Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221260 | XP_013465254.1 | 74.329 | 596 | 69 | 8 | 1 | 535 | 2 | 574 | 0.0 | 766 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221260 | A0A072VB92 | 74.329 | 596 | 69 | 8 | 1 | 535 | 2 | 574 | 0.0 | 766 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0221260 | Msa0262920 | 0.867698 | 1.130051e-65 | -8.615850e-47 |
| Msa0221260 | Msa0337850 | 0.833913 | 4.057671e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221260 | MtrunA17_Chr2g0325741 | 71.565 | 313 | 64 | 4 | 1 | 292 | 2 | 310 | 3.25e-137 | 400 |
| Msa0221260 | MtrunA17_Chr2g0325231 | 48.515 | 606 | 192 | 12 | 4 | 516 | 6 | 584 | 1.49e-125 | 389 |
| Msa0221260 | MtrunA17_Chr2g0325231 | 57.771 | 341 | 94 | 8 | 215 | 522 | 389 | 712 | 9.69e-86 | 284 |
| Msa0221260 | MtrunA17_Chr2g0325661 | 42.605 | 622 | 242 | 14 | 1 | 522 | 1 | 607 | 1.32e-110 | 350 |
| Msa0221260 | MtrunA17_Chr2g0325281 | 40.781 | 640 | 192 | 14 | 41 | 532 | 2 | 602 | 3.40e-102 | 320 |
| Msa0221260 | MtrunA17_Chr2g0325861 | 40.548 | 693 | 213 | 17 | 1 | 522 | 2 | 666 | 4.35e-100 | 322 |
| Msa0221260 | MtrunA17_Chr2g0325701 | 44.324 | 555 | 172 | 17 | 4 | 537 | 5 | 443 | 6.28e-99 | 311 |
| Msa0221260 | MtrunA17_Chr2g0325691 | 47.753 | 534 | 171 | 13 | 4 | 510 | 5 | 457 | 1.26e-97 | 311 |
| Msa0221260 | MtrunA17_Chr2g0325691 | 48.931 | 421 | 160 | 10 | 149 | 527 | 321 | 728 | 2.17e-83 | 274 |
| Msa0221260 | MtrunA17_Chr2g0325691 | 38.158 | 304 | 151 | 7 | 227 | 516 | 113 | 393 | 1.80e-17 | 85.9 |
| Msa0221260 | MtrunA17_Chr2g0325781 | 54.769 | 325 | 93 | 7 | 1 | 300 | 1 | 296 | 1.72e-96 | 295 |
| Msa0221260 | MtrunA17_Chr2g0325781 | 34.426 | 244 | 106 | 6 | 235 | 463 | 99 | 303 | 1.41e-14 | 74.7 |
| Msa0221260 | MtrunA17_Chr2g0325761 | 42.339 | 607 | 238 | 15 | 1 | 511 | 1 | 591 | 8.66e-94 | 301 |
| Msa0221260 | MtrunA17_Chr7g0235901 | 54.070 | 344 | 100 | 6 | 95 | 413 | 1 | 311 | 3.59e-91 | 282 |
| Msa0221260 | MtrunA17_Chr7g0235901 | 40.996 | 261 | 127 | 5 | 263 | 497 | 52 | 311 | 1.30e-31 | 124 |
| Msa0221260 | MtrunA17_Chr7g0235901 | 36.364 | 176 | 89 | 3 | 355 | 510 | 110 | 282 | 7.67e-14 | 72.8 |
| Msa0221260 | MtrunA17_Chr2g0325221 | 38.412 | 617 | 264 | 13 | 1 | 521 | 1 | 597 | 3.50e-90 | 291 |
| Msa0221260 | MtrunA17_Chr2g0325321 | 39.160 | 595 | 194 | 13 | 45 | 491 | 8 | 582 | 6.20e-87 | 284 |
| Msa0221260 | MtrunA17_Chr2g0325321 | 44.828 | 232 | 126 | 1 | 231 | 462 | 366 | 595 | 2.17e-38 | 150 |
| Msa0221260 | MtrunA17_Chr2g0325811 | 39.833 | 600 | 245 | 15 | 1 | 513 | 1 | 571 | 7.81e-85 | 280 |
| Msa0221260 | MtrunA17_Chr2g0325711 | 38.210 | 581 | 254 | 13 | 50 | 543 | 26 | 588 | 1.81e-81 | 271 |
| Msa0221260 | MtrunA17_Chr2g0325721 | 39.927 | 546 | 254 | 12 | 1 | 517 | 1 | 501 | 3.03e-81 | 263 |
| Msa0221260 | MtrunA17_Chr2g0325351 | 39.811 | 530 | 155 | 12 | 1 | 496 | 2 | 401 | 7.08e-76 | 253 |
| Msa0221260 | MtrunA17_Chr2g0325351 | 30.864 | 324 | 155 | 7 | 194 | 517 | 98 | 352 | 4.49e-17 | 84.7 |
| Msa0221260 | MtrunA17_Chr2g0325641 | 55.960 | 302 | 110 | 5 | 235 | 536 | 47 | 325 | 1.10e-71 | 232 |
| Msa0221260 | MtrunA17_Chr2g0325641 | 43.671 | 158 | 74 | 4 | 208 | 357 | 157 | 307 | 1.58e-17 | 84.0 |
| Msa0221260 | MtrunA17_Chr2g0325641 | 38.095 | 147 | 84 | 1 | 353 | 499 | 2 | 141 | 2.91e-12 | 68.2 |
| Msa0221260 | MtrunA17_Chr2g0325361 | 38.998 | 559 | 213 | 14 | 50 | 501 | 13 | 550 | 9.39e-70 | 242 |
| Msa0221260 | MtrunA17_Chr2g0325361 | 41.009 | 456 | 147 | 9 | 151 | 498 | 365 | 806 | 2.53e-62 | 221 |
| Msa0221260 | MtrunA17_Chr2g0325361 | 47.710 | 262 | 108 | 6 | 209 | 448 | 558 | 812 | 9.27e-41 | 158 |
| Msa0221260 | MtrunA17_Chr2g0325621 | 38.809 | 487 | 186 | 10 | 47 | 522 | 13 | 398 | 8.99e-68 | 231 |
| Msa0221260 | MtrunA17_Chr6g0471251 | 38.850 | 574 | 260 | 14 | 1 | 539 | 2 | 519 | 1.45e-66 | 230 |
| Msa0221260 | MtrunA17_Chr2g0325751 | 78.205 | 156 | 25 | 2 | 382 | 535 | 2 | 150 | 5.99e-65 | 208 |
| Msa0221260 | MtrunA17_Chr2g0325751 | 42.748 | 131 | 52 | 1 | 273 | 403 | 7 | 114 | 2.80e-16 | 76.3 |
| Msa0221260 | MtrunA17_Chr2g0325751 | 46.903 | 113 | 51 | 2 | 245 | 350 | 7 | 117 | 1.33e-13 | 68.6 |
| Msa0221260 | MtrunA17_Chr5g0416271 | 49.062 | 320 | 118 | 8 | 70 | 363 | 17 | 317 | 2.83e-62 | 212 |
| Msa0221260 | MtrunA17_Chr5g0416271 | 44.253 | 174 | 97 | 0 | 344 | 517 | 158 | 331 | 1.22e-24 | 107 |
| Msa0221260 | MtrunA17_Chr5g0434751 | 52.431 | 288 | 121 | 3 | 245 | 525 | 1 | 279 | 4.97e-57 | 192 |
