68840282-68840301 Msa0220460:intron 25.0%
! GATCAAATTACTTATTGGAA+TGG + chr2_1:68840456-68840475 None:intergenic 25.0%
!!! TAAGATTTGTTAAGTGATTC+TGG + chr2_1:68840630-68840649 None:intergenic 25.0%
! TTATAATCAATCAATTGAGC+TGG - chr2_1:68841029-68841048 Msa0220460:intron 25.0%
! AGGTCAATTAAAACAAATTG+TGG + chr2_1:68841086-68841105 None:intergenic 25.0%
! CAATGCAGATATTGATAAAT+TGG + chr2_1:68841246-68841265 None:intergenic 25.0%
! TAATATAGACTCTCACAATA+TGG - chr2_1:68841379-68841398 Msa0220460:intron 25.0%
! AAAAAAAACAACTATTGGCA+TGG + chr2_1:68841544-68841563 None:intergenic 25.0%
! AATGGTAAGAAATTAAAACG+TGG + chr2_1:68841859-68841878 None:intergenic 25.0%
! TGTAATAAAAAAAGGGTCAA+TGG + chr2_1:68841877-68841896 None:intergenic 25.0%
! AAAAGAGAAAAAGTCAACAA+AGG + chr2_1:68842086-68842105 None:intergenic 25.0%
!!! AACAATATTTTTGTTTGCGT+AGG - chr2_1:68842277-68842296 Msa0220460:intron 25.0%
!! AAGGATCTTTTAGATACATT+AGG - chr2_1:68838257-68838276 Msa0220460:intron 25.0%
!! TGAAGTATGTACAGAAATTT+TGG + chr2_1:68842589-68842608 None:intergenic 25.0%
!! GAAAACAACACCTATAATTT+TGG + chr2_1:68842953-68842972 None:intergenic 25.0%
! GTTGATTGTAAAATTTGTGT+TGG - chr2_1:68843139-68843158 Msa0220460:CDS 25.0%
!!! CAATTTTAATTGCTTCTATC+AGG - chr2_1:68843245-68843264 Msa0220460:intron 25.0%
!! GACAAAAAAGTACATATATC+TGG - chr2_1:68843499-68843518 Msa0220460:CDS 25.0%
! ACTATTGAGTAAACTAATTC+AGG - chr2_1:68839188-68839207 Msa0220460:intron 25.0%
!!! TATACTCTTTTCTAAAACTG+AGG - chr2_1:68843687-68843706 Msa0220460:intron 25.0%
!!! CATTTACTTTAGGATCAATT+AGG + chr2_1:68844207-68844226 None:intergenic 25.0%
! GAAATCATTTATATTCCAGA+AGG - chr2_1:68844331-68844350 Msa0220460:intron 25.0%
!! ATCATATACTTTGTTTACCA+AGG + chr2_1:68844414-68844433 None:intergenic 25.0%
! AAAGTATATGATTGTGATTG+TGG - chr2_1:68844422-68844441 Msa0220460:intron 25.0%
! AAAATAATTTCCATGTGTAC+TGG - chr2_1:68844487-68844506 Msa0220460:exon 25.0%
! GTTGAAATTACTTATTGGAA+AGG + chr2_1:68844555-68844574 None:intergenic 25.0%
! GAGTTGTTGAAATTACTTAT+TGG + chr2_1:68844560-68844579 None:intergenic 25.0%
ACACATGTAGTAAATGAGTT+AGG - chr2_1:68837812-68837831 Msa0220460:three_prime_UTR 30.0%
!! TTTTATTTGTCCAGGTGAAA+AGG - chr2_1:68838061-68838080 Msa0220460:CDS 30.0%
TCCAAGTATACCATATTTCT+GGG + chr2_1:68838109-68838128 None:intergenic 30.0%
TAAAATCAAAGGCAATAGCA+CGG + chr2_1:68838166-68838185 None:intergenic 30.0%
AGATACATTAGGTATCAACA+AGG - chr2_1:68838268-68838287 Msa0220460:intron 30.0%
! GACATATAATTTGGAACGAA+GGG + chr2_1:68838348-68838367 None:intergenic 30.0%
! TGACATATAATTTGGAACGA+AGG + chr2_1:68838349-68838368 None:intergenic 30.0%
TATGTTCACAAGATTACACT+TGG - chr2_1:68838702-68838721 Msa0220460:CDS 30.0%
AGAAAAAAATGTGAGAGGAA+AGG - chr2_1:68838771-68838790 Msa0220460:CDS 30.0%
TTCTATCAGGCTATCATTAT+TGG - chr2_1:68838837-68838856 Msa0220460:intron 30.0%
ATCATTATTGGTAAGGACTT+TGG - chr2_1:68838849-68838868 Msa0220460:intron 30.0%
AGGTGATAATCAAGAAATCA+TGG - chr2_1:68839308-68839327 Msa0220460:intron 30.0%
GCATCACTATATGAAAAATC+TGG - chr2_1:68839393-68839412 Msa0220460:intron 30.0%
ATTCATATCATTCAAATCCG+AGG + chr2_1:68839562-68839581 None:intergenic 30.0%
! ACTAACTTTTGCCGATAAAT+CGG + chr2_1:68839637-68839656 None:intergenic 30.0%
! AATGTATTAGGCATTTTCAC+CGG - chr2_1:68839782-68839801 Msa0220460:intron 30.0%
TATTGGTCACTAAGTATGTA+AGG + chr2_1:68840004-68840023 None:intergenic 30.0%
!!! TACAGACTATTTTAGAGCAT+TGG + chr2_1:68840081-68840100 None:intergenic 30.0%
AAATAGTCTGTAACTTTAGG+GGG - chr2_1:68840089-68840108 Msa0220460:CDS 30.0%
GAAACTACATATATTCCAGA+AGG - chr2_1:68840304-68840323 Msa0220460:intron 30.0%
AAATTACTTATTGGAATGGG+AGG + chr2_1:68840452-68840471 None:intergenic 30.0%
AATTTGATCAAGAACTCTGT+CGG - chr2_1:68840467-68840486 Msa0220460:intron 30.0%
GTTAGCATTATGTTGTAGAT+TGG - chr2_1:68840556-68840575 Msa0220460:intron 30.0%
ACTCAACATGTGTAAAAGTA+TGG + chr2_1:68840952-68840971 None:intergenic 30.0%
! CTTTTACACATGTTGAGTTT+TGG - chr2_1:68840954-68840973 Msa0220460:intron 30.0%
AATAACTTCTTAGTCGAGAT+CGG + chr2_1:68841799-68841818 None:intergenic 30.0%
