AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650830 MtrunA17_Chr4g0043121 98.737 396 5 0 1 396 1 396 0.0 811
Msa0650830 MtrunA17_Chr3g0115931 52.824 602 238 9 26 591 99 690 0.0 647
Msa0650830 MtrunA17_Chr5g0426281 50.889 619 248 9 12 591 71 672 0.0 640
Msa0650830 MtrunA17_Chr4g0043131 98.378 185 3 0 407 591 1 185 2.38e-132 384
Msa0650830 MtrunA17_Chr1g0183721 31.959 582 325 10 52 586 25 582 2.58e-101 319
Msa0650830 MtrunA17_Chr1g0187601 34.522 533 287 10 84 578 89 597 2.60e-101 320
Msa0650830 MtrunA17_Chr1g0167381 33.333 522 287 7 84 567 90 588 1.88e-100 318
Msa0650830 MtrunA17_Chr3g0112341 34.679 545 292 15 84 590 151 669 2.88e-98 313
Msa0650830 MtrunA17_Chr8g0388881 33.151 549 318 15 73 588 87 619 1.21e-96 308
Msa0650830 MtrunA17_Chr1g0171781 33.062 614 330 18 22 588 23 602 8.64e-96 305
Msa0650830 MtrunA17_Chr8g0369481 32.778 540 294 12 89 586 73 585 2.00e-92 296
Msa0650830 MtrunA17_Chr8g0361791 31.362 558 314 10 72 588 70 599 7.30e-92 295
Msa0650830 MtrunA17_Chr4g0055031 31.502 619 338 16 24 588 16 602 1.57e-91 294
Msa0650830 MtrunA17_Chr7g0246681 31.655 556 309 11 75 590 64 588 1.79e-91 293
Msa0650830 MtrunA17_Chr1g0203741 32.963 540 286 13 89 580 95 606 2.26e-90 291
Msa0650830 MtrunA17_Chr5g0435751 34.087 531 294 13 81 587 120 618 2.66e-90 291
Msa0650830 MtrunA17_Chr5g0416991 31.059 557 316 12 72 588 70 598 6.37e-90 290
Msa0650830 MtrunA17_Chr1g0159741 33.459 532 292 16 95 588 151 658 1.59e-89 290
Msa0650830 MtrunA17_Chr8g0350391 32.007 553 300 13 85 588 104 629 2.91e-89 289
Msa0650830 MtrunA17_Chr7g0214551 33.087 541 307 15 82 583 39 563 4.13e-89 286
Msa0650830 MtrunA17_Chr7g0246701 32.423 549 296 13 88 588 103 624 1.92e-88 286
Msa0650830 MtrunA17_Chr3g0092501 32.203 531 291 12 84 576 83 582 2.31e-88 285
Msa0650830 MtrunA17_Chr6g0472571 31.285 537 295 11 89 580 108 615 1.57e-87 284
Msa0650830 MtrunA17_Chr8g0350351 31.295 556 311 13 73 588 75 599 9.33e-87 281
Msa0650830 MtrunA17_Chr5g0409411 31.964 560 310 12 71 586 55 587 2.35e-86 280
Msa0650830 MtrunA17_Chr3g0125511 32.453 530 303 17 96 590 234 743 7.27e-79 264
Msa0650830 MtrunA17_Chr5g0437501 29.706 579 318 18 54 570 41 592 1.39e-77 257
Msa0650830 MtrunA17_Chr3g0113981 30.707 495 278 15 128 590 208 669 6.35e-76 254
Msa0650830 MtrunA17_Chr3g0130381 33.015 524 296 17 95 584 268 770 1.31e-75 256
Msa0650830 MtrunA17_Chr8g0384431 32.480 508 291 16 95 568 298 787 1.08e-74 254
Msa0650830 MtrunA17_Chr1g0155141 31.298 524 308 17 91 590 205 700 3.16e-73 248
Msa0650830 MtrunA17_Chr8g0372471 31.670 521 306 14 95 586 387 886 9.42e-73 250
Msa0650830 MtrunA17_Chr5g0404761 31.338 284 129 6 338 576 1 263 4.22e-37 139
Msa0650830 MtrunA17_Chr5g0404771 32.301 226 136 5 95 315 329 542 4.87e-32 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650830 AT2G03480.2 68.342 597 181 5 1 591 1 595 0.0 858
Msa0650830 AT2G03480.1 65.789 608 189 5 1 591 1 606 0.0 831
Msa0650830 AT1G13860.4 64.169 614 178 5 8 591 2 603 0.0 824
Msa0650830 AT1G13860.3 64.169 614 178 5 8 591 2 603 0.0 824
Msa0650830 AT1G13860.1 64.169 614 178 5 8 591 2 603 0.0 824
Msa0650830 AT1G13860.5 64.169 614 178 5 8 591 2 603 0.0 824
Msa0650830 AT1G13860.2 68.080 448 113 3 173 591 1 447 0.0 655
Msa0650830 AT1G78240.1 53.578 573 224 8 55 591 115 681 0.0 632
Msa0650830 AT1G78240.2 53.578 573 224 8 55 591 115 681 0.0 632
Msa0650830 AT2G03480.3 64.573 398 137 4 1 396 1 396 0.0 531
Msa0650830 AT3G23300.2 33.494 621 343 13 14 589 7 602 2.65e-105 330
Msa0650830 AT3G23300.1 33.494 621 343 13 14 589 7 602 2.65e-105 330
Msa0650830 AT2G39750.1 35.316 538 312 13 77 590 168 693 2.56e-103 327
Msa0650830 AT5G14430.1 33.167 600 316 12 17 567 13 576 7.54e-102 321
Msa0650830 AT5G14430.2 32.833 600 318 12 17 567 13 576 1.17e-100 318
Msa0650830 AT5G04060.1 34.058 552 295 14 77 588 74 596 2.73e-100 317
Msa0650830 AT5G06050.1 34.759 561 289 16 72 588 136 663 7.65e-100 318
Msa0650830 AT4G14360.1 33.650 526 288 9 80 567 70 572 7.80e-100 316
Msa0650830 AT4G14360.2 33.650 526 288 9 80 567 70 572 7.80e-100 316
Msa0650830 AT1G77260.1 32.513 569 306 13 62 586 119 653 6.25e-97 310
Msa0650830 AT1G31850.1 32.668 551 298 13 81 586 71 593 1.45e-96 307
Msa0650830 AT1G31850.2 32.668 551 298 13 81 586 71 593 1.45e-96 307
Msa0650830 AT1G31850.4 32.668 551 298 13 81 586 71 593 1.45e-96 307
Msa0650830 AT1G31850.3 32.668 551 298 13 81 586 71 593 1.45e-96 307
Msa0650830 AT4G19120.1 33.096 562 297 13 69 586 61 587 1.77e-96 307
Msa0650830 AT4G19120.2 33.096 562 297 13 69 586 61 587 1.77e-96 307
Msa0650830 AT3G10200.1 33.212 548 299 14 81 588 67 587 4.05e-96 306
Msa0650830 AT1G04430.1 32.772 534 298 8 84 579 82 592 1.82e-95 305
Msa0650830 AT1G04430.3 32.772 534 298 8 84 579 82 592 1.82e-95 305
Msa0650830 AT1G04430.2 32.772 534 298 8 84 579 82 592 1.82e-95 305
Msa0650830 AT2G43200.2 34.579 535 273 15 88 576 93 596 5.25e-94 301
Msa0650830 AT2G43200.1 34.579 535 273 15 88 576 93 596 5.25e-94 301
Msa0650830 AT4G10440.1 30.177 623 351 14 22 588 21 615 4.81e-92 296
Msa0650830 AT1G26850.2 32.965 543 321 10 77 588 77 607 2.82e-89 288
Msa0650830 AT1G26850.1 32.965 543 321 10 77 588 77 607 2.82e-89 288
Msa0650830 AT1G33170.1 31.876 549 297 13 89 588 113 633 5.58e-89 288
Msa0650830 AT4G00740.1 30.972 607 355 16 20 590 16 594 2.39e-88 286
Msa0650830 AT4G00740.2 30.972 607 355 16 20 590 16 594 2.39e-88 286
Msa0650830 AT3G10200.2 32.755 519 281 14 61 542 51 538 1.85e-87 283
Msa0650830 AT4G00750.1 32.030 537 315 11 89 591 99 619 2.74e-86 281
Msa0650830 AT2G45750.1 31.919 542 292 12 89 580 90 604 6.45e-86 280
Msa0650830 AT4G18030.1 28.110 619 357 12 23 588 19 602 2.62e-81 268
Msa0650830 AT3G56080.1 30.875 583 328 15 28 570 48 595 3.06e-81 267
Msa0650830 AT2G40280.1 30.066 602 338 19 33 590 20 582 8.85e-79 260
Msa0650830 AT2G34300.2 32.417 509 291 14 114 590 271 758 1.15e-78 264
Msa0650830 AT2G34300.3 32.417 509 291 14 114 590 271 758 1.15e-78 264
Msa0650830 AT2G34300.1 32.417 509 291 14 114 590 271 758 1.15e-78 264
Msa0650830 AT1G29470.1 32.136 529 306 16 95 590 250 758 2.18e-78 263
Msa0650830 AT1G29470.2 32.136 529 306 16 95 590 250 758 2.18e-78 263
Msa0650830 AT5G64030.1 32.877 511 291 16 95 571 308 800 6.02e-75 255
Msa0650830 AT1G19430.1 31.423 541 290 18 88 589 223 721 1.41e-74 252
Msa0650830 AT1G19430.3 31.423 541 290 18 88 589 223 721 1.41e-74 252
Msa0650830 AT3G51070.1 31.461 534 304 16 95 590 381 890 1.91e-72 249
Msa0650830 AT3G56080.2 30.855 538 297 15 28 525 48 550 2.38e-69 234
Msa0650830 AT4G19120.3 30.867 473 250 11 69 498 61 499 1.52e-68 231
Msa0650830 AT3G51070.2 32.473 465 255 14 95 521 381 824 4.52e-63 223
Msa0650830 AT1G26850.3 30.394 431 261 7 77 479 77 496 8.68e-54 191
Msa0650830 AT1G19430.2 27.941 408 220 14 88 457 223 594 1.27e-35 142

Find 208 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAGCGTGATTAGTATTT+TGG 0.127843 4_3:+58083450 Msa0650830:CDS
TCGAAGGAATTGGGAGAATT+AGG 0.154357 4_3:-58083108 None:intergenic
AATATTAACCAGTTCAATTT+TGG 0.173409 4_3:-58083430 None:intergenic
TTTATGAAGACATGCATTTC+TGG 0.194109 4_3:+58086563 Msa0650830:CDS
CAGTGGCGAATTCACGATTT+TGG 0.204937 4_3:+58083357 Msa0650830:five_prime_UTR
CAGGGAACGGATTGTTTAAT+TGG 0.219789 4_3:+58088478 Msa0650830:intron
GCGTGTAGCTGTTGATTATT+TGG 0.241569 4_3:+58083573 Msa0650830:CDS
TCTTCATCTCCAGGTCTCTT+TGG 0.249505 4_3:-58086643 None:intergenic