| Msa0221260 | MtrunA17_Chr2g0325651 | 41.551 | 361 | 161 | 11 | 62 | 393 | 47 | 386 | 2.61e-53 | 186 |
| Msa0221260 | MtrunA17_Chr2g0325651 | 37.248 | 298 | 133 | 10 | 230 | 501 | 113 | 382 | 4.66e-26 | 110 |
| Msa0221260 | MtrunA17_Chr2g0325651 | 34.884 | 215 | 128 | 4 | 307 | 510 | 153 | 366 | 9.57e-14 | 73.2 |
| Msa0221260 | MtrunA17_Chr2g0280141 | 36.547 | 446 | 227 | 6 | 114 | 512 | 66 | 502 | 4.29e-53 | 193 |
| Msa0221260 | MtrunA17_Chr2g0280141 | 34.842 | 221 | 130 | 3 | 193 | 409 | 364 | 574 | 4.45e-18 | 88.2 |
| Msa0221260 | MtrunA17_Chr2g0333341 | 34.940 | 498 | 238 | 15 | 1 | 462 | 1 | 448 | 5.49e-51 | 184 |
| Msa0221260 | MtrunA17_Chr2g0325611 | 58.696 | 184 | 67 | 2 | 336 | 519 | 144 | 318 | 6.30e-43 | 161 |
| Msa0221260 | MtrunA17_Chr2g0325611 | 36.968 | 376 | 156 | 11 | 40 | 411 | 10 | 308 | 6.13e-39 | 150 |
| Msa0221260 | MtrunA17_Chr2g0325261 | 35.955 | 356 | 138 | 12 | 1 | 317 | 2 | 306 | 4.97e-40 | 147 |
| Msa0221260 | MtrunA17_Chr2g0325261 | 34.884 | 215 | 110 | 5 | 241 | 429 | 96 | 306 | 3.13e-17 | 82.8 |
| Msa0221260 | MtrunA17_Chr2g0325261 | 48.235 | 85 | 44 | 0 | 415 | 499 | 222 | 306 | 1.12e-11 | 65.9 |
| Msa0221260 | MtrunA17_Chr2g0325341 | 35.955 | 356 | 138 | 12 | 1 | 317 | 2 | 306 | 4.97e-40 | 147 |
| Msa0221260 | MtrunA17_Chr2g0325341 | 34.884 | 215 | 110 | 5 | 241 | 429 | 96 | 306 | 3.13e-17 | 82.8 |
| Msa0221260 | MtrunA17_Chr2g0325341 | 48.235 | 85 | 44 | 0 | 415 | 499 | 222 | 306 | 1.12e-11 | 65.9 |
| Msa0221260 | MtrunA17_Chr5g0434741 | 35.174 | 344 | 154 | 13 | 1 | 315 | 1 | 304 | 4.73e-35 | 134 |
| Msa0221260 | MtrunA17_Chr5g0434741 | 36.170 | 188 | 101 | 4 | 263 | 440 | 125 | 303 | 5.25e-13 | 70.1 |
| Msa0221260 | MtrunA17_Chr2g0325201 | 42.735 | 234 | 124 | 4 | 169 | 399 | 2 | 228 | 5.72e-33 | 125 |
| Msa0221260 | MtrunA17_Chr2g0325241 | 42.276 | 246 | 106 | 4 | 251 | 496 | 119 | 328 | 8.69e-32 | 127 |
| Msa0221260 | MtrunA17_Chr2g0325241 | 41.079 | 241 | 130 | 5 | 311 | 544 | 121 | 356 | 4.40e-31 | 125 |
| Msa0221260 | MtrunA17_Chr2g0325241 | 45.641 | 195 | 93 | 3 | 233 | 427 | 143 | 324 | 3.48e-29 | 120 |
| Msa0221260 | MtrunA17_Chr2g0325241 | 32.090 | 402 | 179 | 14 | 1 | 396 | 8 | 321 | 2.78e-19 | 90.5 |
| Msa0221260 | MtrunA17_Chr2g0325791 | 48.503 | 167 | 72 | 4 | 294 | 446 | 3 | 169 | 1.85e-28 | 115 |
| Msa0221260 | MtrunA17_Chr2g0325791 | 42.949 | 156 | 59 | 2 | 214 | 355 | 23 | 162 | 5.46e-18 | 85.1 |
| Msa0221260 | MtrunA17_Chr2g0325791 | 50.862 | 116 | 55 | 1 | 278 | 391 | 41 | 156 | 1.56e-16 | 80.9 |
| Msa0221260 | MtrunA17_Chr2g0325211 | 41.791 | 201 | 99 | 2 | 341 | 541 | 3 | 185 | 2.56e-22 | 94.7 |
| Msa0221260 | MtrunA17_Chr2g0325211 | 40.698 | 172 | 76 | 5 | 254 | 415 | 2 | 157 | 1.99e-15 | 74.7 |
| Msa0221260 | MtrunA17_Chr2g0325211 | 36.810 | 163 | 83 | 3 | 296 | 444 | 2 | 158 | 2.15e-11 | 63.2 |
| Msa0221260 | MtrunA17_Chr2g0325211 | 33.766 | 154 | 66 | 3 | 240 | 357 | 2 | 155 | 3.50e-11 | 62.4 |
| Msa0221260 | MtrunA17_Chr2g0332961 | 47.872 | 188 | 63 | 5 | 325 | 510 | 74 | 228 | 3.63e-22 | 98.2 |
| Msa0221260 | MtrunA17_Chr2g0332961 | 33.088 | 272 | 117 | 10 | 80 | 339 | 7 | 225 | 3.01e-11 | 65.1 |
| Msa0221260 | MtrunA17_Chr2g0325801 | 61.842 | 76 | 18 | 1 | 117 | 181 | 50 | 125 | 1.36e-18 | 82.0 |
| Msa0221260 | MtrunA17_Chr2g0325801 | 75.000 | 56 | 13 | 1 | 1 | 56 | 2 | 56 | 8.95e-13 | 65.5 |
| Msa0221260 | MtrunA17_Chr2g0325731 | 66.071 | 56 | 19 | 0 | 245 | 300 | 1 | 56 | 8.07e-15 | 69.3 |
| Msa0221260 | MtrunA17_Chr2g0325731 | 68.627 | 51 | 16 | 0 | 310 | 360 | 8 | 58 | 7.12e-13 | 63.9 |
| Msa0221260 | MtrunA17_Chr2g0325731 | 55.172 | 58 | 26 | 0 | 345 | 402 | 1 | 58 | 1.70e-11 | 60.1 |
| Msa0221260 | MtrunA17_Chr3g0140581 | 45.882 | 85 | 46 | 0 | 143 | 227 | 21 | 105 | 5.00e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 82 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTCAATCTCTCTCTTTA+TGG | 0.138778 | 2_1:+69811685 | None:intergenic |
| TCGTCAAAATAGTTCATTAA+TGG | 0.190625 | 2_1:+69810506 | None:intergenic |
| AGCAATGATTCCTCAGATTA+TGG | 0.195846 | 2_1:-69812032 | Msa0221260:CDS |
| TATTTCGTCAAGAATTAAAA+TGG | 0.260976 | 2_1:-69811822 | Msa0221260:CDS |
| GTAATACACTACCAGTTAAA+AGG | 0.292699 | 2_1:-69811952 | Msa0221260:intron |
| TCAAAGCTTAATAAATTTGA+TGG | 0.323581 | 2_1:-69810569 | Msa0221260:CDS |
| AGATCTTGAAAATAAGAAAA+AGG | 0.341083 | 2_1:-69811654 | Msa0221260:CDS |
