Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262490 | KEH39234.1 | 95.652 | 276 | 7 | 1 | 405 | 675 | 279 | 554 | 4.40e-175 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262490 | sp|Q8IID4|DYHC2_PLAF7 | 29.944 | 177 | 124 | 0 | 213 | 389 | 4107 | 4283 | 4.44e-12 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262490 | A0A072VB28 | 95.652 | 276 | 7 | 1 | 405 | 675 | 279 | 554 | 2.10e-175 | 521 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0221040 | Msa0262490 | 0.855377 | 6.574171e-62 | -8.615850e-47 |
| Msa0262490 | Msa0300370 | 0.837886 | 3.988374e-57 | -8.615850e-47 |
| Msa0262490 | Msa0337660 | 0.904841 | 8.044707e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262490 | MtrunA17_Chr2g0325861 | 85.944 | 249 | 35 | 0 | 427 | 675 | 609 | 857 | 1.91e-141 | 434 |
| Msa0262490 | MtrunA17_Chr2g0280141 | 55.743 | 296 | 113 | 5 | 388 | 666 | 450 | 744 | 1.65e-87 | 291 |
| Msa0262490 | MtrunA17_Chr2g0325711 | 56.391 | 266 | 99 | 2 | 411 | 659 | 491 | 756 | 1.40e-81 | 275 |
| Msa0262490 | MtrunA17_Chr2g0325231 | 57.197 | 264 | 97 | 3 | 409 | 657 | 627 | 889 | 1.63e-79 | 271 |
| Msa0262490 | MtrunA17_Chr2g0325811 | 57.143 | 259 | 91 | 4 | 409 | 659 | 505 | 751 | 1.01e-76 | 262 |
| Msa0262490 | MtrunA17_Chr6g0471251 | 49.153 | 295 | 121 | 4 | 399 | 666 | 401 | 693 | 7.77e-66 | 231 |
| Msa0262490 | MtrunA17_Chr2g0325611 | 45.181 | 332 | 134 | 7 | 389 | 675 | 196 | 524 | 1.13e-63 | 221 |
| Msa0262490 | MtrunA17_Chr2g0325661 | 52.899 | 276 | 103 | 3 | 411 | 659 | 520 | 795 | 1.62e-63 | 226 |
| Msa0262490 | MtrunA17_Chr2g0325701 | 54.656 | 247 | 98 | 3 | 404 | 637 | 344 | 589 | 9.61e-63 | 219 |
| Msa0262490 | MtrunA17_Chr2g0325351 | 34.817 | 629 | 298 | 23 | 121 | 659 | 1 | 607 | 3.80e-62 | 219 |
| Msa0262490 | MtrunA17_Chr2g0325621 | 51.938 | 258 | 113 | 3 | 418 | 666 | 332 | 587 | 8.47e-61 | 215 |
| Msa0262490 | MtrunA17_Chr2g0325291 | 65.537 | 177 | 53 | 2 | 498 | 666 | 1 | 177 | 2.59e-58 | 196 |
| Msa0262490 | MtrunA17_Chr5g0416271 | 44.876 | 283 | 108 | 4 | 405 | 645 | 215 | 491 | 6.30e-57 | 201 |
| Msa0262490 | MtrunA17_Chr5g0434761 | 57.923 | 183 | 69 | 1 | 485 | 659 | 2 | 184 | 8.01e-57 | 193 |
| Msa0262490 | MtrunA17_Chr2g0325321 | 52.239 | 268 | 106 | 5 | 395 | 640 | 494 | 761 | 1.47e-56 | 205 |
| Msa0262490 | MtrunA17_Chr2g0333341 | 34.039 | 567 | 299 | 16 | 132 | 642 | 65 | 612 | 1.68e-52 | 191 |
| Msa0262490 | MtrunA17_Chr2g0325361 | 50.195 | 257 | 107 | 4 | 428 | 664 | 746 | 1001 | 2.07e-51 | 192 |
| Msa0262490 | MtrunA17_Chr2g0332951 | 51.905 | 210 | 85 | 5 | 438 | 637 | 4 | 207 | 1.50e-49 | 172 |
| Msa0262490 | MtrunA17_Chr3g0140591 | 60.606 | 165 | 56 | 2 | 484 | 640 | 9 | 172 | 2.35e-49 | 170 |
| Msa0262490 | MtrunA17_Chr2g0325771 | 62.644 | 174 | 61 | 2 | 466 | 637 | 1 | 172 | 2.66e-49 | 170 |
| Msa0262490 | MtrunA17_Chr2g0325631 | 56.284 | 183 | 72 | 1 | 485 | 659 | 2 | 184 | 4.34e-43 | 156 |
| Msa0262490 | MtrunA17_Chr2g0332961 | 53.933 | 178 | 67 | 4 | 434 | 610 | 190 | 353 | 4.90e-41 | 153 |
| Msa0262490 | MtrunA17_Chr2g0325331 | 58.278 | 151 | 55 | 1 | 486 | 628 | 3 | 153 | 1.34e-37 | 137 |
| Msa0262490 | MtrunA17_Chr8g0361651 | 43.210 | 243 | 118 | 6 | 433 | 659 | 86 | 324 | 1.56e-33 | 134 |
| Msa0262490 | MtrunA17_Chr4g0044221 | 36.149 | 296 | 155 | 10 | 306 | 577 | 11 | 296 | 1.87e-31 | 125 |
| Msa0262490 | MtrunA17_Chr2g0325241 | 31.757 | 444 | 217 | 16 | 145 | 562 | 41 | 424 | 1.32e-29 | 122 |
| Msa0262490 | MtrunA17_Chr4g0024061 | 40.217 | 184 | 75 | 4 | 488 | 666 | 425 | 578 | 1.34e-26 | 115 |
| Msa0262490 | MtrunA17_Chr7g0235921 | 61.538 | 104 | 39 | 1 | 554 | 657 | 1 | 103 | 1.04e-20 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262490 | AT5G27220.4 | 31.818 | 242 | 144 | 6 | 410 | 636 | 567 | 802 | 1.31e-14 | 78.2 |
| Msa0262490 | AT5G27220.2 | 31.818 | 242 | 144 | 6 | 410 | 636 | 567 | 802 | 1.31e-14 | 78.2 |
| Msa0262490 | AT5G27220.1 | 31.818 | 242 | 144 | 6 | 410 | 636 | 567 | 802 | 1.61e-14 | 78.2 |
| Msa0262490 | AT5G27220.3 | 31.818 | 242 | 144 | 6 | 410 | 636 | 567 | 802 | 1.61e-14 | 78.2 |
Find 144 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAGACGGGGCCGTGAATT+TGG | 0.131664 | 2_2:+61468383 | Msa0262490:CDS |
| TGTAAAGCTCTTTGGAATTC+TGG | 0.161876 | 2_2:+61470832 | Msa0262490:CDS |
| GTTTCTTTGTGATAAGTTTC+TGG | 0.166574 | 2_2:-61471866 | None:intergenic |
| CCTTCTATCAATTTATAAAT+TGG | 0.166885 | 2_2:+61470745 | Msa0262490:CDS |
| GATGATAACCTTGCAGAAAA+AGG | 0.276117 | 2_2:-61468991 | None:intergenic |
| AACTTCGGGAGCAAGTTATT+TGG | 0.284703 | 2_2:+61468430 | Msa0262490:CDS |
