AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0222640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0222640 MtrunA17_Chr2g0327631 90.827 774 52 1 1 755 1 774 0.0 1392
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0222640 AT5G59980.1 54.942 344 128 5 1 317 1 344 2.96e-121 376
Msa0222640 AT5G59980.4 54.942 344 128 5 1 317 1 344 9.13e-121 378
Msa0222640 AT5G59980.3 54.942 344 128 5 1 317 1 344 1.01e-120 378
Msa0222640 AT5G59980.2 54.942 344 128 5 1 317 1 344 1.96e-120 378

Find 150 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCAACTGCATCAGTTTC+TGG 0.127926 2_1:-71926487 None:intergenic
ACATCTGAATCGTTGAAATT+TGG 0.153936 2_1:-71926109 None:intergenic
AAATTAACTGCCTCCTTAAT+TGG 0.169103 2_1:-71923569 None:intergenic
TGCAGTCTTTGATGCTTTAC+AGG 0.185897 2_1:-71925372 None:intergenic
AAATAACCCATCGAGCTTTC+AGG 0.193219 2_1:-71927122 None:intergenic
TTTCAGCTAAGTTGCCATTT+AGG 0.209661 2_1:+71923376 Msa0222640:CDS
CTCTATCTTCTCAATTAATA+AGG 0.277921 2_1:+71925481 Msa0222640:CDS
ATAGATTGCTTCAACCTAAA+TGG 0.280505 2_1:-71923390 None:intergenic
GAAGCAATCTATGGTTAAAA+TGG 0.299672 2_1:+71923401 Msa0222640:CDS
TTGTTGACGGCGGTGGAATC+AGG 0.302526 2_1:-71921819 None:intergenic
GCTGTTAAAGCAATGGAATT+AGG 0.306716 2_1:+71921928 Msa0222640:CDS
TGATATCCTGTTGGATGATA+TGG 0.316857 2_1:+71925331 Msa0222640:CDS
TCGGGAGCTTCTTGGAGTTT+CGG 0.325845 2_1:+71922083 Msa0222640:CDS
AAGCTTCATCGGGAGCTTCT+TGG 0.334361 2_1:+71922075 Msa0222640:CDS
ATTTAGGTTGAAGCAATCTA+TGG 0.341392 2_1:+71923392 Msa0222640:CDS
ATCCAGGTCGATTGCGAGTT+AGG 0.341616 2_1:+71926911 Msa0222640:intron
TTATTGCTGATGTCCAATTA+AGG 0.343178 2_1:+71923556 Msa0222640:CDS
GGCTGCTCAGTTAAGTTGTT+GGG 0.354319 2_1:-71925551 None:intergenic
CTGACAAATGCCACAAAGTT+AGG 0.354766 2_1:+71926082 Msa0222640:CDS
TTATCTTCCACCATAACTTC+TGG 0.356790 2_1:-71926586 None:intergenic
ATCTCAAGGTTATAAATTCC+AGG 0.359075 2_1:+71925433 Msa0222640:CDS
ACAGTGGACAGTTATATTAA+TGG 0.363051 2_1:+71925836 Msa0222640:CDS
GGTTTGCCGCTTGCGCCACC+AGG 0.365286 2_1:-71921798 None:intergenic
TTGTGTTGAGAATGCTTTGC+AGG 0.370864 2_1:+71922143 Msa0222640:CDS
CGCTTCAATGGAAAGAAAAC+TGG 0.371087 2_1:-71926943 None:intergenic
TTGGATGATATGGAAAATTC+TGG 0.374387 2_1:+71925341 Msa0222640:CDS
GACTGCTTGGTTAAGTTGTT+AGG 0.375394 2_1:-71925905 None:intergenic
TGAGGATCAACTGAAGATTT+AGG 0.375525 2_1:-71926235 None:intergenic
CGTCGTCGGCGAAGCTTCAT+CGG 0.385082 2_1:+71922064 Msa0222640:CDS
GCCTCTGTTCAGTCTGTCTC+AGG 0.385373 2_1:+71926646 Msa0222640:CDS
CTTTAACAGCGAGGCGCGTT+CGG 0.386004 2_1:-71921915 None:intergenic
TGTGTGTGTTTCCCTAAGTT+TGG 0.386038 2_1:-71927148 None:intergenic
AGGAGAGAAGAGAGAGAAAG+TGG 0.387074 2_1:-71922021 None:intergenic
ACATTCATTTCCAGAAGTTA+TGG 0.390451 2_1:+71926576 Msa0222640:CDS
ATAGAGAGAGTGTCATTTGC+AGG 0.391299 2_1:-71925464 None:intergenic
TCATTTCATCAAAAGGTGTT+TGG 0.391879 2_1:-71926525 None:intergenic
ATTGAAGCGGTTGTTTCATA+TGG 0.392099 2_1:+71926957 Msa0222640:CDS
CCTTCGGTGAATGAACTTAG+AGG 0.398720 2_1:+71924767 Msa0222640:CDS
AAATCATAAGTCTTCAAAAT+CGG 0.418135 2_1:-71922189 None:intergenic
ATATGAAACAACCGCTTCAA+TGG 0.418609 2_1:-71926955 None:intergenic
TCATCAAAAGGTGTTTGGTC+AGG 0.422171 2_1:-71926520 None:intergenic
GATGATCTATCGTCTTGCTT+TGG 0.422900 2_1:-71925593 None:intergenic
GGGTTATTTAGTCCAAACTT+AGG 0.428181 2_1:+71927136 Msa0222640:three_prime_UTR
TCAGTTAAGTTGTTGGGTAC+AGG 0.428275 2_1:-71925545 None:intergenic
AGATGTTGATTGCACCCAAT+TGG 0.429278 2_1:+71926126 Msa0222640:CDS
GGGAAACACACACAAACAAT+TGG 0.429734 2_1:+71927157 Msa0222640:three_prime_UTR
GTGAAGGGTAAGGTATGTTT+AGG 0.429828 2_1:-71921855 None:intergenic
AATAACCCATCGAGCTTTCA+GGG 0.434182 2_1:-71927121 None:intergenic
TTTCGGCTTCTACTCCGTTT+CGG 0.434992 2_1:+71922100 Msa0222640:CDS
ATTTGGAAGTCCTAACTTTG+TGG 0.442083 2_1:-71926092 None:intergenic
ACTTAACTGAGCAGCCCAAC+AGG 0.442105 2_1:+71925558 Msa0222640:CDS
CAGGCGAATGCTTTGAATGC+GGG 0.445851 2_1:+71922162 Msa0222640:CDS
GCAAGACGATAGATCATCAT+TGG 0.446477 2_1:+71925598 Msa0222640:CDS
GGATGGTTGTAGCAGAATAG+TGG 0.446988 2_1:+71927178 Msa0222640:three_prime_UTR
GGGCTGCTCAGTTAAGTTGT+TGG 0.447613 2_1:-71925552 None:intergenic
GATTGAGCAACGATGGTTAT+CGG 0.451011 2_1:-71921995 None:intergenic
GACCCTCTCTCCAGTGGGGA+AGG 0.454890 2_1:+71925308 Msa0222640:CDS
GGTTATTTAGTCCAAACTTA+GGG 0.459756 2_1:+71927137 Msa0222640:three_prime_UTR
GCAGCTATTTACCTTGGCAT+TGG 0.460339 2_1:-71923592 None:intergenic
TGAGACAAATGGTGCGAAGT+TGG 0.464101 2_1:+71925721 Msa0222640:CDS
CGTTCCGTTTCTTGCGTCGT+CGG 0.466825 2_1:+71922050 Msa0222640:CDS
CACCAGGGTTTAAGAGTTGA+GGG 0.467896 2_1:-71921782 None:intergenic
ATTCCACCGCCGTCAACAAT+GGG 0.469067 2_1:+71921823 Msa0222640:exon
ATCCTCGTGTACTGCCGAAA+CGG 0.470448 2_1:-71922114 None:intergenic
ACATGTAGCTGTTGATTGAC+TGG 0.472181 2_1:+71924708 Msa0222640:intron
GGACAAACATCAGTCCTGTT+GGG 0.475053 2_1:-71925572 None:intergenic
AAACCCATTGTTGACGGCGG+TGG 0.476178 2_1:-71921826 None:intergenic
TCGCTTTCTCCTTAGAGCAT+TGG 0.480554 2_1:-71925210 None:intergenic
CATTTGCAGGTAAGAAATCC+TGG 0.480981 2_1:-71925451 None:intergenic
TGCTTTGCATGTTCTGTAGC+CGG 0.485108 2_1:-71926310 None:intergenic
GCTTTCAGGGTTGAAGAAAC+CGG 0.489321 2_1:-71927108 None:intergenic
GATTCCACCGCCGTCAACAA+TGG 0.491980 2_1:+71921822 Msa0222640:exon