| GCAATGATTCCTCAGATTAT+GGG | 0.352268 | 2_1:-69812031 | Msa0221260:CDS |
| TCAAAAGAGGAGGAGTTTAA+AGG | 0.367324 | 2_1:-69810821 | Msa0221260:CDS |
| ACATGTAATAATAACAATAA+TGG | 0.385710 | 2_1:-69812001 | Msa0221260:CDS |
| TATAAAGAGAAGCAACTTGA+TGG | 0.408541 | 2_1:-69811143 | Msa0221260:intron |
| TATTTGATGGAGGACTTGAT+TGG | 0.409942 | 2_1:-69811533 | Msa0221260:CDS |
| TTGACTCAAGCTCCTTCATT+CGG | 0.421444 | 2_1:+69811330 | None:intergenic |
| AATTTATTAAGCTTTGACTC+TGG | 0.434556 | 2_1:+69810575 | None:intergenic |
| TTAAAAGACAAGCAATTTGA+AGG | 0.442022 | 2_1:-69810611 | Msa0221260:CDS |
| GGAAGCACACCTCTATTTGA+TGG | 0.443917 | 2_1:-69811546 | Msa0221260:CDS |
| GAGAATAAGTTCAAAGTACT+AGG | 0.444546 | 2_1:-69810647 | Msa0221260:CDS |
| TTGATTCATGCTCCTTCACC+CGG | 0.446148 | 2_1:+69811288 | None:intergenic |
| TGGAAAGAGAAGCAACTTGA+TGG | 0.447111 | 2_1:-69811115 | Msa0221260:CDS |
| GTTAAGAAGAGGGATACTTC+TGG | 0.448712 | 2_1:-69811974 | Msa0221260:intron |
| CGTTATCATCATACGGTGCT+GGG | 0.451444 | 2_1:+69811873 | None:intergenic |
| CTGATTCCAACTCCTTCACT+CGG | 0.451492 | 2_1:+69810924 | None:intergenic |
| GAAGGAGGAATTCAAAGGTC+AGG | 0.471633 | 2_1:-69810774 | Msa0221260:CDS |
| TCAAAAGAAAAGCAATTTGA+AGG | 0.472186 | 2_1:-69810863 | Msa0221260:CDS |
| TCGTTATCATCATACGGTGC+TGG | 0.482747 | 2_1:+69811872 | None:intergenic |
| TTGATTCAAACTCCTTTGCT+CGG | 0.482976 | 2_1:+69810966 | None:intergenic |
| CGAAGCTCGCAAGAAAATCC+AGG | 0.486257 | 2_1:-69811606 | Msa0221260:CDS |
| AAAGCAGCAATTTGAAAGCC+AGG | 0.488186 | 2_1:-69810732 | Msa0221260:CDS |
| GCAAGCCATTTAAAATTGAA+AGG | 0.489730 | 2_1:+69812133 | None:intergenic |
| GTCCATAAAGAGAGAGATTG+AGG | 0.494859 | 2_1:-69811687 | Msa0221260:CDS |
| GAAGGAGTTTGAATCAAAGA+AGG | 0.501648 | 2_1:-69810792 | Msa0221260:CDS |
| TCAAGTCCTCCATCAAATAG+AGG | 0.517023 | 2_1:+69811537 | None:intergenic |
| TCAAAAGAGGATGAATTTGA+AGG | 0.517933 | 2_1:-69810947 | Msa0221260:CDS |
| AAAAGAAGCATTTCGAGAGC+AGG | 0.517991 | 2_1:-69810901 | Msa0221260:CDS |
| TAGATTCCAGCTCCTTCACA+TGG | 0.519246 | 2_1:+69811050 | None:intergenic |
| TAAATTTGATGGACAAGTGA+AGG | 0.519927 | 2_1:-69810558 | Msa0221260:CDS |
| GTGATTTGAACTCCTCCACT+TGG | 0.520171 | 2_1:+69811204 | None:intergenic |
| TAGAGAAGCAACATGAAGGC+CGG | 0.522149 | 2_1:-69811307 | Msa0221260:CDS |
| AGAACAGCGGAAAGAATTTG+AGG | 0.529889 | 2_1:-69810675 | Msa0221260:CDS |
| TATTGTTTCACTGTCAACTC+AGG | 0.532627 | 2_1:+69810533 | None:intergenic |
| TTTGACGAGGAAACAGAATC+GGG | 0.535253 | 2_1:-69810491 | Msa0221260:CDS |
| CGAAGGCCATGTGAAGGAGC+TGG | 0.538482 | 2_1:-69811056 | Msa0221260:CDS |
| GCATTTCGAAGGCCGAATGA+AGG | 0.542504 | 2_1:-69811342 | Msa0221260:CDS |
| GATAACAACAATGCCTTGCA+CGG | 0.547240 | 2_1:-69811920 | Msa0221260:CDS |
| GCAACATGAAGGCCGGGTGA+AGG | 0.547954 | 2_1:-69811300 | Msa0221260:CDS |
| AGAGAAGCAACATGAAGGCC+GGG | 0.549296 | 2_1:-69811306 | Msa0221260:CDS |
| GGAGTTTGAATCAAAGAAGG+AGG | 0.550239 | 2_1:-69810789 | Msa0221260:CDS |
| TTTCTTAATCGAACCGTGCA+AGG | 0.550857 | 2_1:+69811907 | None:intergenic |
| TGAATTTGAAGGCCGAGTGA+AGG | 0.551409 | 2_1:-69810936 | Msa0221260:CDS |
| AAAGGAGTTTGAATCAAAAG+AGG | 0.554492 | 2_1:-69810960 | Msa0221260:CDS |
| TGAAGAGCAAGTGAAGGAGC+TGG | 0.555980 | 2_1:-69811252 | Msa0221260:CDS |
| GAAAATCGATGGCCGAGCAA+AGG | 0.564000 | 2_1:-69810978 | Msa0221260:CDS |
| GCAATTTGAAGGACAAGTGA+AGG | 0.564315 | 2_1:-69810852 | Msa0221260:CDS |
| TGAGGAATCATTGCTGACAA+AGG | 0.566248 | 2_1:+69812040 | None:intergenic |
| GCAATTTGAAGGACAAGTCA+AGG | 0.571346 | 2_1:-69810600 | Msa0221260:CDS |
| GGAGTTTAAAGGTCAAGTGA+AGG | 0.577732 | 2_1:-69810810 | Msa0221260:CDS |
| GAAGGAGTTCCAGTCAAAAG+AGG | 0.579907 | 2_1:-69810834 | Msa0221260:CDS |
| AGAATAAGTTCAAAGTACTA+GGG | 0.580517 | 2_1:-69810646 | Msa0221260:CDS |
| TCACAACAGAGGCAATTGAA+AGG | 0.580934 | 2_1:-69811185 | Msa0221260:CDS |
| GCATTTCGAGAGCAGGCTGA+AGG | 0.586547 | 2_1:-69810894 | Msa0221260:CDS |
| TAATGGTTCTGTTAAGAAGA+GGG | 0.588477 | 2_1:-69811984 | Msa0221260:CDS |
| TCAATAGAGAAGCAACATGA+AGG | 0.589170 | 2_1:-69811311 | Msa0221260:CDS |
| TGAAGGCCGAGTGAAGGAGT+TGG | 0.591089 | 2_1:-69810930 | Msa0221260:CDS |
| ATAATGGTTCTGTTAAGAAG+AGG | 0.593792 | 2_1:-69811985 | Msa0221260:CDS |
| CAAAATTGAAGAATGTGTCA+AGG | 0.598746 | 2_1:-69811582 | Msa0221260:CDS |
| TGTGAAGTCTTTGAATCTGA+AGG | 0.609221 | 2_1:-69812076 | Msa0221260:CDS |
| TCAAAGAAGGAGGAATTCAA+AGG | 0.609408 | 2_1:-69810779 | Msa0221260:CDS |
