Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221040 | KEH39234.1 | 92.391 | 276 | 6 | 3 | 272 | 532 | 279 | 554 | 6.83e-170 | 502 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221040 | A0A072VB28 | 92.391 | 276 | 6 | 3 | 272 | 532 | 279 | 554 | 3.26e-170 | 502 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0221040 | Msa0262490 | 0.855377 | 6.574171e-62 | -8.615850e-47 |
Msa0221040 | Msa0337660 | 0.917159 | 7.456686e-86 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221040 | MtrunA17_Chr2g0325861 | 81.928 | 249 | 35 | 2 | 294 | 532 | 609 | 857 | 2.04e-134 | 410 |
Msa0221040 | MtrunA17_Chr2g0280141 | 52.881 | 295 | 111 | 7 | 255 | 522 | 450 | 743 | 3.06e-79 | 265 |
Msa0221040 | MtrunA17_Chr2g0325711 | 52.632 | 266 | 99 | 4 | 278 | 516 | 491 | 756 | 1.59e-72 | 246 |
Msa0221040 | MtrunA17_Chr2g0325811 | 42.967 | 391 | 183 | 12 | 149 | 516 | 378 | 751 | 1.55e-67 | 233 |
Msa0221040 | MtrunA17_Chr2g0325231 | 41.542 | 402 | 185 | 7 | 162 | 514 | 489 | 889 | 4.54e-64 | 224 |
Msa0221040 | MtrunA17_Chr6g0471251 | 47.222 | 288 | 113 | 6 | 266 | 516 | 401 | 686 | 5.39e-57 | 203 |
Msa0221040 | MtrunA17_Chr2g0325661 | 50.362 | 276 | 100 | 5 | 278 | 516 | 520 | 795 | 4.37e-56 | 202 |
Msa0221040 | MtrunA17_Chr2g0325611 | 43.072 | 332 | 131 | 9 | 256 | 532 | 196 | 524 | 5.59e-55 | 194 |
Msa0221040 | MtrunA17_Chr2g0325701 | 50.000 | 256 | 99 | 6 | 262 | 494 | 340 | 589 | 1.45e-53 | 191 |
Msa0221040 | MtrunA17_Chr2g0325621 | 48.276 | 261 | 108 | 6 | 285 | 523 | 332 | 587 | 1.15e-51 | 187 |
Msa0221040 | MtrunA17_Chr2g0325351 | 32.091 | 617 | 297 | 20 | 7 | 516 | 6 | 607 | 1.72e-51 | 186 |
Msa0221040 | MtrunA17_Chr5g0434761 | 55.191 | 183 | 64 | 3 | 352 | 516 | 2 | 184 | 4.58e-51 | 175 |
Msa0221040 | MtrunA17_Chr2g0325321 | 49.627 | 268 | 103 | 7 | 262 | 497 | 494 | 761 | 1.86e-49 | 182 |
Msa0221040 | MtrunA17_Chr2g0325291 | 59.887 | 177 | 53 | 4 | 365 | 523 | 1 | 177 | 2.59e-48 | 167 |
Msa0221040 | MtrunA17_Chr5g0416271 | 42.403 | 283 | 105 | 6 | 272 | 502 | 215 | 491 | 8.00e-48 | 173 |
Msa0221040 | MtrunA17_Chr2g0325361 | 47.860 | 257 | 103 | 6 | 295 | 521 | 746 | 1001 | 3.40e-45 | 171 |
Msa0221040 | MtrunA17_Chr2g0333341 | 42.492 | 313 | 146 | 7 | 201 | 499 | 320 | 612 | 1.42e-41 | 158 |
Msa0221040 | MtrunA17_Chr2g0325771 | 58.621 | 174 | 58 | 4 | 333 | 494 | 1 | 172 | 3.39e-41 | 146 |
Msa0221040 | MtrunA17_Chr3g0140591 | 55.758 | 165 | 54 | 4 | 351 | 497 | 9 | 172 | 4.82e-41 | 145 |
Msa0221040 | MtrunA17_Chr2g0332951 | 49.268 | 205 | 78 | 6 | 310 | 494 | 9 | 207 | 7.23e-41 | 146 |
Msa0221040 | MtrunA17_Chr2g0332961 | 50.562 | 178 | 66 | 5 | 301 | 470 | 190 | 353 | 2.29e-35 | 135 |
Msa0221040 | MtrunA17_Chr2g0325631 | 53.005 | 183 | 68 | 3 | 352 | 516 | 2 | 184 | 5.56e-35 | 132 |
Msa0221040 | MtrunA17_Chr2g0325331 | 56.291 | 151 | 48 | 3 | 353 | 485 | 3 | 153 | 7.84e-32 | 120 |
Msa0221040 | MtrunA17_Chr4g0044221 | 34.122 | 296 | 154 | 11 | 173 | 437 | 11 | 296 | 8.79e-27 | 110 |
Msa0221040 | MtrunA17_Chr8g0361651 | 43.979 | 191 | 86 | 6 | 343 | 516 | 138 | 324 | 4.08e-25 | 108 |
Msa0221040 | MtrunA17_Chr2g0325241 | 29.742 | 427 | 229 | 17 | 24 | 422 | 41 | 424 | 1.21e-24 | 106 |
Msa0221040 | MtrunA17_Chr4g0024061 | 38.674 | 181 | 72 | 5 | 355 | 523 | 425 | 578 | 1.21e-22 | 102 |
Msa0221040 | MtrunA17_Chr7g0235921 | 59.615 | 104 | 38 | 2 | 414 | 514 | 1 | 103 | 2.28e-17 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 109 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTAAAGCTCTTTGGAATTC+TGG | 0.161876 | 2_1:+69597696 | Msa0221040:CDS |
GTTTCTTTGTGATAAGTTTC+TGG | 0.166574 | 2_1:-69598730 | None:intergenic |
