AlfalfaGEDB | Msa0221510

M. sativa cultivar zhongmu-4 / Msa0221510

KEGG: K04427
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF14381.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0221510	XP_003597130.2	97.017	704	4	1	1	704	127	813	0.0	1399

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0221510	sp\|Q9C9U5\|SIS8_ARATH	48.571	280	113	5	426	696	743	1000	1.09e-77	272

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0221510	G7IU31	97.017	704	4	1	1	704	127	813	0.0	1399

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0221510	Msa0263070	0.871013	9.443246e-67	-8.615850e-47
Msa0221510	Msa0284360	0.859107	5.198408e-63	-8.615850e-47
Msa0221510	Msa0650830	0.803745	3.010377e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0221510	MtrunA17_Chr2g0325851	97.017	704	4	1	1	704	127	813	0.0	1399
Msa0221510	MtrunA17_Chr4g0041201	80.198	707	118	3	1	703	114	802	0.0	1146
Msa0221510	MtrunA17_Chr6g0482711	47.163	282	118	5	424	696	653	912	9.09e-79	270
Msa0221510	MtrunA17_Chr8g0392871	52.814	231	105	2	424	652	732	960	1.16e-77	268
Msa0221510	MtrunA17_Chr1g0151541	45.423	284	135	6	417	696	648	915	2.65e-76	263
Msa0221510	MtrunA17_Chr1g0191171	49.782	229	111	2	426	652	684	910	5.39e-75	260
Msa0221510	MtrunA17_Chr1g0179331	49.597	248	119	3	410	651	530	777	1.61e-74	257
Msa0221510	MtrunA17_Chr1g0171451	48.511	235	119	1	419	651	402	636	2.17e-71	245
Msa0221510	MtrunA17_Chr3g0132791	45.105	286	140	4	414	696	636	907	2.25e-71	249
Msa0221510	MtrunA17_Chr5g0427651	41.801	311	158	5	395	696	604	900	7.32e-70	245

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0221510	AT3G58640.1	70.350	715	167	8	3	704	127	809	0.0	1008
Msa0221510	AT3G58640.2	70.350	715	167	8	3	704	127	809	0.0	1008
Msa0221510	AT2G31010.1	66.948	711	176	8	1	704	117	775	0.0	947
Msa0221510	AT2G31010.2	66.948	711	176	8	1	704	117	775	0.0	947
Msa0221510	AT2G42640.1	49.787	705	237	16	1	704	193	781	0.0	622
Msa0221510	AT2G42640.4	49.787	705	237	16	1	704	155	743	0.0	622
Msa0221510	AT2G42640.3	46.875	544	190	14	1	543	193	638	7.03e-140	425
Msa0221510	AT2G42640.2	44.491	481	170	13	1	480	193	577	3.32e-107	340
Msa0221510	AT1G73660.1	48.571	280	113	5	426	696	743	1000	1.11e-78	272
Msa0221510	AT5G11850.1	44.483	290	129	6	417	696	594	861	6.14e-77	265

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Find 184 sgRNAs with CRISPR-Local