TGGACAAACATCAGTCCTGT+TGG 0.492256 2_1:-71925573 None:intergenic
CTTCAACCCTGAAAGCTCGA+TGG 0.494696 2_1:+71927115 Msa0222640:three_prime_UTR
GTGGAGCCTGTCGGACTGCT+TGG 0.497665 2_1:-71925918 None:intergenic
TTTGTGGTGGGTGAAGGGTA+AGG 0.499647 2_1:-71921865 None:intergenic
GGAGAGAAGAGAGAGAAAGT+GGG 0.501936 2_1:-71922020 None:intergenic
ATTCTATTGATTCAGATGTC+CGG 0.503522 2_1:+71925753 Msa0222640:CDS
TGATGTTGCTTGTGAGAGAA+TGG 0.507181 2_1:+71922245 Msa0222640:CDS
TTGTACTGAAACAAAGTCAA+TGG 0.507684 2_1:-71925399 None:intergenic
CCACCAGGGTTTAAGAGTTG+AGG 0.514268 2_1:-71921783 None:intergenic
TTCAACCCTGAAAGCTCGAT+GGG 0.515368 2_1:+71927116 Msa0222640:three_prime_UTR
GAGATAGACACTGAGACAAA+TGG 0.516634 2_1:+71925710 Msa0222640:CDS
TTCGCCGACGACGCAAGAAA+CGG 0.517581 2_1:-71922054 None:intergenic
GAGAGAAGAGAGAGAAAGTG+GGG 0.522755 2_1:-71922019 None:intergenic
GTCGTCGGCGAAGCTTCATC+GGG 0.524279 2_1:+71922065 Msa0222640:CDS
CTTAGAGGGCCGTGTGATGT+TGG 0.524883 2_1:+71924782 Msa0222640:CDS
CAGGATATCACCTTCCCCAC+TGG 0.532237 2_1:-71925318 None:intergenic
ATTCTCAAGAGTTGCTAAAG+TGG 0.536803 2_1:+71925285 Msa0222640:CDS
CTCCGTTTCGGCAGTACACG+AGG 0.540787 2_1:+71922112 Msa0222640:CDS
GCTTACAACCGCACGATGAA+AGG 0.545367 2_1:+71921964 Msa0222640:CDS
CATCTTGCGCAAGAGAAATG+TGG 0.546884 2_1:-71925937 None:intergenic
CACCTTCCCCACTGGAGAGA+GGG 0.549180 2_1:-71925310 None:intergenic
TGGAATTTATAACCTTGAGA+TGG 0.549686 2_1:-71925431 None:intergenic
TTTCTCTTGCGCAAGATGAA+AGG 0.550064 2_1:+71925942 Msa0222640:CDS
CAAAGCATTCTCAACACAAA+CGG 0.551812 2_1:-71922139 None:intergenic
TCGAAGAAACCCATTGTTGA+CGG 0.554637 2_1:-71921832 None:intergenic
AACCCTCAACTCTTAAACCC+TGG 0.555631 2_1:+71921780 Msa0222640:five_prime_UTR
TATGGTTAAAATGGCTACCC+AGG 0.555823 2_1:+71923410 Msa0222640:CDS
ACTTTCTCATTAATATTGTG+AGG 0.558920 2_1:-71926253 None:intergenic
CAAGAAACGGAACGACATTG+AGG 0.560522 2_1:-71922041 None:intergenic
ACTTAACCAAGCAGTCCGAC+AGG 0.568640 2_1:+71925912 Msa0222640:CDS
AACACACACAAACAATTGGA+TGG 0.571465 2_1:+71927161 Msa0222640:three_prime_UTR
TTCTCAAGAGTTGCTAAAGT+GGG 0.573177 2_1:+71925286 Msa0222640:CDS
ATTTATAACCTTGAGATGGA+AGG 0.574614 2_1:-71925427 None:intergenic
GCAGTTAATTTCCAATGCCA+AGG 0.577663 2_1:+71923581 Msa0222640:CDS
CTGTTGATTGACTGGACTCG+TGG 0.578599 2_1:+71924716 Msa0222640:CDS
GTGCATCTCAAGTAATGTGT+TGG 0.580319 2_1:+71926180 Msa0222640:CDS
GCGCCTCGCTGTTAAAGCAA+TGG 0.581964 2_1:+71921921 Msa0222640:CDS
TTCATTTCCAGAAGTTATGG+TGG 0.582059 2_1:+71926579 Msa0222640:CDS
AGTCTTTGATGCTTTACAGG+AGG 0.583066 2_1:-71925369 None:intergenic
GTTTGCCGCTTGCGCCACCA+GGG 0.583866 2_1:-71921797 None:intergenic
GAAATTTCTACACCATCCAT+AGG 0.588034 2_1:+71926277 Msa0222640:CDS
GACGATAGATCATCATTGGA+TGG 0.590101 2_1:+71925602 Msa0222640:CDS
TTAAACCCTGGTGGCGCAAG+CGG 0.590775 2_1:+71921792 Msa0222640:five_prime_UTR
GAGAAAGCGATTTCATAAAG+AGG 0.596412 2_1:+71925223 Msa0222640:CDS
AAGTGGGACCCTCTCTCCAG+TGG 0.596526 2_1:+71925302 Msa0222640:CDS
AGTGGGACCCTCTCTCCAGT+GGG 0.598483 2_1:+71925303 Msa0222640:CDS
AACAAATTTCCAACATCACA+CGG 0.601223 2_1:-71924791 None:intergenic
GCAATGGAATTAGGTTACAC+AGG 0.603237 2_1:+71921937 Msa0222640:CDS
AAACATCACATTGTGAGATG+TGG 0.603238 2_1:+71925632 Msa0222640:CDS
TACTTCTGTAACATCAGTGG+AGG 0.603425 2_1:+71926447 Msa0222640:CDS
AGGCGAATGCTTTGAATGCG+GGG 0.604599 2_1:+71922163 Msa0222640:CDS
AAAAGAAAATCAGTCAACAC+TGG 0.607104 2_1:+71925880 Msa0222640:CDS
CCTCTAAGTTCATTCACCGA+AGG 0.609236 2_1:-71924767 None:intergenic
TCACCTTCCCCACTGGAGAG+AGG 0.612417 2_1:-71925311 None:intergenic
ATCTACTTCTGTAACATCAG+TGG 0.614608 2_1:+71926444 Msa0222640:CDS
TGCAAGTAACAATAATAACC+TGG 0.617391 2_1:-71927042 None:intergenic
TCTGTAACATCAGTGGAGGA+TGG 0.618825 2_1:+71926451 Msa0222640:CDS
CAAGACAGCCTTCCATCTCA+AGG 0.620080 2_1:+71925419 Msa0222640:CDS
AAGAGAAATGTGGAGCCTGT+CGG 0.622702 2_1:-71925927 None:intergenic
GCAGGCGAATGCTTTGAATG+CGG 0.627701 2_1:+71922161 Msa0222640:CDS
TGGGGAAGGTGATATCCTGT+TGG 0.627773 2_1:+71925322 Msa0222640:CDS
TCAAACGCATTCTGATTCAA+CGG 0.628223 2_1:-71922225 None:intergenic
TTGCTGATGTCCAATTAAGG+AGG 0.628253 2_1:+71923559 Msa0222640:CDS
TATTGATTCAGATGTCCGGA+TGG 0.633396 2_1:+71925757 Msa0222640:CDS
CTTCGGTGAATGAACTTAGA+GGG 0.633683 2_1:+71924768 Msa0222640:CDS
GATGGTTGTAGCAGAATAGT+GGG 0.636934 2_1:+71927179 Msa0222640:three_prime_UTR
GATGCATGAAAATTTGCCAA+AGG 0.640671 2_1:+71926378 Msa0222640:CDS
GTGGGGAGATTGAGCAACGA+TGG 0.642528 2_1:-71922002 None:intergenic
TAAAATTGCTGAGCATACAG+TGG 0.659450 2_1:+71926408 Msa0222640:CDS
AATTGCTGAGCATACAGTGG+TGG 0.659637 2_1:+71926411 Msa0222640:CDS
ACATTACGCCTTTCATCGTG+CGG 0.660759 2_1:-71921972 None:intergenic
ATTCCATTGCTTTAACAGCG+AGG 0.663497 2_1:-71921924 None:intergenic
CCTCAACTCTTAAACCCTGG+TGG 0.693987 2_1:+71921783 Msa0222640:five_prime_UTR
ATTAATATAACTGTCCACTG+TGG 0.719711 2_1:-71925834 None:intergenic
AAGAAACCCATTGTTGACGG+CGG 0.725801 2_1:-71921829 None:intergenic
ACCTGAGACAGACTGAACAG+AGG 0.728353 2_1:-71926647 None:intergenic
GTGGGACCCTCTCTCCAGTG+GGG 0.732838 2_1:+71925304 Msa0222640:CDS
TGTTGCTTGTGAGAGAATGG+CGG 0.750377 2_1:+71922248 Msa0222640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTTTTTTTTTTTGA+AGG + chr2_1:71923245-71923264 Msa0222640:intron 10.0%
!!! TTTTTGTTTTTAATAAATTG+AGG + chr2_1:71923735-71923754 Msa0222640:intron 10.0%