CCTTCTATCAATTTATAAAT+TGG | 0.166885 | 2_1:+69597609 | Msa0221040:CDS |
GAAGATAACCTTGCAGAAAA+AGG | 0.274506 | 2_1:-69595844 | None:intergenic |
TTTGAAGAGGAAATTAATTC+AGG | 0.287569 | 2_1:+69596849 | Msa0221040:CDS |
GAAAATTCGGTGGCGGTTCT+TGG | 0.301553 | 2_1:+69597577 | Msa0221040:CDS |
GAGGCTTCTCATAACAAGTT+AGG | 0.309524 | 2_1:+69595784 | Msa0221040:CDS |
AAGATAGCTGTAAAGCTCTT+TGG | 0.333191 | 2_1:+69597688 | Msa0221040:CDS |
AGTGGAAGTGGAAGAAGAAA+TGG | 0.345871 | 2_1:+69596035 | Msa0221040:CDS |
TAACATACCAGAAGCTTTAT+CGG | 0.346500 | 2_1:-69597725 | None:intergenic |
AGAAGTGGAAGAAGTAGAAA+TGG | 0.348963 | 2_1:+69596314 | Msa0221040:CDS |
AGGGACATTAACGTCCGATT+TGG | 0.354143 | 2_1:-69595824 | None:intergenic |
CCAATTTATAAATTGATAGA+AGG | 0.362503 | 2_1:-69597609 | None:intergenic |
GATGCAAGAGATTGCCGGTT+TGG | 0.364990 | 2_1:-69598804 | None:intergenic |
GGAGAATTTGAAGGAGTAGA+AGG | 0.365713 | 2_1:+69596597 | Msa0221040:CDS |
TATGTATGTAGTTCAATAAT+GGG | 0.368573 | 2_1:+69595754 | None:intergenic |
TTATGTATGTAGTTCAATAA+TGG | 0.374855 | 2_1:+69595753 | None:intergenic |
AGTGGAAGACGAAGAGGAAA+AGG | 0.375109 | 2_1:+69596482 | Msa0221040:CDS |
GTAGAAGAAATAAAAGTAGA+AGG | 0.379943 | 2_1:+69596567 | Msa0221040:CDS |
GTAAAGCTCTTTGGAATTCT+GGG | 0.382744 | 2_1:+69597697 | Msa0221040:CDS |
AAGTGAAACTACTGAAAATT+CGG | 0.382904 | 2_1:+69597564 | Msa0221040:CDS |
CATGGTTATCTCAACTTTGT+TGG | 0.384283 | 2_1:+69599039 | Msa0221040:three_prime_UTR |
GAATGTGCAAATGAATTAAC+AGG | 0.384814 | 2_1:+69598941 | Msa0221040:three_prime_UTR |
AGAAGAAGAGGAAGTGGAAG+TGG | 0.384863 | 2_1:+69596389 | Msa0221040:CDS |
CAATCAACTCCTAGCATTGA+TGG | 0.387383 | 2_1:+69597286 | Msa0221040:CDS |
AGAAGAAGAGGAAGTGGAAG+AGG | 0.394857 | 2_1:+69596125 | Msa0221040:CDS |
AGAATTTCAGTTTCGTCACT+TGG | 0.405145 | 2_1:-69597328 | None:intergenic |
GGAAGAAGTGGAAGAGGAAG+AGG | 0.410927 | 2_1:+69596158 | Msa0221040:CDS |
AGAGGAAAAGGAAATGGAAA+TGG | 0.411493 | 2_1:+69596494 | Msa0221040:CDS |
GGAAGAAGAAGAAGAGGAAG+TGG | 0.413038 | 2_1:+69596065 | Msa0221040:CDS |
GGAAGAAGAAGAAGAGGAAG+TGG | 0.413038 | 2_1:+69596200 | Msa0221040:CDS |
GGAAGAAGAAGAAGAGGAAG+TGG | 0.413038 | 2_1:+69596245 | Msa0221040:CDS |
GGAAGAAGAAGAAGAGGAAG+TGG | 0.413038 | 2_1:+69596275 | Msa0221040:CDS |
GGAAGAAGAAGAAGAGGAAG+TGG | 0.413038 | 2_1:+69596431 | Msa0221040:CDS |
AGAAGTGGAAGAAGTGGAAG+AGG | 0.418870 | 2_1:+69596152 | Msa0221040:CDS |
AAAGGAAATGGAAATGGAAA+TGG | 0.419282 | 2_1:+69596500 | Msa0221040:CDS |
AGAAGAGGAAGTGGAAGAAG+TGG | 0.422635 | 2_1:+69596209 | Msa0221040:CDS |
AGAAGAGGAAGTGGAAGAAG+TGG | 0.422635 | 2_1:+69596254 | Msa0221040:CDS |
AGAAGAGGAAGTGGAAGAAG+TGG | 0.422635 | 2_1:+69596347 | Msa0221040:CDS |
TCTTGGATGCAAGAGATTGC+CGG | 0.428413 | 2_1:-69598809 | None:intergenic |
TCTCAGCACATTCAACTTTG+AGG | 0.428704 | 2_1:-69595866 | None:intergenic |
ACGCAAATACAAGATAGAAC+AGG | 0.435749 | 2_1:-69599064 | None:intergenic |
TCAACGCATAATGAATTTGA+TGG | 0.437221 | 2_1:+69596771 | Msa0221040:CDS |
TTTAGAAAGCCAAGTGAAAG+AGG | 0.440363 | 2_1:+69596659 | Msa0221040:CDS |
AGACGAAGAGGAAAAGGAAA+TGG | 0.444103 | 2_1:+69596488 | Msa0221040:CDS |
TTGCATAAATCAGTATAGAT+AGG | 0.444333 | 2_1:-69598966 | None:intergenic |
AGGCTTCTCATAACAAGTTA+GGG | 0.449446 | 2_1:+69595785 | Msa0221040:CDS |
AATAAAAGTAGAAGGAGGAG+AGG | 0.449522 | 2_1:+69596575 | Msa0221040:CDS |
CTTACACAAGGTTTGATATG+TGG | 0.452687 | 2_1:-69597499 | None:intergenic |
GGAAGTAGAAGTGGAAGAAG+TGG | 0.455374 | 2_1:+69596146 | Msa0221040:CDS |
AACAACCAGGTGCGTGAAGA+TGG | 0.458367 | 2_1:-69598899 | None:intergenic |
TCAAAAGAGAATCAGTTTGA+AGG | 0.460401 | 2_1:+69596729 | Msa0221040:CDS |
GGAAGAAGAAATGGAAGAAG+TGG | 0.462448 | 2_1:+69596044 | Msa0221040:CDS |