| TTTGAAGAGGAAATTAATTC+AGG | 0.287569 | 2_2:+61469987 | Msa0262490:CDS |
| AGATCCATCAAAAGTTGTTT+TGG | 0.291459 | 2_2:+61470508 | Msa0262490:CDS |
| GAAAATTCGGTGGCGGTTCT+TGG | 0.301553 | 2_2:+61470713 | Msa0262490:CDS |
| GAGGCTTCTCATAACAAGTT+AGG | 0.309524 | 2_2:+61468931 | Msa0262490:CDS |
| AAGATAGCTGTAAAGCTCTT+TGG | 0.333191 | 2_2:+61470824 | Msa0262490:CDS |
| AGTGGAAGTGGAAGAAGAAA+TGG | 0.345871 | 2_2:+61469182 | Msa0262490:CDS |
| TAACATACCAGAAGCTTTAT+CGG | 0.346500 | 2_2:-61470861 | None:intergenic |
| GGAGACGGGGCCGTGAATTT+GGG | 0.349740 | 2_2:+61468384 | Msa0262490:CDS |
| AGGGACATTAACGTCCGATT+TGG | 0.354143 | 2_2:-61468971 | None:intergenic |
| GCAGCCAAGCGAGGAACTTC+GGG | 0.356319 | 2_2:+61468416 | Msa0262490:CDS |
| CCAATTTATAAATTGATAGA+AGG | 0.362503 | 2_2:-61470745 | None:intergenic |
| GATGCAAGAGATTGCCGGTT+TGG | 0.364990 | 2_2:-61471940 | None:intergenic |
| GGAGAATTTGAAGGAGTAGA+AGG | 0.365713 | 2_2:+61469735 | Msa0262490:CDS |
| TATGTATGTAGTTCAATAAT+GGG | 0.368573 | 2_2:+61468901 | Msa0262490:intron |
| TTATGTATGTAGTTCAATAA+TGG | 0.374855 | 2_2:+61468900 | Msa0262490:intron |
| AGTGGAAGACGAAGAGGAAA+AGG | 0.375109 | 2_2:+61469620 | Msa0262490:CDS |
| GTAGAAGAAATAAAAGTAGA+AGG | 0.379943 | 2_2:+61469705 | Msa0262490:CDS |
| GTAAAGCTCTTTGGAATTCT+GGG | 0.382744 | 2_2:+61470833 | Msa0262490:CDS |
| AAGTGAAACTACTGAAAATT+CGG | 0.382904 | 2_2:+61470700 | Msa0262490:CDS |
| TCCATCGCAGCTTGCTTCTA+CGG | 0.383548 | 2_2:+61468584 | Msa0262490:CDS |
| CATGGTTATCTCAACTTTGT+TGG | 0.384283 | 2_2:+61472175 | Msa0262490:three_prime_UTR |
| GAATGTGCAAATGAATTAAC+AGG | 0.384814 | 2_2:+61472077 | Msa0262490:three_prime_UTR |
| AGAAGAAGAGGAAGTGGAAG+TGG | 0.384863 | 2_2:+61469527 | Msa0262490:CDS |
| CAATCAACTCCTAGCATTGA+TGG | 0.387383 | 2_2:+61470422 | Msa0262490:CDS |
| AGAAGAAGAGGAAGTGGAAG+AGG | 0.394857 | 2_2:+61469263 | Msa0262490:CDS |
| AGAATTTCAGTTTCGTCACT+TGG | 0.405145 | 2_2:-61470464 | None:intergenic |
| TCCCAGCACATTCAACTTTG+AGG | 0.406036 | 2_2:-61469013 | None:intergenic |
| GGAAGAAGTGGAAGAGGAAG+AGG | 0.410927 | 2_2:+61469296 | Msa0262490:CDS |
| AGAGGAAAAGGAAATGGAAA+TGG | 0.411493 | 2_2:+61469632 | Msa0262490:CDS |
| GGAAGAAGAAGAAGAGGAAG+TGG | 0.413038 | 2_2:+61469212 | Msa0262490:CDS |
| GGAAGAAGAAGAAGAGGAAG+TGG | 0.413038 | 2_2:+61469338 | Msa0262490:CDS |
| GGAAGAAGAAGAAGAGGAAG+TGG | 0.413038 | 2_2:+61469383 | Msa0262490:CDS |
| GGAAGAAGAAGAAGAGGAAG+TGG | 0.413038 | 2_2:+61469413 | Msa0262490:CDS |
| GGAAGAAGAAGAAGAGGAAG+TGG | 0.413038 | 2_2:+61469569 | Msa0262490:CDS |
| AGAAGTGGAAGAAGTGGAAG+AGG | 0.418870 | 2_2:+61469290 | Msa0262490:CDS |
| AAAGGAAATGGAAATGGAAA+TGG | 0.419282 | 2_2:+61469638 | Msa0262490:CDS |
| ATCCTCAAAGTTGAATGTGC+TGG | 0.419304 | 2_2:+61469011 | Msa0262490:CDS |
| TGCTCCCGAAGTTCCTCGCT+TGG | 0.422033 | 2_2:-61468420 | None:intergenic |
| AGAAGAGGAAGTGGAAGAAG+TGG | 0.422635 | 2_2:+61469347 | Msa0262490:CDS |
| AGAAGAGGAAGTGGAAGAAG+TGG | 0.422635 | 2_2:+61469392 | Msa0262490:CDS |
| AGAAGAGGAAGTGGAAGAAG+TGG | 0.422635 | 2_2:+61469485 | Msa0262490:CDS |
| TGCAGCCAAGCGAGGAACTT+CGG | 0.425669 | 2_2:+61468415 | Msa0262490:CDS |
| TCTTGGATGCAAGAGATTGC+CGG | 0.428413 | 2_2:-61471945 | None:intergenic |
| ACGCAAATACAAGATAGAAC+AGG | 0.435749 | 2_2:-61472200 | None:intergenic |
| TCAACGCATAATGAATTTGA+TGG | 0.437221 | 2_2:+61469909 | Msa0262490:CDS |
| AGACGAAGAGGAAAAGGAAA+TGG | 0.444103 | 2_2:+61469626 | Msa0262490:CDS |
| TTGCATAAATCAGTATAGAT+AGG | 0.444333 | 2_2:-61472102 | None:intergenic |
| AGGCTTCTCATAACAAGTTA+GGG | 0.449446 | 2_2:+61468932 | Msa0262490:CDS |
| AATAAAAGTAGAAGGAGGAG+AGG | 0.449522 | 2_2:+61469713 | Msa0262490:CDS |
| CTTACACAAGGTTTGATATG+TGG | 0.452687 | 2_2:-61470635 | None:intergenic |
| GGAAGTAGAAGTGGAAGAAG+TGG | 0.455374 | 2_2:+61469284 | Msa0262490:CDS |
| CACACTTACGCACGGGAGAC+GGG | 0.456714 | 2_2:+61468370 | Msa0262490:CDS |
| AACAACCAGGTGCGTGAAGA+TGG | 0.458367 | 2_2:-61472035 | None:intergenic |
| TCAAAAGAGAATCAGTTTGA+AGG | 0.460401 | 2_2:+61469867 | Msa0262490:CDS |
| GGAAGAAGAAATGGAAGAAG+TGG | 0.462448 | 2_2:+61469191 | Msa0262490:CDS |
| CCATCGCAGCTTGCTTCTAC+GGG | 0.469460 | 2_2:+61468585 | Msa0262490:CDS |
| GGAAGTGGAAGAAGTAGAAG+TGG | 0.469769 | 2_2:+61469227 | Msa0262490:CDS |
| GGAGGAGAGGGAGAATTTGA+AGG | 0.470561 | 2_2:+61469726 | Msa0262490:CDS |
| TGAAGTGGAAGAAGAAGAAG+TGG | 0.471078 | 2_2:+61469602 | Msa0262490:CDS |
| TAGCATTATGCACGCAGAAA+AGG | 0.473726 | 2_2:-61468682 | None:intergenic |
| AGTGGAAGAAGAAGTTGAAG+TGG | 0.474405 | 2_2:+61469587 | Msa0262490:CDS |