!! AGAAAAATGTATAAATAAAA+GGG - chr2_1:71925057-71925076 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+AGG - chr2_1:71925058-71925077 None:intergenic 10.0%
!!! TTTTGTTAAGATTATTTTCA+TGG + chr2_1:71922412-71922431 Msa0222640:intron 15.0%
!!! AATAATCAAAAGATTGATTT+TGG - chr2_1:71923317-71923336 None:intergenic 15.0%
!! TGTGATTGTAAATTTATATA+GGG - chr2_1:71923620-71923639 None:intergenic 15.0%
!! ATGTGATTGTAAATTTATAT+AGG - chr2_1:71923621-71923640 None:intergenic 15.0%
!! TATATAAATTTACAATCACA+TGG + chr2_1:71923620-71923639 Msa0222640:intron 15.0%
!! TTATTTAGTCATCATTTATT+TGG + chr2_1:71924332-71924351 Msa0222640:intron 15.0%
!!! AAATTTAAACAGATATTTTG+TGG - chr2_1:71924509-71924528 None:intergenic 15.0%
!!! GAAATTTGTTGTTATTATTT+GGG + chr2_1:71924804-71924823 Msa0222640:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr2_1:71924994-71925013 None:intergenic 15.0%
!! AAATCATAAGTCTTCAAAAT+CGG - chr2_1:71922192-71922211 None:intergenic 20.0%
!!! GAAAAAACATTTGAGATTTT+TGG + chr2_1:71922306-71922325 Msa0222640:intron 20.0%
!! TCTTAAAAAGTTAAAATGTG+TGG + chr2_1:71922359-71922378 Msa0222640:intron 20.0%
!!! TAGATGTTTGATAACTATAT+TGG + chr2_1:71922440-71922459 Msa0222640:intron 20.0%
!!! TTATTGATTATTATTGTTGC+AGG + chr2_1:71923332-71923351 Msa0222640:intron 20.0%
!!! CTTTTTCTATTTCAAAGAAA+GGG - chr2_1:71923466-71923485 None:intergenic 20.0%
!! AGGAACTAAATATTAACATT+TGG + chr2_1:71923484-71923503 Msa0222640:intron 20.0%
!! TAAAAAAAAATGTGAATGAG+AGG + chr2_1:71923810-71923829 Msa0222640:intron 20.0%
!!! GGAAATTTGTTGTTATTATT+TGG + chr2_1:71924803-71924822 Msa0222640:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr2_1:71924924-71924943 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr2_1:71925034-71925053 None:intergenic 20.0%
!! TTTGAGAAAAATACACATAA+TGG + chr2_1:71926019-71926038 Msa0222640:CDS 20.0%
!! CACTAATAAATATCTTTATC+TGG + chr2_1:71926681-71926700 Msa0222640:intron 20.0%
!!! TTTTTACCTTTCTTCTTAAA+AGG - chr2_1:71926985-71927004 None:intergenic 20.0%
!! GGAATAAAAACTAATTACTT+TGG - chr2_1:71927024-71927043 None:intergenic 20.0%
!!! AAGTAATTAGTTTTTATTCC+AGG + chr2_1:71927024-71927043 Msa0222640:exon 20.0%
!!! GATTTTGAAGACTTATGATT+TGG + chr2_1:71922191-71922210 Msa0222640:CDS 25.0%
!!! ATCTCAAATGTTTTTTCTTC+AGG - chr2_1:71922303-71922322 None:intergenic 25.0%
! GCAAATAGATCAATTCAAAT+CGG - chr2_1:71922475-71922494 None:intergenic 25.0%
! TAATGAGTTAGATTGAAATG+TGG + chr2_1:71922596-71922615 Msa0222640:intron 25.0%
!! GTTTTTATAACAGTCTCATT+GGG - chr2_1:71922715-71922734 None:intergenic 25.0%
!! AGTTTTTATAACAGTCTCAT+TGG - chr2_1:71922716-71922735 None:intergenic 25.0%
!! TTGATTTTTGTAAGCTCTTT+AGG + chr2_1:71922779-71922798 Msa0222640:intron 25.0%
!!! TAGATTTTGGAGATGTATAT+TGG + chr2_1:71922976-71922995 Msa0222640:intron 25.0%
! ACCACTTATTTATTCAAACA+CGG + chr2_1:71923206-71923225 Msa0222640:intron 25.0%
! AAAAACACGAAGAACTATTT+AGG - chr2_1:71923232-71923251 None:intergenic 25.0%
!! CCTTTTTCTATTTCAAAGAA+AGG - chr2_1:71923467-71923486 None:intergenic 25.0%
!!! CCTTTCTTTGAAATAGAAAA+AGG + chr2_1:71923464-71923483 Msa0222640:intron 25.0%
! TACGTAATATAAATGTGTAC+TGG - chr2_1:71923982-71924001 None:intergenic 25.0%
! AATTGACTGTGTATACTTTA+TGG + chr2_1:71924121-71924140 Msa0222640:intron 25.0%
! AAAATCTGTATATGCTTGAT+AGG - chr2_1:71924249-71924268 None:intergenic 25.0%
! CAAAATCATAGATCTTATGA+GGG - chr2_1:71924625-71924644 None:intergenic 25.0%
! TCAAAATCATAGATCTTATG+AGG - chr2_1:71924626-71924645 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr2_1:71924925-71924944 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG - chr2_1:71924946-71924965 None:intergenic 25.0%
!! TTGAAATGACTCAGTTATTT+TGG - chr2_1:71924947-71924966 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr2_1:71925035-71925054 None:intergenic 25.0%
! TGTATAAATAAAAGGGAAAG+TGG - chr2_1:71925050-71925069 None:intergenic 25.0%
! CTCTATCTTCTCAATTAATA+AGG + chr2_1:71925481-71925500 Msa0222640:CDS 25.0%
!!! TGTTGACTGATTTACATTTT+CGG - chr2_1:71925525-71925544 None:intergenic 25.0%
!!! TGATTTTCTTTTTCAGAAAC+AGG - chr2_1:71925872-71925891 None:intergenic 25.0%
! ACTTTCTCATTAATATTGTG+AGG - chr2_1:71926256-71926275 None:intergenic 25.0%
!!! GCAATTTTAAAATCTTCCTT+TGG - chr2_1:71926397-71926416 None:intergenic 25.0%
!! ACCTTTTGATGAAATGAAAA+CGG + chr2_1:71926531-71926550 Msa0222640:CDS 25.0%
! TTGAAACTATTCAAACTACA+TGG - chr2_1:71926753-71926772 None:intergenic 25.0%
! TTATGTCACAACACTTAAAA+TGG - chr2_1:71926866-71926885 None:intergenic 25.0%
!!! TGTCTATCGATTTTTTATAC+CGG + chr2_1:71927089-71927108 Msa0222640:three_prime_UTR 25.0%
ATTTGATTCATGTAGATGAC+TGG + chr2_1:71922643-71922662 Msa0222640:intron 30.0%
! TTGTTGTTGAACTTATGTAC+TGG + chr2_1:71922683-71922702 Msa0222640:intron 30.0%
AATCAACTGAAAAAAGCTCA+CGG - chr2_1:71922765-71922784 None:intergenic 30.0%
ACAACTTAATTGAGAGCTTA+TGG - chr2_1:71922912-71922931 None:intergenic 30.0%
ACAGCTTATGATATGTCAAT+AGG + chr2_1:71923087-71923106 Msa0222640:intron 30.0%
ATAGATTGCTTCAACCTAAA+TGG - chr2_1:71923393-71923412 None:intergenic 30.0%
!! ATTTAGGTTGAAGCAATCTA+TGG + chr2_1:71923392-71923411 Msa0222640:CDS 30.0%
GAAGCAATCTATGGTTAAAA+TGG + chr2_1:71923401-71923420 Msa0222640:CDS 30.0%
TTATTGCTGATGTCCAATTA+AGG + chr2_1:71923556-71923575 Msa0222640:CDS 30.0%
