Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391010 | XP_003597301.2 | 91.364 | 579 | 50 | 0 | 3 | 581 | 196 | 774 | 0.0 | 1064 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391010 | sp|F4JXF1|GAF1_ARATH | 56.463 | 147 | 58 | 3 | 3 | 143 | 198 | 344 | 2.96e-44 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391010 | G7IU96 | 91.364 | 579 | 50 | 0 | 3 | 581 | 196 | 774 | 0.0 | 1064 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054440 | Msa0391010 | 0.806679 | 7.315585e-50 | -8.615850e-47 |
| Msa0054480 | Msa0391010 | 0.819154 | 1.348191e-52 | -8.615850e-47 |
| Msa0070700 | Msa0391010 | 0.812791 | 3.549511e-51 | -8.615850e-47 |
| Msa0118590 | Msa0391010 | 0.801922 | 7.163604e-49 | -8.615850e-47 |
| Msa0137550 | Msa0391010 | 0.802241 | 6.158778e-49 | -8.615850e-47 |
| Msa0144370 | Msa0391010 | 0.815526 | 8.835092e-52 | -8.615850e-47 |
| Msa0222640 | Msa0391010 | 0.849715 | 2.706373e-60 | -8.615850e-47 |
| Msa0391010 | Msa0542090 | 0.817323 | 3.500043e-52 | -8.615850e-47 |
| Msa0391010 | Msa0542130 | 0.815999 | 6.932076e-52 | -8.615850e-47 |
| Msa0391010 | Msa0685140 | 0.800154 | 1.646517e-48 | -8.615850e-47 |
| Msa0391010 | Msa0945440 | 0.803412 | 3.528875e-49 | -8.615850e-47 |
| Msa0309750 | Msa0391010 | 0.807039 | 6.139862e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391010 | MtrunA17_Chr2g0327631 | 91.364 | 579 | 50 | 0 | 3 | 581 | 196 | 774 | 0.0 | 1064 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391010 | AT5G59980.1 | 56.463 | 147 | 58 | 3 | 3 | 143 | 198 | 344 | 3.01e-45 | 169 |
| Msa0391010 | AT5G59980.4 | 56.463 | 147 | 58 | 3 | 3 | 143 | 198 | 344 | 5.79e-45 | 169 |
| Msa0391010 | AT5G59980.3 | 56.463 | 147 | 58 | 3 | 3 | 143 | 198 | 344 | 5.85e-45 | 169 |
| Msa0391010 | AT5G59980.2 | 56.463 | 147 | 58 | 3 | 3 | 143 | 198 | 344 | 7.94e-45 | 169 |
Find 87 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCAACTGCATCAGTTTC+TGG | 0.127926 | 3_2:+2249425 | None:intergenic |
| ACATCTGAATCGTTGAAATT+TGG | 0.153936 | 3_2:+2249803 | None:intergenic |
| GGAAATTTGTTGTTATTATT+TGG | 0.161706 | 3_2:-2250877 | Msa0391010:CDS |
| TGCAGTCTTTGATGCTTTAC+AGG | 0.185897 | 3_2:+2250540 | None:intergenic |
| GAAATTTGTTGTTATTATTT+GGG | 0.250514 | 3_2:-2250876 | Msa0391010:CDS |
| AGCTGATTTAGCTTCCTCTT+TGG | 0.274178 | 3_2:+2250849 | None:intergenic |
| CTCTATCTTCTCAATTAATA+AGG | 0.277921 | 3_2:-2250431 | Msa0391010:CDS |
| TGATATCCTGTTGGATGATA+TGG | 0.316857 | 3_2:-2250581 | Msa0391010:CDS |
| ATCCAGGTCGATTGCGAGTT+AGG | 0.341616 | 3_2:-2249001 | Msa0391010:intron |
| GGCTGCTCAGTTAAGTTGTT+GGG | 0.354319 | 3_2:+2250361 | None:intergenic |