TTGGCTTTCATTACATTGTT+TGG 0.251762 4_3:+58083469 Msa0650830:CDS
AATTGGGAGAATTAGGGTTT+TGG 0.262755 4_3:-58083101 None:intergenic
GGGTTTGAATGCTGCATTGC+TGG 0.274702 4_3:+58086723 Msa0650830:CDS
TTCCTCTAAGTGCTTTAATT+AGG 0.276147 4_3:+58088804 Msa0650830:three_prime_UTR
CGAAGGAATTGGGAGAATTA+GGG 0.285769 4_3:-58083107 None:intergenic
GCCCTATCATCTCCGCAATT+TGG 0.286356 4_3:-58084208 None:intergenic
ATGGACATGAGTTCTAATTA+TGG 0.292273 4_3:+58086700 Msa0650830:CDS
CAGCATGATAGACTTATTCT+TGG 0.317399 4_3:+58087585 Msa0650830:CDS
GGTTTGAAGCAGAAGGAGTT+AGG 0.318276 4_3:+58083619 Msa0650830:CDS
TGTGAATGGCCACGAAATTC+AGG 0.321344 4_3:+58088750 Msa0650830:three_prime_UTR
TTTGTTGTCACTTAAAATAA+TGG 0.323120 4_3:+58084517 Msa0650830:CDS
AATTGTGGGTTTGGTAGCTT+TGG 0.324928 4_3:+58084488 Msa0650830:CDS
GATCAGCTGTAGATAATTAT+TGG 0.329962 4_3:+58086587 Msa0650830:CDS
ACATTCCGGATCATGTTATA+TGG 0.330347 4_3:-58086676 None:intergenic
AGACGAAAGAAATTGATCTT+TGG 0.330539 4_3:-58083854 None:intergenic
TTCAAATCCAGACAACAAAT+TGG 0.335570 4_3:-58083692 None:intergenic
AAAGATCAATTTCTTTCGTC+TGG 0.336418 4_3:+58083856 Msa0650830:CDS
ACTTCAATCTTTACCACAAT+AGG 0.339398 4_3:+58088530 Msa0650830:three_prime_UTR
TGCTGGGTATGCTCTTCCAT+TGG 0.347288 4_3:-58085992 None:intergenic
AAGGATAATCTTCATCTTGC+TGG 0.349161 4_3:+58088833 Msa0650830:three_prime_UTR
GTGCTCAATGTGGCATCATT+TGG 0.350445 4_3:+58084675 Msa0650830:CDS
TGCTTTAATTAGGTTGGTTA+AGG 0.353806 4_3:+58088814 Msa0650830:three_prime_UTR
CAGGTTGGGTCCAAACTGTT+TGG 0.356015 4_3:-58083019 None:intergenic
TCATATGATAATGATGGATA+TGG 0.362326 4_3:-58084641 None:intergenic
AACCTAATTAAAGCACTTAG+AGG 0.363674 4_3:-58088806 None:intergenic
CGCCAAATTGCGGAGATGAT+AGG 0.378623 4_3:+58084206 Msa0650830:CDS
CAGGATGGTTTGATCTTTGA+CGG 0.384835 4_3:+58084167 Msa0650830:CDS
TGGACATGAGTTCTAATTAT+GGG 0.384989 4_3:+58086701 Msa0650830:CDS
ACGAATCGGATCGAAGGAAT+TGG 0.385584 4_3:-58083118 None:intergenic
CAACAACAATCCAAACAGTT+TGG 0.386384 4_3:+58083009 Msa0650830:five_prime_UTR
GTGAAGAAGAGCGCTAATTC+AGG 0.387741 4_3:-58083038 None:intergenic
GCTGGGTATGCTCTTCCATT+GGG 0.388868 4_3:-58085991 None:intergenic
GGAGCGTCCAACAGAGTTGC+TGG 0.390872 4_3:-58086009 None:intergenic
GTAACTGCCAATTTGTTGTC+TGG 0.393469 4_3:+58083685 Msa0650830:CDS
ATCTCGAACGCTAAGATTCA+TGG 0.394359 4_3:+58083238 Msa0650830:five_prime_UTR
CTGGACATTAATTGTGGGTT+TGG 0.405139 4_3:+58084479 Msa0650830:CDS
CAGAAGGAGTTAGGGCTTTG+TGG 0.406998 4_3:+58083628 Msa0650830:CDS
TAACATGATCCGGAATGTTA+TGG 0.408722 4_3:+58086681 Msa0650830:CDS
CAACTGAATCGCAATGAATT+CGG 0.411500 4_3:-58083211 None:intergenic
TGGCATCATTTGGGATGAAA+AGG 0.417107 4_3:+58084685 Msa0650830:CDS
AGATAAAAGTCTCATCTTGC+TGG 0.417299 4_3:-58086036 None:intergenic
TCATGAATGTTGTTCCTGCC+AGG 0.420013 4_3:+58086767 Msa0650830:CDS
CTCAAGTACGTTGGGAAGCC+AGG 0.421484 4_3:+58087954 Msa0650830:CDS
CTGGCAGAAGACTGCTGACC+TGG 0.421513 4_3:+58086057 Msa0650830:CDS
GAACACGGTCAACTTCTATA+AGG 0.422453 4_3:-58085883 None:intergenic
AACTCATGTCCATAACATTC+CGG 0.426140 4_3:-58086690 None:intergenic
CATCTCCAGGTCTCTTTGGA+TGG 0.427344 4_3:-58086639 None:intergenic
TGTTCATCTGTCATGGTGAT+TGG 0.432532 4_3:-58088066 None:intergenic
TTTATTTCTTTATTGTTCAT+CGG 0.437362 4_3:+58088682 Msa0650830:three_prime_UTR
AAATTCCGTTACGTTGGCCT+AGG 0.440632 4_3:+58083794 Msa0650830:CDS
GGCAGTGGATCTTCATCTCC+AGG 0.442838 4_3:-58086652 None:intergenic
TATGATCTGCTTCATGCAAA+TGG 0.446445 4_3:+58087532 Msa0650830:CDS
TAGGGCTTTGTGGAAAAGAA+AGG 0.449648 4_3:+58083638 Msa0650830:CDS
GCCCTAAACCAAAATTGAAC+TGG 0.452625 4_3:+58083422 Msa0650830:CDS
AGAGGCCTTCCTGCTATGAT+TGG 0.454300 4_3:+58084596 Msa0650830:CDS
ACGAAATTCAGGAATGAACT+TGG 0.454309 4_3:+58088761 Msa0650830:three_prime_UTR
AATGAAAACACGAAACGAAT+CGG 0.458168 4_3:-58083132 None:intergenic
TGATTCTTCGCCTAGGAGAC+AGG 0.459410 4_3:+58083513 Msa0650830:CDS
TGCTCAATGTGGCATCATTT+GGG 0.461662 4_3:+58084676 Msa0650830:CDS
TCTAAGTGCTTTAATTAGGT+TGG 0.462273 4_3:+58088808 Msa0650830:three_prime_UTR
TGGTCATGAGAAGCTCTTTG+TGG 0.464411 4_3:+58083377 Msa0650830:exon
ATGTCTTCATAAAACTCTTC+AGG 0.464893 4_3:-58086553 None:intergenic
AAGTTCATTCCTGAATTTCG+TGG 0.465781 4_3:-58088759 None:intergenic
TTGCTGGTGTTATGCATGAC+TGG 0.467884 4_3:+58086827 Msa0650830:CDS
GCTATTCAACTATGTAAAGA+TGG 0.468832 4_3:+58086284 Msa0650830:CDS
ATCACCTACGAGCAAGCTAC+AGG 0.468915 4_3:+58085934 Msa0650830:CDS
TTGAGCAATGTCGATCGATT+GGG 0.469249 4_3:-58083181 None:intergenic
TCAATATCTTGAACCTATTG+TGG 0.471294 4_3:-58088543 None:intergenic
TGCCTCCATATAACATGATC+CGG 0.474515 4_3:+58086671 Msa0650830:CDS
GAGGGAAGGAGATCGGTGTT+TGG 0.475001 4_3:+58083750 Msa0650830:CDS
CGAATCGGATCGAAGGAATT+GGG 0.475512 4_3:-58083117 None:intergenic
ATTTGAACAAGGGGAGGAGC+TGG 0.476097 4_3:+58083708 Msa0650830:CDS
AAGTCTCATCTTGCTGGGCT+AGG 0.477504 4_3:-58086030 None:intergenic
GCCAAATTGCGGAGATGATA+GGG 0.478531 4_3:+58084207 Msa0650830:CDS
GTTACGTTGGCCTAGGGGTA+GGG 0.480364 4_3:+58083801 Msa0650830:CDS
GTGTTTGGTTCGTCCTCCTA+AGG 0.480788 4_3:+58083765 Msa0650830:CDS
GGATGGTCAGAGAAAATTAG+TGG 0.482184 4_3:-58086622 None:intergenic
CTATTCAACTATGTAAAGAT+GGG 0.483883 4_3:+58086285 Msa0650830:CDS
CTGAAATCTGTTTCCAGCGG+TGG 0.483902 4_3:+58083598 Msa0650830:CDS
AGGGCTTTGTGGAAAAGAAA+GGG 0.485039 4_3:+58083639 Msa0650830:CDS
CTAGGGGTAGGGATATTATA+TGG 0.485149 4_3:+58083812 Msa0650830:CDS
ACTTATTCTTGGAGATGGAC+AGG 0.485529 4_3:+58087596 Msa0650830:CDS
CTTCCTCTCATACTCGATAG+AGG 0.487965 4_3:+58086802 Msa0650830:CDS
GTTTGAAGCAGAAGGAGTTA+GGG 0.490196 4_3:+58083620 Msa0650830:CDS
ATAAGCGAAGCCTGTCTCCT+AGG 0.490669 4_3:-58083523 None:intergenic
ATTGAGCAATGTCGATCGAT+TGG 0.491329 4_3:-58083182 None:intergenic
CGTTACGTTGGCCTAGGGGT+AGG 0.493314 4_3:+58083800 Msa0650830:CDS
CTATGCTGGACATTAATTGT+GGG 0.497181 4_3:+58084474 Msa0650830:CDS
ATCATATGTCCGTGGGTAGG+TGG 0.501666 4_3:-58087515 None:intergenic
CGTCTGGAAGTATGACCAAA+AGG 0.505305 4_3:+58083872 Msa0650830:CDS
GGTTTGTGTAGCGGCATATG+AGG 0.505589 4_3:+58084541 Msa0650830:CDS
ATGGTACTACGATAGGTTCA+TGG 0.506764 4_3:+58083257 Msa0650830:five_prime_UTR
CATGAATGTTGTTCCTGCCA+GGG 0.508876 4_3:+58086768 Msa0650830:CDS
GTGAGATTGAAGATTGAGAA+AGG 0.511578 4_3:-58083075 None:intergenic
ACTTGCAACTCAAGTACGTT+GGG 0.511754 4_3:+58087946 Msa0650830:CDS
CAGCGGTGGTTTGAAGCAGA+AGG 0.512739 4_3:+58083612 Msa0650830:CDS
CTCAATCGTTCCCACTGTAT+CGG 0.516495 4_3:-58087912 None:intergenic
GATAGACTTATTCTTGGAGA+TGG 0.517219 4_3:+58087591 Msa0650830:CDS
CAAACCATCCTGTGAGTGAA+AGG 0.520104 4_3:-58084156 None:intergenic
TCAAATTGCCTTTCACTCAC+AGG 0.521415 4_3:+58084148 Msa0650830:CDS
AATTCCGTTACGTTGGCCTA+GGG 0.522095 4_3:+58083795 Msa0650830:CDS
GTTGACCGTGTTCTTAAACC+TGG 0.522848 4_3:+58085893 Msa0650830:CDS
ATAACAGGTTCGAACTATGC+TGG 0.522963 4_3:+58084460 Msa0650830:intron
GAAGAGCGCTAATTCAGGTT+GGG 0.523152 4_3:-58083033 None:intergenic
GCTCTTTGTGGAACAAATTG+TGG 0.523628 4_3:+58083389 Msa0650830:CDS
GATCTCCTTCCCTCGACACT+TGG 0.524776 4_3:-58083741 None:intergenic
TCATATGTCCGTGGGTAGGT+GGG 0.527301 4_3:-58087514 None:intergenic
AGCATACCCAGCAACTCTGT+TGG 0.527719 4_3:+58086002 Msa0650830:CDS
AATATAAAATTCCGTTACGT+TGG 0.527837 4_3:+58083788 Msa0650830:CDS
GTCCGTGGGTAGGTGGGGAA+AGG 0.530884 4_3:-58087508 None:intergenic
ATGAAGTTGCCAATCATAGC+AGG 0.530957 4_3:-58084605 None:intergenic