| TCATCGTCGTTATCATCATA+CGG | 0.618345 | 2_1:+69811866 | None:intergenic |
| GGAGTTCCAGTCAAAAGAGG+AGG | 0.632267 | 2_1:-69810831 | Msa0221260:CDS |
| TGTAAAGAGAAGAAAATCGA+TGG | 0.632784 | 2_1:-69810989 | Msa0221260:CDS |
| GAAGCTCGCAAGAAAATCCA+GGG | 0.635919 | 2_1:-69811605 | Msa0221260:CDS |
| GCTGAAGAAAGAACTCACAT+TGG | 0.636049 | 2_1:-69811768 | Msa0221260:intron |
| AGAATTCGAAGGCCATGTGA+AGG | 0.636837 | 2_1:-69811062 | Msa0221260:CDS |
| GTTCTCAAACCCATAATCTG+AGG | 0.639071 | 2_1:+69812022 | None:intergenic |
| CGGTTCGATTAAGAAATCAA+AGG | 0.648202 | 2_1:-69811900 | Msa0221260:CDS |
| GAAGCAACTTGATGGACGAG+TGG | 0.648418 | 2_1:-69811135 | Msa0221260:CDS |
| ACAAAACAGAAGCATTTCGA+AGG | 0.648678 | 2_1:-69811353 | Msa0221260:CDS |
| AGAAGCAATTTGAAGAACAG+CGG | 0.652301 | 2_1:-69810688 | Msa0221260:CDS |
| GAAGCAACTTGATGGACGAG+TGG | 0.655238 | 2_1:-69811107 | Msa0221260:CDS |
| GTTATCATCATACGGTGCTG+GGG | 0.667774 | 2_1:+69811874 | None:intergenic |
| AGCACACCTCTATTTGATGG+AGG | 0.669820 | 2_1:-69811543 | Msa0221260:CDS |
| AGGAGTTCAAATCACAACAG+AGG | 0.718141 | 2_1:-69811196 | Msa0221260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATGTAATAATAACAATAA+TGG | - | chr2_1:69810604-69810623 | Msa0221260:CDS | 15.0% |
| !! | AAAAAGGAAATTATTTATGT+TGG | - | chr2_1:69810967-69810986 | Msa0221260:CDS | 15.0% |
| !! | ACATGTAATAATAACAATAA+TGG | - | chr2_1:69810604-69810623 | Msa0221260:CDS | 15.0% |
| !! | AAAAAGGAAATTATTTATGT+TGG | - | chr2_1:69810967-69810986 | Msa0221260:CDS | 15.0% |
| !!! | AAGAACCTTTCAATTTTAAA+TGG | - | chr2_1:69810467-69810486 | Msa0221260:CDS | 20.0% |
| !!! | ATTTTAATTCTTGACGAAAT+AGG | + | chr2_1:69810784-69810803 | None:intergenic | 20.0% |
| !! | TATTTCGTCAAGAATTAAAA+TGG | - | chr2_1:69810783-69810802 | Msa0221260:CDS | 20.0% |
| !! | AGATCTTGAAAATAAGAAAA+AGG | - | chr2_1:69810951-69810970 | Msa0221260:CDS | 20.0% |
| !! | TCAAAGCTTAATAAATTTGA+TGG | - | chr2_1:69812036-69812055 | Msa0221260:CDS | 20.0% |
| !!! | AAGAACCTTTCAATTTTAAA+TGG | - | chr2_1:69810467-69810486 | Msa0221260:CDS | 20.0% |
| !!! | ATTTTAATTCTTGACGAAAT+AGG | + | chr2_1:69810784-69810803 | None:intergenic | 20.0% |
| !! | TATTTCGTCAAGAATTAAAA+TGG | - | chr2_1:69810783-69810802 | Msa0221260:CDS | 20.0% |
| !! | AGATCTTGAAAATAAGAAAA+AGG | - | chr2_1:69810951-69810970 | Msa0221260:CDS | 20.0% |
| !! | TCAAAGCTTAATAAATTTGA+TGG | - | chr2_1:69812036-69812055 | Msa0221260:CDS | 20.0% |
| !!! | GATAAATCAAAGTTTTGTGT+TGG | - | chr2_1:69810433-69810452 | Msa0221260:CDS | 25.0% |
| !! | TCAATTAACATCCTTTTAAC+TGG | + | chr2_1:69810667-69810686 | None:intergenic | 25.0% |
| ! | ATTGGTAGAAAAATCATTTG+TGG | - | chr2_1:69810855-69810874 | Msa0221260:CDS | 25.0% |
| ! | TTGGTAGAAAAATCATTTGT+GGG | - | chr2_1:69810856-69810875 | Msa0221260:CDS | 25.0% |
| ! | TCAAAAAATAGAGAATTCGA+AGG | - | chr2_1:69811532-69811551 | Msa0221260:CDS | 25.0% |
| ! | TCAAAAGAAAAGCAATTTGA+AGG | - | chr2_1:69811742-69811761 | Msa0221260:intron | 25.0% |
| !! | AGAATAAGTTCAAAGTACTA+GGG | - | chr2_1:69811959-69811978 | Msa0221260:intron | 25.0% |
| ! | TTAAAAGACAAGCAATTTGA+AGG | - | chr2_1:69811994-69812013 | Msa0221260:CDS | 25.0% |
| !! | AATTTATTAAGCTTTGACTC+TGG | + | chr2_1:69812033-69812052 | None:intergenic | 25.0% |
| ! | TCGTCAAAATAGTTCATTAA+TGG | + | chr2_1:69812102-69812121 | None:intergenic | 25.0% |
| !!! | ATTAATGAACTATTTTGACG+AGG | - | chr2_1:69812101-69812120 | Msa0221260:CDS | 25.0% |
| !!! | GATAAATCAAAGTTTTGTGT+TGG | - | chr2_1:69810433-69810452 | Msa0221260:CDS | 25.0% |
| !! | TCAATTAACATCCTTTTAAC+TGG | + | chr2_1:69810667-69810686 | None:intergenic | 25.0% |
| ! | ATTGGTAGAAAAATCATTTG+TGG | - | chr2_1:69810855-69810874 | Msa0221260:CDS | 25.0% |
| ! | TTGGTAGAAAAATCATTTGT+GGG | - | chr2_1:69810856-69810875 | Msa0221260:CDS | 25.0% |
| ! | TCAAAAAATAGAGAATTCGA+AGG | - | chr2_1:69811532-69811551 | Msa0221260:CDS | 25.0% |
| ! | TCAAAAGAAAAGCAATTTGA+AGG | - | chr2_1:69811742-69811761 | Msa0221260:intron | 25.0% |
| !! | AGAATAAGTTCAAAGTACTA+GGG | - | chr2_1:69811959-69811978 | Msa0221260:intron | 25.0% |
| ! | TTAAAAGACAAGCAATTTGA+AGG | - | chr2_1:69811994-69812013 | Msa0221260:CDS | 25.0% |
| !! | AATTTATTAAGCTTTGACTC+TGG | + | chr2_1:69812033-69812052 | None:intergenic | 25.0% |
| ! | TCGTCAAAATAGTTCATTAA+TGG | + | chr2_1:69812102-69812121 | None:intergenic | 25.0% |
| !!! | ATTAATGAACTATTTTGACG+AGG | - | chr2_1:69812101-69812120 | Msa0221260:CDS | 25.0% |