GTAAGAAATTAAAACGTGGT+TGG + chr2_1:68841855-68841874 None:intergenic 30.0%
TACATGGATTTCCAGAAATA+TGG - chr2_1:68842320-68842339 Msa0220460:intron 30.0%
TTCCAGAAATATGGTATACA+TGG - chr2_1:68842329-68842348 Msa0220460:intron 30.0%
ACCAGAAAAAGCAACTATAA+TGG - chr2_1:68842441-68842460 Msa0220460:intron 30.0%
!!! TCCATTATAGTTGCTTTTTC+TGG + chr2_1:68842445-68842464 None:intergenic 30.0%
AGATACATTAGGTATCAACA+AGG - chr2_1:68838268-68838287 Msa0220460:intron 30.0%
TATGTTGGAGATACTATACT+AGG + chr2_1:68842552-68842571 None:intergenic 30.0%
ACTTCAGCTTAGATATAATC+AGG - chr2_1:68842603-68842622 Msa0220460:intron 30.0%
AGCACAAAACTTATGATCAA+AGG - chr2_1:68842763-68842782 Msa0220460:intron 30.0%
ATAAGTGTTACGAGAGATAA+TGG + chr2_1:68842901-68842920 None:intergenic 30.0%
!! CTATAATTTTGGGAGTGATA+GGG + chr2_1:68842942-68842961 None:intergenic 30.0%
!!! GTGTTGTTTTCCACTAAAAT+CGG - chr2_1:68842962-68842981 Msa0220460:intron 30.0%
ATGAAAGTTGAGATTTCAGA+GGG - chr2_1:68842986-68843005 Msa0220460:CDS 30.0%
! CTTATGATCTATGATAGTGT+AGG - chr2_1:68843075-68843094 Msa0220460:CDS 30.0%
!!! AACGTTGTCTGATAGTTTTT+TGG - chr2_1:68843217-68843236 Msa0220460:intron 30.0%
! TAGTAATGTAGAAGCCTTTT+GGG + chr2_1:68843410-68843429 None:intergenic 30.0%
! GGAAAAAAAGTACGTGTATT+TGG + chr2_1:68843537-68843556 None:intergenic 30.0%
GCATCACTATATGAAAAATC+TGG - chr2_1:68839393-68839412 Msa0220460:intron 30.0%
CTGTAAACAATTTGATGGAA+GGG + chr2_1:68844056-68844075 None:intergenic 30.0%
TCTGTAAACAATTTGATGGA+AGG + chr2_1:68844057-68844076 None:intergenic 30.0%
AGTAATTTCAACAACTCTGT+AGG - chr2_1:68844563-68844582 Msa0220460:five_prime_UTR 30.0%
TGTTCTCCATCTTTGATGAA+GGG + chr2_1:68837911-68837930 None:intergenic 35.0%
ATGTTCTCCATCTTTGATGA+AGG + chr2_1:68837912-68837931 None:intergenic 35.0%
TCCCAGAAATATGGTATACT+TGG - chr2_1:68838105-68838124 Msa0220460:CDS 35.0%
CTCCAAGTATACCATATTTC+TGG + chr2_1:68838110-68838129 None:intergenic 35.0%
!! GCTATTGCCTTTGATTTTAG+AGG - chr2_1:68838167-68838186 Msa0220460:CDS 35.0%
!! TCCATAGCCTCTAAAATCAA+AGG + chr2_1:68838177-68838196 None:intergenic 35.0%
! TCCATTAAAGTTGCCTTTTC+CGG + chr2_1:68838221-68838240 None:intergenic 35.0%
GGGAGTAACATTATTGTACT+AGG + chr2_1:68838328-68838347 None:intergenic 35.0%
!! GAACAAGACACTTTTGACTA+AGG - chr2_1:68838799-68838818 Msa0220460:intron 35.0%
TCAGGCTATCATTATTGGTA+AGG - chr2_1:68838842-68838861 Msa0220460:intron 35.0%
!!! ATGACAGAAGCTACTTTTTC+TGG + chr2_1:68838909-68838928 None:intergenic 35.0%
GTAGCTTCTGTCATAACTTT+AGG - chr2_1:68838915-68838934 Msa0220460:intron 35.0%
!! CTTTTGGAAGAAGATGGTTT+TGG + chr2_1:68838974-68838993 None:intergenic 35.0%
CAAAACCATCTTCTTCCAAA+AGG - chr2_1:68838972-68838991 Msa0220460:intron 35.0%
GTATCTGATTCCATTTGAAC+AGG - chr2_1:68839094-68839113 Msa0220460:CDS 35.0%
ACATGTCTATCCTGTTCAAA+TGG + chr2_1:68839107-68839126 None:intergenic 35.0%
GAACAGGATAGACATGTTTA+AGG - chr2_1:68839110-68839129 Msa0220460:CDS 35.0%
ATTTCTGCATTGCATTACGT+TGG - chr2_1:68839500-68839519 Msa0220460:intron 35.0%
GAATCACTTAAACAAGACCT+CGG - chr2_1:68839542-68839561 Msa0220460:intron 35.0%
! TAACTTTTGCCGATAAATCG+GGG + chr2_1:68839635-68839654 None:intergenic 35.0%
! CTAACTTTTGCCGATAAATC+GGG + chr2_1:68839636-68839655 None:intergenic 35.0%
GATTTATCGGCAAAAGTTAG+TGG - chr2_1:68839636-68839655 Msa0220460:intron 35.0%
ACTAGCATAACATACACTCA+AGG - chr2_1:68839934-68839953 Msa0220460:CDS 35.0%
ACATTGTTTATGATCCACAC+AGG - chr2_1:68840134-68840153 Msa0220460:intron 35.0%
!! CATTGACTTTAGGATCAGTT+AGG + chr2_1:68840180-68840199 None:intergenic 35.0%
GGAATTGTTCATGCACAAAA+TGG + chr2_1:68840333-68840352 None:intergenic 35.0%
!! ATCAAACGCTTTGTTTGTCA+AGG + chr2_1:68840387-68840406 None:intergenic 35.0%
!! CAAAGCGTTTGATTTGATTG+TGG - chr2_1:68840394-68840413 Msa0220460:intron 35.0%
!!! ACTTTACGTTTTGACTCTCT+CGG - chr2_1:68840603-68840622 Msa0220460:intron 35.0%
TATGCGTTGTATTGCAAGAT+TGG - chr2_1:68840858-68840877 Msa0220460:intron 35.0%
TCTGCATTGTTAGTTGAGTT+AGG - chr2_1:68841257-68841276 Msa0220460:intron 35.0%
CAAGGAAGTAATGCACATAT+GGG + chr2_1:68841511-68841530 None:intergenic 35.0%
AAAAACAACTATTGGCATGG+AGG + chr2_1:68841541-68841560 None:intergenic 35.0%