AAGAAACTGTAGATTGTGAA+AGG 0.532454 4_3:+58088565 Msa0650830:three_prime_UTR
ATTCTGAAGATCAATTATCC+TGG 0.533193 4_3:-58087972 None:intergenic
AACAAGGGGAGGAGCTGGAT+CGG 0.533252 4_3:+58083713 Msa0650830:CDS
AAAGCACTTAGAGGAAGTAA+AGG 0.534144 4_3:-58088797 None:intergenic
GTAGCGGCATATGAGGCAAC+TGG 0.534791 4_3:+58084548 Msa0650830:CDS
GTTAAAACAAAATATCCTCC+AGG 0.535765 4_3:-58085911 None:intergenic
ACTATGCTGGACATTAATTG+TGG 0.536421 4_3:+58084473 Msa0650830:CDS
CGAAATTCAGGAATGAACTT+GGG 0.536683 4_3:+58088762 Msa0650830:three_prime_UTR
TTCATCTTGCTGGAATGCCA+CGG 0.539993 4_3:+58088843 Msa0650830:three_prime_UTR
TCTCAAGAGACAATTGAACT+TGG 0.546341 4_3:-58084574 None:intergenic
CACTGCCAAGTGTCGAGGGA+AGG 0.546528 4_3:+58083736 Msa0650830:CDS
GGACATGAGTTCTAATTATG+GGG 0.548684 4_3:+58086702 Msa0650830:CDS
TTGTTGTCTGGATTTGAACA+AGG 0.549133 4_3:+58083697 Msa0650830:CDS
GATAAAAGTCTCATCTTGCT+GGG 0.549313 4_3:-58086035 None:intergenic
ACCTGGACTGTTATGCATCT+CGG 0.551387 4_3:+58086074 Msa0650830:CDS
CTAGACGTCCCACTTATACA+TGG 0.553190 4_3:-58086341 None:intergenic
ACCGAGATGCATAACAGTCC+AGG 0.555849 4_3:-58086075 None:intergenic
AGGAAGTGCATTATAAGCCC+TGG 0.557714 4_3:-58086785 None:intergenic
TGTGGTAAAGATTGAAGTCA+AGG 0.557946 4_3:-58088525 None:intergenic
CACGAAACGAATCGGATCGA+AGG 0.558810 4_3:-58083124 None:intergenic
CTTCTGCTTCAAACCACCGC+TGG 0.559201 4_3:-58083611 None:intergenic
CATATGTCCGTGGGTAGGTG+GGG 0.559461 4_3:-58087513 None:intergenic
TCATCTTGCTGGAATGCCAC+GGG 0.559838 4_3:+58088844 Msa0650830:three_prime_UTR
GGTAGGGATATTATATGGAG+TGG 0.560775 4_3:+58083817 Msa0650830:CDS
ATCATGTTATATGGAGGCAG+TGG 0.561709 4_3:-58086667 None:intergenic
CAAGCTACAGGGTTCATCGC+GGG 0.562738 4_3:+58085946 Msa0650830:CDS
ATTGCGGAGATGATAGGGCT+AGG 0.563796 4_3:+58084212 Msa0650830:CDS
TCTTAATTCGTCAAATTCAG+TGG 0.563943 4_3:+58083340 Msa0650830:five_prime_UTR
AGGCGAAGAATCAATCGCAT+TGG 0.564383 4_3:-58083503 None:intergenic
GGCATCATTTGGGATGAAAA+GGG 0.564906 4_3:+58084686 Msa0650830:CDS
AAGTATCACGTTGAACCCAA+TGG 0.567548 4_3:+58085976 Msa0650830:CDS
AAGATTCATGGTACTACGAT+AGG 0.568604 4_3:+58083250 Msa0650830:five_prime_UTR
AAGTGTCGAGGGAAGGAGAT+CGG 0.570175 4_3:+58083743 Msa0650830:CDS
GATACAGAGCTTCCTCAAGC+TGG 0.571400 4_3:+58084239 Msa0650830:CDS
ATCGGCACTGCCAAGTGTCG+AGG 0.573901 4_3:+58083731 Msa0650830:CDS
CACTTGCAACTCAAGTACGT+TGG 0.574089 4_3:+58087945 Msa0650830:CDS
AGGATAATTGATCTTCAGAA+TGG 0.576325 4_3:+58087974 Msa0650830:CDS
ATTGAGAAAGGAAATGTGAA+TGG 0.581187 4_3:-58083063 None:intergenic
AGAAGAGCGCTAATTCAGGT+TGG 0.582736 4_3:-58083034 None:intergenic
AACCTTTCCCCACCTACCCA+CGG 0.584376 4_3:+58087506 Msa0650830:CDS
TGTTGTCTGGATTTGAACAA+GGG 0.584953 4_3:+58083698 Msa0650830:CDS
AATAATGGCGGTTTGTGTAG+CGG 0.585041 4_3:+58084532 Msa0650830:CDS
GTAGGGATATTATATGGAGT+GGG 0.586026 4_3:+58083818 Msa0650830:CDS
AAAATTGTGTTCATCTGTCA+TGG 0.586965 4_3:-58088073 None:intergenic
ATGCGATTGATTCTTCGCCT+AGG 0.593349 4_3:+58083506 Msa0650830:CDS
ATTGCCTTTCACTCACAGGA+TGG 0.595160 4_3:+58084152 Msa0650830:CDS
TCTGACCATCCAAAGAGACC+TGG 0.597424 4_3:+58086634 Msa0650830:CDS
GAGCGTCCAACAGAGTTGCT+GGG 0.597757 4_3:-58086008 None:intergenic
GTTCAATTGTCTCTTGAGAG+AGG 0.597892 4_3:+58084578 Msa0650830:CDS
AGATTACTCTCGCCAAATTG+CGG 0.598637 4_3:+58084196 Msa0650830:CDS
GTCTGGATTTGAACAAGGGG+AGG 0.599371 4_3:+58083702 Msa0650830:CDS
TTATTTATACAAATTACAGA+AGG 0.601455 4_3:+58083542 Msa0650830:CDS
TTTCATTCAATCAATTCCGC+CGG 0.602867 4_3:+58083148 Msa0650830:five_prime_UTR
GTTGTCACTTAAAATAATGG+CGG 0.607184 4_3:+58084520 Msa0650830:CDS
TCGGCACTGCCAAGTGTCGA+GGG 0.609587 4_3:+58083732 Msa0650830:CDS
ATCCTCCAGGTTTAAGAACA+CGG 0.611539 4_3:-58085898 None:intergenic
GACATGAGTTCTAATTATGG+GGG 0.612104 4_3:+58086703 Msa0650830:CDS
ACCATGTCATATGATAATGA+TGG 0.612723 4_3:-58084647 None:intergenic
AGTGCATTATAAGCCCTGGC+AGG 0.615051 4_3:-58086781 None:intergenic
TCGATTGGGATTCAGATCGC+CGG 0.616385 4_3:-58083167 None:intergenic
TGAAGCAGATCATATGTCCG+TGG 0.620399 4_3:-58087523 None:intergenic
CCACTTATACATGGTACAAG+TGG 0.623728 4_3:-58086332 None:intergenic
AAACCTCTATCGAGTATGAG+AGG 0.624690 4_3:-58086805 None:intergenic
CATATAATATCCCTACCCCT+AGG 0.626144 4_3:-58083811 None:intergenic
GTTGTCTGGATTTGAACAAG+GGG 0.627393 4_3:+58083699 Msa0650830:CDS
GAAATTCAGGAATGAACTTG+GGG 0.628975 4_3:+58088763 Msa0650830:three_prime_UTR
TCTGGCAAACAAGTAACCGC+TGG 0.630480 4_3:-58088003 None:intergenic
GAAGCAGATCATATGTCCGT+GGG 0.637899 4_3:-58087522 None:intergenic
CAGATCATATGTCCGTGGGT+AGG 0.645203 4_3:-58087518 None:intergenic
GAGCTGAAATCTGTTTCCAG+CGG 0.647557 4_3:+58083595 Msa0650830:CDS
TACAGTGGGAACGATTGAGA+TGG 0.647875 4_3:+58087916 Msa0650830:CDS
TTTGAATGCTGCATTGCTGG+AGG 0.649123 4_3:+58086726 Msa0650830:CDS
ATTCCGTTACGTTGGCCTAG+GGG 0.651302 4_3:+58083796 Msa0650830:CDS
TTCCGGATCATGTTATATGG+AGG 0.654047 4_3:-58086673 None:intergenic
TTCAGAATGGCAGTGACCAG+CGG 0.655775 4_3:+58087987 Msa0650830:CDS
GGAAGACTTACACCAGCTTG+AGG 0.658019 4_3:-58084251 None:intergenic
TATTCAACTATGTAAAGATG+GGG 0.658313 4_3:+58086286 Msa0650830:CDS
GAACCCTGTAGCTTGCTCGT+AGG 0.661400 4_3:-58085938 None:intergenic
GAGAAAGGAAATGTGAATGG+TGG 0.661998 4_3:-58083060 None:intergenic
TCACCTACGAGCAAGCTACA+GGG 0.664233 4_3:+58085935 Msa0650830:CDS
TCCATCATTATCATATGACA+TGG 0.664798 4_3:+58084646 Msa0650830:CDS
GACCGTGTTCTTAAACCTGG+AGG 0.671928 4_3:+58085896 Msa0650830:CDS
CTACCCCTAGGCCAACGTAA+CGG 0.672375 4_3:-58083799 None:intergenic
ATTGGGATTCAGATCGCCGG+CGG 0.673739 4_3:-58083164 None:intergenic
AGTTGCCAATCATAGCAGGA+AGG 0.692650 4_3:-58084601 None:intergenic
TTGGCAGTTACATTGTGACA+AGG 0.692917 4_3:-58083673 None:intergenic
GCAAGCTACAGGGTTCATCG+CGG 0.701719 4_3:+58085945 Msa0650830:CDS
GGACAGGATACTACGACCAG+AGG 0.704211 4_3:+58087612 Msa0650830:CDS
ATGGTTCACTGTGCTCAATG+TGG 0.736335 4_3:+58084665 Msa0650830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTTTGAATTTTTTT+TGG + chr4_3:58083300-58083319 Msa0650830:five_prime_UTR 10.0%
!! TAATAATATTGAACTATTAA+TGG + chr4_3:58085369-58085388 Msa0650830:intron 10.0%
!!! TATGTTTATTTATCTTTTAT+AGG + chr4_3:58085470-58085489 Msa0650830:intron 10.0%
!!! TTCATTGTTAATTTTTTTTA+AGG + chr4_3:58087682-58087701 Msa0650830:intron 10.0%
!! TTATTTATACAAATTACAGA+AGG + chr4_3:58083542-58083561 Msa0650830:CDS 15.0%
!!! AAAAGTAATGTAGTTTTTAT+TGG + chr4_3:58084033-58084052 Msa0650830:intron 15.0%
!!! TATTTTGTTCATAATATAAC+AGG + chr4_3:58084445-58084464 Msa0650830:intron 15.0%
!!! AAAAGGGTAATTTTTTTATT+AGG + chr4_3:58084702-58084721 Msa0650830:intron 15.0%
!! TTATATCATCTAAATATGTT+TGG + chr4_3:58085620-58085639 Msa0650830:intron 15.0%
!!! ATATTTTGACATTTAATTCA+AGG + chr4_3:58087148-58087167 Msa0650830:intron 15.0%
!!! ATTTTTTCAAAAATAGTTTC+TGG - chr4_3:58088024-58088043 None:intergenic 15.0%
!!! TTTATTTCTTTATTGTTCAT+CGG + chr4_3:58088682-58088701 Msa0650830:three_prime_UTR 15.0%
!!! AATATTAACCAGTTCAATTT+TGG - chr4_3:58083433-58083452 None:intergenic 20.0%
!!! TTTGTTGTCACTTAAAATAA+TGG + chr4_3:58084517-58084536 Msa0650830:CDS 20.0%
!!! CTTTTGCATATATTTTGTAA+CGG + chr4_3:58084994-58085013 Msa0650830:intron 20.0%
!! ATCTAGTAAAACTGTATAAA+CGG - chr4_3:58085273-58085292 None:intergenic 20.0%
!! TTAATAAATACATAGACTAC+TGG - chr4_3:58085592-58085611 None:intergenic 20.0%
!! ACCAATCAAATGAATTAATT+AGG + chr4_3:58085687-58085706 Msa0650830:intron 20.0%