GGAAGTGGAAGAAGTAGAAG+TGG | 0.469769 | 2_1:+69596080 | Msa0221040:CDS |
GGAGGAGAGGGAGAATTTGA+AGG | 0.470561 | 2_1:+69596588 | Msa0221040:CDS |
TGAAGTGGAAGAAGAAGAAG+TGG | 0.471078 | 2_1:+69596464 | Msa0221040:CDS |
AGTGGAAGAAGAAGTTGAAG+TGG | 0.474405 | 2_1:+69596449 | Msa0221040:CDS |
AACTGACTTCATTGAAGTCA+AGG | 0.475486 | 2_1:+69598833 | Msa0221040:exon |
GGAAGTCGAAGAAGAAGAAG+TGG | 0.476810 | 2_1:+69596179 | Msa0221040:CDS |
GGAAGAAGTGGAAGTAGAAG+TGG | 0.480135 | 2_1:+69596359 | Msa0221040:CDS |
AGAAGTGGAAGAAGAAGAAG+AGG | 0.481072 | 2_1:+69596194 | Msa0221040:CDS |
ATTGCCGGTTTGGTTCTTGT+TGG | 0.486279 | 2_1:-69598794 | None:intergenic |
AGTGGAAGAGGAAGTAGAAG+TGG | 0.488793 | 2_1:+69596137 | Msa0221040:CDS |
TCAGTTTGAAGGAGAAGTGA+AGG | 0.490782 | 2_1:+69596740 | Msa0221040:CDS |
GAAGAAGAAATAGAAGAAGA+GGG | 0.492199 | 2_1:+69596522 | Msa0221040:CDS |
GGAAGAAGAAGTAGTTGAAG+TGG | 0.492338 | 2_1:+69596410 | Msa0221040:CDS |
CATTATTCAAAAGTATAAGA+TGG | 0.494090 | 2_1:+69597411 | Msa0221040:CDS |
GGAAGAAGAAATAGAAGAAG+AGG | 0.494875 | 2_1:+69596521 | Msa0221040:CDS |
TCATTCCATCTTCACGCACC+TGG | 0.495050 | 2_1:+69598894 | Msa0221040:three_prime_UTR |
AGAAGTGGAAGAAGAAGAAG+AGG | 0.498523 | 2_1:+69596059 | Msa0221040:CDS |
AGAAGTGGAAGAAGAAGAAG+AGG | 0.498523 | 2_1:+69596269 | Msa0221040:CDS |
AGAAGTGGAAGAAGAAGAAG+AGG | 0.501323 | 2_1:+69596239 | Msa0221040:CDS |
ACAAGGAGAAGAAGTGGAAG+TGG | 0.502081 | 2_1:+69596023 | Msa0221040:CDS |
TGAAGTGGAAGAAGAAGAAG+AGG | 0.503261 | 2_1:+69596425 | Msa0221040:CDS |
AGAAGAAGTGGAAGACGAAG+AGG | 0.507404 | 2_1:+69596476 | Msa0221040:CDS |
TTCAATAATGGGTGTTGATG+AGG | 0.508201 | 2_1:+69595765 | Msa0221040:exon |
AGAAGTAGAAGAAATAGAAG+TGG | 0.513490 | 2_1:+69596299 | Msa0221040:CDS |
GCATATTGAAGTGCAACAAA+AGG | 0.514374 | 2_1:+69596698 | Msa0221040:CDS |
AAGAAGAAATAGAAGAAGAG+GGG | 0.514897 | 2_1:+69596523 | Msa0221040:CDS |
AAGCAAACAAGGAGAAGAAG+TGG | 0.515254 | 2_1:+69596017 | Msa0221040:CDS |
GAATTTCAGTTTCGTCACTT+GGG | 0.529088 | 2_1:-69597327 | None:intergenic |
AGAAGTGGAAGAAATAGAAG+TGG | 0.529168 | 2_1:+69596224 | Msa0221040:CDS |
TTGTACCAACCTCTTTCACT+TGG | 0.530997 | 2_1:-69596668 | None:intergenic |
ATTACTAAAATCATTTGAAG+AGG | 0.531636 | 2_1:+69596836 | Msa0221040:CDS |
GAAAGCCAAGTGAAAGAGGT+TGG | 0.533084 | 2_1:+69596663 | Msa0221040:CDS |
AATGCCAACAAGAACCAAAC+CGG | 0.535039 | 2_1:+69598790 | Msa0221040:CDS |
ATAAAAGTAGAAGGAGGAGA+GGG | 0.536602 | 2_1:+69596576 | Msa0221040:CDS |
CGCAAATACAAGATAGAACA+GGG | 0.541405 | 2_1:-69599063 | None:intergenic |
TGATGAATCTGTTCAGAAGA+GGG | 0.544231 | 2_1:+69595906 | Msa0221040:CDS |
GAAGAAATAAAAGTAGAAGG+AGG | 0.544772 | 2_1:+69596570 | Msa0221040:CDS |
TGCGTCTATATATATCTCAA+AGG | 0.546977 | 2_1:+69599082 | Msa0221040:three_prime_UTR |
TGAATTTGATGGAGAACTGA+AGG | 0.547104 | 2_1:+69596782 | Msa0221040:CDS |
ACTTCATCTTCATCAAAAGA+AGG | 0.548180 | 2_1:-69597634 | None:intergenic |
ATTATTCAAAAGTATAAGAT+GGG | 0.548310 | 2_1:+69597412 | Msa0221040:CDS |
AAATTCATTATGCGTTGACT+CGG | 0.556616 | 2_1:-69596766 | None:intergenic |
CTACTACAATGTCAGCTAAG+AGG | 0.558698 | 2_1:+69595932 | Msa0221040:CDS |
AGAAGAAATAGAAGAAGAGG+GGG | 0.561401 | 2_1:+69596524 | Msa0221040:CDS |
TTGTCGTCAAGACTCCAAAT+CGG | 0.570085 | 2_1:+69595810 | Msa0221040:CDS |
GAATTTGAAGGAGTAGAAGG+AGG | 0.578088 | 2_1:+69596600 | Msa0221040:CDS |
AAACTTCTTCCATCAATGCT+AGG | 0.582757 | 2_1:-69597295 | None:intergenic |
TTGTTGGCATTATATAAGCA+CGG | 0.583376 | 2_1:-69598778 | None:intergenic |
TTGATGAATCTGTTCAGAAG+AGG | 0.583428 | 2_1:+69595905 | Msa0221040:CDS |
ATCGCTTCTTCTCTTACACA+AGG | 0.586074 | 2_1:-69597511 | None:intergenic |