AAATTAACTGCCTCCTTAAT+TGG - chr2_1:71923572-71923591 None:intergenic 30.0%
!! TGTCTTATTTGTGCAGTTAT+GGG - chr2_1:71923877-71923896 None:intergenic 30.0%
!! TTGTCTTATTTGTGCAGTTA+TGG - chr2_1:71923878-71923897 None:intergenic 30.0%
CACAAATAAGACAAGTTTCA+TGG + chr2_1:71923884-71923903 Msa0222640:intron 30.0%
!! ACTGGTTATTGAAGTTTTGA+GGG + chr2_1:71924046-71924065 Msa0222640:intron 30.0%
GTGTTCTTAACAACTAAGAA+AGG + chr2_1:71924085-71924104 Msa0222640:intron 30.0%
TCTTAACAACTAAGAAAGGT+TGG + chr2_1:71924089-71924108 Msa0222640:intron 30.0%
CTTAACAACTAAGAAAGGTT+GGG + chr2_1:71924090-71924109 Msa0222640:intron 30.0%
TTAACAACTAAGAAAGGTTG+GGG + chr2_1:71924091-71924110 Msa0222640:intron 30.0%
GAATCGTGCAATATTAAGAA+TGG + chr2_1:71924222-71924241 Msa0222640:intron 30.0%
AACAAATTTCCAACATCACA+CGG - chr2_1:71924794-71924813 None:intergenic 30.0%
!! CAGCTATTTCTAAAAACTGT+AGG + chr2_1:71924849-71924868 Msa0222640:intron 30.0%
ACTCAAGATATGTTAAACAC+TGG - chr2_1:71925158-71925177 None:intergenic 30.0%
! AATTTTCCATATCATCCAAC+AGG - chr2_1:71925340-71925359 None:intergenic 30.0%
TTGGATGATATGGAAAATTC+TGG + chr2_1:71925341-71925360 Msa0222640:CDS 30.0%
TTGTACTGAAACAAAGTCAA+TGG - chr2_1:71925402-71925421 None:intergenic 30.0%
ATTTATAACCTTGAGATGGA+AGG - chr2_1:71925430-71925449 None:intergenic 30.0%
TGGAATTTATAACCTTGAGA+TGG - chr2_1:71925434-71925453 None:intergenic 30.0%
ATCTCAAGGTTATAAATTCC+AGG + chr2_1:71925433-71925452 Msa0222640:CDS 30.0%
!! ATTCTATTGATTCAGATGTC+CGG + chr2_1:71925753-71925772 Msa0222640:CDS 30.0%
! AATTTTTGATGCTTCACAAG+AGG - chr2_1:71925807-71925826 None:intergenic 30.0%
ATTAATATAACTGTCCACTG+TGG - chr2_1:71925837-71925856 None:intergenic 30.0%
ACAGTGGACAGTTATATTAA+TGG + chr2_1:71925836-71925855 Msa0222640:CDS 30.0%
AAAAGAAAATCAGTCAACAC+TGG + chr2_1:71925880-71925899 Msa0222640:CDS 30.0%
ACATCTGAATCGTTGAAATT+TGG - chr2_1:71926112-71926131 None:intergenic 30.0%
! AAGTGATTTTGCATCCAATT+GGG - chr2_1:71926143-71926162 None:intergenic 30.0%
!! TCATTTCATCAAAAGGTGTT+TGG - chr2_1:71926528-71926547 None:intergenic 30.0%
! TCCGTTTTCATTTCATCAAA+AGG - chr2_1:71926535-71926554 None:intergenic 30.0%
ACATTCATTTCCAGAAGTTA+TGG + chr2_1:71926576-71926595 Msa0222640:CDS 30.0%
! ATGGTGGAAGATAAAAAGTT+TGG + chr2_1:71926595-71926614 Msa0222640:CDS 30.0%
CTTCCATCACAAGTAAATAA+CGG + chr2_1:71926776-71926795 Msa0222640:intron 30.0%
TATCCGTTATTTACTTGTGA+TGG - chr2_1:71926782-71926801 None:intergenic 30.0%
TGCAAGTAACAATAATAACC+TGG - chr2_1:71927045-71927064 None:intergenic 30.0%
GGTTATTTAGTCCAAACTTA+GGG + chr2_1:71927137-71927156 Msa0222640:three_prime_UTR 30.0%
!! GATTTAGAAGGTTTTGTGGT+GGG - chr2_1:71921880-71921899 None:intergenic 35.0%
!!! TTTTCGATGGTGGATTTAGA+AGG - chr2_1:71921892-71921911 None:intergenic 35.0%
GCTGTTAAAGCAATGGAATT+AGG + chr2_1:71921928-71921947 Msa0222640:CDS 35.0%
! CAAAGCATTCTCAACACAAA+CGG - chr2_1:71922142-71922161 None:intergenic 35.0%
TCAAACGCATTCTGATTCAA+CGG - chr2_1:71922228-71922247 None:intergenic 35.0%
TTCTTCAGGATCAATCAGTA+AGG - chr2_1:71922289-71922308 None:intergenic 35.0%
TAAGGAGAGTAGATCAATGT+AGG + chr2_1:71922522-71922541 Msa0222640:intron 35.0%
TTCATGTAGATGACTGGATA+AGG + chr2_1:71922649-71922668 Msa0222640:intron 35.0%
TATGAGTTATGACATCGACA+TGG + chr2_1:71922739-71922758 Msa0222640:intron 35.0%
TAAATGCCCATACGAAAACA+CGG - chr2_1:71922958-71922977 None:intergenic 35.0%
! TCGTATGGGCATTTAGATTT+TGG + chr2_1:71922963-71922982 Msa0222640:intron 35.0%
GCCGTGTTTGAATAAATAAG+TGG - chr2_1:71923210-71923229 None:intergenic 35.0%
! TTTCAGCTAAGTTGCCATTT+AGG + chr2_1:71923376-71923395 Msa0222640:CDS 35.0%
!!! GTTTTTGAGGTTTCATACTC+TGG + chr2_1:71923531-71923550 Msa0222640:CDS 35.0%
CAGTTATGGGGTCAATATAT+GGG - chr2_1:71923864-71923883 None:intergenic 35.0%
!! GTCTTATTTGTGCAGTTATG+GGG - chr2_1:71923876-71923895 None:intergenic 35.0%
ATAAGACAAGTTTCATGGAC+AGG + chr2_1:71923889-71923908 Msa0222640:intron 35.0%
GTATCTTTATTAATGCGAGC+TGG + chr2_1:71923999-71924018 Msa0222640:intron 35.0%
TATATGTCTTGAAGTCTGAC+TGG + chr2_1:71924028-71924047 Msa0222640:intron 35.0%
!! GACTGGTTATTGAAGTTTTG+AGG + chr2_1:71924045-71924064 Msa0222640:intron 35.0%
TAACAACTAAGAAAGGTTGG+GGG + chr2_1:71924092-71924111 Msa0222640:intron 35.0%
AACTTATTCAAACCAGTGCT+TGG + chr2_1:71924296-71924315 Msa0222640:intron 35.0%
GAAATTGAAATCCAGGAACA+GGG - chr2_1:71924561-71924580 None:intergenic 35.0%
CTAACAGGAAATTGAAATCC+AGG - chr2_1:71924568-71924587 None:intergenic 35.0%
TTTCAATTTCCTGTTAGAGC+AGG + chr2_1:71924571-71924590 Msa0222640:intron 35.0%
GACAACCTTGTATGTAGTTA+CGG + chr2_1:71924644-71924663 Msa0222640:intron 35.0%
TGTAACCGTAACTACATACA+AGG - chr2_1:71924652-71924671 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG - chr2_1:71924911-71924930 None:intergenic 35.0%
ATCTTGAGTGACATTCTGAA+TGG + chr2_1:71925169-71925188 Msa0222640:intron 35.0%
! TTCTTTTAGCCAATGCTCTA+AGG + chr2_1:71925201-71925220 Msa0222640:CDS 35.0%
GAGAAAGCGATTTCATAAAG+AGG + chr2_1:71925223-71925242 Msa0222640:CDS 35.0%
ATTCTCAAGAGTTGCTAAAG+TGG + chr2_1:71925285-71925304 Msa0222640:CDS 35.0%
TTCTCAAGAGTTGCTAAAGT+GGG + chr2_1:71925286-71925305 Msa0222640:CDS 35.0%
TGATATCCTGTTGGATGATA+TGG + chr2_1:71925331-71925350 Msa0222640:CDS 35.0%
! TGATTTACATTTTCGGCAAC+AGG - chr2_1:71925518-71925537 None:intergenic 35.0%