! TTTGAGGGGAATAGTTGTTT+TGG - chr2_1:68841563-68841582 Msa0220460:intron 35.0%
GCGCTATAAACATGGTATAT+AGG - chr2_1:68841592-68841611 Msa0220460:intron 35.0%
AATCTTTCTCGTGTCTATTG+AGG + chr2_1:68841689-68841708 None:intergenic 35.0%
TCAGTTGAATTCTCCTCAAT+CGG + chr2_1:68841757-68841776 None:intergenic 35.0%
! AAAGCAGTGGTTTTCATACA+TGG - chr2_1:68842304-68842323 Msa0220460:intron 35.0%
CTCCATGTATACCATATTTC+TGG + chr2_1:68842334-68842353 None:intergenic 35.0%
CATTTGCAACAGCAATCATT+TGG + chr2_1:68838136-68838155 None:intergenic 35.0%
TAGAATCAAAGGCTATAGCA+CGG + chr2_1:68842390-68842409 None:intergenic 35.0%
TATGGACAAAACTTACCTTC+AGG - chr2_1:68842682-68842701 Msa0220460:intron 35.0%
AAAAAACGCTATGATCCTGA+AGG + chr2_1:68842700-68842719 None:intergenic 35.0%
CTGACACATTTCATTAGTGT+CGG - chr2_1:68842798-68842817 Msa0220460:intron 35.0%
!! CCTATAATTTTGGGAGTGAT+AGG + chr2_1:68842943-68842962 None:intergenic 35.0%
CCTATCACTCCCAAAATTAT+AGG - chr2_1:68842940-68842959 Msa0220460:intron 35.0%
!!! AACTTTCATGCCGATTTTAG+TGG + chr2_1:68842975-68842994 None:intergenic 35.0%
CATGAAAGTTGAGATTTCAG+AGG - chr2_1:68842985-68843004 Msa0220460:CDS 35.0%
! TCATAGATCATAAGTGCTGT+AGG + chr2_1:68843069-68843088 None:intergenic 35.0%
!! AGGTACAAGATTTGCTACAA+AGG + chr2_1:68843298-68843317 None:intergenic 35.0%
! CTAGTAATGTAGAAGCCTTT+TGG + chr2_1:68843411-68843430 None:intergenic 35.0%
CAAAAGGCTTCTACATTACT+AGG - chr2_1:68843409-68843428 Msa0220460:CDS 35.0%
TGAGACTTTGATTACCTGTA+TGG + chr2_1:68843844-68843863 None:intergenic 35.0%
! ACTACGTTTTTCTTTTGGCA+AGG + chr2_1:68843932-68843951 None:intergenic 35.0%
TGCCAAAAGAAAAACGTAGT+TGG - chr2_1:68843932-68843951 Msa0220460:intron 35.0%
GCCAAAAGAAAAACGTAGTT+GGG - chr2_1:68843933-68843952 Msa0220460:intron 35.0%
! TCCCAACTACGTTTTTCTTT+TGG + chr2_1:68843937-68843956 None:intergenic 35.0%
AAAAGAAAAACGTAGTTGGG+AGG - chr2_1:68843936-68843955 Msa0220460:intron 35.0%
AAACTGACTAACCACCTTTA+GGG + chr2_1:68843970-68843989 None:intergenic 35.0%
TAAACTGACTAACCACCTTT+AGG + chr2_1:68843971-68843990 None:intergenic 35.0%
CCAACGTAAAAATGCATTTG+AGG + chr2_1:68843996-68844015 None:intergenic 35.0%
! CCTCAAATGCATTTTTACGT+TGG - chr2_1:68843993-68844012 Msa0220460:intron 35.0%
ACATTGTTTATGATCCACAC+AGG - chr2_1:68840134-68840153 Msa0220460:intron 35.0%
AGTGCAGGAACATTTACTTT+AGG + chr2_1:68844217-68844236 None:intergenic 35.0%
GACTATTGTTTCAACTTTCC+TGG - chr2_1:68844256-68844275 Msa0220460:CDS 35.0%
AAGCTCATCATAGAATTCCT+TGG - chr2_1:68844394-68844413 Msa0220460:intron 35.0%
TATGATTGTGATTGTGGTTG+TGG - chr2_1:68844428-68844447 Msa0220460:CDS 35.0%
GTCTCATGCTTAATGTTGTA+TGG - chr2_1:68844464-68844483 Msa0220460:CDS 35.0%
GTGTGTGTGTTGGAGTTATA+TGG + chr2_1:68837880-68837899 None:intergenic 40.0%
ACTTCACCCTTCATCAAAGA+TGG - chr2_1:68837902-68837921 Msa0220460:intron 40.0%
! AAAACCACTACCTTTTCACC+TGG + chr2_1:68838074-68838093 None:intergenic 40.0%
!! AAGGTAGTGGTTTTCTTGCA+TGG - chr2_1:68838080-68838099 Msa0220460:CDS 40.0%
TGCATGGATTCCCAGAAATA+TGG - chr2_1:68838096-68838115 Msa0220460:CDS 40.0%
! ATGATTGCTGTTGCAAATGC+TGG - chr2_1:68838137-68838156 Msa0220460:CDS 40.0%
!! GCCTTTGATTTTAGAGGCTA+TGG - chr2_1:68838173-68838192 Msa0220460:CDS 40.0%
GATCCTTGACTTCATCAACA+AGG + chr2_1:68838244-68838263 None:intergenic 40.0%
!!! CAGAAGCTACTTTTTCTGGA+TGG + chr2_1:68838905-68838924 None:intergenic 40.0%
!! AGAAGCCTTTTGGAAGAAGA+TGG + chr2_1:68838980-68838999 None:intergenic 40.0%
! CTAGTGATGTAGAAGCCTTT+TGG + chr2_1:68838990-68839009 None:intergenic 40.0%
CAAAAGGCTTCTACATCACT+AGG - chr2_1:68838988-68839007 Msa0220460:CDS 40.0%
AGTAAACTAATTCAGGAGCC+TGG - chr2_1:68839195-68839214 Msa0220460:intron 40.0%
GTAAACTAATTCAGGAGCCT+GGG - chr2_1:68839196-68839215 Msa0220460:intron 40.0%
CTTGATTATCACCTGCTACT+GGG + chr2_1:68839302-68839321 None:intergenic 40.0%
TCTTGATTATCACCTGCTAC+TGG + chr2_1:68839303-68839322 None:intergenic 40.0%
AAGTCTTGCTCAGAAAACCA+TGG + chr2_1:68839363-68839382 None:intergenic 40.0%
GAATAGAACATGTAGTTGCG+AGG - chr2_1:68839578-68839597 Msa0220460:intron 40.0%
TGGTCACTAAGTATGTAAGG+TGG + chr2_1:68840001-68840020 None:intergenic 40.0%