Find 1056 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCCTTGGTTGATTT+TGG	0.153791	2_1:+70112833	None:intergenic
AAAGCCTCCACGTTTATCTA+TGG	0.448888	2_1:-70103012	Msa0221510:CDS
AAAGTATTAGCTGATACTGT+GGG	0.566717	2_1:-70113287	Msa0221510:CDS
AAATGTGATATCTTTAGCCT+TGG	0.428506	2_1:-70100178	Msa0221510:CDS
AACAGAGGACTGCTAGTTCA+AGG	0.488821	2_1:-70110885	Msa0221510:intron
AACAGGGCTTGCCCAATGAC+GGG	0.433703	2_1:-70112958	Msa0221510:intron
AATCGTCTTATGAGAGAACG+AGG	0.657178	2_1:-70107416	Msa0221510:CDS
AATCGTGGTGTTCAGATGCT+GGG	0.556990	2_1:-70113353	Msa0221510:CDS
AATGTGATATCTTTAGCCTT+GGG	0.430539	2_1:-70100177	Msa0221510:CDS
AATTAAGAAGATAGCTGGAT+TGG	0.482652	2_1:-70113836	Msa0221510:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTTCTTAATTATTGCAGC+TGG	+	chr2_1:70099748-70099767	None:intergenic	30.0%
GCAATAATTAAGAAGATAGC+TGG	-	chr2_1:70099751-70099770	Msa0221510:three_prime_UTR	30.0%
AATTAAGAAGATAGCTGGAT+TGG	-	chr2_1:70099756-70099775	Msa0221510:three_prime_UTR	30.0%
CAACATTAACAACAATCAGT+GGG	+	chr2_1:70099833-70099852	None:intergenic	30.0%
TTCTATGGCAATGACTATTT+GGG	+	chr2_1:70099886-70099905	None:intergenic	30.0%
ATTCTATGGCAATGACTATT+TGG	+	chr2_1:70099887-70099906	None:intergenic	30.0%
AATAGATGGAGGCAATTAAA+AGG	+	chr2_1:70100074-70100093	None:intergenic	30.0%
ACTTTAAATAAGATAGCTCG+AGG	+	chr2_1:70100290-70100309	None:intergenic	30.0%
TACTGTGATTCTCTTTAACA+GGG	-	chr2_1:70100618-70100637	Msa0221510:intron	30.0%
ATTAAATTCAGTGGAAATGC+TGG	-	chr2_1:70100704-70100723	Msa0221510:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	70099573	70114041	70099573	ID=Msa0221510;Name=Msa0221510
chr2_1	mRNA	70099573	70114041	70099573	ID=Msa0221510-mRNA-1;Parent=Msa0221510;Name=Msa0221510-mRNA-1;_AED=0.10;_eAED=0.10;_QI=124\|0.92\|0.93\|1\|1\|1\|15\|208\|704
chr2_1	exon	70099573	70099863	70099573	ID=Msa0221510-mRNA-1:exon:20042;Parent=Msa0221510-mRNA-1
chr2_1	exon	70099903	70100026	70099903	ID=Msa0221510-mRNA-1:exon:20041;Parent=Msa0221510-mRNA-1
chr2_1	exon	70100117	70100405	70100117	ID=Msa0221510-mRNA-1:exon:20040;Parent=Msa0221510-mRNA-1
chr2_1	exon	70102903	70103059	70102903	ID=Msa0221510-mRNA-1:exon:20039;Parent=Msa0221510-mRNA-1
chr2_1	exon	70103489	70103508	70103489	ID=Msa0221510-mRNA-1:exon:20038;Parent=Msa0221510-mRNA-1
chr2_1	exon	70103610	70103733	70103610	ID=Msa0221510-mRNA-1:exon:20037;Parent=Msa0221510-mRNA-1
chr2_1	exon	70104610	70104898	70104610	ID=Msa0221510-mRNA-1:exon:20036;Parent=Msa0221510-mRNA-1
chr2_1	exon	70107352	70107472	70107352	ID=Msa0221510-mRNA-1:exon:20035;Parent=Msa0221510-mRNA-1
chr2_1	exon	70109208	70109306	70109208	ID=Msa0221510-mRNA-1:exon:20034;Parent=Msa0221510-mRNA-1
chr2_1	exon	70109845	70109940	70109845	ID=Msa0221510-mRNA-1:exon:20033;Parent=Msa0221510-mRNA-1
chr2_1	exon	70110886	70110975	70110886	ID=Msa0221510-mRNA-1:exon:20032;Parent=Msa0221510-mRNA-1
chr2_1	exon	70111180	70111287	70111180	ID=Msa0221510-mRNA-1:exon:20031;Parent=Msa0221510-mRNA-1
chr2_1	exon	70112731	70112975	70112731	ID=Msa0221510-mRNA-1:exon:20030;Parent=Msa0221510-mRNA-1
chr2_1	exon	70113265	70113453	70113265	ID=Msa0221510-mRNA-1:exon:20029;Parent=Msa0221510-mRNA-1
chr2_1	exon	70113837	70114041	70113837	ID=Msa0221510-mRNA-1:exon:20028;Parent=Msa0221510-mRNA-1
chr2_1	five_prime_UTR	70113918	70114041	70113918	ID=Msa0221510-mRNA-1:five_prime_utr;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70113837	70113917	70113837	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70113265	70113453	70113265	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70112731	70112975	70112731	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70111180	70111287	70111180	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70110886	70110975	70110886	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70109845	70109940	70109845	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70109208	70109306	70109208	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70107352	70107472	70107352	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70104610	70104898	70104610	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70103610	70103733	70103610	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70103489	70103508	70103489	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70102903	70103059	70102903	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70100117	70100405	70100117	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70099903	70100026	70099903	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	CDS	70099781	70099863	70099781	ID=Msa0221510-mRNA-1:cds;Parent=Msa0221510-mRNA-1
chr2_1	three_prime_UTR	70099573	70099780	70099573	ID=Msa0221510-mRNA-1:three_prime_utr;Parent=Msa0221510-mRNA-1