| CTGACAAATGCCACAAAGTT+AGG | 0.354766 | 3_2:-2249830 | Msa0391010:CDS |
| TTATCTTCCACCATAACTTC+TGG | 0.356790 | 3_2:+2249326 | None:intergenic |
| ATCTCAAGGTTATAAATTCC+AGG | 0.359075 | 3_2:-2250479 | Msa0391010:CDS |
| ACAGTGGACAGTTATATTAA+TGG | 0.363051 | 3_2:-2250076 | Msa0391010:CDS |
| CGCTTCAATGGAAAGAAAAC+TGG | 0.371087 | 3_2:+2248969 | None:intergenic |
| TTGGATGATATGGAAAATTC+TGG | 0.374387 | 3_2:-2250571 | Msa0391010:CDS |
| GACTGCTTGGTTAAGTTGTT+AGG | 0.375394 | 3_2:+2250007 | None:intergenic |
| TGAGGATCAACTGAAGATTT+AGG | 0.375525 | 3_2:+2249677 | None:intergenic |
| GCCTCTGTTCAGTCTGTCTC+AGG | 0.385373 | 3_2:-2249266 | Msa0391010:intron |
| ACATTCATTTCCAGAAGTTA+TGG | 0.390451 | 3_2:-2249336 | Msa0391010:CDS |
| ATAGAGAGAGTGTCATTTGC+AGG | 0.391299 | 3_2:+2250448 | None:intergenic |
| TCATTTCATCAAAAGGTGTT+TGG | 0.391879 | 3_2:+2249387 | None:intergenic |
| ATTGAAGCGGTTGTTTCATA+TGG | 0.392099 | 3_2:-2248955 | Msa0391010:CDS |
| CCTTCGGTGAATGAACTTAG+AGG | 0.398720 | 3_2:-2250913 | Msa0391010:CDS |
| ATATGAAACAACCGCTTCAA+TGG | 0.418609 | 3_2:+2248957 | None:intergenic |
| TCATCAAAAGGTGTTTGGTC+AGG | 0.422171 | 3_2:+2249392 | None:intergenic |
| GATGATCTATCGTCTTGCTT+TGG | 0.422900 | 3_2:+2250319 | None:intergenic |
| TCAGTTAAGTTGTTGGGTAC+AGG | 0.428275 | 3_2:+2250367 | None:intergenic |
| AGATGTTGATTGCACCCAAT+TGG | 0.429278 | 3_2:-2249786 | Msa0391010:CDS |
| ATTTGGAAGTCCTAACTTTG+TGG | 0.442083 | 3_2:+2249820 | None:intergenic |
| ACTTAACTGAGCAGCCCAAC+AGG | 0.442105 | 3_2:-2250354 | Msa0391010:CDS |
| GCAAGACGATAGATCATCAT+TGG | 0.446477 | 3_2:-2250314 | Msa0391010:CDS |
| GGGCTGCTCAGTTAAGTTGT+TGG | 0.447613 | 3_2:+2250360 | None:intergenic |
| GACCCTCTCTCCAGTGGGGA+AGG | 0.454890 | 3_2:-2250604 | Msa0391010:CDS |
| TGAGACAAATGGTGCGAAGT+TGG | 0.464101 | 3_2:-2250191 | Msa0391010:CDS |
| ACATGTAGCTGTTGATTGAC+TGG | 0.472181 | 3_2:-2250972 | Msa0391010:intron |
| GGACAAACATCAGTCCTGTT+GGG | 0.475053 | 3_2:+2250340 | None:intergenic |
| TCGCTTTCTCCTTAGAGCAT+TGG | 0.480554 | 3_2:+2250702 | None:intergenic |
| CATTTGCAGGTAAGAAATCC+TGG | 0.480981 | 3_2:+2250461 | None:intergenic |
| TGCTTTGCATGTTCTGTAGC+CGG | 0.485108 | 3_2:+2249602 | None:intergenic |
| TGGACAAACATCAGTCCTGT+TGG | 0.492256 | 3_2:+2250339 | None:intergenic |
| GTGGAGCCTGTCGGACTGCT+TGG | 0.497665 | 3_2:+2249994 | None:intergenic |
| ATTCTATTGATTCAGATGTC+CGG | 0.503522 | 3_2:-2250159 | Msa0391010:CDS |
| TTGTACTGAAACAAAGTCAA+TGG | 0.507684 | 3_2:+2250513 | None:intergenic |
| GAGATAGACACTGAGACAAA+TGG | 0.516634 | 3_2:-2250202 | Msa0391010:CDS |