!! TCCTAATTAATTCATTTGAT+TGG - chr4_3:58085691-58085710 None:intergenic 20.0%
!! ATTATGTTATAGAAAAGTCA+TGG - chr4_3:58085788-58085807 None:intergenic 20.0%
!! ATAAAGAGAAATTCATGAAA+AGG - chr4_3:58086517-58086536 None:intergenic 20.0%
!! TCTATAATTTATAAACTGAC+TGG + chr4_3:58086886-58086905 Msa0650830:intron 20.0%
!!! GATTATTTTATTGCTGAAAA+TGG + chr4_3:58087063-58087082 Msa0650830:intron 20.0%
!!! TGCTTTTTAAAGGAAATTAT+TGG - chr4_3:58087195-58087214 None:intergenic 20.0%
!! TTTCAAATTCATTCTCAAAA+GGG - chr4_3:58087314-58087333 None:intergenic 20.0%
!!! TAATTTTTTTTAAGGTGTAG+TGG + chr4_3:58087690-58087709 Msa0650830:intron 20.0%
!! ATAATTGTTTATAAGCAAGT+TGG + chr4_3:58087782-58087801 Msa0650830:intron 20.0%
!! ACGATGTGTATTAAAAAATT+AGG - chr4_3:58087865-58087884 None:intergenic 20.0%
!!! TTTTCTTGATTTGGTAAAAA+TGG + chr4_3:58088149-58088168 Msa0650830:intron 20.0%
!!! TTTCTTGATTTGGTAAAAAT+GGG + chr4_3:58088150-58088169 Msa0650830:intron 20.0%
!!! TTAGTTAGTTTAAAACATCA+TGG + chr4_3:58088180-58088199 Msa0650830:intron 20.0%
!!! TACAATTCATTTTTTTGTCA+AGG + chr4_3:58088605-58088624 Msa0650830:three_prime_UTR 20.0%
!! AAAAAATGCTAACAAGATAT+TGG - chr4_3:58088653-58088672 None:intergenic 20.0%
!! AACAAATTGTGGATGATTTT+CGG + chr4_3:58083400-58083419 Msa0650830:CDS 25.0%
!! ATTAAGCGTGATTAGTATTT+TGG + chr4_3:58083450-58083469 Msa0650830:CDS 25.0%
!! AACGGAATTTTATATTCCTT+AGG - chr4_3:58083784-58083803 None:intergenic 25.0%
! AATATAAAATTCCGTTACGT+TGG + chr4_3:58083788-58083807 Msa0650830:CDS 25.0%
!!! GATTCAATGGTTTTTAAGTT+TGG + chr4_3:58083991-58084010 Msa0650830:intron 25.0%
!! TAGTTTTTATTGGATCTTTG+TGG + chr4_3:58084043-58084062 Msa0650830:intron 25.0%
!! AGTTTTTATTGGATCTTTGT+GGG + chr4_3:58084044-58084063 Msa0650830:intron 25.0%
!!! AATCACCAATTGTTGTTTTT+TGG + chr4_3:58084283-58084302 Msa0650830:intron 25.0%
!!! ATCACCAATTGTTGTTTTTT+GGG + chr4_3:58084284-58084303 Msa0650830:intron 25.0%
! CATTAATGACAATTTAGAAG+AGG - chr4_3:58084390-58084409 None:intergenic 25.0%
!!! TCATATGATAATGATGGATA+TGG - chr4_3:58084644-58084663 None:intergenic 25.0%
!! TTTTGCGTATATTTTGTAAC+CGG - chr4_3:58084906-58084925 None:intergenic 25.0%
! TCAAAGAAAGTTGTTGTATT+TGG + chr4_3:58084931-58084950 Msa0650830:intron 25.0%
!!! GATGTATTTGGTTCAAATTT+TGG - chr4_3:58084958-58084977 None:intergenic 25.0%
!! ACCAAATACATCAATTTTGT+TGG + chr4_3:58084966-58084985 Msa0650830:intron 25.0%
! TCCAACAAAATTGATGTATT+TGG - chr4_3:58084970-58084989 None:intergenic 25.0%
!! ATTTTATATCTCTAACACAC+AGG - chr4_3:58085136-58085155 None:intergenic 25.0%
!! ATCCAACAATTCAAGTTTAT+GGG + chr4_3:58085170-58085189 Msa0650830:intron 25.0%
! TTAAAAGTAATAACGTGTCA+AGG - chr4_3:58085205-58085224 None:intergenic 25.0%
! TAGATTTCAGAACTAAATAG+TGG + chr4_3:58085288-58085307 Msa0650830:intron 25.0%
! AGATTTCAGAACTAAATAGT+GGG + chr4_3:58085289-58085308 Msa0650830:intron 25.0%
! CTCATAAATTGCATACTATT+TGG + chr4_3:58085412-58085431 Msa0650830:intron 25.0%
! GTTTGGATTTATTAAATCAC+AGG + chr4_3:58085637-58085656 Msa0650830:intron 25.0%
! GAAGAAAAAGAAAGATAATG+GGG - chr4_3:58085718-58085737 None:intergenic 25.0%
! GGAAGAAAAAGAAAGATAAT+GGG - chr4_3:58085719-58085738 None:intergenic 25.0%
! TGGAAGAAAAAGAAAGATAA+TGG - chr4_3:58085720-58085739 None:intergenic 25.0%
!!! AAGGATATTTTTAGTAGTGT+AGG + chr4_3:58086098-58086117 Msa0650830:intron 25.0%
! CTATTCAACTATGTAAAGAT+GGG + chr4_3:58086285-58086304 Msa0650830:CDS 25.0%
! TATTCAACTATGTAAAGATG+GGG + chr4_3:58086286-58086305 Msa0650830:CDS 25.0%
! GAATTTCTCTTTATTATTGC+AGG + chr4_3:58086523-58086542 Msa0650830:intron 25.0%
! TATTGCTGAAAATGGTTTAA+TGG + chr4_3:58087071-58087090 Msa0650830:intron 25.0%
!!! ATATGTAGCATGCTTTTTAA+AGG - chr4_3:58087205-58087224 None:intergenic 25.0%
! ATGCTACATATAGTCATATA+CGG + chr4_3:58087214-58087233 Msa0650830:intron 25.0%
! GAGAAAACAAACTGAATTTA+TGG - chr4_3:58087256-58087275 None:intergenic 25.0%
! GAAACAAAATTAAGAAGCTA+AGG - chr4_3:58087292-58087311 None:intergenic 25.0%
! CTTTCAAATTCATTCTCAAA+AGG - chr4_3:58087315-58087334 None:intergenic 25.0%
! CAAAGCTCTTTGTAAAATAA+TGG + chr4_3:58087421-58087440 Msa0650830:intron 25.0%
! AAATGTTGATATTGATCTTC+AGG + chr4_3:58087479-58087498 Msa0650830:intron 25.0%
! TTCATTTCACTATTCAAACT+GGG + chr4_3:58088122-58088141 Msa0650830:intron 25.0%
!! TTTTGATCTGACAATATTAC+AGG - chr4_3:58088332-58088351 None:intergenic 25.0%
! TCACTATTTATACGATTTCA+GGG + chr4_3:58088460-58088479 Msa0650830:intron 25.0%
!!! TTTTTGAGAAAGAATGTGAA+TGG + chr4_3:58088736-58088755 Msa0650830:three_prime_UTR 25.0%
ATTGAGAAAGGAAATGTGAA+TGG - chr4_3:58083066-58083085 None:intergenic 30.0%
AATGAAAACACGAAACGAAT+CGG - chr4_3:58083135-58083154 None:intergenic 30.0%
TCTTAATTCGTCAAATTCAG+TGG + chr4_3:58083340-58083359 Msa0650830:five_prime_UTR 30.0%
!!! ACCAGTTCAATTTTGGTTTA+GGG - chr4_3:58083426-58083445 None:intergenic 30.0%
!!! AACCAGTTCAATTTTGGTTT+AGG - chr4_3:58083427-58083446 None:intergenic 30.0%
! TTGGCTTTCATTACATTGTT+TGG + chr4_3:58083469-58083488 Msa0650830:CDS 30.0%
TTCAAATCCAGACAACAAAT+TGG - chr4_3:58083695-58083714 None:intergenic 30.0%
! GGAATTTTATATTCCTTAGG+AGG - chr4_3:58083781-58083800 None:intergenic 30.0%
AGACGAAAGAAATTGATCTT+TGG - chr4_3:58083857-58083876 None:intergenic 30.0%
AAAGATCAATTTCTTTCGTC+TGG + chr4_3:58083856-58083875 Msa0650830:CDS 30.0%
TAGTTACAGACAACTTACAA+GGG - chr4_3:58083965-58083984 None:intergenic 30.0%
! GTAACTACTGATTGATTCAA+TGG + chr4_3:58083978-58083997 Msa0650830:intron 30.0%
!!! TGGTTTTTAAGTTTGGATGA+TGG + chr4_3:58083998-58084017 Msa0650830:intron 30.0%
!!! TCACCAATTGTTGTTTTTTG+GGG + chr4_3:58084285-58084304 Msa0650830:intron 30.0%
GACAATTTAGAAGAGGATAT+AGG - chr4_3:58084383-58084402 None:intergenic 30.0%
! GTTGTCACTTAAAATAATGG+CGG + chr4_3:58084520-58084539 Msa0650830:CDS 30.0%
TCCATCATTATCATATGACA+TGG + chr4_3:58084646-58084665 Msa0650830:CDS 30.0%
! ACCATGTCATATGATAATGA+TGG - chr4_3:58084650-58084669 None:intergenic 30.0%
! TTTGCGTATATTTTGTAACC+GGG - chr4_3:58084905-58084924 None:intergenic 30.0%
! TTGCATATATTTTGTAACGG+AGG + chr4_3:58084997-58085016 Msa0650830:intron 30.0%
!! TGCATATATTTTGTAACGGA+GGG + chr4_3:58084998-58085017 Msa0650830:intron 30.0%
AAACTTGAATTGTTGGATGA+AGG - chr4_3:58085168-58085187 None:intergenic 30.0%
! CATCCAACAATTCAAGTTTA+TGG + chr4_3:58085169-58085188 Msa0650830:intron 30.0%
ATCCCATAAACTTGAATTGT+TGG - chr4_3:58085175-58085194 None:intergenic 30.0%
AGTAAAACTGTATAAACGGA+GGG - chr4_3:58085269-58085288 None:intergenic 30.0%
TAGTAAAACTGTATAAACGG+AGG - chr4_3:58085270-58085289 None:intergenic 30.0%
CTTAATGGAAAAGCTCTTTA+AGG - chr4_3:58085341-58085360 None:intergenic 30.0%
! TAAAGAGCTTTTCCATTAAG+AGG + chr4_3:58085341-58085360 Msa0650830:intron 30.0%
ATTATTAGCATGCCTCTTAA+TGG - chr4_3:58085356-58085375 None:intergenic 30.0%
TATGAGTATCTGCAATTAGA+AGG - chr4_3:58085398-58085417 None:intergenic 30.0%
! TAGGCTGATTTAAAATACCT+CGG + chr4_3:58085489-58085508 Msa0650830:intron 30.0%
AATCATAAATGTTCCCTTCT+AGG - chr4_3:58085521-58085540 None:intergenic 30.0%
TGTTATAGAAAAGTCATGGA+AGG - chr4_3:58085784-58085803 None:intergenic 30.0%
ATAGCATTTCATACATAAGC+TGG - chr4_3:58085820-58085839 None:intergenic 30.0%
GTTAAAACAAAATATCCTCC+AGG - chr4_3:58085914-58085933 None:intergenic 30.0%
GCTATTCAACTATGTAAAGA+TGG + chr4_3:58086284-58086303 Msa0650830:CDS 30.0%