| AACTGACTTCATTGAAGTCA+AGG | 0.475486 | 2_2:+61471969 | Msa0262490:exon |
| GGAAGTCGAAGAAGAAGAAG+TGG | 0.476810 | 2_2:+61469317 | Msa0262490:CDS |
| AGCAAGTTATTTGGTTGAGT+GGG | 0.477649 | 2_2:+61468439 | Msa0262490:CDS |
| CAACCTCAATCCCAAATTCA+CGG | 0.478015 | 2_2:-61468394 | None:intergenic |
| GGAAGAAGTGGAAGTAGAAG+TGG | 0.480135 | 2_2:+61469497 | Msa0262490:CDS |
| AGAAGTGGAAGAAGAAGAAG+AGG | 0.481072 | 2_2:+61469332 | Msa0262490:CDS |
| CTCCCGTGCGTAAGTGTGAT+AGG | 0.481694 | 2_2:-61468365 | None:intergenic |
| ATTGCCGGTTTGGTTCTTGT+TGG | 0.486279 | 2_2:-61471930 | None:intergenic |
| AGTGGAAGAGGAAGTAGAAG+TGG | 0.488793 | 2_2:+61469275 | Msa0262490:CDS |
| TCAGTTTGAAGGAGAAGTGA+AGG | 0.490782 | 2_2:+61469878 | Msa0262490:CDS |
| GAAGAAGAAATAGAAGAAGA+GGG | 0.492199 | 2_2:+61469660 | Msa0262490:CDS |
| GGAAGAAGAAGTAGTTGAAG+TGG | 0.492338 | 2_2:+61469548 | Msa0262490:CDS |
| CATTATTCAAAAGTATAAGA+TGG | 0.494090 | 2_2:+61470547 | Msa0262490:CDS |
| GGAAGAAGAAATAGAAGAAG+AGG | 0.494875 | 2_2:+61469659 | Msa0262490:CDS |
| TCCTCAAAGTTGAATGTGCT+GGG | 0.494951 | 2_2:+61469012 | Msa0262490:CDS |
| TCATTCCATCTTCACGCACC+TGG | 0.495050 | 2_2:+61472030 | Msa0262490:three_prime_UTR |
| AGAAGTGGAAGAAGAAGAAG+AGG | 0.498523 | 2_2:+61469206 | Msa0262490:CDS |
| AGAAGTGGAAGAAGAAGAAG+AGG | 0.498523 | 2_2:+61469407 | Msa0262490:CDS |
| GGGCCGTGAATTTGGGATTG+AGG | 0.499625 | 2_2:+61468391 | Msa0262490:CDS |
| AGAAGTGGAAGAAGAAGAAG+AGG | 0.501323 | 2_2:+61469377 | Msa0262490:CDS |
| ACAAGGAGAAGAAGTGGAAG+TGG | 0.502081 | 2_2:+61469170 | Msa0262490:CDS |
| TGAAGTGGAAGAAGAAGAAG+AGG | 0.503261 | 2_2:+61469563 | Msa0262490:CDS |
| AGAAGTGGAAGAAGTAGAAG+TGG | 0.504796 | 2_2:+61469452 | Msa0262490:CDS |
| AGAAGAAGTGGAAGACGAAG+AGG | 0.507404 | 2_2:+61469614 | Msa0262490:CDS |
| TTCAATAATGGGTGTTGATG+AGG | 0.508201 | 2_2:+61468912 | Msa0262490:CDS |
| TTGTACCAACCTCCTTCACT+TGG | 0.510898 | 2_2:-61469806 | None:intergenic |
| GAGCAAGTTATTTGGTTGAG+TGG | 0.511309 | 2_2:+61468438 | Msa0262490:CDS |
| AATTGAACTTACGTATGGTA+CGG | 0.513426 | 2_2:+61468340 | None:intergenic |
| AGAAGTAGAAGAAATAGAAG+TGG | 0.513490 | 2_2:+61469437 | Msa0262490:CDS |
| AGCTGCGATGGAAGGTGAAA+CGG | 0.513870 | 2_2:-61468573 | None:intergenic |
| AAGAAGAAATAGAAGAAGAG+GGG | 0.514897 | 2_2:+61469661 | Msa0262490:CDS |
| AAGCAAACAAGGAGAAGAAG+TGG | 0.515254 | 2_2:+61469164 | Msa0262490:CDS |
| CCCGTAGAAGCAAGCTGCGA+TGG | 0.519417 | 2_2:-61468585 | None:intergenic |
| TCACACTTACGCACGGGAGA+CGG | 0.523956 | 2_2:+61468369 | Msa0262490:CDS |
| ATTGAACTTACGTATGGTAC+GGG | 0.527591 | 2_2:+61468341 | None:intergenic |
| GAATTTCAGTTTCGTCACTT+GGG | 0.529088 | 2_2:-61470463 | None:intergenic |
| AGAAGTGGAAGAAATAGAAG+TGG | 0.529168 | 2_2:+61469362 | Msa0262490:CDS |
| ATTACTAAAATCATTTGAAG+AGG | 0.531636 | 2_2:+61469974 | Msa0262490:CDS |
| TTTGTTGGATTTGTAAGGGA+AGG | 0.531926 | 2_2:-61468621 | None:intergenic |
| AATGCCAACAAGAACCAAAC+CGG | 0.535039 | 2_2:+61471926 | Msa0262490:CDS |
| ATAAAAGTAGAAGGAGGAGA+GGG | 0.536602 | 2_2:+61469714 | Msa0262490:CDS |
| CGCAAATACAAGATAGAACA+GGG | 0.541405 | 2_2:-61472199 | None:intergenic |
| TTTGGTCGGATTTGGGAATG+GGG | 0.543177 | 2_2:-61468462 | None:intergenic |
| GCCACCTTTGATTTCTTACA+CGG | 0.543414 | 2_2:-61469135 | None:intergenic |
| TGATGAATCTGTTCAGAAGA+GGG | 0.544231 | 2_2:+61469053 | Msa0262490:CDS |
| GAAGAAATAAAAGTAGAAGG+AGG | 0.544772 | 2_2:+61469708 | Msa0262490:CDS |
| ACTTCATCTTCATCGAAAGA+AGG | 0.546038 | 2_2:-61470770 | None:intergenic |
| TGCGTCTATATATATCTCAA+AGG | 0.546977 | 2_2:+61472218 | Msa0262490:three_prime_UTR |
| TGAATTTGATGGAGAACTGA+AGG | 0.547104 | 2_2:+61469920 | Msa0262490:CDS |
| ATTATTCAAAAGTATAAGAT+GGG | 0.548310 | 2_2:+61470548 | Msa0262490:CDS |
| GAAAGCCAAGTGAAGGAGGT+TGG | 0.549696 | 2_2:+61469801 | Msa0262490:CDS |
| AAATTCATTATGCGTTGACT+CGG | 0.556616 | 2_2:-61469904 | None:intergenic |
| CTGCGTGCATAATGCTACCC+AGG | 0.557014 | 2_2:+61468688 | Msa0262490:CDS |
| CTACTACAATGTCAGCTAAG+AGG | 0.558698 | 2_2:+61469079 | Msa0262490:CDS |
| AGAAGAAATAGAAGAAGAGG+GGG | 0.561401 | 2_2:+61469662 | Msa0262490:CDS |
| TTGTCGTCAAGACTCCAAAT+CGG | 0.570085 | 2_2:+61468957 | Msa0262490:CDS |
| TAGAAGCAAGCTGCGATGGA+AGG | 0.571159 | 2_2:-61468581 | None:intergenic |
| TTTAGAAAGCCAAGTGAAGG+AGG | 0.571587 | 2_2:+61469797 | Msa0262490:CDS |
| GAATTTGAAGGAGTAGAAGG+AGG | 0.578088 | 2_2:+61469738 | Msa0262490:CDS |
| AAACTTCTTCCATCAATGCT+AGG | 0.582757 | 2_2:-61470431 | None:intergenic |
| TTGTTGGCATTATATAAGCA+CGG | 0.583376 | 2_2:-61471914 | None:intergenic |
| TTGATGAATCTGTTCAGAAG+AGG | 0.583428 | 2_2:+61469052 | Msa0262490:CDS |