| CTTAGAGGGCCGTGTGATGT+TGG | 0.524883 | 3_2:-2250898 | Msa0391010:CDS |
| CAGGATATCACCTTCCCCAC+TGG | 0.532237 | 3_2:+2250594 | None:intergenic |
| ATTCTCAAGAGTTGCTAAAG+TGG | 0.536803 | 3_2:-2250627 | Msa0391010:CDS |
| CATCTTGCGCAAGAGAAATG+TGG | 0.546884 | 3_2:+2249975 | None:intergenic |
| CACCTTCCCCACTGGAGAGA+GGG | 0.549180 | 3_2:+2250602 | None:intergenic |
| TGGAATTTATAACCTTGAGA+TGG | 0.549686 | 3_2:+2250481 | None:intergenic |
| TTTCTCTTGCGCAAGATGAA+AGG | 0.550064 | 3_2:-2249970 | Msa0391010:CDS |
| ACTTTCTCATTAATATTGTG+AGG | 0.558920 | 3_2:+2249659 | None:intergenic |
| ACTTAACCAAGCAGTCCGAC+AGG | 0.568640 | 3_2:-2250000 | Msa0391010:CDS |
| TTCTCAAGAGTTGCTAAAGT+GGG | 0.573177 | 3_2:-2250626 | Msa0391010:CDS |
| ATTTATAACCTTGAGATGGA+AGG | 0.574614 | 3_2:+2250485 | None:intergenic |
| CTGTTGATTGACTGGACTCG+TGG | 0.578599 | 3_2:-2250964 | Msa0391010:CDS |
| GTGCATCTCAAGTAATGTGT+TGG | 0.580319 | 3_2:-2249732 | Msa0391010:CDS |
| TTCATTTCCAGAAGTTATGG+TGG | 0.582059 | 3_2:-2249333 | Msa0391010:CDS |
| AGTCTTTGATGCTTTACAGG+AGG | 0.583066 | 3_2:+2250543 | None:intergenic |
| GAAATTTCTACACCATCCAT+AGG | 0.588034 | 3_2:-2249635 | Msa0391010:CDS |
| GACGATAGATCATCATTGGA+TGG | 0.590101 | 3_2:-2250310 | Msa0391010:CDS |
| GAGAAAGCGATTTCATAAAG+AGG | 0.596412 | 3_2:-2250689 | Msa0391010:CDS |
| AAGTGGGACCCTCTCTCCAG+TGG | 0.596526 | 3_2:-2250610 | Msa0391010:CDS |
| AGTGGGACCCTCTCTCCAGT+GGG | 0.598483 | 3_2:-2250609 | Msa0391010:CDS |
| AACAAATTTCCAACATCACA+CGG | 0.601223 | 3_2:+2250889 | None:intergenic |
| AAACATCACATTGTGAGATG+TGG | 0.603238 | 3_2:-2250280 | Msa0391010:CDS |
| TACTTCTGTAACATCAGTGG+AGG | 0.603425 | 3_2:-2249465 | Msa0391010:CDS |
| AAAAGAAAATCAGTCAACAC+TGG | 0.607104 | 3_2:-2250032 | Msa0391010:CDS |
| CCTCTAAGTTCATTCACCGA+AGG | 0.609236 | 3_2:+2250913 | None:intergenic |
| TCACCTTCCCCACTGGAGAG+AGG | 0.612417 | 3_2:+2250601 | None:intergenic |
| ATCTACTTCTGTAACATCAG+TGG | 0.614608 | 3_2:-2249468 | Msa0391010:CDS |
| TGCAAGTAACAATAATAACC+TGG | 0.617391 | 3_2:+2248870 | None:intergenic |
| TCTGTAACATCAGTGGAGGA+TGG | 0.618825 | 3_2:-2249461 | Msa0391010:CDS |
| CAAGACAGCCTTCCATCTCA+AGG | 0.620080 | 3_2:-2250493 | Msa0391010:CDS |
| AAGAGAAATGTGGAGCCTGT+CGG | 0.622702 | 3_2:+2249985 | None:intergenic |
| GGCCTAAACGACAATGCCAA+AGG | 0.627244 | 3_2:-2251990 | None:intergenic |
| TGGGGAAGGTGATATCCTGT+TGG | 0.627773 | 3_2:-2250590 | Msa0391010:CDS |
| TATTGATTCAGATGTCCGGA+TGG | 0.633396 | 3_2:-2250155 | Msa0391010:CDS |
| CTTCGGTGAATGAACTTAGA+GGG | 0.633683 | 3_2:-2250912 | Msa0391010:CDS |
| GATGCATGAAAATTTGCCAA+AGG | 0.640671 | 3_2:-2249534 | Msa0391010:CDS |