CTAGAGAAGATTCTCAAACA+TGG | 0.606455 | 2_1:+69599021 | Msa0221040:three_prime_UTR |
AACTACTGAAAATTCGGTGG+CGG | 0.615837 | 2_1:+69597570 | Msa0221040:CDS |
GAAATTCTAGATAATCTGCA+AGG | 0.625701 | 2_1:+69597343 | Msa0221040:CDS |
GTGGCTATAGAAAGCAAACA+AGG | 0.630351 | 2_1:+69596006 | Msa0221040:CDS |
TTGATTTATAACTAACAACC+AGG | 0.654733 | 2_1:-69598912 | None:intergenic |
TGAAACTACTGAAAATTCGG+TGG | 0.678096 | 2_1:+69597567 | Msa0221040:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAATTATATTAACAAACT+AGG | - | chr2_1:69596891-69596910 | None:intergenic | 10.0% |
!!! | ATCTTATACTTTTGAATAAT+GGG | - | chr2_1:69597412-69597431 | None:intergenic | 15.0% |
!!! | ATTATTCAAAAGTATAAGAT+GGG | + | chr2_1:69597412-69597431 | Msa0221040:CDS | 15.0% |
!!! | TATGTTATTTTTTCGTTTTT+TGG | + | chr2_1:69598285-69598304 | Msa0221040:intron | 15.0% |
!! | ATTACTAAAATCATTTGAAG+AGG | + | chr2_1:69596836-69596855 | Msa0221040:CDS | 20.0% |
!! | ATAGAAACATCATTAAATCA+AGG | - | chr2_1:69597207-69597226 | None:intergenic | 20.0% |
!!! | CATCTTATACTTTTGAATAA+TGG | - | chr2_1:69597413-69597432 | None:intergenic | 20.0% |
!!! | CATTATTCAAAAGTATAAGA+TGG | + | chr2_1:69597411-69597430 | Msa0221040:CDS | 20.0% |
!! | CCAATTTATAAATTGATAGA+AGG | - | chr2_1:69597612-69597631 | None:intergenic | 20.0% |
!! | CCTTCTATCAATTTATAAAT+TGG | + | chr2_1:69597609-69597628 | Msa0221040:CDS | 20.0% |
!!! | ATGAAGTTTTAAAGCTTTTT+GGG | + | chr2_1:69597650-69597669 | Msa0221040:intron | 20.0% |
!! | AAGAAAATTAGTATAATAGC+TGG | - | chr2_1:69597776-69597795 | None:intergenic | 20.0% |
!! | AATTTCAACTGATATGTAAT+TGG | + | chr2_1:69597903-69597922 | Msa0221040:intron | 20.0% |
!!! | TTCTTTTGTTCAAAATTCTT+CGG | - | chr2_1:69598131-69598150 | None:intergenic | 20.0% |
! | GTAGAAGAAATAAAAGTAGA+AGG | + | chr2_1:69596567-69596586 | Msa0221040:CDS | 25.0% |
! | AGTAATAGAAGAAAAAGAAG+AGG | + | chr2_1:69596629-69596648 | Msa0221040:CDS | 25.0% |
! | TTTGAAGAGGAAATTAATTC+AGG | + | chr2_1:69596849-69596868 | Msa0221040:CDS | 25.0% |
!! | GCATTTTATTCTTGTTGAAT+TGG | + | chr2_1:69596973-69596992 | Msa0221040:intron | 25.0% |
!! | ATATCCAAAACAACTTTTGA+TGG | - | chr2_1:69597379-69597398 | None:intergenic | 25.0% |
! | AAGTGAAACTACTGAAAATT+CGG | + | chr2_1:69597564-69597583 | Msa0221040:CDS | 25.0% |
!!! | GATGAAGTTTTAAAGCTTTT+TGG | + | chr2_1:69597649-69597668 | Msa0221040:intron | 25.0% |
!! | ACATCATTTGTTAATATCCT+AGG | + | chr2_1:69597822-69597841 | Msa0221040:intron | 25.0% |
!! | CATCATTTGTTAATATCCTA+GGG | + | chr2_1:69597823-69597842 | Msa0221040:intron | 25.0% |
! | ACAGCTAATATCTTAATGTT+AGG | - | chr2_1:69597876-69597895 | None:intergenic | 25.0% |
!! | CTCATTTGTTAAGAGAAATT+TGG | + | chr2_1:69597977-69597996 | Msa0221040:intron | 25.0% |
! | TTAAGAGAAATTTGGTATCT+TGG | + | chr2_1:69597985-69598004 | Msa0221040:intron | 25.0% |
! | AAATTCTTCGGAAAACATAT+CGG | - | chr2_1:69598119-69598138 | None:intergenic | 25.0% |
!!! | CATATGCAAGAATTTTTCAA+AGG | - | chr2_1:69598189-69598208 | None:intergenic | 25.0% |
! | TACAAACATTCTACAATTCA+AGG | + | chr2_1:69598223-69598242 | Msa0221040:intron | 25.0% |
!!! | TCTATTTTTTAAACAGTCTG+AGG | + | chr2_1:69598571-69598590 | Msa0221040:intron | 25.0% |
! | TTGATTTATAACTAACAACC+AGG | - | chr2_1:69598915-69598934 | None:intergenic | 25.0% |
! | TTGCATAAATCAGTATAGAT+AGG | - | chr2_1:69598969-69598988 | None:intergenic | 25.0% |
AAGATAACCTTGCAGAAAAA+GGG | - | chr2_1:69595846-69595865 | None:intergenic | 30.0% | |
CATTCCATGTAAGAAATCAA+AGG | + | chr2_1:69595984-69596003 | Msa0221040:intron | 30.0% | |
AGAAGTAGAAGAAATAGAAG+TGG | + | chr2_1:69596299-69596318 | Msa0221040:CDS | 30.0% | |