TGTACTCAATTCAGAATCAA+AGG - chr4_3:58086396-58086415 None:intergenic 30.0%
AAGGAAAAGCAGAACAAAAT+GGG - chr4_3:58086498-58086517 None:intergenic 30.0%
AAAGGAAAAGCAGAACAAAA+TGG - chr4_3:58086499-58086518 None:intergenic 30.0%
ATGTCTTCATAAAACTCTTC+AGG - chr4_3:58086556-58086575 None:intergenic 30.0%
TTTATGAAGACATGCATTTC+TGG + chr4_3:58086563-58086582 Msa0650830:CDS 30.0%
GATCAGCTGTAGATAATTAT+TGG + chr4_3:58086587-58086606 Msa0650830:CDS 30.0%
! ATGGACATGAGTTCTAATTA+TGG + chr4_3:58086700-58086719 Msa0650830:CDS 30.0%
! TGGACATGAGTTCTAATTAT+GGG + chr4_3:58086701-58086720 Msa0650830:CDS 30.0%
! ATACATTTATCAGGCTTTAG+TGG - chr4_3:58086950-58086969 None:intergenic 30.0%
GTAAGAGACATACATTTATC+AGG - chr4_3:58086959-58086978 None:intergenic 30.0%
TACCAAATAAGAAGTTGCTA+GGG - chr4_3:58087124-58087143 None:intergenic 30.0%
TTACCAAATAAGAAGTTGCT+AGG - chr4_3:58087125-58087144 None:intergenic 30.0%
TGCTACATATAGTCATATAC+GGG + chr4_3:58087215-58087234 Msa0650830:intron 30.0%
! GTAAAATAATGGTAATGCGT+AGG + chr4_3:58087432-58087451 Msa0650830:intron 30.0%
!!! ATACACATCGTTATTTTTGC+AGG + chr4_3:58087874-58087893 Msa0650830:intron 30.0%
!!! TACACATCGTTATTTTTGCA+GGG + chr4_3:58087875-58087894 Msa0650830:intron 30.0%
!!! ATCATTTTTTCCGATACAGT+GGG + chr4_3:58087902-58087921 Msa0650830:CDS 30.0%
! ATTCTGAAGATCAATTATCC+TGG - chr4_3:58087975-58087994 None:intergenic 30.0%
AGGATAATTGATCTTCAGAA+TGG + chr4_3:58087974-58087993 Msa0650830:CDS 30.0%
AAAATTGTGTTCATCTGTCA+TGG - chr4_3:58088076-58088095 None:intergenic 30.0%
!!! TGAACACAATTTTTTTGCTC+TGG + chr4_3:58088083-58088102 Msa0650830:three_prime_UTR 30.0%
CTTCATTTCACTATTCAAAC+TGG + chr4_3:58088121-58088140 Msa0650830:intron 30.0%
! CTGGGTAAATTTTCTTGATT+TGG + chr4_3:58088140-58088159 Msa0650830:intron 30.0%
AAAACAAGATCCATATCTGA+AGG - chr4_3:58088272-58088291 None:intergenic 30.0%
!! TTCAGATATGGATCTTGTTT+TGG + chr4_3:58088271-58088290 Msa0650830:intron 30.0%
AAACTCTGCAATTCAGAAAA+TGG + chr4_3:58088380-58088399 Msa0650830:intron 30.0%
GTCACTATTTATACGATTTC+AGG + chr4_3:58088459-58088478 Msa0650830:intron 30.0%
ATTTATACGATTTCAGGGAA+CGG + chr4_3:58088465-58088484 Msa0650830:intron 30.0%
ACTTCAATCTTTACCACAAT+AGG + chr4_3:58088530-58088549 Msa0650830:three_prime_UTR 30.0%
TCAATATCTTGAACCTATTG+TGG - chr4_3:58088546-58088565 None:intergenic 30.0%
AAGAAACTGTAGATTGTGAA+AGG + chr4_3:58088565-58088584 Msa0650830:three_prime_UTR 30.0%
TCACATTCTTTCTCAAAAAC+TGG - chr4_3:58088735-58088754 None:intergenic 30.0%
TTCCTCTAAGTGCTTTAATT+AGG + chr4_3:58088804-58088823 Msa0650830:three_prime_UTR 30.0%
! AACCTAATTAAAGCACTTAG+AGG - chr4_3:58088809-58088828 None:intergenic 30.0%
TCTAAGTGCTTTAATTAGGT+TGG + chr4_3:58088808-58088827 Msa0650830:three_prime_UTR 30.0%
!! TGCTTTAATTAGGTTGGTTA+AGG + chr4_3:58088814-58088833 Msa0650830:three_prime_UTR 30.0%
CAGAGAGAGAGAGATATATA+AGG + chr4_3:58082945-58082964 Msa0650830:five_prime_UTR 35.0%
CAACAACAATCCAAACAGTT+TGG + chr4_3:58083009-58083028 Msa0650830:five_prime_UTR 35.0%
GTGAGATTGAAGATTGAGAA+AGG - chr4_3:58083078-58083097 None:intergenic 35.0%
! AATTGGGAGAATTAGGGTTT+TGG - chr4_3:58083104-58083123 None:intergenic 35.0%
TTTCATTCAATCAATTCCGC+CGG + chr4_3:58083148-58083167 Msa0650830:five_prime_UTR 35.0%
CAACTGAATCGCAATGAATT+CGG - chr4_3:58083214-58083233 None:intergenic 35.0%
AAGATTCATGGTACTACGAT+AGG + chr4_3:58083250-58083269 Msa0650830:five_prime_UTR 35.0%
TTGTTGTCTGGATTTGAACA+AGG + chr4_3:58083697-58083716 Msa0650830:CDS 35.0%
TGTTGTCTGGATTTGAACAA+GGG + chr4_3:58083698-58083717 Msa0650830:CDS 35.0%
GTAGGGATATTATATGGAGT+GGG + chr4_3:58083818-58083837 Msa0650830:CDS 35.0%
! CTTACAAGGGTTTGAAATTG+CGG - chr4_3:58083952-58083971 None:intergenic 35.0%
GTAGTTACAGACAACTTACA+AGG - chr4_3:58083966-58083985 None:intergenic 35.0%
! AGAAATCATCGCGACAATTT+TGG - chr4_3:58084103-58084122 None:intergenic 35.0%
GTTCCCCAAAAAACAACAAT+TGG - chr4_3:58084291-58084310 None:intergenic 35.0%
!!! GACTGGTTTTGTACATAACA+TGG + chr4_3:58084327-58084346 Msa0650830:intron 35.0%
GTACATAACATGGTTCAGTA+CGG + chr4_3:58084337-58084356 Msa0650830:intron 35.0%
ACTATGCTGGACATTAATTG+TGG + chr4_3:58084473-58084492 Msa0650830:CDS 35.0%
CTATGCTGGACATTAATTGT+GGG + chr4_3:58084474-58084493 Msa0650830:CDS 35.0%
TCTCAAGAGACAATTGAACT+TGG - chr4_3:58084577-58084596 None:intergenic 35.0%
CTCTTTCATTCTTAGCTGAA+TGG + chr4_3:58084732-58084751 Msa0650830:intron 35.0%
AGAGACTATACTGACAAAGA+GGG - chr4_3:58084787-58084806 None:intergenic 35.0%
AAGAGACTATACTGACAAAG+AGG - chr4_3:58084788-58084807 None:intergenic 35.0%
! TTGCGTATATTTTGTAACCG+GGG - chr4_3:58084904-58084923 None:intergenic 35.0%
AGTAAGAGAGAAAACTGTGT+AGG + chr4_3:58085021-58085040 Msa0650830:intron 35.0%
GTAAGAGAGAAAACTGTGTA+GGG + chr4_3:58085022-58085041 Msa0650830:intron 35.0%
CTGAAACCAATTAGTGATTG+AGG + chr4_3:58085068-58085087 Msa0650830:intron 35.0%
ACCAGTCTGTATCATTTCAA+GGG - chr4_3:58085103-58085122 None:intergenic 35.0%
! AAATGATACAGACTGGTCAA+CGG + chr4_3:58085106-58085125 Msa0650830:intron 35.0%
! AGGCTGATTTAAAATACCTC+GGG + chr4_3:58085490-58085509 Msa0650830:intron 35.0%
! TCTAGATCTAAGTCACTTTC+TGG + chr4_3:58085545-58085564 Msa0650830:intron 35.0%
TGGAAAGAGCAAAAAGGAAA+AGG - chr4_3:58085760-58085779 None:intergenic 35.0%
ATAGAAAAGTCATGGAAGGA+TGG - chr4_3:58085780-58085799 None:intergenic 35.0%
GATAAAAGTCTCATCTTGCT+GGG - chr4_3:58086038-58086057 None:intergenic 35.0%
AGATAAAAGTCTCATCTTGC+TGG - chr4_3:58086039-58086058 None:intergenic 35.0%
! AGCAAGATGAGACTTTTATC+TGG + chr4_3:58086038-58086057 Msa0650830:CDS 35.0%
TTATCGTAGCAAGTGATCAA+CGG - chr4_3:58086209-58086228 None:intergenic 35.0%
CACTTGTACCATGTATAAGT+GGG + chr4_3:58086333-58086352 Msa0650830:intron 35.0%
AGAAATTTCAGAGAAGGAAG+AGG - chr4_3:58086473-58086492 None:intergenic 35.0%
TGGGAAAGAAATTTCAGAGA+AGG - chr4_3:58086479-58086498 None:intergenic 35.0%
ACATTCCGGATCATGTTATA+TGG - chr4_3:58086679-58086698 None:intergenic 35.0%
TAACATGATCCGGAATGTTA+TGG + chr4_3:58086681-58086700 Msa0650830:CDS 35.0%
AACTCATGTCCATAACATTC+CGG - chr4_3:58086693-58086712 None:intergenic 35.0%
! GGACATGAGTTCTAATTATG+GGG + chr4_3:58086702-58086721 Msa0650830:CDS 35.0%
! GACATGAGTTCTAATTATGG+GGG + chr4_3:58086703-58086722 Msa0650830:CDS 35.0%
ATTGCTGGAGGAGAAAAAAT+CGG + chr4_3:58086738-58086757 Msa0650830:CDS 35.0%
!! GAGTTAAGACTTTTGGTTGA+GGG + chr4_3:58086908-58086927 Msa0650830:intron 35.0%
TTCCCTAGCAACTTCTTATT+TGG + chr4_3:58087119-58087138 Msa0650830:intron 35.0%
GCTACATATAGTCATATACG+GGG + chr4_3:58087216-58087235 Msa0650830:intron 35.0%
TTAAGAAGCTAAGGATGTCT+TGG - chr4_3:58087283-58087302 None:intergenic 35.0%
CAAAGAAGAGAATTCAGTGA+TGG - chr4_3:58087390-58087409 None:intergenic 35.0%
CATCACTGAATTCTCTTCTT+TGG + chr4_3:58087388-58087407 Msa0650830:intron 35.0%
TATGATCTGCTTCATGCAAA+TGG + chr4_3:58087532-58087551 Msa0650830:CDS 35.0%
CAGCATGATAGACTTATTCT+TGG + chr4_3:58087585-58087604 Msa0650830:CDS 35.0%
GATAGACTTATTCTTGGAGA+TGG + chr4_3:58087591-58087610 Msa0650830:CDS 35.0%
ATAGACCTTCACATTACACT+GGG - chr4_3:58087838-58087857 None:intergenic 35.0%
!!! GATCATTTTTTCCGATACAG+TGG + chr4_3:58087901-58087920 Msa0650830:CDS 35.0%
!!! TCTTGTTTTGGCTCTAACAT+AGG + chr4_3:58088283-58088302 Msa0650830:intron 35.0%
!!! CTTGTTTTGGCTCTAACATA+GGG + chr4_3:58088284-58088303 Msa0650830:intron 35.0%