| ATTATTTGGGCTCTCCAAAG+AGG | 0.642445 | 3_2:-2250863 | Msa0391010:CDS |
| TAAAATTGCTGAGCATACAG+TGG | 0.659450 | 3_2:-2249504 | Msa0391010:CDS |
| AATTGCTGAGCATACAGTGG+TGG | 0.659637 | 3_2:-2249501 | Msa0391010:CDS |
| ATTAATATAACTGTCCACTG+TGG | 0.719711 | 3_2:+2250078 | None:intergenic |
| ACCTGAGACAGACTGAACAG+AGG | 0.728353 | 3_2:+2249265 | None:intergenic |
| GTGGGACCCTCTCTCCAGTG+GGG | 0.732838 | 3_2:-2250608 | Msa0391010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATATTATCCAAATAAA+CGG | - | chr3_2:2248981-2249000 | Msa0391010:CDS | 15.0% |
| !!! | TGGTTTTTATTTTACAATAA+AGG | + | chr3_2:2249019-2249038 | None:intergenic | 15.0% |
| !! | TATTATTTCAATTTCTTGTT+TGG | + | chr3_2:2249048-2249067 | None:intergenic | 15.0% |
| !! | TTATTTAGTCATCATTTATT+TGG | - | chr3_2:2249493-2249512 | Msa0391010:CDS | 15.0% |
| !!! | AAATTTAAACAGATATTTTG+TGG | + | chr3_2:2249670-2249689 | None:intergenic | 15.0% |
| !! | AAGTTAATAAAATGTCTTAA+TGG | + | chr3_2:2249836-2249855 | None:intergenic | 15.0% |
| !!! | GAAATTTGTTGTTATTATTT+GGG | - | chr3_2:2249965-2249984 | Msa0391010:CDS | 15.0% |
| !! | TTAGCATTAATGTTATAGAT+AGG | - | chr3_2:2248907-2248926 | Msa0391010:CDS | 20.0% |
| !!! | GGAAATTTGTTGTTATTATT+TGG | - | chr3_2:2249964-2249983 | Msa0391010:CDS | 20.0% |
| !!! | TAAAATCCTTTATAGTGTTT+TGG | - | chr3_2:2250044-2250063 | Msa0391010:CDS | 20.0% |
| !! | TTTGAGAAAAATACACATAA+TGG | - | chr3_2:2250948-2250967 | Msa0391010:CDS | 20.0% |
| !! | CACTAATAAATATCTTTATC+TGG | - | chr3_2:2251610-2251629 | Msa0391010:intron | 20.0% |
| !!! | TTTTTACCTTTCTTCTTAAA+AGG | + | chr3_2:2251914-2251933 | None:intergenic | 20.0% |
| !! | GGAATAAAAACTAATTACTT+TGG | + | chr3_2:2251953-2251972 | None:intergenic | 20.0% |
| !!! | AAGTAATTAGTTTTTATTCC+AGG | - | chr3_2:2251953-2251972 | Msa0391010:intron | 20.0% |
| ! | TCTATAACATTAATGCTAAG+AGG | + | chr3_2:2248906-2248925 | None:intergenic | 25.0% |
| !!! | GCTAATGCAATTTTGATTAA+TGG | + | chr3_2:2248958-2248977 | None:intergenic | 25.0% |
| ! | AATTGACTGTGTATACTTTA+TGG | - | chr3_2:2249282-2249301 | Msa0391010:CDS | 25.0% |
| ! | AAAATCTGTATATGCTTGAT+AGG | + | chr3_2:2249410-2249429 | None:intergenic | 25.0% |
| ! | CAAAATCATAGATCTTATGA+GGG | + | chr3_2:2249786-2249805 | None:intergenic | 25.0% |
| ! | TCAAAATCATAGATCTTATG+AGG | + | chr3_2:2249787-2249806 | None:intergenic | 25.0% |
| !!! | TTTATAGTGTTTTGGTTCTA+GGG | - | chr3_2:2250052-2250071 | Msa0391010:CDS | 25.0% |
| ! | CTCTATCTTCTCAATTAATA+AGG | - | chr3_2:2250410-2250429 | Msa0391010:CDS | 25.0% |
| !!! | TGTTGACTGATTTACATTTT+CGG | + | chr3_2:2250454-2250473 | None:intergenic | 25.0% |