| TGGAACTTGAAACAAGAAAG+AGG | 0.583989 | 2_2:-61468524 | None:intergenic |
| ATCGCTTCTTCTCTTACACA+AGG | 0.586074 | 2_2:-61470647 | None:intergenic |
| GCATTTAGAAAGCCAAGTGA+AGG | 0.596640 | 2_2:+61469794 | Msa0262490:CDS |
| CTAGAGAAGATTCTCAAACA+TGG | 0.604282 | 2_2:+61472157 | Msa0262490:three_prime_UTR |
| AACTACTGAAAATTCGGTGG+CGG | 0.615837 | 2_2:+61470706 | Msa0262490:CDS |
| GACCTATCACACTTACGCAC+GGG | 0.619832 | 2_2:+61468363 | Msa0262490:CDS |
| ATTGAGGTTGCAGCCAAGCG+AGG | 0.623478 | 2_2:+61468407 | Msa0262490:CDS |
| ACACTTACGCACGGGAGACG+GGG | 0.624405 | 2_2:+61468371 | Msa0262490:CDS |
| GAAATTCTAGATAATCTGCA+AGG | 0.625701 | 2_2:+61470479 | Msa0262490:CDS |
| GTGGCTATAGAAAGCAAACA+AGG | 0.630351 | 2_2:+61469153 | Msa0262490:CDS |
| CATTCCGTGTAAGAAATCAA+AGG | 0.641205 | 2_2:+61469131 | Msa0262490:CDS |
| TTGATTTATAACTAACAACC+AGG | 0.654733 | 2_2:-61472048 | None:intergenic |
| GGACCTATCACACTTACGCA+CGG | 0.677872 | 2_2:+61468362 | Msa0262490:CDS |
| TGAAACTACTGAAAATTCGG+TGG | 0.678096 | 2_2:+61470703 | Msa0262490:CDS |
| TCCGTGTAAGAAATCAAAGG+TGG | 0.686959 | 2_2:+61469134 | Msa0262490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTATATTAACAAACT+AGG | - | chr2_2:61470029-61470048 | None:intergenic | 10.0% |
| !!! | TCTTATTCTTGAAATTTTAA+TGG | - | chr2_2:61468547-61468566 | None:intergenic | 15.0% |
| !!! | ATCTTATACTTTTGAATAAT+GGG | - | chr2_2:61470548-61470567 | None:intergenic | 15.0% |
| !!! | ATTATTCAAAAGTATAAGAT+GGG | + | chr2_2:61470548-61470567 | Msa0262490:CDS | 15.0% |
| !!! | TATGTTATTTTTTCGTTTTT+TGG | + | chr2_2:61471421-61471440 | Msa0262490:intron | 15.0% |
| !! | TTATGTATGTAGTTCAATAA+TGG | + | chr2_2:61468900-61468919 | Msa0262490:intron | 20.0% |
| !! | TATGTATGTAGTTCAATAAT+GGG | + | chr2_2:61468901-61468920 | Msa0262490:intron | 20.0% |
| !! | ATTACTAAAATCATTTGAAG+AGG | + | chr2_2:61469974-61469993 | Msa0262490:CDS | 20.0% |
| !! | ATAGAAACATCATTAAATCA+AGG | - | chr2_2:61470343-61470362 | None:intergenic | 20.0% |
| !!! | CATCTTATACTTTTGAATAA+TGG | - | chr2_2:61470549-61470568 | None:intergenic | 20.0% |
| !!! | CATTATTCAAAAGTATAAGA+TGG | + | chr2_2:61470547-61470566 | Msa0262490:CDS | 20.0% |
| !! | CCAATTTATAAATTGATAGA+AGG | - | chr2_2:61470748-61470767 | None:intergenic | 20.0% |
| !! | CCTTCTATCAATTTATAAAT+TGG | + | chr2_2:61470745-61470764 | Msa0262490:CDS | 20.0% |
| !!! | ATGAAGTTTTAAAGCTTTTT+GGG | + | chr2_2:61470786-61470805 | Msa0262490:CDS | 20.0% |
| !! | AAGAAAATTAGTATAATAGC+TGG | - | chr2_2:61470912-61470931 | None:intergenic | 20.0% |
| !! | AATTTCAACTGATATGTAAT+TGG | + | chr2_2:61471039-61471058 | Msa0262490:intron | 20.0% |
| !!! | TTCTTTTGTTCAAAATTCTT+CGG | - | chr2_2:61471267-61471286 | None:intergenic | 20.0% |
| !!! | ATGTTTTGTTGGATTTGTAA+GGG | - | chr2_2:61468628-61468647 | None:intergenic | 25.0% |
| !!! | AATGTTTTGTTGGATTTGTA+AGG | - | chr2_2:61468629-61468648 | None:intergenic | 25.0% |
| ! | GTAGAAGAAATAAAAGTAGA+AGG | + | chr2_2:61469705-61469724 | Msa0262490:CDS | 25.0% |
| ! | AGTAATAGAAGAAAAAGAAG+AGG | + | chr2_2:61469767-61469786 | Msa0262490:CDS | 25.0% |
| ! | TTTGAAGAGGAAATTAATTC+AGG | + | chr2_2:61469987-61470006 | Msa0262490:CDS | 25.0% |
| !! | GCATTTTATTCTTGTTGAAT+TGG | + | chr2_2:61470111-61470130 | Msa0262490:intron | 25.0% |
| !! | ATATCCAAAACAACTTTTGA+TGG | - | chr2_2:61470515-61470534 | None:intergenic | 25.0% |
| ! | AAGTGAAACTACTGAAAATT+CGG | + | chr2_2:61470700-61470719 | Msa0262490:CDS | 25.0% |
| !!! | GATGAAGTTTTAAAGCTTTT+TGG | + | chr2_2:61470785-61470804 | Msa0262490:CDS | 25.0% |
| !! | ACATCATTTGTTAATATCCT+AGG | + | chr2_2:61470958-61470977 | Msa0262490:intron | 25.0% |
| !! | CATCATTTGTTAATATCCTA+GGG | + | chr2_2:61470959-61470978 | Msa0262490:intron | 25.0% |
| ! | ACAGCTAATATCTTAATGTT+AGG | - | chr2_2:61471012-61471031 | None:intergenic | 25.0% |
| !! | CTCATTTGTTAAGAGAAATT+TGG | + | chr2_2:61471113-61471132 | Msa0262490:intron | 25.0% |
| ! | TTAAGAGAAATTTGGTATCT+TGG | + | chr2_2:61471121-61471140 | Msa0262490:intron | 25.0% |
| ! | AAATTCTTCGGAAAACATAT+CGG | - | chr2_2:61471255-61471274 | None:intergenic | 25.0% |
| !!! | CATATGCAAGAATTTTTCAA+AGG | - | chr2_2:61471325-61471344 | None:intergenic | 25.0% |
| ! | TACAAACATTCTACAATTCA+AGG | + | chr2_2:61471359-61471378 | Msa0262490:intron | 25.0% |
| !!! | TCTATTTTTTAAACAGTCTG+AGG | + | chr2_2:61471707-61471726 | Msa0262490:intron | 25.0% |
| ! | TTGATTTATAACTAACAACC+AGG | - | chr2_2:61472051-61472070 | None:intergenic | 25.0% |
| ! | TTGCATAAATCAGTATAGAT+AGG | - | chr2_2:61472105-61472124 | None:intergenic | 25.0% |
