AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0221040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0221040 MtrunA17_Chr2g0325861 81.928 249 35 2 294 532 609 857 2.04e-134 410
Msa0221040 MtrunA17_Chr2g0280141 52.881 295 111 7 255 522 450 743 3.06e-79 265
Msa0221040 MtrunA17_Chr2g0325711 52.632 266 99 4 278 516 491 756 1.59e-72 246
Msa0221040 MtrunA17_Chr2g0325811 42.967 391 183 12 149 516 378 751 1.55e-67 233
Msa0221040 MtrunA17_Chr2g0325231 41.542 402 185 7 162 514 489 889 4.54e-64 224
Msa0221040 MtrunA17_Chr6g0471251 47.222 288 113 6 266 516 401 686 5.39e-57 203
Msa0221040 MtrunA17_Chr2g0325661 50.362 276 100 5 278 516 520 795 4.37e-56 202
Msa0221040 MtrunA17_Chr2g0325611 43.072 332 131 9 256 532 196 524 5.59e-55 194
Msa0221040 MtrunA17_Chr2g0325701 50.000 256 99 6 262 494 340 589 1.45e-53 191
Msa0221040 MtrunA17_Chr2g0325621 48.276 261 108 6 285 523 332 587 1.15e-51 187
Msa0221040 MtrunA17_Chr2g0325351 32.091 617 297 20 7 516 6 607 1.72e-51 186
Msa0221040 MtrunA17_Chr5g0434761 55.191 183 64 3 352 516 2 184 4.58e-51 175
Msa0221040 MtrunA17_Chr2g0325321 49.627 268 103 7 262 497 494 761 1.86e-49 182
Msa0221040 MtrunA17_Chr2g0325291 59.887 177 53 4 365 523 1 177 2.59e-48 167
Msa0221040 MtrunA17_Chr5g0416271 42.403 283 105 6 272 502 215 491 8.00e-48 173
Msa0221040 MtrunA17_Chr2g0325361 47.860 257 103 6 295 521 746 1001 3.40e-45 171
Msa0221040 MtrunA17_Chr2g0333341 42.492 313 146 7 201 499 320 612 1.42e-41 158
Msa0221040 MtrunA17_Chr2g0325771 58.621 174 58 4 333 494 1 172 3.39e-41 146
Msa0221040 MtrunA17_Chr3g0140591 55.758 165 54 4 351 497 9 172 4.82e-41 145
Msa0221040 MtrunA17_Chr2g0332951 49.268 205 78 6 310 494 9 207 7.23e-41 146
Msa0221040 MtrunA17_Chr2g0332961 50.562 178 66 5 301 470 190 353 2.29e-35 135
Msa0221040 MtrunA17_Chr2g0325631 53.005 183 68 3 352 516 2 184 5.56e-35 132
Msa0221040 MtrunA17_Chr2g0325331 56.291 151 48 3 353 485 3 153 7.84e-32 120
Msa0221040 MtrunA17_Chr4g0044221 34.122 296 154 11 173 437 11 296 8.79e-27 110
Msa0221040 MtrunA17_Chr8g0361651 43.979 191 86 6 343 516 138 324 4.08e-25 108
Msa0221040 MtrunA17_Chr2g0325241 29.742 427 229 17 24 422 41 424 1.21e-24 106
Msa0221040 MtrunA17_Chr4g0024061 38.674 181 72 5 355 523 425 578 1.21e-22 102
Msa0221040 MtrunA17_Chr7g0235921 59.615 104 38 2 414 514 1 103 2.28e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 109 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAAAGCTCTTTGGAATTC+TGG 0.161876 2_1:+69597696 Msa0221040:CDS
GTTTCTTTGTGATAAGTTTC+TGG 0.166574 2_1:-69598730 None:intergenic
CCTTCTATCAATTTATAAAT+TGG 0.166885 2_1:+69597609 Msa0221040:CDS
GAAGATAACCTTGCAGAAAA+AGG 0.274506 2_1:-69595844 None:intergenic
TTTGAAGAGGAAATTAATTC+AGG 0.287569 2_1:+69596849 Msa0221040:CDS
GAAAATTCGGTGGCGGTTCT+TGG 0.301553 2_1:+69597577 Msa0221040:CDS
GAGGCTTCTCATAACAAGTT+AGG 0.309524 2_1:+69595784 Msa0221040:CDS
AAGATAGCTGTAAAGCTCTT+TGG 0.333191 2_1:+69597688 Msa0221040:CDS
AGTGGAAGTGGAAGAAGAAA+TGG 0.345871 2_1:+69596035 Msa0221040:CDS
TAACATACCAGAAGCTTTAT+CGG 0.346500 2_1:-69597725 None:intergenic
AGAAGTGGAAGAAGTAGAAA+TGG 0.348963 2_1:+69596314 Msa0221040:CDS
AGGGACATTAACGTCCGATT+TGG 0.354143 2_1:-69595824 None:intergenic
CCAATTTATAAATTGATAGA+AGG 0.362503 2_1:-69597609 None:intergenic
GATGCAAGAGATTGCCGGTT+TGG 0.364990 2_1:-69598804 None:intergenic
GGAGAATTTGAAGGAGTAGA+AGG 0.365713 2_1:+69596597 Msa0221040:CDS