| ! | GCAAGCCATTTAAAATTGAA+AGG | + | chr2_1:69810475-69810494 | None:intergenic | 30.0% |
| ! | ATAATGGTTCTGTTAAGAAG+AGG | - | chr2_1:69810620-69810639 | Msa0221260:CDS | 30.0% |
| ! | TAATGGTTCTGTTAAGAAGA+GGG | - | chr2_1:69810621-69810640 | Msa0221260:CDS | 30.0% |
| GTAATACACTACCAGTTAAA+AGG | - | chr2_1:69810653-69810672 | Msa0221260:CDS | 30.0% | |
| CAAAATTGAAGAATGTGTCA+AGG | - | chr2_1:69811023-69811042 | Msa0221260:CDS | 30.0% | |
| GGAATTTGAATCAAAAGAGA+AGG | - | chr2_1:69811188-69811207 | Msa0221260:CDS | 30.0% | |
| TATAAAGAGAAGCAACTTGA+TGG | - | chr2_1:69811462-69811481 | Msa0221260:intron | 30.0% | |
| !!! | GTGTTTTGAAAGTCAAGTTA+AGG | - | chr2_1:69811585-69811604 | Msa0221260:CDS | 30.0% |
| TGTAAAGAGAAGAAAATCGA+TGG | - | chr2_1:69811616-69811635 | Msa0221260:CDS | 30.0% | |
| AAAGGAGTTTGAATCAAAAG+AGG | - | chr2_1:69811645-69811664 | Msa0221260:CDS | 30.0% | |
| TCAAAAGAGGATGAATTTGA+AGG | - | chr2_1:69811658-69811677 | Msa0221260:CDS | 30.0% | |
| !! | TTGATTTTAAGTACTCAACC+TGG | + | chr2_1:69811894-69811913 | None:intergenic | 30.0% |
| ! | GAGAATAAGTTCAAAGTACT+AGG | - | chr2_1:69811958-69811977 | Msa0221260:intron | 30.0% |
| ! | TAAATTTGATGGACAAGTGA+AGG | - | chr2_1:69812047-69812066 | Msa0221260:CDS | 30.0% |
| ! | GCAAGCCATTTAAAATTGAA+AGG | + | chr2_1:69810475-69810494 | None:intergenic | 30.0% |
| ! | ATAATGGTTCTGTTAAGAAG+AGG | - | chr2_1:69810620-69810639 | Msa0221260:CDS | 30.0% |
| ! | TAATGGTTCTGTTAAGAAGA+GGG | - | chr2_1:69810621-69810640 | Msa0221260:CDS | 30.0% |
| GTAATACACTACCAGTTAAA+AGG | - | chr2_1:69810653-69810672 | Msa0221260:CDS | 30.0% | |
| CAAAATTGAAGAATGTGTCA+AGG | - | chr2_1:69811023-69811042 | Msa0221260:CDS | 30.0% | |
| GGAATTTGAATCAAAAGAGA+AGG | - | chr2_1:69811188-69811207 | Msa0221260:CDS | 30.0% | |
| TATAAAGAGAAGCAACTTGA+TGG | - | chr2_1:69811462-69811481 | Msa0221260:intron | 30.0% | |
| !!! | GTGTTTTGAAAGTCAAGTTA+AGG | - | chr2_1:69811585-69811604 | Msa0221260:CDS | 30.0% |
| TGTAAAGAGAAGAAAATCGA+TGG | - | chr2_1:69811616-69811635 | Msa0221260:CDS | 30.0% | |
| AAAGGAGTTTGAATCAAAAG+AGG | - | chr2_1:69811645-69811664 | Msa0221260:CDS | 30.0% | |
| TCAAAAGAGGATGAATTTGA+AGG | - | chr2_1:69811658-69811677 | Msa0221260:CDS | 30.0% | |
| !! | TTGATTTTAAGTACTCAACC+TGG | + | chr2_1:69811894-69811913 | None:intergenic | 30.0% |
| ! | GAGAATAAGTTCAAAGTACT+AGG | - | chr2_1:69811958-69811977 | Msa0221260:intron | 30.0% |
| ! | TAAATTTGATGGACAAGTGA+AGG | - | chr2_1:69812047-69812066 | Msa0221260:CDS | 30.0% |
| TGTGAAGTCTTTGAATCTGA+AGG | - | chr2_1:69810529-69810548 | Msa0221260:CDS | 35.0% | |
| AGCAATGATTCCTCAGATTA+TGG | - | chr2_1:69810573-69810592 | Msa0221260:CDS | 35.0% | |
| GCAATGATTCCTCAGATTAT+GGG | - | chr2_1:69810574-69810593 | Msa0221260:CDS | 35.0% | |
| CGGTTCGATTAAGAAATCAA+AGG | - | chr2_1:69810705-69810724 | Msa0221260:CDS | 35.0% | |
| TCATCGTCGTTATCATCATA+CGG | + | chr2_1:69810742-69810761 | None:intergenic | 35.0% | |
| ! | AATCATTTGTGGGTTGCAAA+AGG | - | chr2_1:69810866-69810885 | Msa0221260:CDS | 35.0% |
| ! | TGTCAAGGATTTTGTAGCAA+AGG | - | chr2_1:69811038-69811057 | Msa0221260:CDS | 35.0% |
| TATTTGATGGAGGACTTGAT+TGG | - | chr2_1:69811072-69811091 | Msa0221260:CDS | 35.0% | |
| GATAGAACTTCATCAAGTCA+AGG | - | chr2_1:69811125-69811144 | Msa0221260:CDS | 35.0% | |
| !! | CAAAACAGAAGCATTTCGAA+AGG | - | chr2_1:69811157-69811176 | Msa0221260:intron | 35.0% |
| ! | AGAGAAGGAATTTGAAATCC+AGG | - | chr2_1:69811203-69811222 | Msa0221260:CDS | 35.0% |
| !! | ACAAAACAGAAGCATTTCGA+AGG | - | chr2_1:69811252-69811271 | Msa0221260:CDS | 35.0% |
| TCAATAGAGAAGCAACATGA+AGG | - | chr2_1:69811294-69811313 | Msa0221260:CDS | 35.0% | |
| !! | AGATTTTGAAGAGCAAGTGA+AGG | - | chr2_1:69811347-69811366 | Msa0221260:CDS | 35.0% |
| GCAATTGAAAGGACAAGTTA+AGG | - | chr2_1:69811431-69811450 | Msa0221260:intron | 35.0% | |
| TTGATTCAAACTCCTTTGCT+CGG | + | chr2_1:69811642-69811661 | None:intergenic | 35.0% | |
| TCAAAAGAGGAGGAGTTTAA+AGG | - | chr2_1:69811784-69811803 | Msa0221260:CDS | 35.0% | |
| GAAGGAGTTTGAATCAAAGA+AGG | - | chr2_1:69811813-69811832 | Msa0221260:CDS | 35.0% | |
| TCAAAGAAGGAGGAATTCAA+AGG | - | chr2_1:69811826-69811845 | Msa0221260:CDS | 35.0% | |
| AGAAGCAATTTGAAGAACAG+CGG | - | chr2_1:69811917-69811936 | Msa0221260:CDS | 35.0% | |
| TATTGTTTCACTGTCAACTC+AGG | + | chr2_1:69812075-69812094 | None:intergenic | 35.0% | |