| !! | TTAAAGATCGTCTTTTTGGT+CGG | - | chr2_2:61468479-61468498 | None:intergenic | 30.0% |
| ! | TGAGTTAAAGATCGTCTTTT+TGG | - | chr2_2:61468483-61468502 | None:intergenic | 30.0% |
| ! | AAGACATGAGAATGTTTTGT+TGG | - | chr2_2:61468639-61468658 | None:intergenic | 30.0% |
| TTGAGTCATAAGACAAAACA+AGG | - | chr2_2:61468725-61468744 | None:intergenic | 30.0% | |
| ATGATAACCTTGCAGAAAAA+GGG | - | chr2_2:61468993-61469012 | None:intergenic | 30.0% | |
| AGAAGTAGAAGAAATAGAAG+TGG | + | chr2_2:61469437-61469456 | Msa0262490:CDS | 30.0% | |
| AAAGGAAATGGAAATGGAAA+TGG | + | chr2_2:61469638-61469657 | Msa0262490:CDS | 30.0% | |
| GAAGAAGAAATAGAAGAAGA+GGG | + | chr2_2:61469660-61469679 | Msa0262490:CDS | 30.0% | |
| AAGAAGAAATAGAAGAAGAG+GGG | + | chr2_2:61469661-61469680 | Msa0262490:CDS | 30.0% | |
| GAAGAAATAAAAGTAGAAGG+AGG | + | chr2_2:61469708-61469727 | Msa0262490:CDS | 30.0% | |
| TCAAAAGAGAATCAGTTTGA+AGG | + | chr2_2:61469867-61469886 | Msa0262490:CDS | 30.0% | |
| !! | AAATTCATTATGCGTTGACT+CGG | - | chr2_2:61469907-61469926 | None:intergenic | 30.0% |
| TCAACGCATAATGAATTTGA+TGG | + | chr2_2:61469909-61469928 | Msa0262490:CDS | 30.0% | |
| GAAACATCATTAAATCAAGG+TGG | - | chr2_2:61470340-61470359 | None:intergenic | 30.0% | |
| GAAATTCTAGATAATCTGCA+AGG | + | chr2_2:61470479-61470498 | Msa0262490:CDS | 30.0% | |
| ! | AGATCCATCAAAAGTTGTTT+TGG | + | chr2_2:61470508-61470527 | Msa0262490:CDS | 30.0% |
| ! | TAACATACCAGAAGCTTTAT+CGG | - | chr2_2:61470864-61470883 | None:intergenic | 30.0% |
| AATTCTTCGGAAAACATATC+GGG | - | chr2_2:61471254-61471273 | None:intergenic | 30.0% | |
| TCAAGGATGATAATTGATGA+CGG | + | chr2_2:61471376-61471395 | Msa0262490:intron | 30.0% | |
| !!! | TTTCGTTTTTTGGTATGAGA+CGG | + | chr2_2:61471431-61471450 | Msa0262490:intron | 30.0% |
| ATAGAACAGCTAAATTGAGA+AGG | - | chr2_2:61471519-61471538 | None:intergenic | 30.0% | |
| TAACCAAAACTAAGCAGATT+GGG | - | chr2_2:61471774-61471793 | None:intergenic | 30.0% | |
| TTAACCAAAACTAAGCAGAT+TGG | - | chr2_2:61471775-61471794 | None:intergenic | 30.0% | |
| !! | GTTAATTAGAACTGACTTGA+TGG | + | chr2_2:61471790-61471809 | Msa0262490:intron | 30.0% |
| GTTTCTTTGTGATAAGTTTC+TGG | - | chr2_2:61471869-61471888 | None:intergenic | 30.0% | |
| TTGTTGGCATTATATAAGCA+CGG | - | chr2_2:61471917-61471936 | None:intergenic | 30.0% | |
| ! | TTCAATGAAGTCAGTTTTCT+TGG | - | chr2_2:61471965-61471984 | None:intergenic | 30.0% |
| GAATGTGCAAATGAATTAAC+AGG | + | chr2_2:61472077-61472096 | Msa0262490:three_prime_UTR | 30.0% | |
| TGCGTCTATATATATCTCAA+AGG | + | chr2_2:61472218-61472237 | Msa0262490:three_prime_UTR | 30.0% | |
| AGCAAGTTATTTGGTTGAGT+GGG | + | chr2_2:61468439-61468458 | Msa0262490:CDS | 35.0% | |
| TGGAACTTGAAACAAGAAAG+AGG | - | chr2_2:61468527-61468546 | None:intergenic | 35.0% | |
| TTTGTTGGATTTGTAAGGGA+AGG | - | chr2_2:61468624-61468643 | None:intergenic | 35.0% | |
| ACAAGGAAAAGTGAAAACCT+GGG | - | chr2_2:61468708-61468727 | None:intergenic | 35.0% | |
| AACAAGGAAAAGTGAAAACC+TGG | - | chr2_2:61468709-61468728 | None:intergenic | 35.0% | |
| !! | TTCAATAATGGGTGTTGATG+AGG | + | chr2_2:61468912-61468931 | Msa0262490:CDS | 35.0% |
| AGGCTTCTCATAACAAGTTA+GGG | + | chr2_2:61468932-61468951 | Msa0262490:CDS | 35.0% | |
| ! | TTAATGTCCCTTTTTCTGCA+AGG | + | chr2_2:61468983-61469002 | Msa0262490:CDS | 35.0% |
| GATGATAACCTTGCAGAAAA+AGG | - | chr2_2:61468994-61469013 | None:intergenic | 35.0% | |
| TTGATGAATCTGTTCAGAAG+AGG | + | chr2_2:61469052-61469071 | Msa0262490:CDS | 35.0% | |
| TGATGAATCTGTTCAGAAGA+GGG | + | chr2_2:61469053-61469072 | Msa0262490:CDS | 35.0% | |
| !!! | GTCTTTTGTTGATGATGACA+AGG | + | chr2_2:61469101-61469120 | Msa0262490:CDS | 35.0% |
| CATTCCGTGTAAGAAATCAA+AGG | + | chr2_2:61469131-61469150 | Msa0262490:CDS | 35.0% | |
| AGAAGAAGAAGAAGAAGAAG+AGG | + | chr2_2:61469251-61469270 | Msa0262490:CDS | 35.0% | |
| AGAAGTGGAAGAAATAGAAG+TGG | + | chr2_2:61469362-61469381 | Msa0262490:CDS | 35.0% | |
| AGAGGAAAAGGAAATGGAAA+TGG | + | chr2_2:61469632-61469651 | Msa0262490:CDS | 35.0% | |
| GGAAGAAGAAATAGAAGAAG+AGG | + | chr2_2:61469659-61469678 | Msa0262490:CDS | 35.0% | |
| AGAAGAAATAGAAGAAGAGG+GGG | + | chr2_2:61469662-61469681 | Msa0262490:CDS | 35.0% | |
| AATAAAAGTAGAAGGAGGAG+AGG | + | chr2_2:61469713-61469732 | Msa0262490:CDS | 35.0% | |
| ATAAAAGTAGAAGGAGGAGA+GGG | + | chr2_2:61469714-61469733 | Msa0262490:CDS | 35.0% | |
| !!! | GCATTTTGAAGTGCAACAAA+AGG | + | chr2_2:61469836-61469855 | Msa0262490:CDS | 35.0% |
| TGAATTTGATGGAGAACTGA+AGG | + | chr2_2:61469920-61469939 | Msa0262490:CDS | 35.0% | |