| !!! | TGATTTTCTTTTTCAGAAAC+AGG | + | chr3_2:2250801-2250820 | None:intergenic | 25.0% |
| ! | ACTTTCTCATTAATATTGTG+AGG | + | chr3_2:2251185-2251204 | None:intergenic | 25.0% |
| !!! | GCAATTTTAAAATCTTCCTT+TGG | + | chr3_2:2251326-2251345 | None:intergenic | 25.0% |
| !! | ACCTTTTGATGAAATGAAAA+CGG | - | chr3_2:2251460-2251479 | Msa0391010:intron | 25.0% |
| ! | TTGAAACTATTCAAACTACA+TGG | + | chr3_2:2251682-2251701 | None:intergenic | 25.0% |
| ! | TTATGTCACAACACTTAAAA+TGG | + | chr3_2:2251795-2251814 | None:intergenic | 25.0% |
| TAAGTCGGATTTAACTCATT+TGG | - | chr3_2:2248874-2248893 | Msa0391010:three_prime_UTR | 30.0% | |
| CAAATGTTGTTCCGTTTATT+TGG | + | chr3_2:2248995-2249014 | None:intergenic | 30.0% | |
| ! | TTTCAATTTCTTGTTTGGCA+AGG | + | chr3_2:2249043-2249062 | None:intergenic | 30.0% |
| !! | TGACTGGTTATTAAGTTTTG+AGG | - | chr3_2:2249206-2249225 | Msa0391010:intron | 30.0% |
| !! | GACTGGTTATTAAGTTTTGA+GGG | - | chr3_2:2249207-2249226 | Msa0391010:intron | 30.0% |
| GTGTTCTTAACAACTAAGAA+AGG | - | chr3_2:2249246-2249265 | Msa0391010:intron | 30.0% | |
| TCTTAACAACTAAGAAAGGT+TGG | - | chr3_2:2249250-2249269 | Msa0391010:intron | 30.0% | |
| CTTAACAACTAAGAAAGGTT+GGG | - | chr3_2:2249251-2249270 | Msa0391010:intron | 30.0% | |
| TTAACAACTAAGAAAGGTTG+GGG | - | chr3_2:2249252-2249271 | Msa0391010:intron | 30.0% | |
| GAATCGTGCAATATTAAGAA+TGG | - | chr3_2:2249383-2249402 | Msa0391010:CDS | 30.0% | |
| AACAAATTTCCAACATCACA+CGG | + | chr3_2:2249955-2249974 | None:intergenic | 30.0% | |
| !! | CAGCTATTTCTAAAAACTGT+AGG | - | chr3_2:2250010-2250029 | Msa0391010:CDS | 30.0% |
| CTAGAACCAAAACACTATAA+AGG | + | chr3_2:2250053-2250072 | None:intergenic | 30.0% | |
| !!! | CTTTATAGTGTTTTGGTTCT+AGG | - | chr3_2:2250051-2250070 | Msa0391010:CDS | 30.0% |
| ACTCAAGATATGTTAAACAC+TGG | + | chr3_2:2250087-2250106 | None:intergenic | 30.0% | |
| ! | AATTTTCCATATCATCCAAC+AGG | + | chr3_2:2250269-2250288 | None:intergenic | 30.0% |
| TTGGATGATATGGAAAATTC+TGG | - | chr3_2:2250270-2250289 | Msa0391010:CDS | 30.0% | |
| TTGTACTGAAACAAAGTCAA+TGG | + | chr3_2:2250331-2250350 | None:intergenic | 30.0% | |
| ATTTATAACCTTGAGATGGA+AGG | + | chr3_2:2250359-2250378 | None:intergenic | 30.0% | |
| TGGAATTTATAACCTTGAGA+TGG | + | chr3_2:2250363-2250382 | None:intergenic | 30.0% | |
| ATCTCAAGGTTATAAATTCC+AGG | - | chr3_2:2250362-2250381 | Msa0391010:CDS | 30.0% | |
| !! | ATTCTATTGATTCAGATGTC+CGG | - | chr3_2:2250682-2250701 | Msa0391010:CDS | 30.0% |
| ! | AATTTTTGATGCTTCACAAG+AGG | + | chr3_2:2250736-2250755 | None:intergenic | 30.0% |
