AlfalfaGEDB | Msa0222570

M. sativa cultivar zhongmu-4 / Msa0222570

KEGG: K13435
GO: GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0140096 GO:1901564 GO:1901700
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222570	XP_003597308.1	44.131	213	19	4	878	990	611	823	2.37e-30	142
Msa0222570	XP_003597308.1	97.396	845	21	1	1	844	1	845	0.0	1703

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222570	sp\|Q9LX66\|HERK_ARATH	65.175	827	269	9	21	844	18	828	0.0	1076
Msa0222570	sp\|Q9LX66\|HERK_ARATH	37.089	213	33	4	878	989	593	805	1.05e-23	111

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222570	G7IUA3	44.131	213	19	4	878	990	611	823	1.13e-30	142
Msa0222570	G7IUA3	97.396	845	21	1	1	844	1	845	0.0	1703

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0138810	Msa0222570	0.833476	5.218259e-56	-8.615850e-47
Msa0222570	Msa1026770	0.870471	1.423136e-66	-8.615850e-47
Msa0222570	Msa1026800	0.874597	5.963443e-68	-8.615850e-47
Msa0222570	Msa1111770	0.815794	7.700498e-52	-8.615850e-47
Msa0222570	Msa1452090	0.837961	3.816307e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222570	MtrunA17_Chr2g0327671	97.396	845	21	1	1	844	1	845	0.0	1703
Msa0222570	MtrunA17_Chr2g0327671	44.131	213	19	4	878	990	611	823	2.18e-34	142
Msa0222570	MtrunA17_Chr4g0030441	73.389	838	210	8	10	844	11	838	0.0	1234
Msa0222570	MtrunA17_Chr4g0030441	38.424	203	25	3	878	980	608	810	4.00e-25	112
Msa0222570	MtrunA17_Chr2g0318301	53.430	831	355	15	26	841	25	838	0.0	830
Msa0222570	MtrunA17_Chr2g0318301	72.093	43	12	0	878	920	610	652	3.11e-13	74.3
Msa0222570	MtrunA17_Chr8g0352381	52.387	775	340	15	28	789	59	817	0.0	777
Msa0222570	MtrunA17_Chr8g0352381	38.095	105	19	1	878	936	639	743	1.98e-12	71.6
Msa0222570	MtrunA17_Chr1g0202711	47.711	830	383	14	27	844	40	830	0.0	738
Msa0222570	MtrunA17_Chr1g0202711	31.250	144	47	2	878	969	612	755	2.30e-12	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222570	AT3G46290.1	65.175	827	269	9	21	844	18	828	0.0	1076
Msa0222570	AT3G46290.1	37.089	213	33	4	878	989	593	805	1.06e-24	111
Msa0222570	AT5G59700.1	63.314	845	283	13	6	844	4	827	0.0	1004
Msa0222570	AT5G59700.1	35.681	213	34	6	878	990	590	799	2.78e-21	100
Msa0222570	AT5G54380.1	52.336	856	368	18	14	841	7	850	0.0	809
Msa0222570	AT5G54380.1	74.419	43	11	0	878	920	618	660	9.65e-14	76.3
Msa0222570	AT4G39110.1	50.119	840	376	17	28	840	52	875	0.0	773
Msa0222570	AT4G39110.1	75.000	40	10	0	878	917	634	673	2.16e-11	68.6
Msa0222570	AT5G61350.1	52.281	811	339	21	26	798	26	826	0.0	763
Msa0222570	AT5G61350.1	39.048	105	18	1	878	936	639	743	4.12e-13	74.3

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Find 233 sgRNAs with CRISPR-Local