| ! | TTTTGACGAGGAAACAGAAT+CGG | - | chr2_1:69812113-69812132 | Msa0221260:CDS | 35.0% |
| TGTGAAGTCTTTGAATCTGA+AGG | - | chr2_1:69810529-69810548 | Msa0221260:CDS | 35.0% | |
| AGCAATGATTCCTCAGATTA+TGG | - | chr2_1:69810573-69810592 | Msa0221260:CDS | 35.0% | |
| GCAATGATTCCTCAGATTAT+GGG | - | chr2_1:69810574-69810593 | Msa0221260:CDS | 35.0% | |
| CGGTTCGATTAAGAAATCAA+AGG | - | chr2_1:69810705-69810724 | Msa0221260:CDS | 35.0% | |
| TCATCGTCGTTATCATCATA+CGG | + | chr2_1:69810742-69810761 | None:intergenic | 35.0% | |
| ! | AATCATTTGTGGGTTGCAAA+AGG | - | chr2_1:69810866-69810885 | Msa0221260:CDS | 35.0% |
| ! | TGTCAAGGATTTTGTAGCAA+AGG | - | chr2_1:69811038-69811057 | Msa0221260:CDS | 35.0% |
| TATTTGATGGAGGACTTGAT+TGG | - | chr2_1:69811072-69811091 | Msa0221260:CDS | 35.0% | |
| GATAGAACTTCATCAAGTCA+AGG | - | chr2_1:69811125-69811144 | Msa0221260:CDS | 35.0% | |
| !! | CAAAACAGAAGCATTTCGAA+AGG | - | chr2_1:69811157-69811176 | Msa0221260:intron | 35.0% |
| ! | AGAGAAGGAATTTGAAATCC+AGG | - | chr2_1:69811203-69811222 | Msa0221260:CDS | 35.0% |
| !! | ACAAAACAGAAGCATTTCGA+AGG | - | chr2_1:69811252-69811271 | Msa0221260:CDS | 35.0% |
| TCAATAGAGAAGCAACATGA+AGG | - | chr2_1:69811294-69811313 | Msa0221260:CDS | 35.0% | |
| !! | AGATTTTGAAGAGCAAGTGA+AGG | - | chr2_1:69811347-69811366 | Msa0221260:CDS | 35.0% |
| GCAATTGAAAGGACAAGTTA+AGG | - | chr2_1:69811431-69811450 | Msa0221260:intron | 35.0% | |
| TTGATTCAAACTCCTTTGCT+CGG | + | chr2_1:69811642-69811661 | None:intergenic | 35.0% | |
| TCAAAAGAGGAGGAGTTTAA+AGG | - | chr2_1:69811784-69811803 | Msa0221260:CDS | 35.0% | |
| GAAGGAGTTTGAATCAAAGA+AGG | - | chr2_1:69811813-69811832 | Msa0221260:CDS | 35.0% | |
| TCAAAGAAGGAGGAATTCAA+AGG | - | chr2_1:69811826-69811845 | Msa0221260:CDS | 35.0% | |
| AGAAGCAATTTGAAGAACAG+CGG | - | chr2_1:69811917-69811936 | Msa0221260:CDS | 35.0% | |
| TATTGTTTCACTGTCAACTC+AGG | + | chr2_1:69812075-69812094 | None:intergenic | 35.0% | |
| ! | TTTTGACGAGGAAACAGAAT+CGG | - | chr2_1:69812113-69812132 | Msa0221260:CDS | 35.0% |
| TGAGGAATCATTGCTGACAA+AGG | + | chr2_1:69810568-69810587 | None:intergenic | 40.0% | |
| GTTCTCAAACCCATAATCTG+AGG | + | chr2_1:69810586-69810605 | None:intergenic | 40.0% | |
| GTTAAGAAGAGGGATACTTC+TGG | - | chr2_1:69810631-69810650 | Msa0221260:CDS | 40.0% | |
| GATAACAACAATGCCTTGCA+CGG | - | chr2_1:69810685-69810704 | Msa0221260:CDS | 40.0% | |
| TTTCTTAATCGAACCGTGCA+AGG | + | chr2_1:69810701-69810720 | None:intergenic | 40.0% | |
| GCTGAAGAAAGAACTCACAT+TGG | - | chr2_1:69810837-69810856 | Msa0221260:CDS | 40.0% | |
| GTCCATAAAGAGAGAGATTG+AGG | - | chr2_1:69810918-69810937 | Msa0221260:CDS | 40.0% | |
| CTCCTCAATCTCTCTCTTTA+TGG | + | chr2_1:69810923-69810942 | None:intergenic | 40.0% | |
| ! | CACATTCTTCAATTTTGCCC+TGG | + | chr2_1:69811020-69811039 | None:intergenic | 40.0% |
| TCAAGTCCTCCATCAAATAG+AGG | + | chr2_1:69811071-69811090 | None:intergenic | 40.0% | |
| ! | GGAATTTGAAATCCAGGTGA+AGG | - | chr2_1:69811209-69811228 | Msa0221260:CDS | 40.0% |
| TTGACTCAAGCTCCTTCATT+CGG | + | chr2_1:69811278-69811297 | None:intergenic | 40.0% | |
| !! | GAAGAGTTTTGATAGCCAAG+TGG | - | chr2_1:69811386-69811405 | Msa0221260:intron | 40.0% |
| AGGAGTTCAAATCACAACAG+AGG | - | chr2_1:69811409-69811428 | Msa0221260:intron | 40.0% | |
| TCACAACAGAGGCAATTGAA+AGG | - | chr2_1:69811420-69811439 | Msa0221260:intron | 40.0% | |
| TGGAAAGAGAAGCAACTTGA+TGG | - | chr2_1:69811490-69811509 | Msa0221260:CDS | 40.0% | |
| !! | AAAAGAAGCATTTCGAGAGC+AGG | - | chr2_1:69811704-69811723 | Msa0221260:CDS | 40.0% |
| GCAATTTGAAGGACAAGTGA+AGG | - | chr2_1:69811753-69811772 | Msa0221260:intron | 40.0% | |
| ! | TAAACTCCTCCTCTTTTGAC+TGG | + | chr2_1:69811783-69811802 | None:intergenic | 40.0% |
| GGAGTTTAAAGGTCAAGTGA+AGG | - | chr2_1:69811795-69811814 | Msa0221260:CDS | 40.0% | |
| GGAGTTTGAATCAAAGAAGG+AGG | - | chr2_1:69811816-69811835 | Msa0221260:CDS | 40.0% | |
| AAAGCAGCAATTTGAAAGCC+AGG | - | chr2_1:69811873-69811892 | Msa0221260:CDS | 40.0% | |
| AGAACAGCGGAAAGAATTTG+AGG | - | chr2_1:69811930-69811949 | Msa0221260:CDS | 40.0% | |
| GCAATTTGAAGGACAAGTCA+AGG | - | chr2_1:69812005-69812024 | Msa0221260:CDS | 40.0% | |
| TTTGACGAGGAAACAGAATC+GGG | - | chr2_1:69812114-69812133 | Msa0221260:CDS | 40.0% | |
| TGAGGAATCATTGCTGACAA+AGG | + | chr2_1:69810568-69810587 | None:intergenic | 40.0% | |