| ATTAATATAACTGTCCACTG+TGG | + | chr3_2:2250766-2250785 | None:intergenic | 30.0% | |
| ACAGTGGACAGTTATATTAA+TGG | - | chr3_2:2250765-2250784 | Msa0391010:intron | 30.0% | |
| AAAAGAAAATCAGTCAACAC+TGG | - | chr3_2:2250809-2250828 | Msa0391010:intron | 30.0% | |
| ACATCTGAATCGTTGAAATT+TGG | + | chr3_2:2251041-2251060 | None:intergenic | 30.0% | |
| ! | AAGTGATTTTGCATCCAATT+GGG | + | chr3_2:2251072-2251091 | None:intergenic | 30.0% |
| !! | TCATTTCATCAAAAGGTGTT+TGG | + | chr3_2:2251457-2251476 | None:intergenic | 30.0% |
| ! | TCCGTTTTCATTTCATCAAA+AGG | + | chr3_2:2251464-2251483 | None:intergenic | 30.0% |
| ACATTCATTTCCAGAAGTTA+TGG | - | chr3_2:2251505-2251524 | Msa0391010:intron | 30.0% | |
| ! | ATGGTGGAAGATAAAAAGTT+TGG | - | chr3_2:2251524-2251543 | Msa0391010:intron | 30.0% |
| CTTCCATCACAAGTAAATAA+CGG | - | chr3_2:2251705-2251724 | Msa0391010:intron | 30.0% | |
| TATCCGTTATTTACTTGTGA+TGG | + | chr3_2:2251711-2251730 | None:intergenic | 30.0% | |
| TGCAAGTAACAATAATAACC+TGG | + | chr3_2:2251974-2251993 | None:intergenic | 30.0% | |
| AGTTAAATCCGACTTACCTT+TGG | + | chr3_2:2248870-2248889 | None:intergenic | 35.0% | |
| AGATAGGCATATCAAGATCT+AGG | - | chr3_2:2248923-2248942 | Msa0391010:CDS | 35.0% | |
| TATATGTCTTGAAGTCTGAC+TGG | - | chr3_2:2249190-2249209 | Msa0391010:intron | 35.0% | |
| TAACAACTAAGAAAGGTTGG+GGG | - | chr3_2:2249253-2249272 | Msa0391010:intron | 35.0% | |
| AACTTATTCAAACCAGTGCT+TGG | - | chr3_2:2249457-2249476 | Msa0391010:CDS | 35.0% | |
| GAAATTGAAATCCAGGAACA+GGG | + | chr3_2:2249722-2249741 | None:intergenic | 35.0% | |
| CTAACAGGAAATTGAAATCC+AGG | + | chr3_2:2249729-2249748 | None:intergenic | 35.0% | |
| TTTCAATTTCCTGTTAGAGC+AGG | - | chr3_2:2249732-2249751 | Msa0391010:CDS | 35.0% | |
| GACAACCTTGTATGTAGTTA+CGG | - | chr3_2:2249805-2249824 | Msa0391010:CDS | 35.0% | |
| TGTAACCGTAACTACATACA+AGG | + | chr3_2:2249813-2249832 | None:intergenic | 35.0% | |
| ATCTTGAGTGACATTCTGAA+TGG | - | chr3_2:2250098-2250117 | Msa0391010:CDS | 35.0% | |
| ! | TTCTTTTAGCCAATGCTCTA+AGG | - | chr3_2:2250130-2250149 | Msa0391010:CDS | 35.0% |
| GAGAAAGCGATTTCATAAAG+AGG | - | chr3_2:2250152-2250171 | Msa0391010:CDS | 35.0% | |
| ATTCTCAAGAGTTGCTAAAG+TGG | - | chr3_2:2250214-2250233 | Msa0391010:CDS | 35.0% | |
| TTCTCAAGAGTTGCTAAAGT+GGG | - | chr3_2:2250215-2250234 | Msa0391010:CDS | 35.0% | |
| TGATATCCTGTTGGATGATA+TGG | - | chr3_2:2250260-2250279 | Msa0391010:CDS | 35.0% | |
| ! | TGATTTACATTTTCGGCAAC+AGG | + | chr3_2:2250447-2250466 | None:intergenic | 35.0% |
| AAACATCACATTGTGAGATG+TGG | - | chr3_2:2250561-2250580 | Msa0391010:CDS | 35.0% | |