AAAGGAAATGGAAATGGAAA+TGG | + | chr2_1:69596500-69596519 | Msa0221040:CDS | 30.0% | |
GAAGAAGAAATAGAAGAAGA+GGG | + | chr2_1:69596522-69596541 | Msa0221040:CDS | 30.0% | |
AAGAAGAAATAGAAGAAGAG+GGG | + | chr2_1:69596523-69596542 | Msa0221040:CDS | 30.0% | |
GAAGAAATAAAAGTAGAAGG+AGG | + | chr2_1:69596570-69596589 | Msa0221040:CDS | 30.0% | |
TCAAAAGAGAATCAGTTTGA+AGG | + | chr2_1:69596729-69596748 | Msa0221040:CDS | 30.0% | |
!! | AAATTCATTATGCGTTGACT+CGG | - | chr2_1:69596769-69596788 | None:intergenic | 30.0% |
TCAACGCATAATGAATTTGA+TGG | + | chr2_1:69596771-69596790 | Msa0221040:CDS | 30.0% | |
GAAACATCATTAAATCAAGG+TGG | - | chr2_1:69597204-69597223 | None:intergenic | 30.0% | |
GAAATTCTAGATAATCTGCA+AGG | + | chr2_1:69597343-69597362 | Msa0221040:CDS | 30.0% | |
! | AGATCCATCAAAAGTTGTTT+TGG | + | chr2_1:69597372-69597391 | Msa0221040:intron | 30.0% |
ACTTCATCTTCATCAAAAGA+AGG | - | chr2_1:69597637-69597656 | None:intergenic | 30.0% | |
! | TAACATACCAGAAGCTTTAT+CGG | - | chr2_1:69597728-69597747 | None:intergenic | 30.0% |
AATTCTTCGGAAAACATATC+GGG | - | chr2_1:69598118-69598137 | None:intergenic | 30.0% | |
TCAAGGATGATAATTGATGA+CGG | + | chr2_1:69598240-69598259 | Msa0221040:intron | 30.0% | |
!!! | TTTCGTTTTTTGGTATGAGA+CGG | + | chr2_1:69598295-69598314 | Msa0221040:intron | 30.0% |
ATAGAACAGCTAAATTGAGA+AGG | - | chr2_1:69598383-69598402 | None:intergenic | 30.0% | |
TAACCAAAACTAAGCAGATT+GGG | - | chr2_1:69598638-69598657 | None:intergenic | 30.0% | |
TTAACCAAAACTAAGCAGAT+TGG | - | chr2_1:69598639-69598658 | None:intergenic | 30.0% | |
!! | GTTAATTAGAACTGACTTGA+TGG | + | chr2_1:69598654-69598673 | Msa0221040:intron | 30.0% |
GTTTCTTTGTGATAAGTTTC+TGG | - | chr2_1:69598733-69598752 | None:intergenic | 30.0% | |
TTGTTGGCATTATATAAGCA+CGG | - | chr2_1:69598781-69598800 | None:intergenic | 30.0% | |
! | TTCAATGAAGTCAGTTTTCT+TGG | - | chr2_1:69598829-69598848 | None:intergenic | 30.0% |
GAATGTGCAAATGAATTAAC+AGG | + | chr2_1:69598941-69598960 | Msa0221040:three_prime_UTR | 30.0% | |
TGCGTCTATATATATCTCAA+AGG | + | chr2_1:69599082-69599101 | Msa0221040:three_prime_UTR | 30.0% | |
!! | TTCAATAATGGGTGTTGATG+AGG | + | chr2_1:69595765-69595784 | Msa0221040:exon | 35.0% |
AGGCTTCTCATAACAAGTTA+GGG | + | chr2_1:69595785-69595804 | Msa0221040:CDS | 35.0% | |
! | TTAATGTCCCTTTTTCTGCA+AGG | + | chr2_1:69595836-69595855 | Msa0221040:CDS | 35.0% |
GAAGATAACCTTGCAGAAAA+AGG | - | chr2_1:69595847-69595866 | None:intergenic | 35.0% | |
TTGATGAATCTGTTCAGAAG+AGG | + | chr2_1:69595905-69595924 | Msa0221040:CDS | 35.0% | |
TGATGAATCTGTTCAGAAGA+GGG | + | chr2_1:69595906-69595925 | Msa0221040:CDS | 35.0% | |
TCCATGTAAGAAATCAAAGG+TGG | + | chr2_1:69595987-69596006 | Msa0221040:intron | 35.0% | |
AGAAGAAGAAGAAGAAGAAG+AGG | + | chr2_1:69596104-69596123 | Msa0221040:CDS | 35.0% | |
AGAAGTGGAAGAAATAGAAG+TGG | + | chr2_1:69596224-69596243 | Msa0221040:CDS | 35.0% | |
AGAAGTGGAAGAAGTAGAAA+TGG | + | chr2_1:69596314-69596333 | Msa0221040:CDS | 35.0% | |
AATGGAAGAAGAAGAAGAAG+AGG | + | chr2_1:69596332-69596351 | Msa0221040:CDS | 35.0% | |
AGAGGAAAAGGAAATGGAAA+TGG | + | chr2_1:69596494-69596513 | Msa0221040:CDS | 35.0% | |
GGAAGAAGAAATAGAAGAAG+AGG | + | chr2_1:69596521-69596540 | Msa0221040:CDS | 35.0% | |
AGAAGAAATAGAAGAAGAGG+GGG | + | chr2_1:69596524-69596543 | Msa0221040:CDS | 35.0% | |
AATAAAAGTAGAAGGAGGAG+AGG | + | chr2_1:69596575-69596594 | Msa0221040:CDS | 35.0% | |
ATAAAAGTAGAAGGAGGAGA+GGG | + | chr2_1:69596576-69596595 | Msa0221040:CDS | 35.0% | |
TTTAGAAAGCCAAGTGAAAG+AGG | + | chr2_1:69596659-69596678 | Msa0221040:CDS | 35.0% | |
GCATATTGAAGTGCAACAAA+AGG | + | chr2_1:69596698-69596717 | Msa0221040:CDS | 35.0% | |