| GTTCTCAAACCCATAATCTG+AGG | + | chr2_1:69810586-69810605 | None:intergenic | 40.0% | |
| GTTAAGAAGAGGGATACTTC+TGG | - | chr2_1:69810631-69810650 | Msa0221260:CDS | 40.0% | |
| GATAACAACAATGCCTTGCA+CGG | - | chr2_1:69810685-69810704 | Msa0221260:CDS | 40.0% | |
| TTTCTTAATCGAACCGTGCA+AGG | + | chr2_1:69810701-69810720 | None:intergenic | 40.0% | |
| GCTGAAGAAAGAACTCACAT+TGG | - | chr2_1:69810837-69810856 | Msa0221260:CDS | 40.0% | |
| GTCCATAAAGAGAGAGATTG+AGG | - | chr2_1:69810918-69810937 | Msa0221260:CDS | 40.0% | |
| CTCCTCAATCTCTCTCTTTA+TGG | + | chr2_1:69810923-69810942 | None:intergenic | 40.0% | |
| ! | CACATTCTTCAATTTTGCCC+TGG | + | chr2_1:69811020-69811039 | None:intergenic | 40.0% |
| TCAAGTCCTCCATCAAATAG+AGG | + | chr2_1:69811071-69811090 | None:intergenic | 40.0% | |
| ! | GGAATTTGAAATCCAGGTGA+AGG | - | chr2_1:69811209-69811228 | Msa0221260:CDS | 40.0% |
| TTGACTCAAGCTCCTTCATT+CGG | + | chr2_1:69811278-69811297 | None:intergenic | 40.0% | |
| !! | GAAGAGTTTTGATAGCCAAG+TGG | - | chr2_1:69811386-69811405 | Msa0221260:intron | 40.0% |
| AGGAGTTCAAATCACAACAG+AGG | - | chr2_1:69811409-69811428 | Msa0221260:intron | 40.0% | |
| TCACAACAGAGGCAATTGAA+AGG | - | chr2_1:69811420-69811439 | Msa0221260:intron | 40.0% | |
| TGGAAAGAGAAGCAACTTGA+TGG | - | chr2_1:69811490-69811509 | Msa0221260:CDS | 40.0% | |
| !! | AAAAGAAGCATTTCGAGAGC+AGG | - | chr2_1:69811704-69811723 | Msa0221260:CDS | 40.0% |
| GCAATTTGAAGGACAAGTGA+AGG | - | chr2_1:69811753-69811772 | Msa0221260:intron | 40.0% | |
| ! | TAAACTCCTCCTCTTTTGAC+TGG | + | chr2_1:69811783-69811802 | None:intergenic | 40.0% |
| GGAGTTTAAAGGTCAAGTGA+AGG | - | chr2_1:69811795-69811814 | Msa0221260:CDS | 40.0% | |
| GGAGTTTGAATCAAAGAAGG+AGG | - | chr2_1:69811816-69811835 | Msa0221260:CDS | 40.0% | |
| AAAGCAGCAATTTGAAAGCC+AGG | - | chr2_1:69811873-69811892 | Msa0221260:CDS | 40.0% | |
| AGAACAGCGGAAAGAATTTG+AGG | - | chr2_1:69811930-69811949 | Msa0221260:CDS | 40.0% | |
| GCAATTTGAAGGACAAGTCA+AGG | - | chr2_1:69812005-69812024 | Msa0221260:CDS | 40.0% | |
| TTTGACGAGGAAACAGAATC+GGG | - | chr2_1:69812114-69812133 | Msa0221260:CDS | 40.0% | |
| ! | GTTATCATCATACGGTGCTG+GGG | + | chr2_1:69810734-69810753 | None:intergenic | 45.0% |
| CGTTATCATCATACGGTGCT+GGG | + | chr2_1:69810735-69810754 | None:intergenic | 45.0% | |
| TCGTTATCATCATACGGTGC+TGG | + | chr2_1:69810736-69810755 | None:intergenic | 45.0% | |
| GAAGCTCGCAAGAAAATCCA+GGG | - | chr2_1:69811000-69811019 | Msa0221260:CDS | 45.0% | |
| ! | GGAAGCACACCTCTATTTGA+TGG | - | chr2_1:69811059-69811078 | Msa0221260:CDS | 45.0% |
| AGCACACCTCTATTTGATGG+AGG | - | chr2_1:69811062-69811081 | Msa0221260:CDS | 45.0% | |
| GCATTTCGAAAGGCAAGTGA+AGG | - | chr2_1:69811167-69811186 | Msa0221260:intron | 45.0% | |
| TAGAGAAGCAACATGAAGGC+CGG | - | chr2_1:69811298-69811317 | Msa0221260:CDS | 45.0% | |
| TTGATTCATGCTCCTTCACC+CGG | + | chr2_1:69811320-69811339 | None:intergenic | 45.0% | |
| !! | GAGTTTTGATAGCCAAGTGG+AGG | - | chr2_1:69811389-69811408 | Msa0221260:intron | 45.0% |
| GTGATTTGAACTCCTCCACT+TGG | + | chr2_1:69811404-69811423 | None:intergenic | 45.0% | |
| AGAATTCGAAGGCCATGTGA+AGG | - | chr2_1:69811543-69811562 | Msa0221260:CDS | 45.0% | |
| TAGATTCCAGCTCCTTCACA+TGG | + | chr2_1:69811558-69811577 | None:intergenic | 45.0% | |
| TGAATTTGAAGGCCGAGTGA+AGG | - | chr2_1:69811669-69811688 | Msa0221260:CDS | 45.0% | |
| CTGATTCCAACTCCTTCACT+CGG | + | chr2_1:69811684-69811703 | None:intergenic | 45.0% | |
| GAAGGAGTTCCAGTCAAAAG+AGG | - | chr2_1:69811771-69811790 | Msa0221260:CDS | 45.0% | |
| GAAGGAGGAATTCAAAGGTC+AGG | - | chr2_1:69811831-69811850 | Msa0221260:CDS | 45.0% | |
| ! | GTTATCATCATACGGTGCTG+GGG | + | chr2_1:69810734-69810753 | None:intergenic | 45.0% |
| CGTTATCATCATACGGTGCT+GGG | + | chr2_1:69810735-69810754 | None:intergenic | 45.0% | |
| TCGTTATCATCATACGGTGC+TGG | + | chr2_1:69810736-69810755 | None:intergenic | 45.0% | |
| GAAGCTCGCAAGAAAATCCA+GGG | - | chr2_1:69811000-69811019 | Msa0221260:CDS | 45.0% | |
| ! | GGAAGCACACCTCTATTTGA+TGG | - | chr2_1:69811059-69811078 | Msa0221260:CDS | 45.0% |
| AGCACACCTCTATTTGATGG+AGG | - | chr2_1:69811062-69811081 | Msa0221260:CDS | 45.0% | |
| GCATTTCGAAAGGCAAGTGA+AGG | - | chr2_1:69811167-69811186 | Msa0221260:intron | 45.0% | |
| TAGAGAAGCAACATGAAGGC+CGG | - | chr2_1:69811298-69811317 | Msa0221260:CDS | 45.0% | |
| TTGATTCATGCTCCTTCACC+CGG | + | chr2_1:69811320-69811339 | None:intergenic | 45.0% | |