TATGTATGTAGTTCAATAAT+GGG 0.368573 2_1:+69595754 None:intergenic
TTATGTATGTAGTTCAATAA+TGG 0.374855 2_1:+69595753 None:intergenic
AGTGGAAGACGAAGAGGAAA+AGG 0.375109 2_1:+69596482 Msa0221040:CDS
GTAGAAGAAATAAAAGTAGA+AGG 0.379943 2_1:+69596567 Msa0221040:CDS
GTAAAGCTCTTTGGAATTCT+GGG 0.382744 2_1:+69597697 Msa0221040:CDS
AAGTGAAACTACTGAAAATT+CGG 0.382904 2_1:+69597564 Msa0221040:CDS
CATGGTTATCTCAACTTTGT+TGG 0.384283 2_1:+69599039 Msa0221040:three_prime_UTR
GAATGTGCAAATGAATTAAC+AGG 0.384814 2_1:+69598941 Msa0221040:three_prime_UTR
AGAAGAAGAGGAAGTGGAAG+TGG 0.384863 2_1:+69596389 Msa0221040:CDS
CAATCAACTCCTAGCATTGA+TGG 0.387383 2_1:+69597286 Msa0221040:CDS
AGAAGAAGAGGAAGTGGAAG+AGG 0.394857 2_1:+69596125 Msa0221040:CDS
AGAATTTCAGTTTCGTCACT+TGG 0.405145 2_1:-69597328 None:intergenic
GGAAGAAGTGGAAGAGGAAG+AGG 0.410927 2_1:+69596158 Msa0221040:CDS
AGAGGAAAAGGAAATGGAAA+TGG 0.411493 2_1:+69596494 Msa0221040:CDS
GGAAGAAGAAGAAGAGGAAG+TGG 0.413038 2_1:+69596065 Msa0221040:CDS
GGAAGAAGAAGAAGAGGAAG+TGG 0.413038 2_1:+69596200 Msa0221040:CDS
GGAAGAAGAAGAAGAGGAAG+TGG 0.413038 2_1:+69596245 Msa0221040:CDS
GGAAGAAGAAGAAGAGGAAG+TGG 0.413038 2_1:+69596275 Msa0221040:CDS
GGAAGAAGAAGAAGAGGAAG+TGG 0.413038 2_1:+69596431 Msa0221040:CDS
AGAAGTGGAAGAAGTGGAAG+AGG 0.418870 2_1:+69596152 Msa0221040:CDS
AAAGGAAATGGAAATGGAAA+TGG 0.419282 2_1:+69596500 Msa0221040:CDS
AGAAGAGGAAGTGGAAGAAG+TGG 0.422635 2_1:+69596209 Msa0221040:CDS
AGAAGAGGAAGTGGAAGAAG+TGG 0.422635 2_1:+69596254 Msa0221040:CDS
AGAAGAGGAAGTGGAAGAAG+TGG 0.422635 2_1:+69596347 Msa0221040:CDS
TCTTGGATGCAAGAGATTGC+CGG 0.428413 2_1:-69598809 None:intergenic
TCTCAGCACATTCAACTTTG+AGG 0.428704 2_1:-69595866 None:intergenic
ACGCAAATACAAGATAGAAC+AGG 0.435749 2_1:-69599064 None:intergenic
TCAACGCATAATGAATTTGA+TGG 0.437221 2_1:+69596771 Msa0221040:CDS
TTTAGAAAGCCAAGTGAAAG+AGG 0.440363 2_1:+69596659 Msa0221040:CDS
AGACGAAGAGGAAAAGGAAA+TGG 0.444103 2_1:+69596488 Msa0221040:CDS
TTGCATAAATCAGTATAGAT+AGG 0.444333 2_1:-69598966 None:intergenic
AGGCTTCTCATAACAAGTTA+GGG 0.449446 2_1:+69595785 Msa0221040:CDS
AATAAAAGTAGAAGGAGGAG+AGG 0.449522 2_1:+69596575 Msa0221040:CDS
CTTACACAAGGTTTGATATG+TGG 0.452687 2_1:-69597499 None:intergenic
GGAAGTAGAAGTGGAAGAAG+TGG 0.455374 2_1:+69596146 Msa0221040:CDS
AACAACCAGGTGCGTGAAGA+TGG 0.458367 2_1:-69598899 None:intergenic
TCAAAAGAGAATCAGTTTGA+AGG 0.460401 2_1:+69596729 Msa0221040:CDS
GGAAGAAGAAATGGAAGAAG+TGG 0.462448 2_1:+69596044 Msa0221040:CDS
GGAAGTGGAAGAAGTAGAAG+TGG 0.469769 2_1:+69596080 Msa0221040:CDS
GGAGGAGAGGGAGAATTTGA+AGG 0.470561 2_1:+69596588 Msa0221040:CDS
TGAAGTGGAAGAAGAAGAAG+TGG 0.471078 2_1:+69596464 Msa0221040:CDS
AGTGGAAGAAGAAGTTGAAG+TGG 0.474405 2_1:+69596449 Msa0221040:CDS
AACTGACTTCATTGAAGTCA+AGG 0.475486 2_1:+69598833 Msa0221040:exon
GGAAGTCGAAGAAGAAGAAG+TGG 0.476810 2_1:+69596179 Msa0221040:CDS
GGAAGAAGTGGAAGTAGAAG+TGG 0.480135 2_1:+69596359 Msa0221040:CDS
AGAAGTGGAAGAAGAAGAAG+AGG 0.481072 2_1:+69596194 Msa0221040:CDS
ATTGCCGGTTTGGTTCTTGT+TGG 0.486279 2_1:-69598794 None:intergenic
AGTGGAAGAGGAAGTAGAAG+TGG 0.488793 2_1:+69596137 Msa0221040:CDS
TCAGTTTGAAGGAGAAGTGA+AGG 0.490782 2_1:+69596740 Msa0221040:CDS
GAAGAAGAAATAGAAGAAGA+GGG 0.492199 2_1:+69596522 Msa0221040:CDS
GGAAGAAGAAGTAGTTGAAG+TGG 0.492338 2_1:+69596410 Msa0221040:CDS
CATTATTCAAAAGTATAAGA+TGG 0.494090 2_1:+69597411 Msa0221040:CDS