AAACATCACATTGTGAGATG+TGG + chr2_1:71925632-71925651 Msa0222640:CDS 35.0%
ATTTGGAAGTCCTAACTTTG+TGG - chr2_1:71926095-71926114 None:intergenic 35.0%
! CAAGTGATTTTGCATCCAAT+TGG - chr2_1:71926144-71926163 None:intergenic 35.0%
TGAGGATCAACTGAAGATTT+AGG - chr2_1:71926238-71926257 None:intergenic 35.0%
GAAATTTCTACACCATCCAT+AGG + chr2_1:71926277-71926296 Msa0222640:CDS 35.0%
GATGCATGAAAATTTGCCAA+AGG + chr2_1:71926378-71926397 Msa0222640:CDS 35.0%
TAAAATTGCTGAGCATACAG+TGG + chr2_1:71926408-71926427 Msa0222640:CDS 35.0%
ATCTACTTCTGTAACATCAG+TGG + chr2_1:71926444-71926463 Msa0222640:CDS 35.0%
TTCATTTCCAGAAGTTATGG+TGG + chr2_1:71926579-71926598 Msa0222640:CDS 35.0%
TTATCTTCCACCATAACTTC+TGG - chr2_1:71926589-71926608 None:intergenic 35.0%
! CGTTATTTACTTGTGATGGA+AGG - chr2_1:71926778-71926797 None:intergenic 35.0%
TGTGCATTTGCATTATATCC+AGG + chr2_1:71926895-71926914 Msa0222640:intron 35.0%
! CAGTTTTCTTTCCATTGAAG+CGG + chr2_1:71926944-71926963 Msa0222640:CDS 35.0%
ATATGAAACAACCGCTTCAA+TGG - chr2_1:71926958-71926977 None:intergenic 35.0%
! ATTGAAGCGGTTGTTTCATA+TGG + chr2_1:71926957-71926976 Msa0222640:CDS 35.0%
!! ATGGTGCCTTTTAAGAAGAA+AGG + chr2_1:71926976-71926995 Msa0222640:CDS 35.0%
GGGTTATTTAGTCCAAACTT+AGG + chr2_1:71927136-71927155 Msa0222640:three_prime_UTR 35.0%
AACACACACAAACAATTGGA+TGG + chr2_1:71927161-71927180 Msa0222640:three_prime_UTR 35.0%
TCGAAGAAACCCATTGTTGA+CGG - chr2_1:71921835-71921854 None:intergenic 40.0%
GTGAAGGGTAAGGTATGTTT+AGG - chr2_1:71921858-71921877 None:intergenic 40.0%
!! GGATTTAGAAGGTTTTGTGG+TGG - chr2_1:71921881-71921900 None:intergenic 40.0%
!! GGTGGATTTAGAAGGTTTTG+TGG - chr2_1:71921884-71921903 None:intergenic 40.0%
ATTCCATTGCTTTAACAGCG+AGG - chr2_1:71921927-71921946 None:intergenic 40.0%
GCAATGGAATTAGGTTACAC+AGG + chr2_1:71921937-71921956 Msa0222640:CDS 40.0%
GATTGAGCAACGATGGTTAT+CGG - chr2_1:71921998-71922017 None:intergenic 40.0%
TTGTGTTGAGAATGCTTTGC+AGG + chr2_1:71922143-71922162 Msa0222640:CDS 40.0%
! TGATGTTGCTTGTGAGAGAA+TGG + chr2_1:71922245-71922264 Msa0222640:CDS 40.0%
TAGGATAGTCAGATCACTAG+AGG + chr2_1:71922541-71922560 Msa0222640:intron 40.0%
! TAGTTCTCCGTGTTTTCGTA+TGG + chr2_1:71922948-71922967 Msa0222640:intron 40.0%
! AGTTCTCCGTGTTTTCGTAT+GGG + chr2_1:71922949-71922968 Msa0222640:intron 40.0%
TATGGTTAAAATGGCTACCC+AGG + chr2_1:71923410-71923429 Msa0222640:CDS 40.0%
TGGCTTATTAATACACAGCG+TGG + chr2_1:71923504-71923523 Msa0222640:intron 40.0%
TTGCTGATGTCCAATTAAGG+AGG + chr2_1:71923559-71923578 Msa0222640:CDS 40.0%
GCAGTTAATTTCCAATGCCA+AGG + chr2_1:71923581-71923600 Msa0222640:CDS 40.0%
GCAGTTATGGGGTCAATATA+TGG - chr2_1:71923865-71923884 None:intergenic 40.0%
TGTTGCGCAAGCTTACTATA+CGG - chr2_1:71923929-71923948 None:intergenic 40.0%
AAGCTTGCGCAACAGAATAT+TGG + chr2_1:71923935-71923954 Msa0222640:intron 40.0%
AACAACTAAGAAAGGTTGGG+GGG + chr2_1:71924093-71924112 Msa0222640:intron 40.0%
TATGGAATCCCTACTGATGA+AGG + chr2_1:71924139-71924158 Msa0222640:intron 40.0%
ATGGAATCCCTACTGATGAA+GGG + chr2_1:71924140-71924159 Msa0222640:intron 40.0%
ACCTTCCGTGTTTATAAGCA+GGG + chr2_1:71924179-71924198 Msa0222640:intron 40.0%
TGGATCCCTGCTTATAAACA+CGG - chr2_1:71924187-71924206 None:intergenic 40.0%
TATAAGCAGGGATCCAGTAT+AGG + chr2_1:71924191-71924210 Msa0222640:intron 40.0%
GATTCCTAATCAGCCTATAC+TGG - chr2_1:71924207-71924226 None:intergenic 40.0%
!!! GATTTTAACTAACCAGCGCT+AGG + chr2_1:71924263-71924282 Msa0222640:intron 40.0%
TAAAGAGATTCCTTGCGAAC+TGG + chr2_1:71924412-71924431 Msa0222640:intron 40.0%
AAATCCAGGAACAGGGTAAT+GGG - chr2_1:71924554-71924573 None:intergenic 40.0%
GGAAATTGAAATCCAGGAAC+AGG - chr2_1:71924562-71924581 None:intergenic 40.0%
TCATAGATCTTATGAGGGTC+AGG - chr2_1:71924620-71924639 None:intergenic 40.0%
! ACATGTAGCTGTTGATTGAC+TGG + chr2_1:71924708-71924727 Msa0222640:intron 40.0%
!!! ATTTTCAAGTGCTGCTCCTT+CGG + chr2_1:71924751-71924770 Msa0222640:CDS 40.0%
CTTCGGTGAATGAACTTAGA+GGG + chr2_1:71924768-71924787 Msa0222640:CDS 40.0%
ATTATTTGGGCTCTCCAAAG+AGG + chr2_1:71924817-71924836 Msa0222640:intron 40.0%
! AGCTGATTTAGCTTCCTCTT+TGG - chr2_1:71924834-71924853 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG - chr2_1:71924910-71924929 None:intergenic 40.0%
AATCTGTGTGAAATGAGCCA+AGG + chr2_1:71925078-71925097 Msa0222640:intron 40.0%
ATCTGTGTGAAATGAGCCAA+GGG + chr2_1:71925079-71925098 Msa0222640:intron 40.0%
AGCCAAGGGGTCAAATAAAT+TGG + chr2_1:71925093-71925112 Msa0222640:intron 40.0%
GCCAAGGGGTCAAATAAATT+GGG + chr2_1:71925094-71925113 Msa0222640:intron 40.0%
TCCCAATTTATTTGACCCCT+TGG - chr2_1:71925098-71925117 None:intergenic 40.0%
AGGGGTCAAATAAATTGGGA+CGG + chr2_1:71925098-71925117 Msa0222640:intron 40.0%
GTCAAATAAATTGGGACGGA+GGG + chr2_1:71925102-71925121 Msa0222640:intron 40.0%
!!! GGAGTAGTGTTTTGGTTCTA+GGG + chr2_1:71925123-71925142 Msa0222640:intron 40.0%
! TGACATTCTGAATGGCTTGT+AGG + chr2_1:71925177-71925196 Msa0222640:intron 40.0%
! GACATTCTGAATGGCTTGTA+GGG + chr2_1:71925178-71925197 Msa0222640:intron 40.0%
AGTCTTTGATGCTTTACAGG+AGG - chr2_1:71925372-71925391 None:intergenic 40.0%
TGCAGTCTTTGATGCTTTAC+AGG - chr2_1:71925375-71925394 None:intergenic 40.0%
CATTTGCAGGTAAGAAATCC+TGG - chr2_1:71925454-71925473 None:intergenic 40.0%
!! ATAGAGAGAGTGTCATTTGC+AGG - chr2_1:71925467-71925486 None:intergenic 40.0%