!! AGTGCAGGAACATTGACTTT+AGG + chr2_1:68840190-68840209 None:intergenic 40.0%
GACTACTGTTTCAACTTTCC+TGG - chr2_1:68840229-68840248 Msa0220460:CDS 40.0%
! TAAGCTTGTTCACTTCCTCT+GGG + chr2_1:68840354-68840373 None:intergenic 40.0%
! ATAAGCTTGTTCACTTCCTC+TGG + chr2_1:68840355-68840374 None:intergenic 40.0%
! CTCGTCTTTATTGGCCATTT+TGG + chr2_1:68840703-68840722 None:intergenic 40.0%
TCTCCTTCTCTCGTCTTTAT+TGG + chr2_1:68840712-68840731 None:intergenic 40.0%
TGGTAATTCTCGCATTGTGA+GGG + chr2_1:68840932-68840951 None:intergenic 40.0%
ATGGTAATTCTCGCATTGTG+AGG + chr2_1:68840933-68840952 None:intergenic 40.0%
TTTGGTCTCCTTTCATCATC+AGG - chr2_1:68840972-68840991 Msa0220460:intron 40.0%
AGAAACTGATCACATGTACG+TGG - chr2_1:68841431-68841450 Msa0220460:intron 40.0%
CACATATGGGTGGAAGAAAT+GGG + chr2_1:68841498-68841517 None:intergenic 40.0%
CCAAGGAAGTAATGCACATA+TGG + chr2_1:68841512-68841531 None:intergenic 40.0%
CCATATGTGCATTACTTCCT+TGG - chr2_1:68841509-68841528 Msa0220460:intron 40.0%
!!! AGGGGAATAGTTGTTTTGGT+TGG - chr2_1:68841567-68841586 Msa0220460:intron 40.0%
!!! GGAATAGTTGTTTTGGTTGG+TGG - chr2_1:68841570-68841589 Msa0220460:intron 40.0%
TAACACCTCTACGATCTTTG+TGG - chr2_1:68841662-68841681 Msa0220460:intron 40.0%
AATTCTCCTCAATCGGTTGA+AGG + chr2_1:68841750-68841769 None:intergenic 40.0%
GGTGTGTGAGGTAGTTATAA+TGG + chr2_1:68842111-68842130 None:intergenic 40.0%
ATGTTCTCCATCTTTGATGC+TGG + chr2_1:68842138-68842157 None:intergenic 40.0%
TCACTTCTACTTGACTGTGT+TGG + chr2_1:68842161-68842180 None:intergenic 40.0%
ACACAGTCAAGTAGAAGTGA+AGG - chr2_1:68842161-68842180 Msa0220460:CDS 40.0%
CACAGTCAAGTAGAAGTGAA+GGG - chr2_1:68842162-68842181 Msa0220460:CDS 40.0%
! ATGATTGCTGTTGCAAATGC+TGG - chr2_1:68838137-68838156 Msa0220460:CDS 40.0%
GCTATAGCCTTTGATTCTAG+AGG - chr2_1:68842391-68842410 Msa0220460:intron 40.0%
!! TCCATAGCCTCTAGAATCAA+AGG + chr2_1:68842401-68842420 None:intergenic 40.0%
GATCCTTGACTTCATCAACA+AGG + chr2_1:68838244-68838263 None:intergenic 40.0%
! CTTATGATCAAAGGTGTGTC+TGG - chr2_1:68842772-68842791 Msa0220460:intron 40.0%
TCAGTATGTCAGTGTTTCGT+GGG - chr2_1:68842841-68842860 Msa0220460:intron 40.0%
GTTGGAAGAAGATAAGTGTG+AGG - chr2_1:68843157-68843176 Msa0220460:CDS 40.0%
TTCTATCAGGCATTCCTCAT+TGG - chr2_1:68843258-68843277 Msa0220460:intron 40.0%
!! ACTTTTTCTGGATAGACAGC+AGG + chr2_1:68843318-68843337 None:intergenic 40.0%
TGCTGTCTATCCAGAAAAAG+TGG - chr2_1:68843317-68843336 Msa0220460:intron 40.0%
!!! ATGAGAGAAGCCACTTTTTC+TGG + chr2_1:68843330-68843349 None:intergenic 40.0%
GTGGCTTCTCTCATAACTTT+AGG - chr2_1:68843336-68843355 Msa0220460:intron 40.0%
AAGGCTTCTACATTACTAGG+TGG - chr2_1:68843412-68843431 Msa0220460:CDS 40.0%
AGTAAACTAATTCAGGAGCC+TGG - chr2_1:68839195-68839214 Msa0220460:intron 40.0%
GTAAACTAATTCAGGAGCCT+GGG - chr2_1:68839196-68839215 Msa0220460:intron 40.0%
! TCCATGATTTCACTTGCTAC+TGG + chr2_1:68843715-68843734 None:intergenic 40.0%
AACTGACTAACCACCTTTAG+GGG + chr2_1:68843969-68843988 None:intergenic 40.0%
GATGCATAAACCTCACACAT+TGG - chr2_1:68844107-68844126 Msa0220460:intron 40.0%
ATATACACTGCCAATGTGTG+AGG + chr2_1:68844120-68844139 None:intergenic 40.0%
TTGTTTCAACTTTCCTGGCA+TGG - chr2_1:68844261-68844280 Msa0220460:CDS 40.0%
TGCACAAAATGACTTCCTTC+TGG + chr2_1:68844349-68844368 None:intergenic 40.0%
! AATTTCCATGTGTACTGGTG+TGG - chr2_1:68844492-68844511 Msa0220460:exon 40.0%
CACAGTCATGTGGAAGTGAA+GGG - chr2_1:68837936-68837955 Msa0220460:intron 45.0%
AAGCTCCATGTAGCTGAGAT+CGG - chr2_1:68837963-68837982 Msa0220460:intron 45.0%
TTGTCCAGGTGAAAAGGTAG+TGG - chr2_1:68838067-68838086 Msa0220460:CDS 45.0%
GCCGGAAAAGGCAACTTTAA+TGG - chr2_1:68838217-68838236 Msa0220460:intron 45.0%
! GGACCTTGTTGATGAAGTCA+AGG - chr2_1:68838238-68838257 Msa0220460:intron 45.0%
AGCTACAAGATATGCTGGGA+TGG + chr2_1:68838877-68838896 None:intergenic 45.0%
CAGCAGCTACAAGATATGCT+GGG + chr2_1:68838881-68838900 None:intergenic 45.0%
ACAGCAGCTACAAGATATGC+TGG + chr2_1:68838882-68838901 None:intergenic 45.0%
! GAAGGACCAGGAAGTATGAA+GGG + chr2_1:68838945-68838964 None:intergenic 45.0%