TGAATTTGATGGAGAACTGA+AGG | + | chr2_1:69596782-69596801 | Msa0221040:CDS | 35.0% | |
GCTTCCTAAACTCTTAAGAA+GGG | - | chr2_1:69596933-69596952 | None:intergenic | 35.0% | |
AGCTTCCTAAACTCTTAAGA+AGG | - | chr2_1:69596934-69596953 | None:intergenic | 35.0% | |
TCTCCTAGATTGAAATGCTT+GGG | - | chr2_1:69597147-69597166 | None:intergenic | 35.0% | |
AAACTTCTTCCATCAATGCT+AGG | - | chr2_1:69597298-69597317 | None:intergenic | 35.0% | |
GAATTTCAGTTTCGTCACTT+GGG | - | chr2_1:69597330-69597349 | None:intergenic | 35.0% | |
AGAATTTCAGTTTCGTCACT+TGG | - | chr2_1:69597331-69597350 | None:intergenic | 35.0% | |
CTTACACAAGGTTTGATATG+TGG | - | chr2_1:69597502-69597521 | None:intergenic | 35.0% | |
TGAAACTACTGAAAATTCGG+TGG | + | chr2_1:69597567-69597586 | Msa0221040:CDS | 35.0% | |
AAGATAGCTGTAAAGCTCTT+TGG | + | chr2_1:69597688-69597707 | Msa0221040:CDS | 35.0% | |
!! | TGTAAAGCTCTTTGGAATTC+TGG | + | chr2_1:69597696-69597715 | Msa0221040:CDS | 35.0% |
!! | GTAAAGCTCTTTGGAATTCT+GGG | + | chr2_1:69597697-69597716 | Msa0221040:CDS | 35.0% |
AACAAATGAGACAGAACTGT+TGG | - | chr2_1:69597967-69597986 | None:intergenic | 35.0% | |
ATTCTTCGGAAAACATATCG+GGG | - | chr2_1:69598117-69598136 | None:intergenic | 35.0% | |
! | CAAGGATGATAATTGATGAC+GGG | + | chr2_1:69598241-69598260 | Msa0221040:intron | 35.0% |
!! | AAGGATGATAATTGATGACG+GGG | + | chr2_1:69598242-69598261 | Msa0221040:intron | 35.0% |
! | AACTGACTTCATTGAAGTCA+AGG | + | chr2_1:69598833-69598852 | Msa0221040:exon | 35.0% |
CTAGAGAAGATTCTCAAACA+TGG | + | chr2_1:69599021-69599040 | Msa0221040:three_prime_UTR | 35.0% | |
CATGGTTATCTCAACTTTGT+TGG | + | chr2_1:69599039-69599058 | Msa0221040:three_prime_UTR | 35.0% | |
CGCAAATACAAGATAGAACA+GGG | - | chr2_1:69599066-69599085 | None:intergenic | 35.0% | |
ACGCAAATACAAGATAGAAC+AGG | - | chr2_1:69599067-69599086 | None:intergenic | 35.0% | |
GAGGCTTCTCATAACAAGTT+AGG | + | chr2_1:69595784-69595803 | Msa0221040:CDS | 40.0% | |
TTGTCGTCAAGACTCCAAAT+CGG | + | chr2_1:69595810-69595829 | Msa0221040:CDS | 40.0% | |
TCTCAGCACATTCAACTTTG+AGG | - | chr2_1:69595869-69595888 | None:intergenic | 40.0% | |
CTACTACAATGTCAGCTAAG+AGG | + | chr2_1:69595932-69595951 | Msa0221040:CDS | 40.0% | |
! | GTCTTTTGTTGATGCTGACA+AGG | + | chr2_1:69595954-69595973 | Msa0221040:intron | 40.0% |
! | GCCACCTTTGATTTCTTACA+TGG | - | chr2_1:69595991-69596010 | None:intergenic | 40.0% |
GTGGCTATAGAAAGCAAACA+AGG | + | chr2_1:69596006-69596025 | Msa0221040:CDS | 40.0% | |
AAGCAAACAAGGAGAAGAAG+TGG | + | chr2_1:69596017-69596036 | Msa0221040:CDS | 40.0% | |
AGTGGAAGTGGAAGAAGAAA+TGG | + | chr2_1:69596035-69596054 | Msa0221040:CDS | 40.0% | |
GGAAGAAGAAATGGAAGAAG+TGG | + | chr2_1:69596044-69596063 | Msa0221040:CDS | 40.0% | |
AGAAGTGGAAGAAGAAGAAG+AGG | + | chr2_1:69596059-69596078 | Msa0221040:CDS | 40.0% | |
AGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_1:69596119-69596138 | Msa0221040:CDS | 40.0% | |
AGAAGTGGAAGAAGAAGAAG+AGG | + | chr2_1:69596059-69596078 | Msa0221040:CDS | 40.0% | |
AGAAGTGGAAGAAGAAGAAG+AGG | + | chr2_1:69596059-69596078 | Msa0221040:CDS | 40.0% | |
AGAAGTGGAAGAAGAAGAAG+AGG | + | chr2_1:69596059-69596078 | Msa0221040:CDS | 40.0% | |
AGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_1:69596119-69596138 | Msa0221040:CDS | 40.0% | |
AGTGGAAGAAGAAGAAGAAG+AGG | + | chr2_1:69596098-69596117 | Msa0221040:CDS | 40.0% | |
AGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_1:69596119-69596138 | Msa0221040:CDS | 40.0% | |
GGAAGAAGAAGTAGTTGAAG+TGG | + | chr2_1:69596410-69596429 | Msa0221040:CDS | 40.0% | |
TGAAGTGGAAGAAGAAGAAG+AGG | + | chr2_1:69596425-69596444 | Msa0221040:CDS | 40.0% | |