AATATTACAGGATGACACAC+GGG - chr4_3:58088320-58088339 None:intergenic 35.0%
CAATATTACAGGATGACACA+CGG - chr4_3:58088321-58088340 None:intergenic 35.0%
TAGGAGGACTTTAGTTATCA+AGG - chr4_3:58088359-58088378 None:intergenic 35.0%
TTCTGAATTGCAGAGTTTCT+AGG - chr4_3:58088378-58088397 None:intergenic 35.0%
TTCAGATGTATGCTATAGCT+AGG - chr4_3:58088432-58088451 None:intergenic 35.0%
TGTGGTAAAGATTGAAGTCA+AGG - chr4_3:58088528-58088547 None:intergenic 35.0%
AAGTTCATTCCTGAATTTCG+TGG - chr4_3:58088762-58088781 None:intergenic 35.0%
ACGAAATTCAGGAATGAACT+TGG + chr4_3:58088761-58088780 Msa0650830:three_prime_UTR 35.0%
CGAAATTCAGGAATGAACTT+GGG + chr4_3:58088762-58088781 Msa0650830:three_prime_UTR 35.0%
GAAATTCAGGAATGAACTTG+GGG + chr4_3:58088763-58088782 Msa0650830:three_prime_UTR 35.0%
! AAAGCACTTAGAGGAAGTAA+AGG - chr4_3:58088800-58088819 None:intergenic 35.0%
AAGGATAATCTTCATCTTGC+TGG + chr4_3:58088833-58088852 Msa0650830:three_prime_UTR 35.0%
GAGAAAGGAAATGTGAATGG+TGG - chr4_3:58083063-58083082 None:intergenic 40.0%
CGAAGGAATTGGGAGAATTA+GGG - chr4_3:58083110-58083129 None:intergenic 40.0%
TCGAAGGAATTGGGAGAATT+AGG - chr4_3:58083111-58083130 None:intergenic 40.0%
TTGAGCAATGTCGATCGATT+GGG - chr4_3:58083184-58083203 None:intergenic 40.0%
ATTGAGCAATGTCGATCGAT+TGG - chr4_3:58083185-58083204 None:intergenic 40.0%
ATCTCGAACGCTAAGATTCA+TGG + chr4_3:58083238-58083257 Msa0650830:five_prime_UTR 40.0%
ATGGTACTACGATAGGTTCA+TGG + chr4_3:58083257-58083276 Msa0650830:five_prime_UTR 40.0%
GCTCTTTGTGGAACAAATTG+TGG + chr4_3:58083389-58083408 Msa0650830:CDS 40.0%
GCCCTAAACCAAAATTGAAC+TGG + chr4_3:58083422-58083441 Msa0650830:CDS 40.0%
! GCGTGTAGCTGTTGATTATT+TGG + chr4_3:58083573-58083592 Msa0650830:CDS 40.0%
! GTTTGAAGCAGAAGGAGTTA+GGG + chr4_3:58083620-58083639 Msa0650830:CDS 40.0%
! TAGGGCTTTGTGGAAAAGAA+AGG + chr4_3:58083638-58083657 Msa0650830:CDS 40.0%
! AGGGCTTTGTGGAAAAGAAA+GGG + chr4_3:58083639-58083658 Msa0650830:CDS 40.0%
TTGGCAGTTACATTGTGACA+AGG - chr4_3:58083676-58083695 None:intergenic 40.0%
!! GTAACTGCCAATTTGTTGTC+TGG + chr4_3:58083685-58083704 Msa0650830:CDS 40.0%
GTTGTCTGGATTTGAACAAG+GGG + chr4_3:58083699-58083718 Msa0650830:CDS 40.0%
CATATAATATCCCTACCCCT+AGG - chr4_3:58083814-58083833 None:intergenic 40.0%
CTAGGGGTAGGGATATTATA+TGG + chr4_3:58083812-58083831 Msa0650830:CDS 40.0%
GGTAGGGATATTATATGGAG+TGG + chr4_3:58083817-58083836 Msa0650830:CDS 40.0%
!! GTATGACCAAAAGGTACTCT+CGG + chr4_3:58083881-58083900 Msa0650830:intron 40.0%
!!! CTAATACCGAGAGTACCTTT+TGG - chr4_3:58083890-58083909 None:intergenic 40.0%
!! GCGACAATTTTGGTAAGTGA+CGG - chr4_3:58084093-58084112 None:intergenic 40.0%
ATTGTCGCGATGATTTCTCT+AGG + chr4_3:58084105-58084124 Msa0650830:intron 40.0%
TCAAATTGCCTTTCACTCAC+AGG + chr4_3:58084148-58084167 Msa0650830:CDS 40.0%
CAGGATGGTTTGATCTTTGA+CGG + chr4_3:58084167-58084186 Msa0650830:CDS 40.0%
AGATTACTCTCGCCAAATTG+CGG + chr4_3:58084196-58084215 Msa0650830:CDS 40.0%
! CAATTGGTGATTATGACGAG+TGG - chr4_3:58084275-58084294 None:intergenic 40.0%
ATAACAGGTTCGAACTATGC+TGG + chr4_3:58084460-58084479 Msa0650830:intron 40.0%
CTGGACATTAATTGTGGGTT+TGG + chr4_3:58084479-58084498 Msa0650830:CDS 40.0%
! AATTGTGGGTTTGGTAGCTT+TGG + chr4_3:58084488-58084507 Msa0650830:CDS 40.0%
AATAATGGCGGTTTGTGTAG+CGG + chr4_3:58084532-58084551 Msa0650830:CDS 40.0%
GTTCAATTGTCTCTTGAGAG+AGG + chr4_3:58084578-58084597 Msa0650830:CDS 40.0%
ATGAAGTTGCCAATCATAGC+AGG - chr4_3:58084608-58084627 None:intergenic 40.0%
TGCTCAATGTGGCATCATTT+GGG + chr4_3:58084676-58084695 Msa0650830:CDS 40.0%
! TGGCATCATTTGGGATGAAA+AGG + chr4_3:58084685-58084704 Msa0650830:CDS 40.0%
! GGCATCATTTGGGATGAAAA+GGG + chr4_3:58084686-58084705 Msa0650830:CDS 40.0%
ACTATACTGACAAAGAGGGT+TGG - chr4_3:58084783-58084802 None:intergenic 40.0%
TTTGATGAGAAATACTCCCC+CGG + chr4_3:58084884-58084903 Msa0650830:intron 40.0%
! TGCGTATATTTTGTAACCGG+GGG - chr4_3:58084903-58084922 None:intergenic 40.0%
TGTGTAGGGTGTACAGTATT+TGG + chr4_3:58085036-58085055 Msa0650830:intron 40.0%
CTGATGCCTCAATCACTAAT+TGG - chr4_3:58085077-58085096 None:intergenic 40.0%
GACCAGTCTGTATCATTTCA+AGG - chr4_3:58085104-58085123 None:intergenic 40.0%
AAGAGTCGATAGAGATGCTA+TGG - chr4_3:58085442-58085461 None:intergenic 40.0%
AGGCAATGAGATCAAGAGAA+TGG - chr4_3:58085740-58085759 None:intergenic 40.0%
GAAGGATGGAAAGAGCAAAA+AGG - chr4_3:58085766-58085785 None:intergenic 40.0%
AGGTCATTGTTAGAGCTCAA+AGG - chr4_3:58085843-58085862 None:intergenic 40.0%
AACATTCCATCTGCATGATG+AGG - chr4_3:58085863-58085882 None:intergenic 40.0%
GAACACGGTCAACTTCTATA+AGG - chr4_3:58085886-58085905 None:intergenic 40.0%
ATCCTCCAGGTTTAAGAACA+CGG - chr4_3:58085901-58085920 None:intergenic 40.0%
AAGTATCACGTTGAACCCAA+TGG + chr4_3:58085976-58085995 Msa0650830:CDS 40.0%
! TTACTAGCAGTAGTTGATGC+AGG - chr4_3:58086171-58086190 None:intergenic 40.0%
CCACTTATACATGGTACAAG+TGG - chr4_3:58086335-58086354 None:intergenic 40.0%
CCACTTGTACCATGTATAAG+TGG + chr4_3:58086332-58086351 Msa0650830:intron 40.0%
GCTGGATTGCAATACAAAAC+AGG + chr4_3:58086369-58086388 Msa0650830:intron 40.0%
ACAGCTGAGCTTGAAATTCA+TGG + chr4_3:58086413-58086432 Msa0650830:intron 40.0%
GGATGGTCAGAGAAAATTAG+TGG - chr4_3:58086625-58086644 None:intergenic 40.0%
ATCATGTTATATGGAGGCAG+TGG - chr4_3:58086670-58086689 None:intergenic 40.0%
TGCCTCCATATAACATGATC+CGG + chr4_3:58086671-58086690 Msa0650830:CDS 40.0%
TTCCGGATCATGTTATATGG+AGG - chr4_3:58086676-58086695 None:intergenic 40.0%
AAACCTCTATCGAGTATGAG+AGG - chr4_3:58086808-58086827 None:intergenic 40.0%
! ATACTCGATAGAGGTTTTGC+TGG + chr4_3:58086811-58086830 Msa0650830:CDS 40.0%
! CTGACTGGAGTTAAGACTTT+TGG + chr4_3:58086901-58086920 Msa0650830:intron 40.0%
!! GGAGTTAAGACTTTTGGTTG+AGG + chr4_3:58086907-58086926 Msa0650830:intron 40.0%
TATGTCTCTTACACTCTCAC+TGG + chr4_3:58086967-58086986 Msa0650830:intron 40.0%
GCATGGTGTTCCTTAGAATT+GGG - chr4_3:58087353-58087372 None:intergenic 40.0%
TGGAACTACAAAACAACGCA+TGG - chr4_3:58087370-58087389 None:intergenic 40.0%
! AATGGTAATGCGTAGGAACT+TGG + chr4_3:58087439-58087458 Msa0650830:intron 40.0%
ACTTATTCTTGGAGATGGAC+AGG + chr4_3:58087596-58087615 Msa0650830:CDS 40.0%
AAACACCAAGATCATACCTC+TGG - chr4_3:58087631-58087650 None:intergenic 40.0%
GTGTACTTTCCATCCTCTTT+GGG + chr4_3:58087723-58087742 Msa0650830:intron 40.0%
TTTGGGAACAACCTTCAGAA+AGG + chr4_3:58087740-58087759 Msa0650830:intron 40.0%
GATGAGATCATCCTTTCTGA+AGG - chr4_3:58087754-58087773 None:intergenic 40.0%
CATAGACCTTCACATTACAC+TGG - chr4_3:58087839-58087858 None:intergenic 40.0%
!!! CATCGTTATTTTTGCAGGGA+TGG + chr4_3:58087879-58087898 Msa0650830:intron 40.0%
ACTTGCAACTCAAGTACGTT+GGG + chr4_3:58087946-58087965 Msa0650830:CDS 40.0%
TGTTCATCTGTCATGGTGAT+TGG - chr4_3:58088069-58088088 None:intergenic 40.0%
CAAGATCCATATCTGAAGGA+AGG - chr4_3:58088268-58088287 None:intergenic 40.0%
! TGAATTGCAGAGTTTCTAGG+AGG - chr4_3:58088375-58088394 None:intergenic 40.0%
!! CAGGGAACGGATTGTTTAAT+TGG + chr4_3:58088478-58088497 Msa0650830:intron 40.0%
!! GAAGAGCGCTAATTCAGGTT+GGG - chr4_3:58083036-58083055 None:intergenic 45.0%
!! AGAAGAGCGCTAATTCAGGT+TGG - chr4_3:58083037-58083056 None:intergenic 45.0%
!! GTGAAGAAGAGCGCTAATTC+AGG - chr4_3:58083041-58083060 None:intergenic 45.0%
CGAATCGGATCGAAGGAATT+GGG - chr4_3:58083120-58083139 None:intergenic 45.0%