| !! | GAGTTTTGATAGCCAAGTGG+AGG | - | chr2_1:69811389-69811408 | Msa0221260:intron | 45.0% |
| GTGATTTGAACTCCTCCACT+TGG | + | chr2_1:69811404-69811423 | None:intergenic | 45.0% | |
| AGAATTCGAAGGCCATGTGA+AGG | - | chr2_1:69811543-69811562 | Msa0221260:CDS | 45.0% | |
| TAGATTCCAGCTCCTTCACA+TGG | + | chr2_1:69811558-69811577 | None:intergenic | 45.0% | |
| TGAATTTGAAGGCCGAGTGA+AGG | - | chr2_1:69811669-69811688 | Msa0221260:CDS | 45.0% | |
| CTGATTCCAACTCCTTCACT+CGG | + | chr2_1:69811684-69811703 | None:intergenic | 45.0% | |
| GAAGGAGTTCCAGTCAAAAG+AGG | - | chr2_1:69811771-69811790 | Msa0221260:CDS | 45.0% | |
| GAAGGAGGAATTCAAAGGTC+AGG | - | chr2_1:69811831-69811850 | Msa0221260:CDS | 45.0% | |
| CGAAGCTCGCAAGAAAATCC+AGG | - | chr2_1:69810999-69811018 | Msa0221260:CDS | 50.0% | |
| CATTCACTAGCTCCTTCACC+TGG | + | chr2_1:69811224-69811243 | None:intergenic | 50.0% | |
| GCATTTCGAAGGCCGAATGA+AGG | - | chr2_1:69811263-69811282 | Msa0221260:CDS | 50.0% | |
| AGAGAAGCAACATGAAGGCC+GGG | - | chr2_1:69811299-69811318 | Msa0221260:CDS | 50.0% | |
| TGAAGAGCAAGTGAAGGAGC+TGG | - | chr2_1:69811353-69811372 | Msa0221260:CDS | 50.0% | |
| ! | GAAGCAACTTGATGGACGAG+TGG | - | chr2_1:69811470-69811489 | Msa0221260:intron | 50.0% |
| ! | GAAGCAACTTGATGGACGAG+TGG | - | chr2_1:69811470-69811489 | Msa0221260:intron | 50.0% |
| GAAAATCGATGGCCGAGCAA+AGG | - | chr2_1:69811627-69811646 | Msa0221260:CDS | 50.0% | |
| GGAGTTCCAGTCAAAAGAGG+AGG | - | chr2_1:69811774-69811793 | Msa0221260:CDS | 50.0% | |
| CGAAGCTCGCAAGAAAATCC+AGG | - | chr2_1:69810999-69811018 | Msa0221260:CDS | 50.0% | |
| CATTCACTAGCTCCTTCACC+TGG | + | chr2_1:69811224-69811243 | None:intergenic | 50.0% | |
| GCATTTCGAAGGCCGAATGA+AGG | - | chr2_1:69811263-69811282 | Msa0221260:CDS | 50.0% | |
| AGAGAAGCAACATGAAGGCC+GGG | - | chr2_1:69811299-69811318 | Msa0221260:CDS | 50.0% | |
| TGAAGAGCAAGTGAAGGAGC+TGG | - | chr2_1:69811353-69811372 | Msa0221260:CDS | 50.0% | |
| ! | GAAGCAACTTGATGGACGAG+TGG | - | chr2_1:69811470-69811489 | Msa0221260:intron | 50.0% |
| ! | GAAGCAACTTGATGGACGAG+TGG | - | chr2_1:69811470-69811489 | Msa0221260:intron | 50.0% |
| GAAAATCGATGGCCGAGCAA+AGG | - | chr2_1:69811627-69811646 | Msa0221260:CDS | 50.0% | |
| GGAGTTCCAGTCAAAAGAGG+AGG | - | chr2_1:69811774-69811793 | Msa0221260:CDS | 50.0% | |
| TGAAGGCCGAGTGAAGGAGT+TGG | - | chr2_1:69811675-69811694 | Msa0221260:CDS | 55.0% | |
| GCATTTCGAGAGCAGGCTGA+AGG | - | chr2_1:69811711-69811730 | Msa0221260:CDS | 55.0% | |
| TGAAGGCCGAGTGAAGGAGT+TGG | - | chr2_1:69811675-69811694 | Msa0221260:CDS | 55.0% | |
| GCATTTCGAGAGCAGGCTGA+AGG | - | chr2_1:69811711-69811730 | Msa0221260:CDS | 55.0% | |
| GCAACATGAAGGCCGGGTGA+AGG | - | chr2_1:69811305-69811324 | Msa0221260:CDS | 60.0% | |
| CGAAGGCCATGTGAAGGAGC+TGG | - | chr2_1:69811549-69811568 | Msa0221260:CDS | 60.0% | |
| GCAACATGAAGGCCGGGTGA+AGG | - | chr2_1:69811305-69811324 | Msa0221260:CDS | 60.0% | |
| CGAAGGCCATGTGAAGGAGC+TGG | - | chr2_1:69811549-69811568 | Msa0221260:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 69810415 | 69812212 | 69810415 | ID=Msa0221260;Name=Msa0221260 |
| chr2_1 | mRNA | 69810415 | 69812212 | 69810415 | ID=Msa0221260-mRNA-1;Parent=Msa0221260;Name=Msa0221260-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|0|0|5|0|547 |
| chr2_1 | exon | 69811975 | 69812212 | 69811975 | ID=Msa0221260-mRNA-1:exon:19851;Parent=Msa0221260-mRNA-1 |
| chr2_1 | exon | 69811769 | 69811959 | 69811769 | ID=Msa0221260-mRNA-1:exon:19850;Parent=Msa0221260-mRNA-1 |
| chr2_1 | exon | 69811487 | 69811735 | 69811487 | ID=Msa0221260-mRNA-1:exon:19849;Parent=Msa0221260-mRNA-1 |
| chr2_1 | exon | 69811181 | 69811402 | 69811181 | ID=Msa0221260-mRNA-1:exon:19848;Parent=Msa0221260-mRNA-1 |
| chr2_1 | exon | 69810415 | 69811158 | 69810415 | ID=Msa0221260-mRNA-1:exon:19847;Parent=Msa0221260-mRNA-1 |
| chr2_1 | CDS | 69811975 | 69812212 | 69811975 | ID=Msa0221260-mRNA-1:cds;Parent=Msa0221260-mRNA-1 |
| chr2_1 | CDS | 69811769 | 69811959 | 69811769 | ID=Msa0221260-mRNA-1:cds;Parent=Msa0221260-mRNA-1 |
| chr2_1 | CDS | 69811487 | 69811735 | 69811487 | ID=Msa0221260-mRNA-1:cds;Parent=Msa0221260-mRNA-1 |
| chr2_1 | CDS | 69811181 | 69811402 | 69811181 | ID=Msa0221260-mRNA-1:cds;Parent=Msa0221260-mRNA-1 |
| chr2_1 | CDS | 69810415 | 69811158 | 69810415 | ID=Msa0221260-mRNA-1:cds;Parent=Msa0221260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