Find 518 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTAGACACTGGATC+CGG	0.579889	2_1:+71853018	Msa0222570:CDS
AAACGTTGATACCGGACTCA+AGG	0.595226	2_1:-71853291	None:intergenic
AAATCAAACCAGATTCTCTT+AGG	0.360801	2_1:+71854920	Msa0222570:CDS
AAATCAGACGTATATTCCTT+TGG	0.372137	2_1:+71854754	Msa0222570:CDS
AAATCCAAGTTCTATAAAGA+GGG	0.575320	2_1:-71853391	None:intergenic
AAATGGTGAACTTAGCAGAA+TGG	0.531613	2_1:+71854836	Msa0222570:CDS
AAATTCAGCAATCCCTTGCT+GGG	0.517967	2_1:-71854314	None:intergenic
AACAAGATTTGAAACATCAG+TGG	0.657322	2_1:-71853447	None:intergenic
AACACCAGATAGATCATCGA+CGG	0.641139	2_1:-71855178	None:intergenic
AACCAATCAAGGACACCAAA+TGG	0.499714	2_1:-71854375	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGCACAAAAACATAACAA+GGG	-	chr2_1:71852768-71852787	None:intergenic	30.0%
AGTTGCACAAAAACATAACA+AGG	-	chr2_1:71852769-71852788	None:intergenic	30.0%
GATAATTACCTTATAGACTG+TGG	+	chr2_1:71852801-71852820	Msa0222570:CDS	30.0%
GAGTTGAAAGTAACTTCTTA+TGG	-	chr2_1:71852878-71852897	None:intergenic	30.0%
ATTCTTGCAGTTTGATAAAG+AGG	-	chr2_1:71852960-71852979	None:intergenic	30.0%
ATAGAATACTCCTTCATAAC+AGG	-	chr2_1:71853152-71853171	None:intergenic	30.0%
GAAATCCAAGTTCTATAAAG+AGG	-	chr2_1:71853395-71853414	None:intergenic	30.0%
ACTGATGTTTCAAATCTTGT+TGG	+	chr2_1:71853449-71853468	Msa0222570:CDS	30.0%
AGAATCCTGATAATATGGAA+CGG	-	chr2_1:71853753-71853772	None:intergenic	30.0%
ATGGGAAGTAAATATTCCAA+TGG	+	chr2_1:71854115-71854134	Msa0222570:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	71852708	71859346	71852708	ID=Msa0222570;Name=Msa0222570
chr2_1	mRNA	71852708	71859346	71852708	ID=Msa0222570-mRNA-1;Parent=Msa0222570;Name=Msa0222570-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|0.8\|1\|1\|5\|0\|994
chr2_1	exon	71852708	71855240	71852708	ID=Msa0222570-mRNA-1:exon:20700;Parent=Msa0222570-mRNA-1
chr2_1	exon	71858505	71858601	71858505	ID=Msa0222570-mRNA-1:exon:20701;Parent=Msa0222570-mRNA-1
chr2_1	exon	71858800	71858931	71858800	ID=Msa0222570-mRNA-1:exon:20702;Parent=Msa0222570-mRNA-1
chr2_1	exon	71859042	71859101	71859042	ID=Msa0222570-mRNA-1:exon:20703;Parent=Msa0222570-mRNA-1
chr2_1	exon	71859184	71859346	71859184	ID=Msa0222570-mRNA-1:exon:20704;Parent=Msa0222570-mRNA-1
chr2_1	CDS	71852708	71855240	71852708	ID=Msa0222570-mRNA-1:cds;Parent=Msa0222570-mRNA-1
chr2_1	CDS	71858505	71858601	71858505	ID=Msa0222570-mRNA-1:cds;Parent=Msa0222570-mRNA-1
chr2_1	CDS	71858800	71858931	71858800	ID=Msa0222570-mRNA-1:cds;Parent=Msa0222570-mRNA-1
chr2_1	CDS	71859042	71859101	71859042	ID=Msa0222570-mRNA-1:cds;Parent=Msa0222570-mRNA-1
chr2_1	CDS	71859184	71859346	71859184	ID=Msa0222570-mRNA-1:cds;Parent=Msa0222570-mRNA-1