GGAAGAAGAAATAGAAGAAG+AGG 0.494875 2_1:+69596521 Msa0221040:CDS
TCATTCCATCTTCACGCACC+TGG 0.495050 2_1:+69598894 Msa0221040:three_prime_UTR
AGAAGTGGAAGAAGAAGAAG+AGG 0.498523 2_1:+69596059 Msa0221040:CDS
AGAAGTGGAAGAAGAAGAAG+AGG 0.498523 2_1:+69596269 Msa0221040:CDS
AGAAGTGGAAGAAGAAGAAG+AGG 0.501323 2_1:+69596239 Msa0221040:CDS
ACAAGGAGAAGAAGTGGAAG+TGG 0.502081 2_1:+69596023 Msa0221040:CDS
TGAAGTGGAAGAAGAAGAAG+AGG 0.503261 2_1:+69596425 Msa0221040:CDS
AGAAGAAGTGGAAGACGAAG+AGG 0.507404 2_1:+69596476 Msa0221040:CDS
TTCAATAATGGGTGTTGATG+AGG 0.508201 2_1:+69595765 Msa0221040:exon
AGAAGTAGAAGAAATAGAAG+TGG 0.513490 2_1:+69596299 Msa0221040:CDS
GCATATTGAAGTGCAACAAA+AGG 0.514374 2_1:+69596698 Msa0221040:CDS
AAGAAGAAATAGAAGAAGAG+GGG 0.514897 2_1:+69596523 Msa0221040:CDS
AAGCAAACAAGGAGAAGAAG+TGG 0.515254 2_1:+69596017 Msa0221040:CDS
GAATTTCAGTTTCGTCACTT+GGG 0.529088 2_1:-69597327 None:intergenic
AGAAGTGGAAGAAATAGAAG+TGG 0.529168 2_1:+69596224 Msa0221040:CDS
TTGTACCAACCTCTTTCACT+TGG 0.530997 2_1:-69596668 None:intergenic
ATTACTAAAATCATTTGAAG+AGG 0.531636 2_1:+69596836 Msa0221040:CDS
GAAAGCCAAGTGAAAGAGGT+TGG 0.533084 2_1:+69596663 Msa0221040:CDS
AATGCCAACAAGAACCAAAC+CGG 0.535039 2_1:+69598790 Msa0221040:CDS
ATAAAAGTAGAAGGAGGAGA+GGG 0.536602 2_1:+69596576 Msa0221040:CDS
CGCAAATACAAGATAGAACA+GGG 0.541405 2_1:-69599063 None:intergenic
TGATGAATCTGTTCAGAAGA+GGG 0.544231 2_1:+69595906 Msa0221040:CDS
GAAGAAATAAAAGTAGAAGG+AGG 0.544772 2_1:+69596570 Msa0221040:CDS
TGCGTCTATATATATCTCAA+AGG 0.546977 2_1:+69599082 Msa0221040:three_prime_UTR
TGAATTTGATGGAGAACTGA+AGG 0.547104 2_1:+69596782 Msa0221040:CDS
ACTTCATCTTCATCAAAAGA+AGG 0.548180 2_1:-69597634 None:intergenic
ATTATTCAAAAGTATAAGAT+GGG 0.548310 2_1:+69597412 Msa0221040:CDS
AAATTCATTATGCGTTGACT+CGG 0.556616 2_1:-69596766 None:intergenic
CTACTACAATGTCAGCTAAG+AGG 0.558698 2_1:+69595932 Msa0221040:CDS
AGAAGAAATAGAAGAAGAGG+GGG 0.561401 2_1:+69596524 Msa0221040:CDS
TTGTCGTCAAGACTCCAAAT+CGG 0.570085 2_1:+69595810 Msa0221040:CDS
GAATTTGAAGGAGTAGAAGG+AGG 0.578088 2_1:+69596600 Msa0221040:CDS
AAACTTCTTCCATCAATGCT+AGG 0.582757 2_1:-69597295 None:intergenic
TTGTTGGCATTATATAAGCA+CGG 0.583376 2_1:-69598778 None:intergenic
TTGATGAATCTGTTCAGAAG+AGG 0.583428 2_1:+69595905 Msa0221040:CDS
ATCGCTTCTTCTCTTACACA+AGG 0.586074 2_1:-69597511 None:intergenic
CTAGAGAAGATTCTCAAACA+TGG 0.606455 2_1:+69599021 Msa0221040:three_prime_UTR
AACTACTGAAAATTCGGTGG+CGG 0.615837 2_1:+69597570 Msa0221040:CDS
GAAATTCTAGATAATCTGCA+AGG 0.625701 2_1:+69597343 Msa0221040:CDS
GTGGCTATAGAAAGCAAACA+AGG 0.630351 2_1:+69596006 Msa0221040:CDS
TTGATTTATAACTAACAACC+AGG 0.654733 2_1:-69598912 None:intergenic
TGAAACTACTGAAAATTCGG+TGG 0.678096 2_1:+69597567 Msa0221040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTATATTAACAAACT+AGG - chr2_1:69596891-69596910 None:intergenic 10.0%
!!! ATCTTATACTTTTGAATAAT+GGG - chr2_1:69597412-69597431 None:intergenic 15.0%
!!! ATTATTCAAAAGTATAAGAT+GGG + chr2_1:69597412-69597431 Msa0221040:CDS 15.0%
!!! TATGTTATTTTTTCGTTTTT+TGG + chr2_1:69598285-69598304 Msa0221040:intron 15.0%
!! ATTACTAAAATCATTTGAAG+AGG + chr2_1:69596836-69596855 Msa0221040:CDS 20.0%
!! ATAGAAACATCATTAAATCA+AGG - chr2_1:69597207-69597226 None:intergenic 20.0%
!!! CATCTTATACTTTTGAATAA+TGG - chr2_1:69597413-69597432 None:intergenic 20.0%
!!! CATTATTCAAAAGTATAAGA+TGG + chr2_1:69597411-69597430 Msa0221040:CDS 20.0%