! TCAGTTAAGTTGTTGGGTAC+AGG - chr2_1:71925548-71925567 None:intergenic 40.0%
GATGATCTATCGTCTTGCTT+TGG - chr2_1:71925596-71925615 None:intergenic 40.0%
GCAAGACGATAGATCATCAT+TGG + chr2_1:71925598-71925617 Msa0222640:CDS 40.0%
GACGATAGATCATCATTGGA+TGG + chr2_1:71925602-71925621 Msa0222640:CDS 40.0%
TCTGAGAAAAACGTACACAG+CGG + chr2_1:71925662-71925681 Msa0222640:CDS 40.0%
GAGATAGACACTGAGACAAA+TGG + chr2_1:71925710-71925729 Msa0222640:CDS 40.0%
!! TATTGATTCAGATGTCCGGA+TGG + chr2_1:71925757-71925776 Msa0222640:CDS 40.0%
AAAAATTGCGAAAGCCACAG+TGG + chr2_1:71925820-71925839 Msa0222640:CDS 40.0%
! GACTGCTTGGTTAAGTTGTT+AGG - chr2_1:71925908-71925927 None:intergenic 40.0%
TTTCTCTTGCGCAAGATGAA+AGG + chr2_1:71925942-71925961 Msa0222640:CDS 40.0%
CTGACAAATGCCACAAAGTT+AGG + chr2_1:71926082-71926101 Msa0222640:CDS 40.0%
! AGATGTTGATTGCACCCAAT+TGG + chr2_1:71926126-71926145 Msa0222640:CDS 40.0%
GTGCATCTCAAGTAATGTGT+TGG + chr2_1:71926180-71926199 Msa0222640:CDS 40.0%
!!! ATCCATAGGCGTCATTTTTC+CGG + chr2_1:71926291-71926310 Msa0222640:CDS 40.0%
TACTTCTGTAACATCAGTGG+AGG + chr2_1:71926447-71926466 Msa0222640:CDS 40.0%
ACTTCAACTGCATCAGTTTC+TGG - chr2_1:71926490-71926509 None:intergenic 40.0%
!! TCATCAAAAGGTGTTTGGTC+AGG - chr2_1:71926523-71926542 None:intergenic 40.0%
CGCTTCAATGGAAAGAAAAC+TGG - chr2_1:71926946-71926965 None:intergenic 40.0%
AATAACCCATCGAGCTTTCA+GGG - chr2_1:71927124-71927143 None:intergenic 40.0%
AAATAACCCATCGAGCTTTC+AGG - chr2_1:71927125-71927144 None:intergenic 40.0%
TGTGTGTGTTTCCCTAAGTT+TGG - chr2_1:71927151-71927170 None:intergenic 40.0%
GGGAAACACACACAAACAAT+TGG + chr2_1:71927157-71927176 Msa0222640:three_prime_UTR 40.0%
AACCCTCAACTCTTAAACCC+TGG + chr2_1:71921780-71921799 Msa0222640:five_prime_UTR 45.0%
CACCAGGGTTTAAGAGTTGA+GGG - chr2_1:71921785-71921804 None:intergenic 45.0%
AAGAAACCCATTGTTGACGG+CGG - chr2_1:71921832-71921851 None:intergenic 45.0%
!!! AAGGTTTTGTGGTGGGTGAA+GGG - chr2_1:71921873-71921892 None:intergenic 45.0%
ACATTACGCCTTTCATCGTG+CGG - chr2_1:71921975-71921994 None:intergenic 45.0%
GAGAGAAGAGAGAGAAAGTG+GGG - chr2_1:71922022-71922041 None:intergenic 45.0%
GGAGAGAAGAGAGAGAAAGT+GGG - chr2_1:71922023-71922042 None:intergenic 45.0%
AGGAGAGAAGAGAGAGAAAG+TGG - chr2_1:71922024-71922043 None:intergenic 45.0%
CAAGAAACGGAACGACATTG+AGG - chr2_1:71922044-71922063 None:intergenic 45.0%
TTTCGGCTTCTACTCCGTTT+CGG + chr2_1:71922100-71922119 Msa0222640:CDS 45.0%
! TGTTGCTTGTGAGAGAATGG+CGG + chr2_1:71922248-71922267 Msa0222640:CDS 45.0%
AAGAGAAGACCTGCTCAGTA+AGG + chr2_1:71922504-71922523 Msa0222640:intron 45.0%
ATCTACTCTCCTTACTGAGC+AGG - chr2_1:71922516-71922535 None:intergenic 45.0%
GAACACTCAAGAGCAAACCT+GGG - chr2_1:71923430-71923449 None:intergenic 45.0%
AGAACACTCAAGAGCAAACC+TGG - chr2_1:71923431-71923450 None:intergenic 45.0%
GCAGCTATTTACCTTGGCAT+TGG - chr2_1:71923595-71923614 None:intergenic 45.0%
AGGGAAGCAGCTATTTACCT+TGG - chr2_1:71923601-71923620 None:intergenic 45.0%
AGTTTCATGGACAGGTGCAT+AGG + chr2_1:71923897-71923916 Msa0222640:intron 45.0%
TGGAATCCCTACTGATGAAG+GGG + chr2_1:71924141-71924160 Msa0222640:intron 45.0%
CACCTTCCGTGTTTATAAGC+AGG + chr2_1:71924178-71924197 Msa0222640:intron 45.0%
TCCCTGCTTATAAACACGGA+AGG - chr2_1:71924183-71924202 None:intergenic 45.0%
GGATCCAGTATAGGCTGATT+AGG + chr2_1:71924200-71924219 Msa0222640:intron 45.0%
CTGTTAGCATGCATGACCAT+GGG + chr2_1:71924386-71924405 Msa0222640:intron 45.0%
TGTTAGCATGCATGACCATG+GGG + chr2_1:71924387-71924406 Msa0222640:intron 45.0%
! TTGATTCGTTCCAGTTCGCA+AGG - chr2_1:71924425-71924444 None:intergenic 45.0%
GAAATCCAGGAACAGGGTAA+TGG - chr2_1:71924555-71924574 None:intergenic 45.0%
AGATGAGATCCTGCTCTAAC+AGG - chr2_1:71924583-71924602 None:intergenic 45.0%
TAGATCTTATGAGGGTCAGG+AGG - chr2_1:71924617-71924636 None:intergenic 45.0%
CCTCTAAGTTCATTCACCGA+AGG - chr2_1:71924770-71924789 None:intergenic 45.0%
CCTTCGGTGAATGAACTTAG+AGG + chr2_1:71924767-71924786 Msa0222640:CDS 45.0%
TCTGTGTGAAATGAGCCAAG+GGG + chr2_1:71925080-71925099 Msa0222640:intron 45.0%
GGTCAAATAAATTGGGACGG+AGG + chr2_1:71925101-71925120 Msa0222640:intron 45.0%
!!! GGGAGTAGTGTTTTGGTTCT+AGG + chr2_1:71925122-71925141 Msa0222640:intron 45.0%
!!! TTTTGGTTCTAGGGACCACT+GGG + chr2_1:71925132-71925151 Msa0222640:intron 45.0%
TATGTTAAACACTGGCCCAG+TGG - chr2_1:71925150-71925169 None:intergenic 45.0%
TCGCTTTCTCCTTAGAGCAT+TGG - chr2_1:71925213-71925232 None:intergenic 45.0%
! GGCTGCTCAGTTAAGTTGTT+GGG - chr2_1:71925554-71925573 None:intergenic 45.0%
GGACAAACATCAGTCCTGTT+GGG - chr2_1:71925575-71925594 None:intergenic 45.0%
TGGACAAACATCAGTCCTGT+TGG - chr2_1:71925576-71925595 None:intergenic 45.0%
TGAGACAAATGGTGCGAAGT+TGG + chr2_1:71925721-71925740 Msa0222640:CDS 45.0%
! ACTTTTCTACGTCGTCCATC+CGG - chr2_1:71925775-71925794 None:intergenic 45.0%
AAGAGAAATGTGGAGCCTGT+CGG - chr2_1:71925930-71925949 None:intergenic 45.0%
CATCTTGCGCAAGAGAAATG+TGG - chr2_1:71925940-71925959 None:intergenic 45.0%
!!! GGCTGTTTTTCGTTCTCATG+TGG - chr2_1:71926217-71926236 None:intergenic 45.0%
GGAAAAATGACGCCTATGGA+TGG - chr2_1:71926292-71926311 None:intergenic 45.0%
TGCTTTGCATGTTCTGTAGC+CGG - chr2_1:71926313-71926332 None:intergenic 45.0%
AATTGCTGAGCATACAGTGG+TGG + chr2_1:71926411-71926430 Msa0222640:CDS 45.0%
TCTGTAACATCAGTGGAGGA+TGG + chr2_1:71926451-71926470 Msa0222640:CDS 45.0%