AGTGGAAGAAGAAGTTGAAG+TGG | + | chr2_1:69596449-69596468 | Msa0221040:CDS | 40.0% | |
TGAAGTGGAAGAAGAAGAAG+TGG | + | chr2_1:69596425-69596444 | Msa0221040:CDS | 40.0% | |
AGACGAAGAGGAAAAGGAAA+TGG | + | chr2_1:69596488-69596507 | Msa0221040:CDS | 40.0% | |
GGAGAATTTGAAGGAGTAGA+AGG | + | chr2_1:69596597-69596616 | Msa0221040:CDS | 40.0% | |
GAATTTGAAGGAGTAGAAGG+AGG | + | chr2_1:69596600-69596619 | Msa0221040:CDS | 40.0% | |
TTGTACCAACCTCTTTCACT+TGG | - | chr2_1:69596671-69596690 | None:intergenic | 40.0% | |
TCAGTTTGAAGGAGAAGTGA+AGG | + | chr2_1:69596740-69596759 | Msa0221040:CDS | 40.0% | |
! | ACTCTTAAGAAGGGCGTAAA+AGG | - | chr2_1:69596924-69596943 | None:intergenic | 40.0% |
TACGCCCTTCTTAAGAGTTT+AGG | + | chr2_1:69596926-69596945 | Msa0221040:intron | 40.0% | |
TCACCCAAGCATTTCAATCT+AGG | + | chr2_1:69597141-69597160 | Msa0221040:intron | 40.0% | |
CTCTCCTAGATTGAAATGCT+TGG | - | chr2_1:69597148-69597167 | None:intergenic | 40.0% | |
! | CAATCAACTCCTAGCATTGA+TGG | + | chr2_1:69597286-69597305 | Msa0221040:CDS | 40.0% |
ATCGCTTCTTCTCTTACACA+AGG | - | chr2_1:69597514-69597533 | None:intergenic | 40.0% | |
! | AACTACTGAAAATTCGGTGG+CGG | + | chr2_1:69597570-69597589 | Msa0221040:CDS | 40.0% |
ATATATCATGCACAGACCCT+AGG | - | chr2_1:69597842-69597861 | None:intergenic | 40.0% | |
GCTTCATACACTTGATGCTA+AGG | + | chr2_1:69597925-69597944 | Msa0221040:intron | 40.0% | |
! | CACACATAATCCAAGAGTGT+CGG | - | chr2_1:69598049-69598068 | None:intergenic | 40.0% |
! | GTTTCTGGACAAAATCTGCA+AGG | - | chr2_1:69598718-69598737 | None:intergenic | 40.0% |
AATGCCAACAAGAACCAAAC+CGG | + | chr2_1:69598790-69598809 | Msa0221040:CDS | 40.0% | |
AGGGACATTAACGTCCGATT+TGG | - | chr2_1:69595827-69595846 | None:intergenic | 45.0% | |
ACAAGGAGAAGAAGTGGAAG+TGG | + | chr2_1:69596023-69596042 | Msa0221040:CDS | 45.0% | |
GGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_1:69596065-69596084 | Msa0221040:CDS | 45.0% | |
GGAAGTGGAAGAAGTAGAAG+TGG | + | chr2_1:69596080-69596099 | Msa0221040:CDS | 45.0% | |
AGAAGAAGAGGAAGTGGAAG+AGG | + | chr2_1:69596071-69596090 | Msa0221040:CDS | 45.0% | |
AGTGGAAGAGGAAGTAGAAG+TGG | + | chr2_1:69596137-69596156 | Msa0221040:CDS | 45.0% | |
GGAAGTAGAAGTGGAAGAAG+TGG | + | chr2_1:69596146-69596165 | Msa0221040:CDS | 45.0% | |
AGAAGTGGAAGAAGTGGAAG+AGG | + | chr2_1:69596152-69596171 | Msa0221040:CDS | 45.0% | |
GGAAGTCGAAGAAGAAGAAG+TGG | + | chr2_1:69596179-69596198 | Msa0221040:CDS | 45.0% | |
GGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_1:69596065-69596084 | Msa0221040:CDS | 45.0% | |
AGAAGAGGAAGTGGAAGAAG+TGG | + | chr2_1:69596074-69596093 | Msa0221040:CDS | 45.0% | |
GGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_1:69596065-69596084 | Msa0221040:CDS | 45.0% | |
AGAAGAGGAAGTGGAAGAAG+TGG | + | chr2_1:69596074-69596093 | Msa0221040:CDS | 45.0% | |
GGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_1:69596065-69596084 | Msa0221040:CDS | 45.0% | |
AGAAGAGGAAGTGGAAGAAG+TGG | + | chr2_1:69596074-69596093 | Msa0221040:CDS | 45.0% | |
GGAAGAAGTGGAAGTAGAAG+TGG | + | chr2_1:69596359-69596378 | Msa0221040:CDS | 45.0% | |
AGAAGAAGAGGAAGTGGAAG+TGG | + | chr2_1:69596071-69596090 | Msa0221040:CDS | 45.0% | |
GGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_1:69596065-69596084 | Msa0221040:CDS | 45.0% | |
AGAAGAAGTGGAAGACGAAG+AGG | + | chr2_1:69596476-69596495 | Msa0221040:CDS | 45.0% | |
AGTGGAAGACGAAGAGGAAA+AGG | + | chr2_1:69596482-69596501 | Msa0221040:CDS | 45.0% | |
GAAAGCCAAGTGAAAGAGGT+TGG | + | chr2_1:69596663-69596682 | Msa0221040:CDS | 45.0% | |
! | GGTTTTGCCGATAAAGCTTC+TGG | + | chr2_1:69597718-69597737 | Msa0221040:CDS | 45.0% |