!! CCAATTTATAAATTGATAGA+AGG - chr2_1:69597612-69597631 None:intergenic 20.0%
!! CCTTCTATCAATTTATAAAT+TGG + chr2_1:69597609-69597628 Msa0221040:CDS 20.0%
!!! ATGAAGTTTTAAAGCTTTTT+GGG + chr2_1:69597650-69597669 Msa0221040:intron 20.0%
!! AAGAAAATTAGTATAATAGC+TGG - chr2_1:69597776-69597795 None:intergenic 20.0%
!! AATTTCAACTGATATGTAAT+TGG + chr2_1:69597903-69597922 Msa0221040:intron 20.0%
!!! TTCTTTTGTTCAAAATTCTT+CGG - chr2_1:69598131-69598150 None:intergenic 20.0%
! GTAGAAGAAATAAAAGTAGA+AGG + chr2_1:69596567-69596586 Msa0221040:CDS 25.0%
! AGTAATAGAAGAAAAAGAAG+AGG + chr2_1:69596629-69596648 Msa0221040:CDS 25.0%
! TTTGAAGAGGAAATTAATTC+AGG + chr2_1:69596849-69596868 Msa0221040:CDS 25.0%
!! GCATTTTATTCTTGTTGAAT+TGG + chr2_1:69596973-69596992 Msa0221040:intron 25.0%
!! ATATCCAAAACAACTTTTGA+TGG - chr2_1:69597379-69597398 None:intergenic 25.0%
! AAGTGAAACTACTGAAAATT+CGG + chr2_1:69597564-69597583 Msa0221040:CDS 25.0%
!!! GATGAAGTTTTAAAGCTTTT+TGG + chr2_1:69597649-69597668 Msa0221040:intron 25.0%
!! ACATCATTTGTTAATATCCT+AGG + chr2_1:69597822-69597841 Msa0221040:intron 25.0%
!! CATCATTTGTTAATATCCTA+GGG + chr2_1:69597823-69597842 Msa0221040:intron 25.0%
! ACAGCTAATATCTTAATGTT+AGG - chr2_1:69597876-69597895 None:intergenic 25.0%
!! CTCATTTGTTAAGAGAAATT+TGG + chr2_1:69597977-69597996 Msa0221040:intron 25.0%
! TTAAGAGAAATTTGGTATCT+TGG + chr2_1:69597985-69598004 Msa0221040:intron 25.0%
! AAATTCTTCGGAAAACATAT+CGG - chr2_1:69598119-69598138 None:intergenic 25.0%
!!! CATATGCAAGAATTTTTCAA+AGG - chr2_1:69598189-69598208 None:intergenic 25.0%
! TACAAACATTCTACAATTCA+AGG + chr2_1:69598223-69598242 Msa0221040:intron 25.0%
!!! TCTATTTTTTAAACAGTCTG+AGG + chr2_1:69598571-69598590 Msa0221040:intron 25.0%
! TTGATTTATAACTAACAACC+AGG - chr2_1:69598915-69598934 None:intergenic 25.0%
! TTGCATAAATCAGTATAGAT+AGG - chr2_1:69598969-69598988 None:intergenic 25.0%
AAGATAACCTTGCAGAAAAA+GGG - chr2_1:69595846-69595865 None:intergenic 30.0%
CATTCCATGTAAGAAATCAA+AGG + chr2_1:69595984-69596003 Msa0221040:intron 30.0%
AGAAGTAGAAGAAATAGAAG+TGG + chr2_1:69596299-69596318 Msa0221040:CDS 30.0%
AAAGGAAATGGAAATGGAAA+TGG + chr2_1:69596500-69596519 Msa0221040:CDS 30.0%
GAAGAAGAAATAGAAGAAGA+GGG + chr2_1:69596522-69596541 Msa0221040:CDS 30.0%
AAGAAGAAATAGAAGAAGAG+GGG + chr2_1:69596523-69596542 Msa0221040:CDS 30.0%
GAAGAAATAAAAGTAGAAGG+AGG + chr2_1:69596570-69596589 Msa0221040:CDS 30.0%
TCAAAAGAGAATCAGTTTGA+AGG + chr2_1:69596729-69596748 Msa0221040:CDS 30.0%
!! AAATTCATTATGCGTTGACT+CGG - chr2_1:69596769-69596788 None:intergenic 30.0%
TCAACGCATAATGAATTTGA+TGG + chr2_1:69596771-69596790 Msa0221040:CDS 30.0%
GAAACATCATTAAATCAAGG+TGG - chr2_1:69597204-69597223 None:intergenic 30.0%
GAAATTCTAGATAATCTGCA+AGG + chr2_1:69597343-69597362 Msa0221040:CDS 30.0%
! AGATCCATCAAAAGTTGTTT+TGG + chr2_1:69597372-69597391 Msa0221040:intron 30.0%
ACTTCATCTTCATCAAAAGA+AGG - chr2_1:69597637-69597656 None:intergenic 30.0%
! TAACATACCAGAAGCTTTAT+CGG - chr2_1:69597728-69597747 None:intergenic 30.0%
AATTCTTCGGAAAACATATC+GGG - chr2_1:69598118-69598137 None:intergenic 30.0%
TCAAGGATGATAATTGATGA+CGG + chr2_1:69598240-69598259 Msa0221040:intron 30.0%
!!! TTTCGTTTTTTGGTATGAGA+CGG + chr2_1:69598295-69598314 Msa0221040:intron 30.0%
ATAGAACAGCTAAATTGAGA+AGG - chr2_1:69598383-69598402 None:intergenic 30.0%