ACGAATCGGATCGAAGGAAT+TGG - chr4_3:58083121-58083140 None:intergenic 45.0%
! CAGTGGCGAATTCACGATTT+TGG + chr4_3:58083357-58083376 Msa0650830:five_prime_UTR 45.0%
TGGTCATGAGAAGCTCTTTG+TGG + chr4_3:58083377-58083396 Msa0650830:exon 45.0%
AGGCGAAGAATCAATCGCAT+TGG - chr4_3:58083506-58083525 None:intergenic 45.0%
! ATGCGATTGATTCTTCGCCT+AGG + chr4_3:58083506-58083525 Msa0650830:CDS 45.0%
GAGCTGAAATCTGTTTCCAG+CGG + chr4_3:58083595-58083614 Msa0650830:CDS 45.0%
! GGTTTGAAGCAGAAGGAGTT+AGG + chr4_3:58083619-58083638 Msa0650830:CDS 45.0%
! AAATTCCGTTACGTTGGCCT+AGG + chr4_3:58083794-58083813 Msa0650830:CDS 45.0%
! AATTCCGTTACGTTGGCCTA+GGG + chr4_3:58083795-58083814 Msa0650830:CDS 45.0%
! CGTCTGGAAGTATGACCAAA+AGG + chr4_3:58083872-58083891 Msa0650830:CDS 45.0%
ATTGCCTTTCACTCACAGGA+TGG + chr4_3:58084152-58084171 Msa0650830:CDS 45.0%
CAAACCATCCTGTGAGTGAA+AGG - chr4_3:58084159-58084178 None:intergenic 45.0%
GCCAAATTGCGGAGATGATA+GGG + chr4_3:58084207-58084226 Msa0650830:CDS 45.0%
! TGGGGAACCATGATGTTTTG+TGG + chr4_3:58084303-58084322 Msa0650830:intron 45.0%
! GGGGAACCATGATGTTTTGT+GGG + chr4_3:58084304-58084323 Msa0650830:intron 45.0%
! GGGAACCATGATGTTTTGTG+GGG + chr4_3:58084305-58084324 Msa0650830:intron 45.0%
AGTTGCCAATCATAGCAGGA+AGG - chr4_3:58084604-58084623 None:intergenic 45.0%
ATGGTTCACTGTGCTCAATG+TGG + chr4_3:58084665-58084684 Msa0650830:CDS 45.0%
GTGCTCAATGTGGCATCATT+TGG + chr4_3:58084675-58084694 Msa0650830:CDS 45.0%
GCCCTTGAAATGATACAGAC+TGG + chr4_3:58085099-58085118 Msa0650830:intron 45.0%
TAAACGGAGGGTGACAAGTA+TGG - chr4_3:58085257-58085276 None:intergenic 45.0%
!! GGTTTGCTTTTGCCTGTTTG+TGG + chr4_3:58085566-58085585 Msa0650830:intron 45.0%
ATAGACTACTGGCCACAAAC+AGG - chr4_3:58085581-58085600 None:intergenic 45.0%
CAATGACCTCATCATGCAGA+TGG + chr4_3:58085854-58085873 Msa0650830:intron 45.0%
GTTGACCGTGTTCTTAAACC+TGG + chr4_3:58085893-58085912 Msa0650830:CDS 45.0%
ACCTGGACTGTTATGCATCT+CGG + chr4_3:58086074-58086093 Msa0650830:CDS 45.0%
GACTGTTATGCATCTCGGTA+AGG + chr4_3:58086079-58086098 Msa0650830:intron 45.0%
CTAGACGTCCCACTTATACA+TGG - chr4_3:58086344-58086363 None:intergenic 45.0%
TCTTCATCTCCAGGTCTCTT+TGG - chr4_3:58086646-58086665 None:intergenic 45.0%
TTTGAATGCTGCATTGCTGG+AGG + chr4_3:58086726-58086745 Msa0650830:CDS 45.0%
TGGAGGAGAAAAAATCGGTG+TGG + chr4_3:58086743-58086762 Msa0650830:CDS 45.0%
GGAGGAGAAAAAATCGGTGT+GGG + chr4_3:58086744-58086763 Msa0650830:CDS 45.0%
TCATGAATGTTGTTCCTGCC+AGG + chr4_3:58086767-58086786 Msa0650830:CDS 45.0%
CATGAATGTTGTTCCTGCCA+GGG + chr4_3:58086768-58086787 Msa0650830:CDS 45.0%
! AGGAAGTGCATTATAAGCCC+TGG - chr4_3:58086788-58086807 None:intergenic 45.0%
CTTCCTCTCATACTCGATAG+AGG + chr4_3:58086802-58086821 Msa0650830:CDS 45.0%
!! TTGCTGGTGTTATGCATGAC+TGG + chr4_3:58086827-58086846 Msa0650830:CDS 45.0%
CGCATGGTGTTCCTTAGAAT+TGG - chr4_3:58087354-58087373 None:intergenic 45.0%
GAAGCAGATCATATGTCCGT+GGG - chr4_3:58087525-58087544 None:intergenic 45.0%
TGAAGCAGATCATATGTCCG+TGG - chr4_3:58087526-58087545 None:intergenic 45.0%
! TACGACCAGAGGTATGATCT+TGG + chr4_3:58087623-58087642 Msa0650830:intron 45.0%
CGTGTACTTTCCATCCTCTT+TGG + chr4_3:58087722-58087741 Msa0650830:intron 45.0%
AAGGTTGTTCCCAAAGAGGA+TGG - chr4_3:58087735-58087754 None:intergenic 45.0%
TCTGAAGGTTGTTCCCAAAG+AGG - chr4_3:58087739-58087758 None:intergenic 45.0%
TCGATCCCAGTGTAATGTGA+AGG + chr4_3:58087830-58087849 Msa0650830:intron 45.0%
CTCAATCGTTCCCACTGTAT+CGG - chr4_3:58087915-58087934 None:intergenic 45.0%
TACAGTGGGAACGATTGAGA+TGG + chr4_3:58087916-58087935 Msa0650830:CDS 45.0%
CACTTGCAACTCAAGTACGT+TGG + chr4_3:58087945-58087964 Msa0650830:CDS 45.0%
AGACCTTGAGTCTCACATGA+CGG - chr4_3:58088224-58088243 None:intergenic 45.0%
GTGAGACTCAAGGTCTGAAT+TGG + chr4_3:58088228-58088247 Msa0650830:intron 45.0%
CAGACTCCTTCCTTCAGATA+TGG + chr4_3:58088259-58088278 Msa0650830:intron 45.0%
TGTGAATGGCCACGAAATTC+AGG + chr4_3:58088750-58088769 Msa0650830:three_prime_UTR 45.0%
TTCATCTTGCTGGAATGCCA+CGG + chr4_3:58088843-58088862 Msa0650830:three_prime_UTR 45.0%
! CAGGTTGGGTCCAAACTGTT+TGG - chr4_3:58083022-58083041 None:intergenic 50.0%
CACGAAACGAATCGGATCGA+AGG - chr4_3:58083127-58083146 None:intergenic 50.0%
TCGATTGGGATTCAGATCGC+CGG - chr4_3:58083170-58083189 None:intergenic 50.0%
TGATTCTTCGCCTAGGAGAC+AGG + chr4_3:58083513-58083532 Msa0650830:CDS 50.0%
ATAAGCGAAGCCTGTCTCCT+AGG - chr4_3:58083526-58083545 None:intergenic 50.0%
CTGAAATCTGTTTCCAGCGG+TGG + chr4_3:58083598-58083617 Msa0650830:CDS 50.0%
CAGAAGGAGTTAGGGCTTTG+TGG + chr4_3:58083628-58083647 Msa0650830:CDS 50.0%
GTCTGGATTTGAACAAGGGG+AGG + chr4_3:58083702-58083721 Msa0650830:CDS 50.0%
ATTTGAACAAGGGGAGGAGC+TGG + chr4_3:58083708-58083727 Msa0650830:CDS 50.0%
!! AAGTGTCGAGGGAAGGAGAT+CGG + chr4_3:58083743-58083762 Msa0650830:CDS 50.0%
! GTGTTTGGTTCGTCCTCCTA+AGG + chr4_3:58083765-58083784 Msa0650830:CDS 50.0%
! ATTCCGTTACGTTGGCCTAG+GGG + chr4_3:58083796-58083815 Msa0650830:CDS 50.0%
CGCCAAATTGCGGAGATGAT+AGG + chr4_3:58084206-58084225 Msa0650830:CDS 50.0%
GCCCTATCATCTCCGCAATT+TGG - chr4_3:58084211-58084230 None:intergenic 50.0%
ATTGCGGAGATGATAGGGCT+AGG + chr4_3:58084212-58084231 Msa0650830:CDS 50.0%
GATACAGAGCTTCCTCAAGC+TGG + chr4_3:58084239-58084258 Msa0650830:CDS 50.0%
GGAAGACTTACACCAGCTTG+AGG - chr4_3:58084254-58084273 None:intergenic 50.0%
CCAGTCCCCACAAAACATCA+TGG - chr4_3:58084313-58084332 None:intergenic 50.0%
! CCATGATGTTTTGTGGGGAC+TGG + chr4_3:58084310-58084329 Msa0650830:intron 50.0%
GGTTTGTGTAGCGGCATATG+AGG + chr4_3:58084541-58084560 Msa0650830:CDS 50.0%
AGAGGCCTTCCTGCTATGAT+TGG + chr4_3:58084596-58084615 Msa0650830:CDS 50.0%
TACCTCGGGAAAGACCTAGA+AGG + chr4_3:58085504-58085523 Msa0650830:intron 50.0%
ACCTCGGGAAAGACCTAGAA+GGG + chr4_3:58085505-58085524 Msa0650830:intron 50.0%
GACCGTGTTCTTAAACCTGG+AGG + chr4_3:58085896-58085915 Msa0650830:CDS 50.0%
ATCACCTACGAGCAAGCTAC+AGG + chr4_3:58085934-58085953 Msa0650830:CDS 50.0%
TCACCTACGAGCAAGCTACA+GGG + chr4_3:58085935-58085954 Msa0650830:CDS 50.0%
GCTGGGTATGCTCTTCCATT+GGG - chr4_3:58085994-58086013 None:intergenic 50.0%
TGCTGGGTATGCTCTTCCAT+TGG - chr4_3:58085995-58086014 None:intergenic 50.0%
AGCATACCCAGCAACTCTGT+TGG + chr4_3:58086002-58086021 Msa0650830:CDS 50.0%
AAGTCTCATCTTGCTGGGCT+AGG - chr4_3:58086033-58086052 None:intergenic 50.0%
ACCGAGATGCATAACAGTCC+AGG - chr4_3:58086078-58086097 None:intergenic 50.0%
TCTGACCATCCAAAGAGACC+TGG + chr4_3:58086634-58086653 Msa0650830:CDS 50.0%
CATCTCCAGGTCTCTTTGGA+TGG - chr4_3:58086642-58086661 None:intergenic 50.0%
GGGTTTGAATGCTGCATTGC+TGG + chr4_3:58086723-58086742 Msa0650830:CDS 50.0%
AGTGCATTATAAGCCCTGGC+AGG - chr4_3:58086784-58086803 None:intergenic 50.0%
GCAGCATGCACCCAATTCTA+AGG + chr4_3:58087340-58087359 Msa0650830:intron 50.0%
TCATATGTCCGTGGGTAGGT+GGG - chr4_3:58087517-58087536 None:intergenic 50.0%
ATCATATGTCCGTGGGTAGG+TGG - chr4_3:58087518-58087537 None:intergenic 50.0%
CAGATCATATGTCCGTGGGT+AGG - chr4_3:58087521-58087540 None:intergenic 50.0%
! TTCCTTTTTCCTGATCGCGC+TGG + chr4_3:58087654-58087673 Msa0650830:intron 50.0%
TTCCAGCGCGATCAGGAAAA+AGG - chr4_3:58087659-58087678 None:intergenic 50.0%
TGAAACTTTCCAGCGCGATC+AGG - chr4_3:58087666-58087685 None:intergenic 50.0%
TTCAGAATGGCAGTGACCAG+CGG + chr4_3:58087987-58088006 Msa0650830:CDS 50.0%