| GCTTCCTAAACTCTTAAGAA+GGG | - | chr2_2:61470071-61470090 | None:intergenic | 35.0% | |
| AGCTTCCTAAACTCTTAAGA+AGG | - | chr2_2:61470072-61470091 | None:intergenic | 35.0% | |
| TCTCCTAGATTGAAATGCTT+GGG | - | chr2_2:61470285-61470304 | None:intergenic | 35.0% | |
| AAACTTCTTCCATCAATGCT+AGG | - | chr2_2:61470434-61470453 | None:intergenic | 35.0% | |
| GAATTTCAGTTTCGTCACTT+GGG | - | chr2_2:61470466-61470485 | None:intergenic | 35.0% | |
| AGAATTTCAGTTTCGTCACT+TGG | - | chr2_2:61470467-61470486 | None:intergenic | 35.0% | |
| CTTACACAAGGTTTGATATG+TGG | - | chr2_2:61470638-61470657 | None:intergenic | 35.0% | |
| TGAAACTACTGAAAATTCGG+TGG | + | chr2_2:61470703-61470722 | Msa0262490:CDS | 35.0% | |
| ACTTCATCTTCATCGAAAGA+AGG | - | chr2_2:61470773-61470792 | None:intergenic | 35.0% | |
| AAGATAGCTGTAAAGCTCTT+TGG | + | chr2_2:61470824-61470843 | Msa0262490:CDS | 35.0% | |
| !! | TGTAAAGCTCTTTGGAATTC+TGG | + | chr2_2:61470832-61470851 | Msa0262490:CDS | 35.0% |
| !! | GTAAAGCTCTTTGGAATTCT+GGG | + | chr2_2:61470833-61470852 | Msa0262490:CDS | 35.0% |
| ATTCTTCGGAAAACATATCG+GGG | - | chr2_2:61471253-61471272 | None:intergenic | 35.0% | |
| ! | CAAGGATGATAATTGATGAC+GGG | + | chr2_2:61471377-61471396 | Msa0262490:intron | 35.0% |
| !! | AAGGATGATAATTGATGACG+GGG | + | chr2_2:61471378-61471397 | Msa0262490:intron | 35.0% |
| ! | AACTGACTTCATTGAAGTCA+AGG | + | chr2_2:61471969-61471988 | Msa0262490:exon | 35.0% |
| CTAGAGAAGATTCTCAAACA+TGG | + | chr2_2:61472157-61472176 | Msa0262490:three_prime_UTR | 35.0% | |
| CATGGTTATCTCAACTTTGT+TGG | + | chr2_2:61472175-61472194 | Msa0262490:three_prime_UTR | 35.0% | |
| CGCAAATACAAGATAGAACA+GGG | - | chr2_2:61472202-61472221 | None:intergenic | 35.0% | |
| ACGCAAATACAAGATAGAAC+AGG | - | chr2_2:61472203-61472222 | None:intergenic | 35.0% | |
| CAACCTCAATCCCAAATTCA+CGG | - | chr2_2:61468397-61468416 | None:intergenic | 40.0% | |
| AACTTCGGGAGCAAGTTATT+TGG | + | chr2_2:61468430-61468449 | Msa0262490:CDS | 40.0% | |
| GAGCAAGTTATTTGGTTGAG+TGG | + | chr2_2:61468438-61468457 | Msa0262490:CDS | 40.0% | |
| ! | TTTTGGTCGGATTTGGGAAT+GGG | - | chr2_2:61468466-61468485 | None:intergenic | 40.0% |
| !! | TTTTTGGTCGGATTTGGGAA+TGG | - | chr2_2:61468467-61468486 | None:intergenic | 40.0% |
| !! | TCGTCTTTTTGGTCGGATTT+GGG | - | chr2_2:61468472-61468491 | None:intergenic | 40.0% |
| !! | ATCGTCTTTTTGGTCGGATT+TGG | - | chr2_2:61468473-61468492 | None:intergenic | 40.0% |
| TAGCATTATGCACGCAGAAA+AGG | - | chr2_2:61468685-61468704 | None:intergenic | 40.0% | |
| GAGGCTTCTCATAACAAGTT+AGG | + | chr2_2:61468931-61468950 | Msa0262490:CDS | 40.0% | |
| TTGTCGTCAAGACTCCAAAT+CGG | + | chr2_2:61468957-61468976 | Msa0262490:CDS | 40.0% | |
| ATCCTCAAAGTTGAATGTGC+TGG | + | chr2_2:61469011-61469030 | Msa0262490:CDS | 40.0% | |
| TCCTCAAAGTTGAATGTGCT+GGG | + | chr2_2:61469012-61469031 | Msa0262490:CDS | 40.0% | |
| CTACTACAATGTCAGCTAAG+AGG | + | chr2_2:61469079-61469098 | Msa0262490:CDS | 40.0% | |
| TCCGTGTAAGAAATCAAAGG+TGG | + | chr2_2:61469134-61469153 | Msa0262490:CDS | 40.0% | |
| ! | GCCACCTTTGATTTCTTACA+CGG | - | chr2_2:61469138-61469157 | None:intergenic | 40.0% |
| GTGGCTATAGAAAGCAAACA+AGG | + | chr2_2:61469153-61469172 | Msa0262490:CDS | 40.0% | |
| AAGCAAACAAGGAGAAGAAG+TGG | + | chr2_2:61469164-61469183 | Msa0262490:CDS | 40.0% | |
| AGTGGAAGTGGAAGAAGAAA+TGG | + | chr2_2:61469182-61469201 | Msa0262490:CDS | 40.0% | |
| GGAAGAAGAAATGGAAGAAG+TGG | + | chr2_2:61469191-61469210 | Msa0262490:CDS | 40.0% | |
| AGAAGTGGAAGAAGAAGAAG+AGG | + | chr2_2:61469206-61469225 | Msa0262490:CDS | 40.0% | |
| AGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_2:61469257-61469276 | Msa0262490:CDS | 40.0% | |
| AGAAGTGGAAGAAGAAGAAG+AGG | + | chr2_2:61469206-61469225 | Msa0262490:CDS | 40.0% | |
| AGAAGTGGAAGAAGAAGAAG+AGG | + | chr2_2:61469206-61469225 | Msa0262490:CDS | 40.0% | |
| AGAAGTGGAAGAAGAAGAAG+AGG | + | chr2_2:61469206-61469225 | Msa0262490:CDS | 40.0% | |
| AGAAGTGGAAGAAGTAGAAG+TGG | + | chr2_2:61469452-61469471 | Msa0262490:CDS | 40.0% | |
| AGTGGAAGAAGAAGAAGAAG+AGG | + | chr2_2:61469245-61469264 | Msa0262490:CDS | 40.0% | |
| AGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_2:61469257-61469276 | Msa0262490:CDS | 40.0% | |
| AGTGGAAGAAGAAGAAGAAG+AGG | + | chr2_2:61469245-61469264 | Msa0262490:CDS | 40.0% | |
| AGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_2:61469257-61469276 | Msa0262490:CDS | 40.0% | |
| GGAAGAAGAAGTAGTTGAAG+TGG | + | chr2_2:61469548-61469567 | Msa0262490:CDS | 40.0% | |