TAACCAAAACTAAGCAGATT+GGG - chr2_1:69598638-69598657 None:intergenic 30.0%
TTAACCAAAACTAAGCAGAT+TGG - chr2_1:69598639-69598658 None:intergenic 30.0%
!! GTTAATTAGAACTGACTTGA+TGG + chr2_1:69598654-69598673 Msa0221040:intron 30.0%
GTTTCTTTGTGATAAGTTTC+TGG - chr2_1:69598733-69598752 None:intergenic 30.0%
TTGTTGGCATTATATAAGCA+CGG - chr2_1:69598781-69598800 None:intergenic 30.0%
! TTCAATGAAGTCAGTTTTCT+TGG - chr2_1:69598829-69598848 None:intergenic 30.0%
GAATGTGCAAATGAATTAAC+AGG + chr2_1:69598941-69598960 Msa0221040:three_prime_UTR 30.0%
TGCGTCTATATATATCTCAA+AGG + chr2_1:69599082-69599101 Msa0221040:three_prime_UTR 30.0%
!! TTCAATAATGGGTGTTGATG+AGG + chr2_1:69595765-69595784 Msa0221040:exon 35.0%
AGGCTTCTCATAACAAGTTA+GGG + chr2_1:69595785-69595804 Msa0221040:CDS 35.0%
! TTAATGTCCCTTTTTCTGCA+AGG + chr2_1:69595836-69595855 Msa0221040:CDS 35.0%
GAAGATAACCTTGCAGAAAA+AGG - chr2_1:69595847-69595866 None:intergenic 35.0%
TTGATGAATCTGTTCAGAAG+AGG + chr2_1:69595905-69595924 Msa0221040:CDS 35.0%
TGATGAATCTGTTCAGAAGA+GGG + chr2_1:69595906-69595925 Msa0221040:CDS 35.0%
TCCATGTAAGAAATCAAAGG+TGG + chr2_1:69595987-69596006 Msa0221040:intron 35.0%
AGAAGAAGAAGAAGAAGAAG+AGG + chr2_1:69596104-69596123 Msa0221040:CDS 35.0%
AGAAGTGGAAGAAATAGAAG+TGG + chr2_1:69596224-69596243 Msa0221040:CDS 35.0%
AGAAGTGGAAGAAGTAGAAA+TGG + chr2_1:69596314-69596333 Msa0221040:CDS 35.0%
AATGGAAGAAGAAGAAGAAG+AGG + chr2_1:69596332-69596351 Msa0221040:CDS 35.0%
AGAGGAAAAGGAAATGGAAA+TGG + chr2_1:69596494-69596513 Msa0221040:CDS 35.0%
GGAAGAAGAAATAGAAGAAG+AGG + chr2_1:69596521-69596540 Msa0221040:CDS 35.0%
AGAAGAAATAGAAGAAGAGG+GGG + chr2_1:69596524-69596543 Msa0221040:CDS 35.0%
AATAAAAGTAGAAGGAGGAG+AGG + chr2_1:69596575-69596594 Msa0221040:CDS 35.0%
ATAAAAGTAGAAGGAGGAGA+GGG + chr2_1:69596576-69596595 Msa0221040:CDS 35.0%
TTTAGAAAGCCAAGTGAAAG+AGG + chr2_1:69596659-69596678 Msa0221040:CDS 35.0%
GCATATTGAAGTGCAACAAA+AGG + chr2_1:69596698-69596717 Msa0221040:CDS 35.0%
TGAATTTGATGGAGAACTGA+AGG + chr2_1:69596782-69596801 Msa0221040:CDS 35.0%
GCTTCCTAAACTCTTAAGAA+GGG - chr2_1:69596933-69596952 None:intergenic 35.0%
AGCTTCCTAAACTCTTAAGA+AGG - chr2_1:69596934-69596953 None:intergenic 35.0%
TCTCCTAGATTGAAATGCTT+GGG - chr2_1:69597147-69597166 None:intergenic 35.0%
AAACTTCTTCCATCAATGCT+AGG - chr2_1:69597298-69597317 None:intergenic 35.0%
GAATTTCAGTTTCGTCACTT+GGG - chr2_1:69597330-69597349 None:intergenic 35.0%
AGAATTTCAGTTTCGTCACT+TGG - chr2_1:69597331-69597350 None:intergenic 35.0%
CTTACACAAGGTTTGATATG+TGG - chr2_1:69597502-69597521 None:intergenic 35.0%
TGAAACTACTGAAAATTCGG+TGG + chr2_1:69597567-69597586 Msa0221040:CDS 35.0%
AAGATAGCTGTAAAGCTCTT+TGG + chr2_1:69597688-69597707 Msa0221040:CDS 35.0%
!! TGTAAAGCTCTTTGGAATTC+TGG + chr2_1:69597696-69597715 Msa0221040:CDS 35.0%
!! GTAAAGCTCTTTGGAATTCT+GGG + chr2_1:69597697-69597716 Msa0221040:CDS 35.0%
AACAAATGAGACAGAACTGT+TGG - chr2_1:69597967-69597986 None:intergenic 35.0%
ATTCTTCGGAAAACATATCG+GGG - chr2_1:69598117-69598136 None:intergenic 35.0%
! CAAGGATGATAATTGATGAC+GGG + chr2_1:69598241-69598260 Msa0221040:intron 35.0%
!! AAGGATGATAATTGATGACG+GGG + chr2_1:69598242-69598261 Msa0221040:intron 35.0%
! AACTGACTTCATTGAAGTCA+AGG + chr2_1:69598833-69598852 Msa0221040:exon 35.0%
CTAGAGAAGATTCTCAAACA+TGG + chr2_1:69599021-69599040 Msa0221040:three_prime_UTR 35.0%
CATGGTTATCTCAACTTTGT+TGG + chr2_1:69599039-69599058 Msa0221040:three_prime_UTR 35.0%