! AGAAGGACCAGGAAGTATGA+AGG + chr2_1:68838946-68838965 None:intergenic 45.0%
!!! AGATGGTTTTGGACAGCAGA+AGG + chr2_1:68838963-68838982 None:intergenic 45.0%
AAGGCTTCTACATCACTAGG+TGG - chr2_1:68838991-68839010 Msa0220460:CDS 45.0%
CTTGCTCAGAAAACCATGGT+GGG + chr2_1:68839359-68839378 None:intergenic 45.0%
TCTTGCTCAGAAAACCATGG+TGG + chr2_1:68839360-68839379 None:intergenic 45.0%
TGGCTTCAGATTTGCATTGC+AGG - chr2_1:68839413-68839432 Msa0220460:intron 45.0%
TTGCATTGCAGGTTCCATAC+AGG - chr2_1:68839424-68839443 Msa0220460:intron 45.0%
CTGTTTCAACTTTCCTGGCA+TGG - chr2_1:68840234-68840253 Msa0220460:CDS 45.0%
ATGGAAGACTACATTCGAGG+TGG - chr2_1:68840253-68840272 Msa0220460:intron 45.0%
TGGAAGACTACATTCGAGGT+GGG - chr2_1:68840254-68840273 Msa0220460:intron 45.0%
TGCACAAAATGGCTTCCTTC+TGG + chr2_1:68840322-68840341 None:intergenic 45.0%
TGTGCATGAACAATTCCCAG+AGG - chr2_1:68840336-68840355 Msa0220460:intron 45.0%
TGGCCAATAAAGACGAGAGA+AGG - chr2_1:68840706-68840725 Msa0220460:intron 45.0%
GACGAGAGAAGGAGAAAAAG+AGG - chr2_1:68840717-68840736 Msa0220460:intron 45.0%
GAAGGAGAAAAAGAGGACCA+AGG - chr2_1:68840724-68840743 Msa0220460:intron 45.0%
GAAAAAGAGGACCAAGGCAA+TGG - chr2_1:68840730-68840749 Msa0220460:intron 45.0%
! CGACAACACCTGATGATGAA+AGG + chr2_1:68840983-68841002 None:intergenic 45.0%
GGGATTCGAACATCCAAACA+CGG - chr2_1:68841210-68841229 Msa0220460:intron 45.0%
GAACATCCAAACACGGATGA+AGG - chr2_1:68841217-68841236 Msa0220460:intron 45.0%
! GGTTTTTCTTCCCTCTTTCG+CGG - chr2_1:68841467-68841486 Msa0220460:intron 45.0%
GCACATATGGGTGGAAGAAA+TGG + chr2_1:68841499-68841518 None:intergenic 45.0%
GGAAGTAATGCACATATGGG+TGG + chr2_1:68841508-68841527 None:intergenic 45.0%
ACCTAACCTTCAACCGATTG+AGG - chr2_1:68841741-68841760 Msa0220460:intron 45.0%
TCCTCAATCGGTTGAAGGTT+AGG + chr2_1:68841745-68841764 None:intergenic 45.0%
CTGTCTGCATCTGCACATTA+AGG - chr2_1:68842030-68842049 Msa0220460:CDS 45.0%
ACCTCATCCAGCATCAAAGA+TGG - chr2_1:68842128-68842147 Msa0220460:CDS 45.0%
TCCATCTTTGATGCTGGATG+AGG + chr2_1:68842132-68842151 None:intergenic 45.0%
AAGCTCCATGTAGCTGAGAT+TGG - chr2_1:68837963-68837982 Msa0220460:intron 45.0%
CAGTTCCAATCTCAGCTACA+TGG + chr2_1:68842197-68842216 None:intergenic 45.0%
CATGTAGCTGAGATTGGAAC+TGG - chr2_1:68842195-68842214 Msa0220460:CDS 45.0%
TTGCGTAGGTGAAAAAGCAG+TGG - chr2_1:68842291-68842310 Msa0220460:intron 45.0%
! GCCTTTGATTCTAGAGGCTA+TGG - chr2_1:68842397-68842416 Msa0220460:intron 45.0%
!!! GTTGCTTTTTCTGGTTCTGC+TGG + chr2_1:68842436-68842455 None:intergenic 45.0%
! GGACCTTGTTGATGAAGTCA+AGG - chr2_1:68838238-68838257 Msa0220460:intron 45.0%
ACTGACACGTCAACATGTGT+CGG + chr2_1:68842826-68842845 None:intergenic 45.0%
GTCAGTATGTCAGTGTTTCG+TGG - chr2_1:68842840-68842859 Msa0220460:intron 45.0%
TCGTGGGATAGAAATGCTAG+AGG - chr2_1:68842857-68842876 Msa0220460:intron 45.0%
CGTGGGATAGAAATGCTAGA+GGG - chr2_1:68842858-68842877 Msa0220460:intron 45.0%
GTGGGATAGAAATGCTAGAG+GGG - chr2_1:68842859-68842878 Msa0220460:intron 45.0%
TGGGATAGAAATGCTAGAGG+GGG - chr2_1:68842860-68842879 Msa0220460:intron 45.0%
TGGGAGTGATAGGGTTGTTT+GGG + chr2_1:68842933-68842952 None:intergenic 45.0%
TTGGGAGTGATAGGGTTGTT+TGG + chr2_1:68842934-68842953 None:intergenic 45.0%
TCAGGCATTCCTCATTGGTA+AGG - chr2_1:68843263-68843282 Msa0220460:intron 45.0%
TTCCTCATTGGTAAGGACTC+TGG - chr2_1:68843270-68843289 Msa0220460:intron 45.0%
GGCATTCCTTTCATGAATCC+TGG - chr2_1:68843357-68843376 Msa0220460:intron 45.0%
GAAGGACCAGGATTCATGAA+AGG + chr2_1:68843366-68843385 None:intergenic 45.0%
!! AGATGGTTCTGGATTGCAGA+AGG + chr2_1:68843384-68843403 None:intergenic 45.0%
!! CTTTTGGGAGAAGATGGTTC+TGG + chr2_1:68843395-68843414 None:intergenic 45.0%
CAGAACCATCTTCTCCCAAA+AGG - chr2_1:68843393-68843412 Msa0220460:intron 45.0%
!! AGAAGCCTTTTGGGAGAAGA+TGG + chr2_1:68843401-68843420 None:intergenic 45.0%
CTTCTACATTACTAGGTGGC+AGG - chr2_1:68843416-68843435 Msa0220460:CDS 45.0%
GCCAGTAGCAAGTGAAATCA+TGG - chr2_1:68843711-68843730 Msa0220460:intron 45.0%
AAGTCTTCCTCAGAGAACCA+TGG + chr2_1:68843766-68843785 None:intergenic 45.0%
TGGCTTCAGATTTGCATTGC+AGG - chr2_1:68839413-68839432 Msa0220460:intron 45.0%