| TGAAGTGGAAGAAGAAGAAG+AGG | + | chr2_2:61469563-61469582 | Msa0262490:CDS | 40.0% | |
| AGTGGAAGAAGAAGTTGAAG+TGG | + | chr2_2:61469587-61469606 | Msa0262490:CDS | 40.0% | |
| TGAAGTGGAAGAAGAAGAAG+TGG | + | chr2_2:61469563-61469582 | Msa0262490:CDS | 40.0% | |
| AGACGAAGAGGAAAAGGAAA+TGG | + | chr2_2:61469626-61469645 | Msa0262490:CDS | 40.0% | |
| GGAGAATTTGAAGGAGTAGA+AGG | + | chr2_2:61469735-61469754 | Msa0262490:CDS | 40.0% | |
| GAATTTGAAGGAGTAGAAGG+AGG | + | chr2_2:61469738-61469757 | Msa0262490:CDS | 40.0% | |
| GCATTTAGAAAGCCAAGTGA+AGG | + | chr2_2:61469794-61469813 | Msa0262490:CDS | 40.0% | |
| TTTAGAAAGCCAAGTGAAGG+AGG | + | chr2_2:61469797-61469816 | Msa0262490:CDS | 40.0% | |
| TCAGTTTGAAGGAGAAGTGA+AGG | + | chr2_2:61469878-61469897 | Msa0262490:CDS | 40.0% | |
| ! | ACTCTTAAGAAGGGCGTAAA+AGG | - | chr2_2:61470062-61470081 | None:intergenic | 40.0% |
| TACGCCCTTCTTAAGAGTTT+AGG | + | chr2_2:61470064-61470083 | Msa0262490:intron | 40.0% | |
| TCACCCAAGCATTTCAATCT+AGG | + | chr2_2:61470279-61470298 | Msa0262490:intron | 40.0% | |
| CTCTCCTAGATTGAAATGCT+TGG | - | chr2_2:61470286-61470305 | None:intergenic | 40.0% | |
| ! | CAATCAACTCCTAGCATTGA+TGG | + | chr2_2:61470422-61470441 | Msa0262490:CDS | 40.0% |
| ATCGCTTCTTCTCTTACACA+AGG | - | chr2_2:61470650-61470669 | None:intergenic | 40.0% | |
| ! | AACTACTGAAAATTCGGTGG+CGG | + | chr2_2:61470706-61470725 | Msa0262490:CDS | 40.0% |
| ATATATCATGCACAGACCCT+AGG | - | chr2_2:61470978-61470997 | None:intergenic | 40.0% | |
| GCTTCATACACTTGATGCTA+AGG | + | chr2_2:61471061-61471080 | Msa0262490:intron | 40.0% | |
| AACAAATGAGACAGAACTGC+TGG | - | chr2_2:61471103-61471122 | None:intergenic | 40.0% | |
| ! | CACACATAATCCAAGAGTGT+CGG | - | chr2_2:61471185-61471204 | None:intergenic | 40.0% |
| ! | GTTTCTGGACAAAATCTGCA+AGG | - | chr2_2:61471854-61471873 | None:intergenic | 40.0% |
| AATGCCAACAAGAACCAAAC+CGG | + | chr2_2:61471926-61471945 | Msa0262490:CDS | 40.0% | |
| TTTGGTCGGATTTGGGAATG+GGG | - | chr2_2:61468465-61468484 | None:intergenic | 45.0% | |
| ! | GCTCGAAGCTTCTGTTTTCT+TGG | + | chr2_2:61468745-61468764 | Msa0262490:intron | 45.0% |
| AGGGACATTAACGTCCGATT+TGG | - | chr2_2:61468974-61468993 | None:intergenic | 45.0% | |
| TCCCAGCACATTCAACTTTG+AGG | - | chr2_2:61469016-61469035 | None:intergenic | 45.0% | |
| ACAAGGAGAAGAAGTGGAAG+TGG | + | chr2_2:61469170-61469189 | Msa0262490:CDS | 45.0% | |
| GGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_2:61469212-61469231 | Msa0262490:CDS | 45.0% | |
| GGAAGTGGAAGAAGTAGAAG+TGG | + | chr2_2:61469227-61469246 | Msa0262490:CDS | 45.0% | |
| AGAAGAAGAGGAAGTGGAAG+AGG | + | chr2_2:61469218-61469237 | Msa0262490:CDS | 45.0% | |
| AGTGGAAGAGGAAGTAGAAG+TGG | + | chr2_2:61469275-61469294 | Msa0262490:CDS | 45.0% | |
| GGAAGTAGAAGTGGAAGAAG+TGG | + | chr2_2:61469284-61469303 | Msa0262490:CDS | 45.0% | |
| AGAAGTGGAAGAAGTGGAAG+AGG | + | chr2_2:61469290-61469309 | Msa0262490:CDS | 45.0% | |
| GGAAGTCGAAGAAGAAGAAG+TGG | + | chr2_2:61469317-61469336 | Msa0262490:CDS | 45.0% | |
| GGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_2:61469212-61469231 | Msa0262490:CDS | 45.0% | |
| AGAAGAGGAAGTGGAAGAAG+TGG | + | chr2_2:61469221-61469240 | Msa0262490:CDS | 45.0% | |
| GGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_2:61469212-61469231 | Msa0262490:CDS | 45.0% | |
| AGAAGAGGAAGTGGAAGAAG+TGG | + | chr2_2:61469221-61469240 | Msa0262490:CDS | 45.0% | |
| GGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_2:61469212-61469231 | Msa0262490:CDS | 45.0% | |
| AGAAGAGGAAGTGGAAGAAG+TGG | + | chr2_2:61469221-61469240 | Msa0262490:CDS | 45.0% | |
| GGAAGAAGTGGAAGTAGAAG+TGG | + | chr2_2:61469497-61469516 | Msa0262490:CDS | 45.0% | |
| AGAAGAAGAGGAAGTGGAAG+TGG | + | chr2_2:61469218-61469237 | Msa0262490:CDS | 45.0% | |
| GGAAGAAGAAGAAGAGGAAG+TGG | + | chr2_2:61469212-61469231 | Msa0262490:CDS | 45.0% | |
| AGAAGAAGTGGAAGACGAAG+AGG | + | chr2_2:61469614-61469633 | Msa0262490:CDS | 45.0% | |
| AGTGGAAGACGAAGAGGAAA+AGG | + | chr2_2:61469620-61469639 | Msa0262490:CDS | 45.0% | |
| TTGTACCAACCTCCTTCACT+TGG | - | chr2_2:61469809-61469828 | None:intergenic | 45.0% | |
| ! | GGTTTTGCCGATAAAGCTTC+TGG | + | chr2_2:61470854-61470873 | Msa0262490:CDS | 45.0% |
| !! | TTATGAAGCACCGACACTCT+TGG | + | chr2_2:61471172-61471191 | Msa0262490:intron | 45.0% |
| GATTATGTGTGTCCCCTTGT+CGG | + | chr2_2:61471194-61471213 | Msa0262490:intron | 45.0% | |
| ! | CTGCCCAATCTGCTTAGTTT+TGG | + | chr2_2:61471768-61471787 | Msa0262490:intron | 45.0% |
| !! | ATTGCCGGTTTGGTTCTTGT+TGG | - | chr2_2:61471933-61471952 | None:intergenic | 45.0% |