Gene Sequence

>Msa0222570

ATGATGTTGGATTGGAAAAAACATGGTTTGTTTGTCTGTGTTTTGTATATGTTGTTACCCTTGTTATGTTTTTGTGCAACTTTTGTTCCATCAGATAATTACCTTATAGACTGTGGATCAACTACAAGTACTTCAGTTGGTAACCGTAATTTCAGTTCAGATAGTTTCCATAAGAAGTTACTTTCAACTCAGCAAGAGATTCTTGCTAGTACTAGCTCAAAATCTGTTTCTGATGCTGGTGATGAATCACCTCTTTATCAAACTGCAAGAATCTTTACTGGATCTTCAAAGTACACTTTTCCAATTAACCAAAAGGGTAGACACTGGATCCGGTTTTATTTCTTTCCATTTATTTATGATAGATACAATTTGAATGCTGCAAAATTCTCTGTTGCAACACAGACTTTTGTTCTTCTTAGTGGATTTACTGCTCAGAAGAGTCCTGTTATGAAGGAGTATTCTATCAATGTTACAACAGATACTCTTGTGATTACTTTTAAACCTTCTGATGATTCTGTTGCATTTGTGAATGCAATTGAAGTTGTTTCTGTTCCGGATGAACTCATTGCTGATGAGGCTCCTACCTTGAGTCCGGTATCAACGTTTTCTGGATTGGGGTTTCAGGCTTTGGAGACTGTTTGGAGGGTTAACATGGGTGGTCCAGTTGTTACCTCTGGACAGGACCCTCTTTATAGAACTTGGATTTCGGATCAAAAGTATCTTCTACAATCGAGCCTTGCCACTGATGTTTCAAATCTTGTTGGTGTTGATTTTGAGGATGGAGGGCCAACAGAGAACATTGCCCCGCGTAGTGTTTACGGTACTGCCGCGGAGATGAACACGAACCAGAGCGGTGATGCTAATCTTAATTTCAATGTGACATGGCAGTTTGACACGGAGCCAGGATTTCAATACCTTGTTCGAACTCACTTTTGTGATATAGTCAGTAAAGGTCTCAATCAACTTTATTTCAATGTTTACATTGACTCGTTGACGGCTGCTAAGGATCTTGATCTTGCTTCTAAAAGTAGTAATGTTTTGTCCGTTCCATATTATCAGGATTCTATTACGCCTTTAGCTGACGGCAATAAACTTCGTGTAAGTATTGGCCCTTCCACTTTGAATAAGGACAACCCTAATGCTATTTTGAATGGGCTGGAGATCTTGAAAATGAACAATTCTATAGGCAGTCTAAGTGCAGATGCAGCATCTGGTGCTGGGGGTGCTACTTCTGGTTCGAGTTCTAGCAAGGTTGGTGTGATAGCTGGTGTGAGTGTTGGGGTAGTGAGTGCATTGGTCTTGGCCGGAGTTTTTTGTGTACTGTGCAGGAAAAAGAAGAGGTTGGCAAGACAAAGGCAGTCGAAGACATGGATTCCTTTATCCGTGAATGATGCAACATCCCATACAATGGGAAGTAAATATTCCAATGGCACAACAATAAGTGCTGCTTCGAACTTCGAGTACCGCGTCCCTTTTGCGGAAGTTCAGGAGGGTACAAATAATTTTGATGAGAGTTGGGTTATTGGGGTTGGTGGTTTTGGGAAAGTATACAAGGGAGAGTTAAGGGATGGTAGAAAAGTGGCGGTGAAGAGGGGGAATCCGCGGTCCCAGCAAGGGATTGCTGAATTTAGAACTGAAATTGAAATGTTGTCTCAGTTTCGTCATCGCCATTTGGTGTCCTTGATTGGTTATTGTGATGAAAATAATGAAATGATCCTGATATATGAATACATGGAGAAGGGAACACTCAAGGGTCATCTGTATGGTTTGGGACTCCCGAGCTTAAGTTGGAAGGAGAGACTTGATATATGCATTGGATCTGCCAGAGGACTTCATTACCTTCACACTGGCTATGCTAAAGCGGTTATTCATCGTGACGTGAAGTCTGCAAATATCTTACTTGATGAGAACCTAATGGCTAAAGTTGCTGATTTTGGATTGTCAAAAACCGGTCCCGAGCTCGATCAAACGCACGTGAGCACAGCTGTCAAGGGGAGTTTTGGGTACCTTGATCCAGAGTATTTCAGGAGGCAACAACTGACAGAAAAATCAGACGTATATTCCTTTGGGGTAGTTCTGTTTGAAGTTCTTTGTGCAAGGCCAGTTATAGATCCATCTCTTCCTAGGGAAATGGTGAACTTAGCAGAATGGGCAATGAAATATCAGAAAAAAGGACAGCTGGAGCAAATCATCGATACATCTCTTCAAGGGAAAATCAAACCAGATTCTCTTAGGAAGTTCGCTGAAACTGCTGAGAAATGTTTGGCTGATTATGGTGTTGACAGGCCTTCAATGGGAGATGTCTTGTGGAATTTGGAATATGCGCTTCAACTTCAAGAGGCCGTGGTTCAAGGTGATCCTGAAGAAAACAGTACAAATATGATCGGTGAACTATCTCCACAAGTCAACAATTTCAACCAGGACGCAAATGTTTCTTCTTCTGCCTCTGCCGTGCCATTCGAAGCTTCAACCGTCGATGATCTATCTGGTGTTTCTATGAGTAGGGTATTCTCACAGTTGGTGAAGTCTGAGGAAGTTCAAGAAAGTTCAAACAATTTTGATTATCGAGGGAGAATTAAGGGATGGCAGGAAAGTGGCAGTGAAGAGGGTGAATCCGCAGTCACAAGAGGAGGACTTCATTACCTTCACACCGGCAATGCTAAAGCGGTTATTCACCACGACGTGAAGTCTGCAAATATGTTACTTGACGAGAACGTAATGGCTAAAGTTGCTGATTTTGGATTGTCAAAAACCGGTCCCAAGCCTGTCATAGATCCATCGCTTCCTAGGGAAATGGTGAACTTATCATCGATACAGCACTCTATGCTCTTCAACTTTCAAGAGGCTGTTGTGCAAGGTGATCCTGAAGATAACATTACAAATATGATCGGGGAGCTCTCTAAACAGGTCAACAATTTCAACCAGGACGCAAATGTTTCTTCGTCTGATTTTGCCGTACCATTTGAAGCTTTTAAGTGTGGATGA