CGCAAATACAAGATAGAACA+GGG - chr2_1:69599066-69599085 None:intergenic 35.0%
ACGCAAATACAAGATAGAAC+AGG - chr2_1:69599067-69599086 None:intergenic 35.0%
GAGGCTTCTCATAACAAGTT+AGG + chr2_1:69595784-69595803 Msa0221040:CDS 40.0%
TTGTCGTCAAGACTCCAAAT+CGG + chr2_1:69595810-69595829 Msa0221040:CDS 40.0%
TCTCAGCACATTCAACTTTG+AGG - chr2_1:69595869-69595888 None:intergenic 40.0%
CTACTACAATGTCAGCTAAG+AGG + chr2_1:69595932-69595951 Msa0221040:CDS 40.0%
! GTCTTTTGTTGATGCTGACA+AGG + chr2_1:69595954-69595973 Msa0221040:intron 40.0%
! GCCACCTTTGATTTCTTACA+TGG - chr2_1:69595991-69596010 None:intergenic 40.0%
GTGGCTATAGAAAGCAAACA+AGG + chr2_1:69596006-69596025 Msa0221040:CDS 40.0%
AAGCAAACAAGGAGAAGAAG+TGG + chr2_1:69596017-69596036 Msa0221040:CDS 40.0%
AGTGGAAGTGGAAGAAGAAA+TGG + chr2_1:69596035-69596054 Msa0221040:CDS 40.0%
GGAAGAAGAAATGGAAGAAG+TGG + chr2_1:69596044-69596063 Msa0221040:CDS 40.0%
AGAAGTGGAAGAAGAAGAAG+AGG + chr2_1:69596059-69596078 Msa0221040:CDS 40.0%
AGAAGAAGAAGAAGAGGAAG+TGG + chr2_1:69596119-69596138 Msa0221040:CDS 40.0%
AGAAGTGGAAGAAGAAGAAG+AGG + chr2_1:69596059-69596078 Msa0221040:CDS 40.0%
AGAAGTGGAAGAAGAAGAAG+AGG + chr2_1:69596059-69596078 Msa0221040:CDS 40.0%
AGAAGTGGAAGAAGAAGAAG+AGG + chr2_1:69596059-69596078 Msa0221040:CDS 40.0%
AGAAGAAGAAGAAGAGGAAG+TGG + chr2_1:69596119-69596138 Msa0221040:CDS 40.0%
AGTGGAAGAAGAAGAAGAAG+AGG + chr2_1:69596098-69596117 Msa0221040:CDS 40.0%
AGAAGAAGAAGAAGAGGAAG+TGG + chr2_1:69596119-69596138 Msa0221040:CDS 40.0%
GGAAGAAGAAGTAGTTGAAG+TGG + chr2_1:69596410-69596429 Msa0221040:CDS 40.0%
TGAAGTGGAAGAAGAAGAAG+AGG + chr2_1:69596425-69596444 Msa0221040:CDS 40.0%
AGTGGAAGAAGAAGTTGAAG+TGG + chr2_1:69596449-69596468 Msa0221040:CDS 40.0%
TGAAGTGGAAGAAGAAGAAG+TGG + chr2_1:69596425-69596444 Msa0221040:CDS 40.0%
AGACGAAGAGGAAAAGGAAA+TGG + chr2_1:69596488-69596507 Msa0221040:CDS 40.0%
GGAGAATTTGAAGGAGTAGA+AGG + chr2_1:69596597-69596616 Msa0221040:CDS 40.0%
GAATTTGAAGGAGTAGAAGG+AGG + chr2_1:69596600-69596619 Msa0221040:CDS 40.0%
TTGTACCAACCTCTTTCACT+TGG - chr2_1:69596671-69596690 None:intergenic 40.0%
TCAGTTTGAAGGAGAAGTGA+AGG + chr2_1:69596740-69596759 Msa0221040:CDS 40.0%
! ACTCTTAAGAAGGGCGTAAA+AGG - chr2_1:69596924-69596943 None:intergenic 40.0%
TACGCCCTTCTTAAGAGTTT+AGG + chr2_1:69596926-69596945 Msa0221040:intron 40.0%
TCACCCAAGCATTTCAATCT+AGG + chr2_1:69597141-69597160 Msa0221040:intron 40.0%
CTCTCCTAGATTGAAATGCT+TGG - chr2_1:69597148-69597167 None:intergenic 40.0%
! CAATCAACTCCTAGCATTGA+TGG + chr2_1:69597286-69597305 Msa0221040:CDS 40.0%
ATCGCTTCTTCTCTTACACA+AGG - chr2_1:69597514-69597533 None:intergenic 40.0%
! AACTACTGAAAATTCGGTGG+CGG + chr2_1:69597570-69597589 Msa0221040:CDS 40.0%
ATATATCATGCACAGACCCT+AGG - chr2_1:69597842-69597861 None:intergenic 40.0%
GCTTCATACACTTGATGCTA+AGG + chr2_1:69597925-69597944 Msa0221040:intron 40.0%
! CACACATAATCCAAGAGTGT+CGG - chr2_1:69598049-69598068 None:intergenic 40.0%
! GTTTCTGGACAAAATCTGCA+AGG - chr2_1:69598718-69598737 None:intergenic 40.0%
AATGCCAACAAGAACCAAAC+CGG + chr2_1:69598790-69598809 Msa0221040:CDS 40.0%
AGGGACATTAACGTCCGATT+TGG - chr2_1:69595827-69595846 None:intergenic 45.0%
ACAAGGAGAAGAAGTGGAAG+TGG + chr2_1:69596023-69596042 Msa0221040:CDS 45.0%
GGAAGAAGAAGAAGAGGAAG+TGG + chr2_1:69596065-69596084 Msa0221040:CDS 45.0%
GGAAGTGGAAGAAGTAGAAG+TGG + chr2_1:69596080-69596099 Msa0221040:CDS 45.0%