| TCTTGGATGCAAGAGATTGC+CGG | - | chr2_2:61471948-61471967 | None:intergenic | 45.0% | |
| GGACCTATCACACTTACGCA+CGG | + | chr2_2:61468362-61468381 | Msa0262490:CDS | 50.0% | |
| GACCTATCACACTTACGCAC+GGG | + | chr2_2:61468363-61468382 | Msa0262490:CDS | 50.0% | |
| AGCTGCGATGGAAGGTGAAA+CGG | - | chr2_2:61468576-61468595 | None:intergenic | 50.0% | |
| TAGAAGCAAGCTGCGATGGA+AGG | - | chr2_2:61468584-61468603 | None:intergenic | 50.0% | |
| ! | TCCATCGCAGCTTGCTTCTA+CGG | + | chr2_2:61468584-61468603 | Msa0262490:CDS | 50.0% |
| GGAAGAAGTGGAAGAGGAAG+AGG | + | chr2_2:61469296-61469315 | Msa0262490:CDS | 50.0% | |
| AGAGGGGGAAGAAGATGAAG+TGG | + | chr2_2:61469677-61469696 | Msa0262490:CDS | 50.0% | |
| GGAGGAGAGGGAGAATTTGA+AGG | + | chr2_2:61469726-61469745 | Msa0262490:CDS | 50.0% | |
| GAAAGCCAAGTGAAGGAGGT+TGG | + | chr2_2:61469801-61469820 | Msa0262490:CDS | 50.0% | |
| ! | GAAAATTCGGTGGCGGTTCT+TGG | + | chr2_2:61470713-61470732 | Msa0262490:CDS | 50.0% |
| ! | ATCGGGGTACTTGTGTGAGT+TGG | - | chr2_2:61471237-61471256 | None:intergenic | 50.0% |
| ! | GATGCAAGAGATTGCCGGTT+TGG | - | chr2_2:61471943-61471962 | None:intergenic | 50.0% |
| TCATTCCATCTTCACGCACC+TGG | + | chr2_2:61472030-61472049 | Msa0262490:three_prime_UTR | 50.0% | |
| AACAACCAGGTGCGTGAAGA+TGG | - | chr2_2:61472038-61472057 | None:intergenic | 50.0% | |
| CTCCCGTGCGTAAGTGTGAT+AGG | - | chr2_2:61468368-61468387 | None:intergenic | 55.0% | |
| TCACACTTACGCACGGGAGA+CGG | + | chr2_2:61468369-61468388 | Msa0262490:CDS | 55.0% | |
| ! | GGGCCGTGAATTTGGGATTG+AGG | + | chr2_2:61468391-61468410 | Msa0262490:CDS | 55.0% |
| ATTGAGGTTGCAGCCAAGCG+AGG | + | chr2_2:61468407-61468426 | Msa0262490:CDS | 55.0% | |
| TGCAGCCAAGCGAGGAACTT+CGG | + | chr2_2:61468415-61468434 | Msa0262490:CDS | 55.0% | |
| ! | CCATCGCAGCTTGCTTCTAC+GGG | + | chr2_2:61468585-61468604 | Msa0262490:CDS | 55.0% |
| CTGCGTGCATAATGCTACCC+AGG | + | chr2_2:61468688-61468707 | Msa0262490:CDS | 55.0% | |
| ! | ACAGAGGCGTATCCGACAAG+GGG | - | chr2_2:61471209-61471228 | None:intergenic | 55.0% |
| ! | CACAGAGGCGTATCCGACAA+GGG | - | chr2_2:61471210-61471229 | None:intergenic | 55.0% |
| ! | ACACAGAGGCGTATCCGACA+AGG | - | chr2_2:61471211-61471230 | None:intergenic | 55.0% |
| TGTCGGATACGCCTCTGTGT+CGG | + | chr2_2:61471211-61471230 | Msa0262490:intron | 55.0% | |
| CCAAGACTCTGCAGTCTGCA+TGG | - | chr2_2:61471654-61471673 | None:intergenic | 55.0% | |
| CCATGCAGACTGCAGAGTCT+TGG | + | chr2_2:61471651-61471670 | Msa0262490:intron | 55.0% | |
| CACACTTACGCACGGGAGAC+GGG | + | chr2_2:61468370-61468389 | Msa0262490:CDS | 60.0% | |
| ACACTTACGCACGGGAGACG+GGG | + | chr2_2:61468371-61468390 | Msa0262490:CDS | 60.0% | |
| GGAGACGGGGCCGTGAATTT+GGG | + | chr2_2:61468384-61468403 | Msa0262490:CDS | 60.0% | |
| GCAGCCAAGCGAGGAACTTC+GGG | + | chr2_2:61468416-61468435 | Msa0262490:CDS | 60.0% | |
| TGCTCCCGAAGTTCCTCGCT+TGG | - | chr2_2:61468423-61468442 | None:intergenic | 60.0% | |
| CCCGTAGAAGCAAGCTGCGA+TGG | - | chr2_2:61468588-61468607 | None:intergenic | 60.0% | |
| ! | GTGTGAGTTGGCCGACACAG+AGG | - | chr2_2:61471225-61471244 | None:intergenic | 60.0% |
| GGGAGACGGGGCCGTGAATT+TGG | + | chr2_2:61468383-61468402 | Msa0262490:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 61468354 | 61472241 | 61468354 | ID=Msa0262490;Name=Msa0262490 |
| chr2_2 | mRNA | 61468354 | 61472241 | 61468354 | ID=Msa0262490-mRNA-1;Parent=Msa0262490;Name=Msa0262490-mRNA-1;_AED=0.12;_eAED=0.14;_QI=0|0.66|0.5|1|0.33|0.25|4|267|675 |
| chr2_2 | exon | 61468354 | 61468709 | 61468354 | ID=Msa0262490-mRNA-1:exon:18899;Parent=Msa0262490-mRNA-1 |
| chr2_2 | exon | 61468912 | 61470008 | 61468912 | ID=Msa0262490-mRNA-1:exon:18900;Parent=Msa0262490-mRNA-1 |
| chr2_2 | exon | 61470417 | 61470875 | 61470417 | ID=Msa0262490-mRNA-1:exon:18901;Parent=Msa0262490-mRNA-1 |
| chr2_2 | exon | 61471859 | 61472241 | 61471859 | ID=Msa0262490-mRNA-1:exon:18902;Parent=Msa0262490-mRNA-1 |
| chr2_2 | CDS | 61468354 | 61468709 | 61468354 | ID=Msa0262490-mRNA-1:cds;Parent=Msa0262490-mRNA-1 |
| chr2_2 | CDS | 61468912 | 61470008 | 61468912 | ID=Msa0262490-mRNA-1:cds;Parent=Msa0262490-mRNA-1 |
| chr2_2 | CDS | 61470417 | 61470875 | 61470417 | ID=Msa0262490-mRNA-1:cds;Parent=Msa0262490-mRNA-1 |
| chr2_2 | CDS | 61471859 | 61471974 | 61471859 | ID=Msa0262490-mRNA-1:cds;Parent=Msa0262490-mRNA-1 |
| chr2_2 | three_prime_UTR | 61471975 | 61472241 | 61471975 | ID=Msa0262490-mRNA-1:three_prime_utr;Parent=Msa0262490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