Protein sequence

>Msa0222570

MMLDWKKHGLFVCVLYMLLPLLCFCATFVPSDNYLIDCGSTTSTSVGNRNFSSDSFHKKLLSTQQEILASTSSKSVSDAGDESPLYQTARIFTGSSKYTFPINQKGRHWIRFYFFPFIYDRYNLNAAKFSVATQTFVLLSGFTAQKSPVMKEYSINVTTDTLVITFKPSDDSVAFVNAIEVVSVPDELIADEAPTLSPVSTFSGLGFQALETVWRVNMGGPVVTSGQDPLYRTWISDQKYLLQSSLATDVSNLVGVDFEDGGPTENIAPRSVYGTAAEMNTNQSGDANLNFNVTWQFDTEPGFQYLVRTHFCDIVSKGLNQLYFNVYIDSLTAAKDLDLASKSSNVLSVPYYQDSITPLADGNKLRVSIGPSTLNKDNPNAILNGLEILKMNNSIGSLSADAASGAGGATSGSSSSKVGVIAGVSVGVVSALVLAGVFCVLCRKKKRLARQRQSKTWIPLSVNDATSHTMGSKYSNGTTISAASNFEYRVPFAEVQEGTNNFDESWVIGVGGFGKVYKGELRDGRKVAVKRGNPRSQQGIAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMEKGTLKGHLYGLGLPSLSWKERLDICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLPREMVNLAEWAMKYQKKGQLEQIIDTSLQGKIKPDSLRKFAETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFNQDANVSSSASAVPFEASTVDDLSGVSMSRVFSQLVKSEEVQESSNNFDYRGRIKGWQESGSEEGESAVTRGGLHYLHTGNAKAVIHHDVKSANMLLDENVMAKVADFGLSKTGPKPVIDPSLPREMVNLSSIQHSMLFNFQEAVVQGDPEDNITNMIGELSKQVNNFNQDANVSSSDFAVPFEAFKCG*