! AACTACATGGACTGCTGAGA+GGG - chr2_1:71926740-71926759 None:intergenic 45.0%
! AAACTACATGGACTGCTGAG+AGG - chr2_1:71926741-71926760 None:intergenic 45.0%
GCTTTCAGGGTTGAAGAAAC+CGG - chr2_1:71927111-71927130 None:intergenic 45.0%
TTCAACCCTGAAAGCTCGAT+GGG + chr2_1:71927116-71927135 Msa0222640:three_prime_UTR 45.0%
CCACCAGGGTTTAAGAGTTG+AGG - chr2_1:71921786-71921805 None:intergenic 50.0%
CCTCAACTCTTAAACCCTGG+TGG + chr2_1:71921783-71921802 Msa0222640:five_prime_UTR 50.0%
ATTCCACCGCCGTCAACAAT+GGG + chr2_1:71921823-71921842 Msa0222640:exon 50.0%
!! TTTGTGGTGGGTGAAGGGTA+AGG - chr2_1:71921868-71921887 None:intergenic 50.0%
!!! GAAGGTTTTGTGGTGGGTGA+AGG - chr2_1:71921874-71921893 None:intergenic 50.0%
!! CGTTCGGTTGTTTTCGATGG+TGG - chr2_1:71921902-71921921 None:intergenic 50.0%
GCTTACAACCGCACGATGAA+AGG + chr2_1:71921964-71921983 Msa0222640:CDS 50.0%
AAGCTTCATCGGGAGCTTCT+TGG + chr2_1:71922075-71922094 Msa0222640:CDS 50.0%
TCGGGAGCTTCTTGGAGTTT+CGG + chr2_1:71922083-71922102 Msa0222640:CDS 50.0%
ATCCTCGTGTACTGCCGAAA+CGG - chr2_1:71922117-71922136 None:intergenic 50.0%
! GCAGGCGAATGCTTTGAATG+CGG + chr2_1:71922161-71922180 Msa0222640:CDS 50.0%
! CAGGCGAATGCTTTGAATGC+GGG + chr2_1:71922162-71922181 Msa0222640:CDS 50.0%
! AGGCGAATGCTTTGAATGCG+GGG + chr2_1:71922163-71922182 Msa0222640:CDS 50.0%
!!! ACAGCGTGGCGTTGTTTTTG+AGG + chr2_1:71923518-71923537 Msa0222640:intron 50.0%
GCACATCCCCTTCATCAGTA+GGG - chr2_1:71924150-71924169 None:intergenic 50.0%
TTGCATATAGAGCCTAGCGC+TGG - chr2_1:71924278-71924297 None:intergenic 50.0%
TTGCATACAGAGCCAAGCAC+TGG - chr2_1:71924311-71924330 None:intergenic 50.0%
GCTGTTAGCATGCATGACCA+TGG + chr2_1:71924385-71924404 Msa0222640:intron 50.0%
GTTAGCATGCATGACCATGG+GGG + chr2_1:71924388-71924407 Msa0222640:intron 50.0%
TTAGCATGCATGACCATGGG+GGG + chr2_1:71924389-71924408 Msa0222640:intron 50.0%
AGGAATCTCTTTACCCCCCA+TGG - chr2_1:71924405-71924424 None:intergenic 50.0%
TGTTCCCATTACCCTGTTCC+TGG + chr2_1:71924547-71924566 Msa0222640:intron 50.0%
ATGAGGGTCAGGAGGTCTAA+TGG - chr2_1:71924609-71924628 None:intergenic 50.0%
! CTGTTGATTGACTGGACTCG+TGG + chr2_1:71924716-71924735 Msa0222640:CDS 50.0%
ATGGGTCAGATATTCCGGGA+CGG - chr2_1:71924906-71924925 None:intergenic 50.0%
!!! GTTTTGGTTCTAGGGACCAC+TGG + chr2_1:71925131-71925150 Msa0222640:intron 50.0%
TGGGGAAGGTGATATCCTGT+TGG + chr2_1:71925322-71925341 Msa0222640:CDS 50.0%
CAAGACAGCCTTCCATCTCA+AGG + chr2_1:71925419-71925438 Msa0222640:CDS 50.0%
! GGGCTGCTCAGTTAAGTTGT+TGG - chr2_1:71925555-71925574 None:intergenic 50.0%
ACTTAACTGAGCAGCCCAAC+AGG + chr2_1:71925558-71925577 Msa0222640:CDS 50.0%
ACTTAACCAAGCAGTCCGAC+AGG + chr2_1:71925912-71925931 Msa0222640:CDS 50.0%
AGCCGGAAAAATGACGCCTA+TGG - chr2_1:71926296-71926315 None:intergenic 50.0%
ACCTGAGACAGACTGAACAG+AGG - chr2_1:71926650-71926669 None:intergenic 50.0%
! ATGGACTGCTGAGAGGGAAA+TGG - chr2_1:71926734-71926753 None:intergenic 50.0%
GTAGACGATGTGCGCTTGTA+GGG - chr2_1:71926833-71926852 None:intergenic 50.0%
AGTAGACGATGTGCGCTTGT+AGG - chr2_1:71926834-71926853 None:intergenic 50.0%
ATCCAGGTCGATTGCGAGTT+AGG + chr2_1:71926911-71926930 Msa0222640:intron 50.0%
CTTCAACCCTGAAAGCTCGA+TGG + chr2_1:71927115-71927134 Msa0222640:three_prime_UTR 50.0%
! TTAAACCCTGGTGGCGCAAG+CGG + chr2_1:71921792-71921811 Msa0222640:five_prime_UTR 55.0%
TTGTTGACGGCGGTGGAATC+AGG - chr2_1:71921822-71921841 None:intergenic 55.0%
GATTCCACCGCCGTCAACAA+TGG + chr2_1:71921822-71921841 Msa0222640:exon 55.0%
AAACCCATTGTTGACGGCGG+TGG - chr2_1:71921829-71921848 None:intergenic 55.0%
!! GCGCGTTCGGTTGTTTTCGA+TGG - chr2_1:71921905-71921924 None:intergenic 55.0%
CTTTAACAGCGAGGCGCGTT+CGG - chr2_1:71921918-71921937 None:intergenic 55.0%
GCGCCTCGCTGTTAAAGCAA+TGG + chr2_1:71921921-71921940 Msa0222640:CDS 55.0%
GTGGGGAGATTGAGCAACGA+TGG - chr2_1:71922005-71922024 None:intergenic 55.0%
CGTTCCGTTTCTTGCGTCGT+CGG + chr2_1:71922050-71922069 Msa0222640:CDS 55.0%
TTCGCCGACGACGCAAGAAA+CGG - chr2_1:71922057-71922076 None:intergenic 55.0%
CGCACATCCCCTTCATCAGT+AGG - chr2_1:71924151-71924170 None:intergenic 55.0%
ACTGATGAAGGGGATGTGCG+CGG + chr2_1:71924151-71924170 Msa0222640:intron 55.0%
CTTAGAGGGCCGTGTGATGT+TGG + chr2_1:71924782-71924801 Msa0222640:CDS 55.0%
CCTTTATACTCCCTCCGTCC+CGG + chr2_1:71924889-71924908 Msa0222640:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG - chr2_1:71924902-71924921 None:intergenic 55.0%
! GGACGGAGGGAGTAGTGTTT+TGG + chr2_1:71925115-71925134 Msa0222640:intron 55.0%
CAGGATATCACCTTCCCCAC+TGG - chr2_1:71925321-71925340 None:intergenic 55.0%
GCCTCTGTTCAGTCTGTCTC+AGG + chr2_1:71926646-71926665 Msa0222640:CDS 55.0%
CGTCGTCGGCGAAGCTTCAT+CGG + chr2_1:71922064-71922083 Msa0222640:CDS 60.0%
GTCGTCGGCGAAGCTTCATC+GGG + chr2_1:71922065-71922084 Msa0222640:CDS 60.0%
CTCCGTTTCGGCAGTACACG+AGG + chr2_1:71922112-71922131 Msa0222640:CDS 60.0%
CTGATGAAGGGGATGTGCGC+GGG + chr2_1:71924152-71924171 Msa0222640:intron 60.0%
! CCGGGACGGAGGGAGTATAA+AGG - chr2_1:71924892-71924911 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG - chr2_1:71924903-71924922 None:intergenic 60.0%
AAGTGGGACCCTCTCTCCAG+TGG + chr2_1:71925302-71925321 Msa0222640:CDS 60.0%
AGTGGGACCCTCTCTCCAGT+GGG + chr2_1:71925303-71925322 Msa0222640:CDS 60.0%
CACCTTCCCCACTGGAGAGA+GGG - chr2_1:71925313-71925332 None:intergenic 60.0%