TTGCATTGCAGGTTCCATAC+AGG - chr2_1:68839424-68839443 Msa0220460:intron 45.0%
TGTTCCTGCACTGCTGATAA+TGG - chr2_1:68844225-68844244 Msa0220460:CDS 45.0%
GTTCCTGCACTGCTGATAAT+GGG - chr2_1:68844226-68844245 Msa0220460:CDS 45.0%
ATGGAAGACTACATCCGAAG+TGG - chr2_1:68844280-68844299 Msa0220460:CDS 45.0%
TGGAAGACTACATCCGAAGT+GGG - chr2_1:68844281-68844300 Msa0220460:CDS 45.0%
! AATTTTTCACCGCCCCACTT+CGG + chr2_1:68844297-68844316 None:intergenic 45.0%
TGTGCATGAACAATTCCCAG+AGG - chr2_1:68840336-68840355 Msa0220460:intron 45.0%
! TGAGCTTGTTCACTTCCTCT+GGG + chr2_1:68844381-68844400 None:intergenic 45.0%
! ATGAGCTTGTTCACTTCCTC+TGG + chr2_1:68844382-68844401 None:intergenic 45.0%
GATTGTGATTGTGGTTGTGG+AGG - chr2_1:68844431-68844450 Msa0220460:CDS 45.0%
!!! AAGAATATTTTTTTATATAA+GGG + chr2_1:68842232-68842251 None:intergenic 5.0%
GGTGAAGTGAGTGTGTGTGT+TGG + chr2_1:68837890-68837909 None:intergenic 50.0%
GAACATCCAGCACAGTCATG+TGG - chr2_1:68837926-68837945 Msa0220460:intron 50.0%
TCACTTCCACATGACTGTGC+TGG + chr2_1:68837935-68837954 None:intergenic 50.0%
GCACAGTCATGTGGAAGTGA+AGG - chr2_1:68837935-68837954 Msa0220460:intron 50.0%
CAGTTCCGATCTCAGCTACA+TGG + chr2_1:68837971-68837990 None:intergenic 50.0%
CATGTAGCTGAGATCGGAAC+TGG - chr2_1:68837969-68837988 Msa0220460:exon 50.0%
TTCTGATCATCCAGCTGTGC+CGG - chr2_1:68838199-68838218 Msa0220460:CDS 50.0%
GGCATTCCCTTCATACTTCC+TGG - chr2_1:68838936-68838955 Msa0220460:intron 50.0%
! TTTTGGACAGCAGAAGGACC+AGG + chr2_1:68838957-68838976 None:intergenic 50.0%
CTTCTACATCACTAGGTGGC+AGG - chr2_1:68838995-68839014 Msa0220460:CDS 50.0%
AACTAATTCAGGAGCCTGGG+AGG - chr2_1:68839199-68839218 Msa0220460:intron 50.0%
ACTAATTCAGGAGCCTGGGA+GGG - chr2_1:68839200-68839219 Msa0220460:intron 50.0%
AAAAGTGAGGTCCCAGTAGC+AGG - chr2_1:68839288-68839307 Msa0220460:intron 50.0%
! TCAGAAAACCATGGTGGGAG+GGG + chr2_1:68839354-68839373 None:intergenic 50.0%
! CTCAGAAAACCATGGTGGGA+GGG + chr2_1:68839355-68839374 None:intergenic 50.0%
AGGAGAGACTCCATTGAAGG+TGG - chr2_1:68839598-68839617 Msa0220460:intron 50.0%
GTCTGGCTAACCACCTTCAA+TGG + chr2_1:68839611-68839630 None:intergenic 50.0%
AGCCAGACTCCCCGATTTAT+CGG - chr2_1:68839623-68839642 Msa0220460:intron 50.0%
AGGTCTCTCACAGTGGAAAG+CGG - chr2_1:68840154-68840173 Msa0220460:intron 50.0%
TGTTCCTGCACTGCTGATCA+TGG - chr2_1:68840198-68840217 Msa0220460:CDS 50.0%
GTTCCTGCACTGCTGATCAT+GGG - chr2_1:68840199-68840218 Msa0220460:CDS 50.0%
CGAATGTAGTCTTCCATGCC+AGG + chr2_1:68840250-68840269 None:intergenic 50.0%
GGCATGGAAGACTACATTCG+AGG - chr2_1:68840250-68840269 Msa0220460:intron 50.0%
GGAAGACTACATTCGAGGTG+GGG - chr2_1:68840255-68840274 Msa0220460:intron 50.0%
AAAGAGGACCAAGGCAATGG+TGG - chr2_1:68840733-68840752 Msa0220460:intron 50.0%
ACTGTCAACCACCATTGCCT+TGG + chr2_1:68840744-68840763 None:intergenic 50.0%
GCAATGGTGGTTGACAGTCT+TGG - chr2_1:68840746-68840765 Msa0220460:intron 50.0%
! TGTACGCTGGTTGAACACTC+AGG - chr2_1:68840818-68840837 Msa0220460:intron 50.0%
TTGTCACGCACACAACTGCA+AGG - chr2_1:68841184-68841203 Msa0220460:intron 50.0%
ACGCACACAACTGCAAGGTT+GGG - chr2_1:68841189-68841208 Msa0220460:intron 50.0%
TGGACACCTTCATCCGTGTT+TGG + chr2_1:68841226-68841245 None:intergenic 50.0%
AGGGAAGAAAAACCCAGACG+TGG + chr2_1:68841461-68841480 None:intergenic 50.0%
ATGGGAAATGCCGCGAAAGA+GGG + chr2_1:68841480-68841499 None:intergenic 50.0%
AATGGGAAATGCCGCGAAAG+AGG + chr2_1:68841481-68841500 None:intergenic 50.0%
!! GGTTGGTGGCGCTATAAACA+TGG - chr2_1:68841584-68841603 Msa0220460:intron 50.0%
GAGGTCCACAAAGATCGTAG+AGG + chr2_1:68841670-68841689 None:intergenic 50.0%
CTGACACGTCAACATGTGTC+GGG + chr2_1:68842825-68842844 None:intergenic 50.0%
GGAGTGATAGGGTTGTTTGG+GGG + chr2_1:68842931-68842950 None:intergenic 50.0%
GGGAGTGATAGGGTTGTTTG+GGG + chr2_1:68842932-68842951 None:intergenic 50.0%
CACCAGAGTCCTTACCAATG+AGG + chr2_1:68843275-68843294 None:intergenic 50.0%
TTCTGGATTGCAGAAGGACC+AGG + chr2_1:68843378-68843397 None:intergenic 50.0%
AACTAATTCAGGAGCCTGGG+AGG - chr2_1:68839199-68839218 Msa0220460:intron 50.0%
ACTAATTCAGGAGCCTGGGA+GGG - chr2_1:68839200-68839219 Msa0220460:intron 50.0%