Gene Sequence

>Msa0221510

ATGTTGAAGCAACTGATTGTGGCATTAGTTAAAGGATTAAACTCAAATCCAGCTGCAATAATTAAGAAGATAGCTGGATTGGTTTCTGATTTTTATAAGCGACCCAGTGTGGAAAGTCCAGCAAAAGCCGCGTTTGATGAAACCTCTCACATTCTTGAGAATCGTGGTGTTCAGATGCTGGGGCAAATAAAGCACGGTTCATGTCGTCCTCGAGCTATCTTATTTAAAGTATTAGCTGATACTGTGGGTCTTGAAAGCAGGCTCATGGTGGGCTTGCCCAATGACGGGGCTGTCGAATGTGTAGATTCATACAAGCATATGTCTGTGATAGTTGAATTAAATTCAGTGGAAATGCTGGTTGACCTTATGAGATTTCCGGGTCAATTGTTACCAAAATCAACCAAGGCAGTTTTTATGAGTCATATATCCGCAGCAGGAGAAAGTGATTCAGCAGAAAATGATTCTTGTGATTCGCCATTAGAACCAAACAGTCCTCTATTTGGAGTTTCAGAGAGTGCTGAGAAGGAGGAAAACCTTCAGTTCAATAGAAGATCTGAAGTGTCTTCAAATGTAACAGGCCTTTCCCTGAGAAATATGATGTTAAGATCAAATAGCAGTTTGAGTTTGTCTCATAGTGAACCCAATATTGCAACTGCATTTGGTCGCCGTAGTCGGAGAAAGGCCATTGCCGAACAGAGGACTGCTAGTTCAAGTCCAGAGCACCCATCATTTCGAGCACGTGCGCGGTCCATGCTTAGTGGTGATAGGACAGAATTTAGAGATTTTGCTGATGACCAGTCTACATCAAGATCCAGCTATAGATCAGATGGTGCATCCTCATCAGAAGCTCGTAGGATACGAAGAAGAAGCATCAGCATTACGCCAGAGATTGGGGATGATATCGTAAGGGCTGTACGTGCAATGAATGAAACACTAAAGCAAAATCGTCTTATGAGAGAACGAGGGGATGATAACTCATTCTCCCATTATCCGAGCAATAGAAGTAGTGATGCAGATCTTCATAAAAATGCGTCAAATTTCCATCTTGATGGTCATGATGAAAGGTCCACCTTATATTCTTTTCAGCGTGACCAAGTAACATCACAAAAGGCAATGTCATTACCATCTTCACCACATGACTATAGAAGTCAAGCTTCTGAGAGAAGCGAGCTATCAAGATACGGAGTTAATGATGAAATGGAGTCGACCTGGAATAAAGTACTTGAATCTCAAATGTTCAATGGCAAACCTTTATTGGCATATGAAGCATGGAATATTGACTTCTCAGAATTAACTGTTGGAACTCGTGTCGGGATCGGCTTCTTTGGAGAAGTCTTCCGTGGCATATGGAATGGCACAGATGTTGCAATCAAGGTTTTTCTAGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAAATATCTATTCTGAGCCGACTCCGACATCCTAATGTCATCTTATTTCTTGGTGCATGCACAAAGCCTCCACGTTTATCTATGGTCACAGAATATATGGAGATGGGATCATTGTATTACCTGATACATTTGAGCGGTCAGAAGAAAAGGCTCAGTTGGCGGAGACGACTAAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGTATGAAGATTGTTCACCGTGATTTGAAAAGTGCAAATTGTCTAGTGAACAAGCATTGGACTGTGAAAATCTGTGATTTTGGGCTTTCAAGAATAATGTTAGATCCTCCAATCAGAGATTCTTCGTCGGCTGGAACTCCCGAATGGATGGCTCCTGAACTCATCCGAAATGAACCATTCGATGAAAAATGTGATATCTTTAGCCTTGGGGTGATAATGTGGGAGCTGTGCACCTTGAACAGACCATGGGAAGGCGTACCACCTGAGAGGGTGGTTTATTCTGTTGCTCATGAGGGTTCCAGAATGGAGATTCCTGAAGGCCCACTAGGCAGGCTGATTTCAGGTCCACACTACATTCTGTTATCACATTTTGATGACAACTTAGACCCATCCGATTGTTGGGCAGATGCACATGAACGGCCAAGTTGTGATGAGATTCTCTCTCGTTTGGTGGACATGGAGTATTCATTGTGTTGA

Protein sequence

>Msa0221510

MLKQLIVALVKGLNSNPAAIIKKIAGLVSDFYKRPSVESPAKAAFDETSHILENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESRLMVGLPNDGAVECVDSYKHMSVIVELNSVEMLVDLMRFPGQLLPKSTKAVFMSHISAAGESDSAENDSCDSPLEPNSPLFGVSESAEKEENLQFNRRSEVSSNVTGLSLRNMMLRSNSSLSLSHSEPNIATAFGRRSRRKAIAEQRTASSSPEHPSFRARARSMLSGDRTEFRDFADDQSTSRSSYRSDGASSSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLMRERGDDNSFSHYPSNRSSDADLHKNASNFHLDGHDERSTLYSFQRDQVTSQKAMSLPSSPHDYRSQASERSELSRYGVNDEMESTWNKVLESQMFNGKPLLAYEAWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLYYLIHLSGQKKRLSWRRRLKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIMLDPPIRDSSSAGTPEWMAPELIRNEPFDEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYSVAHEGSRMEIPEGPLGRLISGPHYILLSHFDDNLDPSDCWADAHERPSCDEILSRLVDMEYSLC*