TCACCTTCCCCACTGGAGAG+AGG - chr2_1:71925314-71925333 None:intergenic 60.0%
CGCCTAACTCGCAATCGACC+TGG - chr2_1:71926916-71926935 None:intergenic 60.0%
! GTTTGCCGCTTGCGCCACCA+GGG - chr2_1:71921800-71921819 None:intergenic 65.0%
GTGGGACCCTCTCTCCAGTG+GGG + chr2_1:71925304-71925323 Msa0222640:CDS 65.0%
GACCCTCTCTCCAGTGGGGA+AGG + chr2_1:71925308-71925327 Msa0222640:CDS 65.0%
GTGGAGCCTGTCGGACTGCT+TGG - chr2_1:71925921-71925940 None:intergenic 65.0%
! GGTTTGCCGCTTGCGCCACC+AGG - chr2_1:71921801-71921820 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 71921749 71927200 71921749 ID=Msa0222640;Name=Msa0222640
chr2_1 mRNA 71921749 71927200 71921749 ID=Msa0222640-mRNA-1;Parent=Msa0222640;Name=Msa0222640-mRNA-1;_AED=0.04;_eAED=0.04;_QI=92|0.8|0.83|1|1|1|6|171|755
chr2_1 exon 71921749 71922269 71921749 ID=Msa0222640-mRNA-1:exon:20752;Parent=Msa0222640-mRNA-1
chr2_1 exon 71923354 71923431 71923354 ID=Msa0222640-mRNA-1:exon:20753;Parent=Msa0222640-mRNA-1
chr2_1 exon 71923522 71923602 71923522 ID=Msa0222640-mRNA-1:exon:20754;Parent=Msa0222640-mRNA-1
chr2_1 exon 71924716 71924813 71924716 ID=Msa0222640-mRNA-1:exon:20755;Parent=Msa0222640-mRNA-1
chr2_1 exon 71925199 71926667 71925199 ID=Msa0222640-mRNA-1:exon:20756;Parent=Msa0222640-mRNA-1
chr2_1 exon 71926917 71927200 71926917 ID=Msa0222640-mRNA-1:exon:20757;Parent=Msa0222640-mRNA-1
chr2_1 five_prime_UTR 71921749 71921840 71921749 ID=Msa0222640-mRNA-1:five_prime_utr;Parent=Msa0222640-mRNA-1
chr2_1 CDS 71921841 71922269 71921841 ID=Msa0222640-mRNA-1:cds;Parent=Msa0222640-mRNA-1
chr2_1 CDS 71923354 71923431 71923354 ID=Msa0222640-mRNA-1:cds;Parent=Msa0222640-mRNA-1
chr2_1 CDS 71923522 71923602 71923522 ID=Msa0222640-mRNA-1:cds;Parent=Msa0222640-mRNA-1
chr2_1 CDS 71924716 71924813 71924716 ID=Msa0222640-mRNA-1:cds;Parent=Msa0222640-mRNA-1
chr2_1 CDS 71925199 71926667 71925199 ID=Msa0222640-mRNA-1:cds;Parent=Msa0222640-mRNA-1
chr2_1 CDS 71926917 71927029 71926917 ID=Msa0222640-mRNA-1:cds;Parent=Msa0222640-mRNA-1
chr2_1 three_prime_UTR 71927030 71927200 71927030 ID=Msa0222640-mRNA-1:three_prime_utr;Parent=Msa0222640-mRNA-1
Gene Sequence

>Msa0222640

ATGGGTTTCTTCGACCTAAACATACCTTACCCTTCACCCACCACAAAACCTTCTAAATCCACCATCGAAAACAACCGAACGCGCCTCGCTGTTAAAGCAATGGAATTAGGTTACACAGGAATCGCTTACAACCGCACGATGAAAGGCGTAATGTCCGATAACCATCGTTGCTCAATCTCCCCACTTTCTCTCTCTTCTCTCCTCAATGTCGTTCCGTTTCTTGCGTCGTCGGCGAAGCTTCATCGGGAGCTTCTTGGAGTTTCGGCTTCTACTCCGTTTCGGCAGTACACGAGGATTACCGTTTGTGTTGAGAATGCTTTGCAGGCGAATGCTTTGAATGCGGGGAATCCGATTTTGAAGACTTATGATTTGGTTGCTGTTATGCCGTTGAATCAGAATGCGTTTGATGTTGCTTGTGAGAGAATGGCGGTAGATATCATTTCAATTGATTTTTCAGCTAAGTTGCCATTTAGGTTGAAGCAATCTATGGTTAAAATGGCTACCCAGCGTGGCGTTGTTTTTGAGGTTTCATACTCTGGTCTTATTGCTGATGTCCAATTAAGGAGGCAGTTAATTTCCAATGCCAAGCTGTTGATTGACTGGACTCGTGGACGAGACATTGTATTTTCAAGTGCTGCTCCTTCGGTGAATGAACTTAGAGGGCCGTGTGATGTTGGAAATTTGTTGGTTCTTTTAGCCAATGCTCTAAGGAGAAAGCGATTTCATAAAGAGGCAATAAGAGTAGAAGTTTTATCATCAGATGTAGCATCTCATTCTCAAGAGTTGCTAAAGTGGGACCCTCTCTCCAGTGGGGAAGGTGATATCCTGTTGGATGATATGGAAAATTCTGGTTCAGCCTCCTGTAAAGCATCAAAGACTGCAAAAGCCATTGACTTTGTTTCAGTACAAGACAGCCTTCCATCTCAAGGTTATAAATTCCAGGATTTCTTACCTGCAAATGACACTCTCTCTATCTTCTCAATTAATAAGGTAAACTTCATGCCTGTTGCCGAAAATGTAAATCAGTCAACACCTGTACCCAACAACTTAACTGAGCAGCCCAACAGGACTGATGTTTGTCCAAAGCAAGACGATAGATCATCATTGGATGGTATAACAAAACATCACATTGTGAGATGTGGCAATTTTTCTGAGAAAAACGTACACAGCGGAACTACTGAAGCTTTTCATTCTAAAGAGATAGACACTGAGACAAATGGTGCGAAGTTGGAACTGAAGAATTCTATTGATTCAGATGTCCGGATGGACGACGTAGAAAAGTCATTTACAGCCTCTTGTGAAGCATCAAAAATTGCGAAAGCCACAGTGGACAGTTATATTAATGGAAACTTACTTCCTGTTTCTGAAAAAGAAAATCAGTCAACACTGGAACCTAACAACTTAACCAAGCAGTCCGACAGGCTCCACATTTCTCTTGCGCAAGATGAAAGGTCATTATCATCTGACACTGTAGCAACAGATGATGTTGTGAGCTGTGAAGATATTTTTGAGAAAAATACACATAATGGAACTATTGAATCTTTCAATTCGAAGTTAGAGATTGACACTCTGACAAATGCCACAAAGTTAGGACTTCCAAATTTCAACGATTCAGATGTTGATTGCACCCAATTGGATGCAAAATCACTTGATTCACAGTCAGATTTGTGCATCTCAAGTAATGTGTTGGATAATTTAAAACCACATGAGAACGAAAAACAGCCTAAATCTTCAGTTGATCCTCACAATATTAATGAGAAAGTAGAAATTTCTACACCATCCATAGGCGTCATTTTTCCGGCTACAGAACATGCAAAGCACAATGAGAATAACTCTGATGTCAATTTAAATGCACATTTTTCAACGATGCATGAAAATTTGCCAAAGGAAGATTTTAAAATTGCTGAGCATACAGTGGTGGATATGAACACATCTACTTCTGTAACATCAGTGGAGGATGGACAATTTAACAAACCAGAAACTGATGCAGTTGAAGTTGATGAGATGCCTGACCAAACACCTTTTGATGAAATGAAAACGGAAGACGATTCTATAGCTGCAATACATTCATTTCCAGAAGTTATGGTGGAAGATAAAAAGTTTGGTGAAGTGAGCACTGATTCTGATCAATTAGCCTCTGTTCAGTCTGTCTCAGGTCGATTGCGAGTTAGGCGAAAGACACCAGTTTTCTTTCCATTGAAGCGGTTGTTTCATATGGTGCCTTTTAAGAAGAAAGGTAAAAAAGTTAAGAGAACTAATCCAAAGTAA

Protein sequence

>Msa0222640

MGFFDLNIPYPSPTTKPSKSTIENNRTRLAVKAMELGYTGIAYNRTMKGVMSDNHRCSISPLSLSSLLNVVPFLASSAKLHRELLGVSASTPFRQYTRITVCVENALQANALNAGNPILKTYDLVAVMPLNQNAFDVACERMAVDIISIDFSAKLPFRLKQSMVKMATQRGVVFEVSYSGLIADVQLRRQLISNAKLLIDWTRGRDIVFSSAAPSVNELRGPCDVGNLLVLLANALRRKRFHKEAIRVEVLSSDVASHSQELLKWDPLSSGEGDILLDDMENSGSASCKASKTAKAIDFVSVQDSLPSQGYKFQDFLPANDTLSIFSINKVNFMPVAENVNQSTPVPNNLTEQPNRTDVCPKQDDRSSLDGITKHHIVRCGNFSEKNVHSGTTEAFHSKEIDTETNGAKLELKNSIDSDVRMDDVEKSFTASCEASKIAKATVDSYINGNLLPVSEKENQSTLEPNNLTKQSDRLHISLAQDERSLSSDTVATDDVVSCEDIFEKNTHNGTIESFNSKLEIDTLTNATKLGLPNFNDSDVDCTQLDAKSLDSQSDLCISSNVLDNLKPHENEKQPKSSVDPHNINEKVEISTPSIGVIFPATEHAKHNENNSDVNLNAHFSTMHENLPKEDFKIAEHTVVDMNTSTSVTSVEDGQFNKPETDAVEVDEMPDQTPFDEMKTEDDSIAAIHSFPEVMVEDKKFGEVSTDSDQLASVQSVSGRLRVRRKTPVFFPLKRLFHMVPFKKKGKKVKRTNPK*