CTTCCTCAGAGAACCATGGT+GGG + chr2_1:68843762-68843781 None:intergenic 50.0%
TCTTCCTCAGAGAACCATGG+TGG + chr2_1:68843763-68843782 None:intergenic 50.0%
AGGTCTCTCACAGTGGAAAG+TGG - chr2_1:68840154-68840173 Msa0220460:intron 50.0%
TCACCCATTATCAGCAGTGC+AGG + chr2_1:68844232-68844251 None:intergenic 50.0%
GGAAGACTACATCCGAAGTG+GGG - chr2_1:68844282-68844301 Msa0220460:CDS 50.0%
TCACACCACACCAGTACACA+TGG + chr2_1:68844500-68844519 None:intergenic 50.0%
TCATCCAGCTGTGCCGGAAA+AGG - chr2_1:68838205-68838224 Msa0220460:CDS 55.0%
AAATCTGCTTCTGCCCTCCC+AGG + chr2_1:68839216-68839235 None:intergenic 55.0%
GGGAGGGCAGAAGCAGATTT+CGG - chr2_1:68839216-68839235 Msa0220460:intron 55.0%
! GCTCAGAAAACCATGGTGGG+AGG + chr2_1:68839356-68839375 None:intergenic 55.0%
GCGAGGAGAGACTCCATTGA+AGG - chr2_1:68839595-68839614 Msa0220460:intron 55.0%
TGCCGATAAATCGGGGAGTC+TGG + chr2_1:68839628-68839647 None:intergenic 55.0%
TCCACACAGGTCTCTCACAG+TGG - chr2_1:68840147-68840166 Msa0220460:intron 55.0%
TCCACTGTGAGAGACCTGTG+TGG + chr2_1:68840151-68840170 None:intergenic 55.0%
TCACCCATGATCAGCAGTGC+AGG + chr2_1:68840205-68840224 None:intergenic 55.0%
AGACTACATTCGAGGTGGGG+TGG - chr2_1:68840258-68840277 Msa0220460:intron 55.0%
CACGCACACAACTGCAAGGT+TGG - chr2_1:68841188-68841207 Msa0220460:intron 55.0%
CGCACACAACTGCAAGGTTG+GGG - chr2_1:68841190-68841209 Msa0220460:intron 55.0%
GATGCTGGATGAGGTGTGTG+AGG + chr2_1:68842123-68842142 None:intergenic 55.0%
AAATCTGCTTCTGCCCTCCC+AGG + chr2_1:68839216-68839235 None:intergenic 55.0%
GGGAGGGCAGAAGCAGATTT+CGG - chr2_1:68839216-68839235 Msa0220460:intron 55.0%
! ATGGTGGGAGGGGAGTAGAT+GGG + chr2_1:68839344-68839363 None:intergenic 55.0%
! TCAGAGAACCATGGTGGGAG+GGG + chr2_1:68843757-68843776 None:intergenic 55.0%
! CTCAGAGAACCATGGTGGGA+GGG + chr2_1:68843758-68843777 None:intergenic 55.0%
AGGAGAGACTCCCCTAAAGG+TGG - chr2_1:68843956-68843975 Msa0220460:intron 55.0%
TCCACACAGGTCTCTCACAG+TGG - chr2_1:68840147-68840166 Msa0220460:intron 55.0%
TCCACTGTGAGAGACCTGTG+TGG + chr2_1:68840151-68840170 None:intergenic 55.0%
CGGATGTAGTCTTCCATGCC+AGG + chr2_1:68844277-68844296 None:intergenic 55.0%
AGACTACATCCGAAGTGGGG+CGG - chr2_1:68844285-68844304 Msa0220460:CDS 55.0%
! GTTGCCTTTTCCGGCACAGC+TGG + chr2_1:68838212-68838231 None:intergenic 60.0%
! CATGGTGGGAGGGGAGTAGA+TGG + chr2_1:68839345-68839364 None:intergenic 60.0%
CATCTACTCCCCTCCCACCA+TGG - chr2_1:68839343-68839362 Msa0220460:intron 60.0%
! GCTACGCGAGTCTTGTACGC+TGG - chr2_1:68840805-68840824 Msa0220460:intron 60.0%
! TGGCATGGAGGCGCATTCCA+AGG + chr2_1:68841529-68841548 None:intergenic 60.0%
! CATGGTGGGAGGGGAGTAGA+TGG + chr2_1:68839345-68839364 None:intergenic 60.0%
CATCTACTCCCCTCCCACCA+TGG - chr2_1:68839343-68839362 Msa0220460:intron 60.0%
! CCTCAGAGAACCATGGTGGG+AGG + chr2_1:68843759-68843778 None:intergenic 60.0%
CCTCCCACCATGGTTCTCTG+AGG - chr2_1:68843756-68843775 Msa0220460:intron 60.0%
GGGAGGAGAGACTCCCCTAA+AGG - chr2_1:68843953-68843972 Msa0220460:intron 60.0%
TGTACGTGGCGCTCCACGTC+TGG - chr2_1:68841445-68841464 Msa0220460:intron 65.0%
GTACGTGGCGCTCCACGTCT+GGG - chr2_1:68841446-68841465 Msa0220460:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 68837794 68844620 68837794 ID=Msa0220460;Name=Msa0220460
chr2_1 mRNA 68837794 68844620 68837794 ID=Msa0220460-mRNA-1;Parent=Msa0220460;Name=Msa0220460-mRNA-1;_AED=0.17;_eAED=0.17;_QI=127|0.8|0.72|1|0.7|0.63|11|117|610
chr2_1 exon 68837794 68837893 68837794 ID=Msa0220460-mRNA-1:exon:19476;Parent=Msa0220460-mRNA-1
chr2_1 exon 68837965 68838231 68837965 ID=Msa0220460-mRNA-1:exon:19475;Parent=Msa0220460-mRNA-1
chr2_1 exon 68838566 68838792 68838566 ID=Msa0220460-mRNA-1:exon:19474;Parent=Msa0220460-mRNA-1
chr2_1 exon 68838977 68839147 68838977 ID=Msa0220460-mRNA-1:exon:19473;Parent=Msa0220460-mRNA-1
chr2_1 exon 68839901 68840115 68839901 ID=Msa0220460-mRNA-1:exon:19472;Parent=Msa0220460-mRNA-1
chr2_1 exon 68840198 68840267 68840198 ID=Msa0220460-mRNA-1:exon:19471;Parent=Msa0220460-mRNA-1
chr2_1 exon 68842015 68842258 68842015 ID=Msa0220460-mRNA-1:exon:19470;Parent=Msa0220460-mRNA-1
chr2_1 exon 68842969 68843204 68842969 ID=Msa0220460-mRNA-1:exon:19469;Parent=Msa0220460-mRNA-1