AGAAGAAGAGGAAGTGGAAG+AGG + chr2_1:69596071-69596090 Msa0221040:CDS 45.0%
AGTGGAAGAGGAAGTAGAAG+TGG + chr2_1:69596137-69596156 Msa0221040:CDS 45.0%
GGAAGTAGAAGTGGAAGAAG+TGG + chr2_1:69596146-69596165 Msa0221040:CDS 45.0%
AGAAGTGGAAGAAGTGGAAG+AGG + chr2_1:69596152-69596171 Msa0221040:CDS 45.0%
GGAAGTCGAAGAAGAAGAAG+TGG + chr2_1:69596179-69596198 Msa0221040:CDS 45.0%
GGAAGAAGAAGAAGAGGAAG+TGG + chr2_1:69596065-69596084 Msa0221040:CDS 45.0%
AGAAGAGGAAGTGGAAGAAG+TGG + chr2_1:69596074-69596093 Msa0221040:CDS 45.0%
GGAAGAAGAAGAAGAGGAAG+TGG + chr2_1:69596065-69596084 Msa0221040:CDS 45.0%
AGAAGAGGAAGTGGAAGAAG+TGG + chr2_1:69596074-69596093 Msa0221040:CDS 45.0%
GGAAGAAGAAGAAGAGGAAG+TGG + chr2_1:69596065-69596084 Msa0221040:CDS 45.0%
AGAAGAGGAAGTGGAAGAAG+TGG + chr2_1:69596074-69596093 Msa0221040:CDS 45.0%
GGAAGAAGTGGAAGTAGAAG+TGG + chr2_1:69596359-69596378 Msa0221040:CDS 45.0%
AGAAGAAGAGGAAGTGGAAG+TGG + chr2_1:69596071-69596090 Msa0221040:CDS 45.0%
GGAAGAAGAAGAAGAGGAAG+TGG + chr2_1:69596065-69596084 Msa0221040:CDS 45.0%
AGAAGAAGTGGAAGACGAAG+AGG + chr2_1:69596476-69596495 Msa0221040:CDS 45.0%
AGTGGAAGACGAAGAGGAAA+AGG + chr2_1:69596482-69596501 Msa0221040:CDS 45.0%
GAAAGCCAAGTGAAAGAGGT+TGG + chr2_1:69596663-69596682 Msa0221040:CDS 45.0%
! GGTTTTGCCGATAAAGCTTC+TGG + chr2_1:69597718-69597737 Msa0221040:CDS 45.0%
!! TTATGAAGCACCGACACTCT+TGG + chr2_1:69598036-69598055 Msa0221040:intron 45.0%
GATTATGTGTGTCCCCTTGT+CGG + chr2_1:69598058-69598077 Msa0221040:intron 45.0%
! CTGCCCAATCTGCTTAGTTT+TGG + chr2_1:69598632-69598651 Msa0221040:intron 45.0%
!! ATTGCCGGTTTGGTTCTTGT+TGG - chr2_1:69598797-69598816 None:intergenic 45.0%
TCTTGGATGCAAGAGATTGC+CGG - chr2_1:69598812-69598831 None:intergenic 45.0%
GGAAGAAGTGGAAGAGGAAG+AGG + chr2_1:69596158-69596177 Msa0221040:CDS 50.0%
AGAGGGGGAAGAAGATGAAG+TGG + chr2_1:69596539-69596558 Msa0221040:CDS 50.0%
GGAGGAGAGGGAGAATTTGA+AGG + chr2_1:69596588-69596607 Msa0221040:CDS 50.0%
! GAAAATTCGGTGGCGGTTCT+TGG + chr2_1:69597577-69597596 Msa0221040:CDS 50.0%
! ATCGGGGTACTTGTGTGAGT+TGG - chr2_1:69598101-69598120 None:intergenic 50.0%
! GATGCAAGAGATTGCCGGTT+TGG - chr2_1:69598807-69598826 None:intergenic 50.0%
TCATTCCATCTTCACGCACC+TGG + chr2_1:69598894-69598913 Msa0221040:three_prime_UTR 50.0%
AACAACCAGGTGCGTGAAGA+TGG - chr2_1:69598902-69598921 None:intergenic 50.0%
! ACAGAGGCGTATCCGACAAG+GGG - chr2_1:69598073-69598092 None:intergenic 55.0%
! CACAGAGGCGTATCCGACAA+GGG - chr2_1:69598074-69598093 None:intergenic 55.0%
! ACACAGAGGCGTATCCGACA+AGG - chr2_1:69598075-69598094 None:intergenic 55.0%
TGTCGGATACGCCTCTGTGT+CGG + chr2_1:69598075-69598094 Msa0221040:intron 55.0%
CCAAGACTCTGCAGTCTGCA+TGG - chr2_1:69598518-69598537 None:intergenic 55.0%
CCATGCAGACTGCAGAGTCT+TGG + chr2_1:69598515-69598534 Msa0221040:intron 55.0%
! GTGTGAGTTGGCCGACACAG+AGG - chr2_1:69598089-69598108 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 69595765 69599105 69595765 ID=Msa0221040;Name=Msa0221040
chr2_1 mRNA 69595765 69599105 69595765 ID=Msa0221040-mRNA-1;Parent=Msa0221040;Name=Msa0221040-mRNA-1;_AED=0.16;_eAED=0.29;_QI=7|0.4|0.16|1|0.2|0|6|267|532
chr2_1 exon 69595765 69595960 69595765 ID=Msa0221040-mRNA-1:exon:19718;Parent=Msa0221040-mRNA-1
chr2_1 exon 69596006 69596870 69596006 ID=Msa0221040-mRNA-1:exon:19719;Parent=Msa0221040-mRNA-1