!! | TTATGAAGCACCGACACTCT+TGG | + | chr2_1:69598036-69598055 | Msa0221040:intron | 45.0% |
GATTATGTGTGTCCCCTTGT+CGG | + | chr2_1:69598058-69598077 | Msa0221040:intron | 45.0% | |
! | CTGCCCAATCTGCTTAGTTT+TGG | + | chr2_1:69598632-69598651 | Msa0221040:intron | 45.0% |
!! | ATTGCCGGTTTGGTTCTTGT+TGG | - | chr2_1:69598797-69598816 | None:intergenic | 45.0% |
TCTTGGATGCAAGAGATTGC+CGG | - | chr2_1:69598812-69598831 | None:intergenic | 45.0% | |
GGAAGAAGTGGAAGAGGAAG+AGG | + | chr2_1:69596158-69596177 | Msa0221040:CDS | 50.0% | |
AGAGGGGGAAGAAGATGAAG+TGG | + | chr2_1:69596539-69596558 | Msa0221040:CDS | 50.0% | |
GGAGGAGAGGGAGAATTTGA+AGG | + | chr2_1:69596588-69596607 | Msa0221040:CDS | 50.0% | |
! | GAAAATTCGGTGGCGGTTCT+TGG | + | chr2_1:69597577-69597596 | Msa0221040:CDS | 50.0% |
! | ATCGGGGTACTTGTGTGAGT+TGG | - | chr2_1:69598101-69598120 | None:intergenic | 50.0% |
! | GATGCAAGAGATTGCCGGTT+TGG | - | chr2_1:69598807-69598826 | None:intergenic | 50.0% |
TCATTCCATCTTCACGCACC+TGG | + | chr2_1:69598894-69598913 | Msa0221040:three_prime_UTR | 50.0% | |
AACAACCAGGTGCGTGAAGA+TGG | - | chr2_1:69598902-69598921 | None:intergenic | 50.0% | |
! | ACAGAGGCGTATCCGACAAG+GGG | - | chr2_1:69598073-69598092 | None:intergenic | 55.0% |
! | CACAGAGGCGTATCCGACAA+GGG | - | chr2_1:69598074-69598093 | None:intergenic | 55.0% |
! | ACACAGAGGCGTATCCGACA+AGG | - | chr2_1:69598075-69598094 | None:intergenic | 55.0% |
TGTCGGATACGCCTCTGTGT+CGG | + | chr2_1:69598075-69598094 | Msa0221040:intron | 55.0% | |
CCAAGACTCTGCAGTCTGCA+TGG | - | chr2_1:69598518-69598537 | None:intergenic | 55.0% | |
CCATGCAGACTGCAGAGTCT+TGG | + | chr2_1:69598515-69598534 | Msa0221040:intron | 55.0% | |
! | GTGTGAGTTGGCCGACACAG+AGG | - | chr2_1:69598089-69598108 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 69595765 | 69599105 | 69595765 | ID=Msa0221040;Name=Msa0221040 |
chr2_1 | mRNA | 69595765 | 69599105 | 69595765 | ID=Msa0221040-mRNA-1;Parent=Msa0221040;Name=Msa0221040-mRNA-1;_AED=0.16;_eAED=0.29;_QI=7|0.4|0.16|1|0.2|0|6|267|532 |
chr2_1 | exon | 69595765 | 69595960 | 69595765 | ID=Msa0221040-mRNA-1:exon:19718;Parent=Msa0221040-mRNA-1 |
chr2_1 | exon | 69596006 | 69596870 | 69596006 | ID=Msa0221040-mRNA-1:exon:19719;Parent=Msa0221040-mRNA-1 |
chr2_1 | exon | 69597281 | 69597384 | 69597281 | ID=Msa0221040-mRNA-1:exon:19720;Parent=Msa0221040-mRNA-1 |
chr2_1 | exon | 69597406 | 69597654 | 69597406 | ID=Msa0221040-mRNA-1:exon:19721;Parent=Msa0221040-mRNA-1 |
chr2_1 | exon | 69597664 | 69597739 | 69597664 | ID=Msa0221040-mRNA-1:exon:19722;Parent=Msa0221040-mRNA-1 |
chr2_1 | exon | 69598723 | 69599105 | 69598723 | ID=Msa0221040-mRNA-1:exon:19723;Parent=Msa0221040-mRNA-1 |
chr2_1 | five_prime_UTR | 69595765 | 69595771 | 69595765 | ID=Msa0221040-mRNA-1:five_prime_utr;Parent=Msa0221040-mRNA-1 |
chr2_1 | CDS | 69595772 | 69595960 | 69595772 | ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1 |
chr2_1 | CDS | 69596006 | 69596870 | 69596006 | ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1 |
chr2_1 | CDS | 69597281 | 69597384 | 69597281 | ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1 |
chr2_1 | CDS | 69597406 | 69597654 | 69597406 | ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1 |
chr2_1 | CDS | 69597664 | 69597739 | 69597664 | ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1 |
chr2_1 | CDS | 69598723 | 69598838 | 69598723 | ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1 |
chr2_1 | three_prime_UTR | 69598839 | 69599105 | 69598839 | ID=Msa0221040-mRNA-1:three_prime_utr;Parent=Msa0221040-mRNA-1 |
Gene Sequence |
Protein sequence |