chr2_1 exon 68843398 68843568 68843398 ID=Msa0220460-mRNA-1:exon:19468;Parent=Msa0220460-mRNA-1
chr2_1 exon 68844161 68844339 68844161 ID=Msa0220460-mRNA-1:exon:19467;Parent=Msa0220460-mRNA-1
chr2_1 exon 68844424 68844620 68844424 ID=Msa0220460-mRNA-1:exon:19466;Parent=Msa0220460-mRNA-1
chr2_1 five_prime_UTR 68844494 68844620 68844494 ID=Msa0220460-mRNA-1:five_prime_utr;Parent=Msa0220460-mRNA-1
chr2_1 CDS 68844424 68844493 68844424 ID=Msa0220460-mRNA-1:cds;Parent=Msa0220460-mRNA-1
chr2_1 CDS 68844161 68844339 68844161 ID=Msa0220460-mRNA-1:cds;Parent=Msa0220460-mRNA-1
chr2_1 CDS 68843398 68843568 68843398 ID=Msa0220460-mRNA-1:cds;Parent=Msa0220460-mRNA-1
chr2_1 CDS 68842969 68843204 68842969 ID=Msa0220460-mRNA-1:cds;Parent=Msa0220460-mRNA-1
chr2_1 CDS 68842015 68842258 68842015 ID=Msa0220460-mRNA-1:cds;Parent=Msa0220460-mRNA-1
chr2_1 CDS 68840198 68840267 68840198 ID=Msa0220460-mRNA-1:cds;Parent=Msa0220460-mRNA-1
chr2_1 CDS 68839901 68840115 68839901 ID=Msa0220460-mRNA-1:cds;Parent=Msa0220460-mRNA-1
chr2_1 CDS 68838977 68839147 68838977 ID=Msa0220460-mRNA-1:cds;Parent=Msa0220460-mRNA-1
chr2_1 CDS 68838566 68838792 68838566 ID=Msa0220460-mRNA-1:cds;Parent=Msa0220460-mRNA-1
chr2_1 CDS 68837982 68838231 68837982 ID=Msa0220460-mRNA-1:cds;Parent=Msa0220460-mRNA-1
chr2_1 three_prime_UTR 68837965 68837981 68837965 ID=Msa0220460-mRNA-1:three_prime_utr;Parent=Msa0220460-mRNA-1
chr2_1 three_prime_UTR 68837794 68837893 68837794 ID=Msa0220460-mRNA-1:three_prime_utr;Parent=Msa0220460-mRNA-1
Gene Sequence

>Msa0220460

ATGGAGAACATCCAGCACAGTCATGTGGAAGTGAAGGGACTAAAGCTCCATGTAGCTGAGATCGGAACTGGTGAAAAGGTAGTGGTTTTCTTGCATGGATTCCCAGAAATATGGTATACTTGGAGATATCAAATGATTGCTGTTGCAAATGCTGGATACCGTGCTATTGCCTTTGATTTTAGAGGCTATGGACTTTCTGATCATCCAGCTGTGCCGGAAAAGGCAACTTTAATGGACCTTGTTGATGAAGCTATCATTATTGGTAAGGACTTTGGTGCCATCCCAGCATATCTTGTAGCTGCTGTCCATCCAGAAAAAGTAGCTTCTGTCATAACTTTAGGCATTCCCTTCATACTTCCTGGTCCTTCTGCTGTCCAAAACCATCTTCTTCCAAAAGGCTTCTACATCACTAGGTGGCAGGAGCCTGGGAGGGCAGAAGCAGATTTCGGCCGCTTTGATGTTAAATCAGTTATAAGGAACATCTATATTCTCTTTTCTAAAAGTGAGGTCCCAGTAGCAGGTGATAATCAAGAAATCATGGACTTGTTTAAGCCATCTACTCCCCTCCCACCATGGTTTTCTGAGCAAGACTTGACAGCTTATGCATCACTATATGAAAAATCTGGCTTCAGATTTGCATTGCAGGTTCCATACAGGTCTCTCACAGTGGAAAGCGGCCTAACTGATCCTAAAGTCAATGTTCCTGCACTGCTGATCATGGGTGAGAAAGACTACTGTTTCAACTTTCCTGGCATGGAAGACTACATTCGAGGTGGGGTGGCGAAAAATTTTGTGCCAAAATTGGAAACTACATATATTCCAGAAGGAAGCCATTTTGTGCATGAACAATTCCCAGAGGAAGTGAACAAGCTTATCATTGAATTCCTTGACAAACAAAGCATGGAGAACATCCAACACAGTCAAGTAGAAGTGAAGGGACTAAAGCTCCATGTAGCTGAGATTGGAACTGGTGAAAAAGCAGTGGTTTTCATACATGGATTTCCAGAAATATGGTATACATGGAGATACCAAATGATTGCTGTTGCAAATGCTGGATACCGTGCTATAGCCTTTGATTCTAGAGGCTATGGACTCTCTGATCATCCAGCAGAACCAGAAAAAGCAACTATAATGGACCTTGTTGATGAAGTCAAGGATCTTTTAGATACATTAGGTATCAACAAGGCATTCCTCATTGGTAAGGACTCTGGTGCCTTTGTAGCAAATCTTGTACCTGCTGTCTATCCAGAAAAAGTGGCTTCTCTCATAACTTTAGGCATTCCTTTCATGAATCCTGGTCCTTCTGCAATCCAGAACCATCTTCTCCCAAAAGGCTTCTACATTACTAGGTGGCAGGAGCCTGGGAGGGCAGAAGCAGATTTCGGTCGCTTTGATGTTAAATCTGTTATAAGGAACATCTATATACTCTTTTCTAAAACTGAGGTGCCAGTAGCAAGTGAAATCATGGACTTGTTTAACCCATCTACTCCCCTCCCACCATGGTTCTCTGAGGAAGACTTGACAGCTTATGCATCACTATATGAAAAATCTGGCTTCAGATTTGCATTGCAGGTTCCATACAGGTCTCTCACAGTGGAAAGTGGCCTAATTGATCCTAAAGTAAATGTTCCTGCACTGCTGATAATGGGTGAGAAAGACTATTGTTTCAACTTTCCTGGCATGGAAGACTACATCCGAAGTGGGGCGGTGAAAAATTTTGTGCCAGACTTAGAAATCATTTATATTCCAGAAGGAAGTCATTTTGTGCATGAACAATTCCCAGAGGAAGTGAACAAGCTCATCATAGAATTCCTTGGTAAACAAAGTATATGA

Protein sequence

>Msa0220460

MENIQHSHVEVKGLKLHVAEIGTGEKVVVFLHGFPEIWYTWRYQMIAVANAGYRAIAFDFRGYGLSDHPAVPEKATLMDLVDEAIIIGKDFGAIPAYLVAAVHPEKVASVITLGIPFILPGPSAVQNHLLPKGFYITRWQEPGRAEADFGRFDVKSVIRNIYILFSKSEVPVAGDNQEIMDLFKPSTPLPPWFSEQDLTAYASLYEKSGFRFALQVPYRSLTVESGLTDPKVNVPALLIMGEKDYCFNFPGMEDYIRGGVAKNFVPKLETTYIPEGSHFVHEQFPEEVNKLIIEFLDKQSMENIQHSQVEVKGLKLHVAEIGTGEKAVVFIHGFPEIWYTWRYQMIAVANAGYRAIAFDSRGYGLSDHPAEPEKATIMDLVDEVKDLLDTLGINKAFLIGKDSGAFVANLVPAVYPEKVASLITLGIPFMNPGPSAIQNHLLPKGFYITRWQEPGRAEADFGRFDVKSVIRNIYILFSKTEVPVASEIMDLFNPSTPLPPWFSEEDLTAYASLYEKSGFRFALQVPYRSLTVESGLIDPKVNVPALLIMGEKDYCFNFPGMEDYIRSGAVKNFVPDLEIIYIPEGSHFVHEQFPEEVNKLIIEFLGKQSI*