TCTGGCAAACAAGTAACCGC+TGG - chr4_3:58088006-58088025 None:intergenic 50.0%
GACCTTGAGTCTCACATGAC+GGG - chr4_3:58088223-58088242 None:intergenic 50.0%
TCATCTTGCTGGAATGCCAC+GGG + chr4_3:58088844-58088863 Msa0650830:three_prime_UTR 50.0%
ATTGGGATTCAGATCGCCGG+CGG - chr4_3:58083167-58083186 None:intergenic 55.0%
CTTCTGCTTCAAACCACCGC+TGG - chr4_3:58083614-58083633 None:intergenic 55.0%
! CAGCGGTGGTTTGAAGCAGA+AGG + chr4_3:58083612-58083631 Msa0650830:CDS 55.0%
AACAAGGGGAGGAGCTGGAT+CGG + chr4_3:58083713-58083732 Msa0650830:CDS 55.0%
GATCTCCTTCCCTCGACACT+TGG - chr4_3:58083744-58083763 None:intergenic 55.0%
! GAGGGAAGGAGATCGGTGTT+TGG + chr4_3:58083750-58083769 Msa0650830:CDS 55.0%
CTACCCCTAGGCCAACGTAA+CGG - chr4_3:58083802-58083821 None:intergenic 55.0%
! GTTACGTTGGCCTAGGGGTA+GGG + chr4_3:58083801-58083820 Msa0650830:CDS 55.0%
GTAGCGGCATATGAGGCAAC+TGG + chr4_3:58084548-58084567 Msa0650830:CDS 55.0%
TCCCTTCTAGGTCTTTCCCG+AGG - chr4_3:58085509-58085528 None:intergenic 55.0%
!! GAACCCTGTAGCTTGCTCGT+AGG - chr4_3:58085941-58085960 None:intergenic 55.0%
GCAAGCTACAGGGTTCATCG+CGG + chr4_3:58085945-58085964 Msa0650830:CDS 55.0%
CAAGCTACAGGGTTCATCGC+GGG + chr4_3:58085946-58085965 Msa0650830:CDS 55.0%
GAGCGTCCAACAGAGTTGCT+GGG - chr4_3:58086011-58086030 None:intergenic 55.0%
GGCAGTGGATCTTCATCTCC+AGG - chr4_3:58086655-58086674 None:intergenic 55.0%
AACCTTTCCCCACCTACCCA+CGG + chr4_3:58087506-58087525 Msa0650830:CDS 55.0%
CATATGTCCGTGGGTAGGTG+GGG - chr4_3:58087516-58087535 None:intergenic 55.0%
GGACAGGATACTACGACCAG+AGG + chr4_3:58087612-58087631 Msa0650830:CDS 55.0%
CTCAAGTACGTTGGGAAGCC+AGG + chr4_3:58087954-58087973 Msa0650830:CDS 55.0%
TGCCCGTCATGTGAGACTCA+AGG + chr4_3:58088218-58088237 Msa0650830:intron 55.0%
! GGCTCTAACATAGGGTCCCA+CGG + chr4_3:58088292-58088311 Msa0650830:intron 55.0%
GCTCTAACATAGGGTCCCAC+GGG + chr4_3:58088293-58088312 Msa0650830:intron 55.0%
! ATCGGCACTGCCAAGTGTCG+AGG + chr4_3:58083731-58083750 Msa0650830:CDS 60.0%
!! TCGGCACTGCCAAGTGTCGA+GGG + chr4_3:58083732-58083751 Msa0650830:CDS 60.0%
!! CACTGCCAAGTGTCGAGGGA+AGG + chr4_3:58083736-58083755 Msa0650830:CDS 60.0%
! CGTTACGTTGGCCTAGGGGT+AGG + chr4_3:58083800-58083819 Msa0650830:CDS 60.0%
! GGAGCGTCCAACAGAGTTGC+TGG - chr4_3:58086012-58086031 None:intergenic 60.0%
CTGGCAGAAGACTGCTGACC+TGG + chr4_3:58086057-58086076 Msa0650830:CDS 60.0%
GTGGGACGTCTAGCAAGCGC+TGG + chr4_3:58086351-58086370 Msa0650830:intron 65.0%
GTCCGTGGGTAGGTGGGGAA+AGG - chr4_3:58087511-58087530 None:intergenic 65.0%
GGATGACACACGGGACCCGT+GGG - chr4_3:58088311-58088330 None:intergenic 65.0%
AGGATGACACACGGGACCCG+TGG - chr4_3:58088312-58088331 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58082944 58088876 58082944 ID=Msa0650830;Name=Msa0650830
chr4_3 mRNA 58082944 58088876 58082944 ID=Msa0650830-mRNA-1;Parent=Msa0650830;Name=Msa0650830-mRNA-1;_AED=0.09;_eAED=0.09;_QI=438|0.87|0.88|1|0.75|0.66|9|455|591
chr4_3 exon 58082944 58083893 58082944 ID=Msa0650830-mRNA-1:exon:15317;Parent=Msa0650830-mRNA-1
chr4_3 exon 58084127 58084262 58084127 ID=Msa0650830-mRNA-1:exon:15318;Parent=Msa0650830-mRNA-1
chr4_3 exon 58084467 58084707 58084467 ID=Msa0650830-mRNA-1:exon:15319;Parent=Msa0650830-mRNA-1
chr4_3 exon 58085873 58086095 58085873 ID=Msa0650830-mRNA-1:exon:15320;Parent=Msa0650830-mRNA-1
chr4_3 exon 58086274 58086350 58086274 ID=Msa0650830-mRNA-1:exon:15321;Parent=Msa0650830-mRNA-1
chr4_3 exon 58086545 58086848 58086545 ID=Msa0650830-mRNA-1:exon:15322;Parent=Msa0650830-mRNA-1
chr4_3 exon 58087501 58087633 58087501 ID=Msa0650830-mRNA-1:exon:15323;Parent=Msa0650830-mRNA-1
chr4_3 exon 58087896 58088104 58087896 ID=Msa0650830-mRNA-1:exon:15324;Parent=Msa0650830-mRNA-1
chr4_3 exon 58088481 58088876 58088481 ID=Msa0650830-mRNA-1:exon:15325;Parent=Msa0650830-mRNA-1
chr4_3 five_prime_UTR 58082944 58083381 58082944 ID=Msa0650830-mRNA-1:five_prime_utr;Parent=Msa0650830-mRNA-1
chr4_3 CDS 58083382 58083893 58083382 ID=Msa0650830-mRNA-1:cds;Parent=Msa0650830-mRNA-1
chr4_3 CDS 58084127 58084262 58084127 ID=Msa0650830-mRNA-1:cds;Parent=Msa0650830-mRNA-1
chr4_3 CDS 58084467 58084707 58084467 ID=Msa0650830-mRNA-1:cds;Parent=Msa0650830-mRNA-1
chr4_3 CDS 58085873 58086095 58085873 ID=Msa0650830-mRNA-1:cds;Parent=Msa0650830-mRNA-1
chr4_3 CDS 58086274 58086350 58086274 ID=Msa0650830-mRNA-1:cds;Parent=Msa0650830-mRNA-1
chr4_3 CDS 58086545 58086848 58086545 ID=Msa0650830-mRNA-1:cds;Parent=Msa0650830-mRNA-1
chr4_3 CDS 58087501 58087633 58087501 ID=Msa0650830-mRNA-1:cds;Parent=Msa0650830-mRNA-1
chr4_3 CDS 58087896 58088045 58087896 ID=Msa0650830-mRNA-1:cds;Parent=Msa0650830-mRNA-1
chr4_3 three_prime_UTR 58088046 58088104 58088046 ID=Msa0650830-mRNA-1:three_prime_utr;Parent=Msa0650830-mRNA-1
chr4_3 three_prime_UTR 58088481 58088876 58088481 ID=Msa0650830-mRNA-1:three_prime_utr;Parent=Msa0650830-mRNA-1
Gene Sequence

>Msa0650830

ATGAGAAGCTCTTTGTGGAACAAATTGTGGATGATTTTCGGCCCTAAACCAAAATTGAACTGGTTAATATTAAGCGTGATTAGTATTTTGGCTTTCATTACATTGTTTGGTTCGTCATCTTCCAATGCGATTGATTCTTCGCCTAGGAGACAGGCTTCGCTTATTTATACAAATTACAGAAGGATTAAAGAGCGTGTAGCTGTTGATTATTTGGAGCTGAAATCTGTTTCCAGCGGTGGTTTGAAGCAGAAGGAGTTAGGGCTTTGTGGAAAAGAAAGGGAGAATTTTGTGCCTTGTCACAATGTAACTGCCAATTTGTTGTCTGGATTTGAACAAGGGGAGGAGCTGGATCGGCACTGCCAAGTGTCGAGGGAAGGAGATCGGTGTTTGGTTCGTCCTCCTAAGGAATATAAAATTCCGTTACGTTGGCCTAGGGGTAGGGATATTATATGGAGTGGGAATGTGAAGATAACCAAAGATCAATTTCTTTCGTCTGGAAGTATGACCAAAAGGTTGATGCTACTAGAAGAGAATCAAATTGCCTTTCACTCACAGGATGGTTTGATCTTTGACGGTGTGAAAGATTACTCTCGCCAAATTGCGGAGATGATAGGGCTAGGAAGTGATACAGAGCTTCCTCAAGCTGGTGTTCGAACTATGCTGGACATTAATTGTGGGTTTGGTAGCTTTGGAGCTCATTTGTTGTCACTTAAAATAATGGCGGTTTGTGTAGCGGCATATGAGGCAACTGGCAGCCAAGTTCAATTGTCTCTTGAGAGAGGCCTTCCTGCTATGATTGGCAACTTCATTGCAAGACAGCTTCCATATCCATCATTATCATATGACATGGTTCACTGTGCTCAATGTGGCATCATTTGGGATGAAAAGGATGGAATGTTCCTTATAGAAGTTGACCGTGTTCTTAAACCTGGAGGATATTTTGTTTTAACATCACCTACGAGCAAGCTACAGGGTTCATCGCGGGAGAAAAAAAGTATCACGTTGAACCCAATGGAAGAGCATACCCAGCAACTCTGTTGGACGCTCCTAGCCCAGCAAGATGAGACTTTTATCTGGCAGAAGACTGCTGACCTGGACTGTTATGCATCTCGCAAGCAGCGTGCTATTCAACTATGTAAAGATGGGGATGAAACTCAATCATATTATCAGCCACTTGTACCATGTATAAGAGTTCAGCCTGAAGAGTTTTATGAAGACATGCATTTCTGGAGATCAGCTGTAGATAATTATTGGTCACTGCTTACGCCACTAATTTTCTCTGACCATCCAAAGAGACCTGGAGATGAAGATCCACTGCCTCCATATAACATGATCCGGAATGTTATGGACATGAGTTCTAATTATGGGGGTTTGAATGCTGCATTGCTGGAGGAGAAAAAATCGGTGTGGGTCATGAATGTTGTTCCTGCCAGGGCTTATAATGCACTTCCTCTCATACTCGATAGAGGTTTTGCTGGTGTTATGCATGACTGGTGTGAACCTTTCCCCACCTACCCACGGACATATGATCTGCTTCATGCAAATGGACTTCTGTCACAATTCATTTCAGAACGCTGCAGCATGATAGACTTATTCTTGGAGATGGACAGGATACTACGACCAGAGGGATGGATCATTTTTTCCGATACAGTGGGAACGATTGAGATGGCTCGCACACTTGCAACTCAAGTACGTTGGGAAGCCAGGATAATTGATCTTCAGAATGGCAGTGACCAGCGGTTACTTGTTTGCCAGAAACTATTTTTGAAAAAATGA
Protein sequence

>Msa0650830

MRSSLWNKLWMIFGPKPKLNWLILSVISILAFITLFGSSSSNAIDSSPRRQASLIYTNYRRIKERVAVDYLELKSVSSGGLKQKELGLCGKERENFVPCHNVTANLLSGFEQGEELDRHCQVSREGDRCLVRPPKEYKIPLRWPRGRDIIWSGNVKITKDQFLSSGSMTKRLMLLEENQIAFHSQDGLIFDGVKDYSRQIAEMIGLGSDTELPQAGVRTMLDINCGFGSFGAHLLSLKIMAVCVAAYEATGSQVQLSLERGLPAMIGNFIARQLPYPSLSYDMVHCAQCGIIWDEKDGMFLIEVDRVLKPGGYFVLTSPTSKLQGSSREKKSITLNPMEEHTQQLCWTLLAQQDETFIWQKTADLDCYASRKQRAIQLCKDGDETQSYYQPLVPCIRVQPEEFYEDMHFWRSAVDNYWSLLTPLIFSDHPKRPGDEDPLPPYNMIRNVMDMSSNYGGLNAALLEEKKSVWVMNVVPARAYNALPLILDRGFAGVMHDWCEPFPTYPRTYDLLHANGLLSQFISERCSMIDLFLEMDRILRPEGWIIFSDTVGTIEMARTLATQVRWEARIIDLQNGSDQRLLVCQKLFLKK*