chr2_1 exon 69597281 69597384 69597281 ID=Msa0221040-mRNA-1:exon:19720;Parent=Msa0221040-mRNA-1
chr2_1 exon 69597406 69597654 69597406 ID=Msa0221040-mRNA-1:exon:19721;Parent=Msa0221040-mRNA-1
chr2_1 exon 69597664 69597739 69597664 ID=Msa0221040-mRNA-1:exon:19722;Parent=Msa0221040-mRNA-1
chr2_1 exon 69598723 69599105 69598723 ID=Msa0221040-mRNA-1:exon:19723;Parent=Msa0221040-mRNA-1
chr2_1 five_prime_UTR 69595765 69595771 69595765 ID=Msa0221040-mRNA-1:five_prime_utr;Parent=Msa0221040-mRNA-1
chr2_1 CDS 69595772 69595960 69595772 ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1
chr2_1 CDS 69596006 69596870 69596006 ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1
chr2_1 CDS 69597281 69597384 69597281 ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1
chr2_1 CDS 69597406 69597654 69597406 ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1
chr2_1 CDS 69597664 69597739 69597664 ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1
chr2_1 CDS 69598723 69598838 69598723 ID=Msa0221040-mRNA-1:cds;Parent=Msa0221040-mRNA-1
chr2_1 three_prime_UTR 69598839 69599105 69598839 ID=Msa0221040-mRNA-1:three_prime_utr;Parent=Msa0221040-mRNA-1
Gene Sequence

>Msa0221040

ATGGGTGTTGATGAGGCTTCTCATAACAAGTTAGGGTTTTGTCGTCAAGACTCCAAATCGGACGTTAATGTCCCTTTTTCTGCAAGGTTATCTTCCTCAAAGTTGAATGTGCTGAGAAAATGTAGCAGTAACTTTGATGAATCTGTTCAGAAGAGGGATACTACTACAATGTCAGCTAAGAGGTCTTTTGTGGCTATAGAAAGCAAACAAGGAGAAGAAGTGGAAGTGGAAGAAGAAATGGAAGAAGTGGAAGAAGAAGAAGAGGAAGTGGAAGAAGTAGAAGTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGTGGAAGAGGAAGTAGAAGTGGAAGAAGTGGAAGAGGAAGAGGAAGTCGAAGAAGAAGAAGTGGAAGAAGAAGAAGAGGAAGTGGAAGAAGTGGAAGAAATAGAAGTGGAAGAAGAAGAAGAGGAAGTGGAAGAAGTGGAAGAAGAAGAAGAGGAAGTGGAAGAAGTAGAAGAAATAGAAGTGGAAGAAGTAGAAATGGAAGAAGAAGAAGAAGAGGAAGTGGAAGAAGTGGAAGTAGAAGTGGAAGAAGAAGAAGAAGAGGAAGTGGAAGTGGAAGAAGAAGTAGTTGAAGTGGAAGAAGAAGAAGAGGAAGTGGAAGAAGAAGTTGAAGTGGAAGAAGAAGAAGTGGAAGACGAAGAGGAAAAGGAAATGGAAATGGAAATGGAAGAAGAAATAGAAGAAGAGGGGGAAGAAGATGAAGTGGAAGAAGTAGAAGAAATAAAAGTAGAAGGAGGAGAGGGAGAATTTGAAGGAGTAGAAGGAGGACAAGAAGTAATAGAAGAAAAAGAAGAGGAAAAGCATTTAGAAAGCCAAGTGAAAGAGGTTGGTACAAAAAAAGAGCATATTGAAGTGCAACAAAAGGAGCTCAAATCAAAAGAGAATCAGTTTGAAGGAGAAGTGAAGGTTGCCGAGTCAACGCATAATGAATTTGATGGAGAACTGAAGGAGATTGAGTTAAGAGAGAATCAATATAAAGCATTACTAAAATCATTTGAAGAGGAAATTAATTCAGATGATCAATCAACTCCTAGCATTGATGGAAGAAGTTTGCAGTTGCTCCCAAGTGACGAAACTGAAATTCTAGATAATCTGCAAGGATTATCAGATCCATCAAAAAATCCCATTATTCAAAAGTATAAGATGGGAGACAATGCTGTAATTATTGATGAAAGAGACATTCTTCTGCTCGAACAATTAATGAGAATCTCACCACATATCAAACCTTGTGTAAGAGAAGAAGCGATGAAGCTAGCACTTAAGTTGAAATCTTTTATAAGTGAAACTACTGAAAATTCGGTGGCGGTTCTTGGTTTTCTACTCCTTCTATCAATTTATAAATTGGCTCCTTCTTTTGATGAAGATGAACTTTTTGGGTTTGCTGCTCAGCACAAGATAGCTGTAAAGCTCTTTGGAATTCTGGGTTTTGCCGATAAAGCTTCTGATTTTGTCCAGAAACTTATCACAAAGAAACAAAATATTGAAGCTGCTAGATTCATCCGTGCTTATATAATGCCAACAAGAACCAAACCGGCAATCTCTTGCATCCAAGAAAACTGA

Protein sequence

>Msa0221040

MGVDEASHNKLGFCRQDSKSDVNVPFSARLSSSKLNVLRKCSSNFDESVQKRDTTTMSAKRSFVAIESKQGEEVEVEEEMEEVEEEEEEVEEVEVEEEEEEEEEEEEVEEEVEVEEVEEEEEVEEEEVEEEEEEVEEVEEIEVEEEEEEVEEVEEEEEEVEEVEEIEVEEVEMEEEEEEEVEEVEVEVEEEEEEEVEVEEEVVEVEEEEEEVEEEVEVEEEEVEDEEEKEMEMEMEEEIEEEGEEDEVEEVEEIKVEGGEGEFEGVEGGQEVIEEKEEEKHLESQVKEVGTKKEHIEVQQKELKSKENQFEGEVKVAESTHNEFDGELKEIELRENQYKALLKSFEEEINSDDQSTPSIDGRSLQLLPSDETEILDNLQGLSDPSKNPIIQKYKMGDNAVIIDERDILLLEQLMRISPHIKPCVREEAMKLALKLKSFISETTENSVAVLGFLLLLSIYKLAPSFDEDELFGFAAQHKIAVKLFGILGFADKASDFVQKLITKKQNIEAARFIRAYIMPTRTKPAISCIQEN*