| ATTTGGAAGTCCTAACTTTG+TGG | + | chr3_2:2251024-2251043 | None:intergenic | 35.0% | |
| ! | CAAGTGATTTTGCATCCAAT+TGG | + | chr3_2:2251073-2251092 | None:intergenic | 35.0% |
| TGAGGATCAACTGAAGATTT+AGG | + | chr3_2:2251167-2251186 | None:intergenic | 35.0% | |
| GAAATTTCTACACCATCCAT+AGG | - | chr3_2:2251206-2251225 | Msa0391010:intron | 35.0% | |
| GATGCATGAAAATTTGCCAA+AGG | - | chr3_2:2251307-2251326 | Msa0391010:intron | 35.0% | |
| TAAAATTGCTGAGCATACAG+TGG | - | chr3_2:2251337-2251356 | Msa0391010:intron | 35.0% | |
| ATCTACTTCTGTAACATCAG+TGG | - | chr3_2:2251373-2251392 | Msa0391010:intron | 35.0% | |
| TTCATTTCCAGAAGTTATGG+TGG | - | chr3_2:2251508-2251527 | Msa0391010:intron | 35.0% | |
| TTATCTTCCACCATAACTTC+TGG | + | chr3_2:2251518-2251537 | None:intergenic | 35.0% | |
| ! | CGTTATTTACTTGTGATGGA+AGG | + | chr3_2:2251707-2251726 | None:intergenic | 35.0% |
| TGTGCATTTGCATTATATCC+AGG | - | chr3_2:2251824-2251843 | Msa0391010:intron | 35.0% | |
| ! | CAGTTTTCTTTCCATTGAAG+CGG | - | chr3_2:2251873-2251892 | Msa0391010:intron | 35.0% |
| ATATGAAACAACCGCTTCAA+TGG | + | chr3_2:2251887-2251906 | None:intergenic | 35.0% | |
| ! | ATTGAAGCGGTTGTTTCATA+TGG | - | chr3_2:2251886-2251905 | Msa0391010:intron | 35.0% |
| !! | ATGGTGCCTTTTAAGAAGAA+AGG | - | chr3_2:2251905-2251924 | Msa0391010:intron | 35.0% |
| ! | AATTTCTTGTTTGGCAAGGC+TGG | + | chr3_2:2249039-2249058 | None:intergenic | 40.0% |
| AACAACTAAGAAAGGTTGGG+GGG | - | chr3_2:2249254-2249273 | Msa0391010:intron | 40.0% | |
| TATGGAATCCCTACTGATGA+AGG | - | chr3_2:2249300-2249319 | Msa0391010:CDS | 40.0% | |
| ATGGAATCCCTACTGATGAA+GGG | - | chr3_2:2249301-2249320 | Msa0391010:CDS | 40.0% | |
| ACCTTCCGTGTTTATAAGCA+GGG | - | chr3_2:2249340-2249359 | Msa0391010:CDS | 40.0% | |
| TGGATCCCTGCTTATAAACA+CGG | + | chr3_2:2249348-2249367 | None:intergenic | 40.0% | |
| TATAAGCAGGGATCCAGTAT+AGG | - | chr3_2:2249352-2249371 | Msa0391010:CDS | 40.0% | |
| GATTCCTAATCAGCCTATAC+TGG | + | chr3_2:2249368-2249387 | None:intergenic | 40.0% | |
| !!! | GATTTTAACTAACCAGCGCT+AGG | - | chr3_2:2249424-2249443 | Msa0391010:CDS | 40.0% |
| TAAAGAGATTCCTTGCGAAC+TGG | - | chr3_2:2249573-2249592 | Msa0391010:CDS | 40.0% | |
| AAATCCAGGAACAGGGTAAT+GGG | + | chr3_2:2249715-2249734 | None:intergenic | 40.0% | |
| GGAAATTGAAATCCAGGAAC+AGG | + | chr3_2:2249723-2249742 | None:intergenic | 40.0% | |
| TCATAGATCTTATGAGGGTC+AGG | + | chr3_2:2249781-2249800 | None:intergenic | 40.0% | |
| ! | ACATGTAGCTGTTGATTGAC+TGG | - | chr3_2:2249869-2249888 | Msa0391010:CDS | 40.0% |
| !!! | ATTTTCAAGTGCTGCTCCTT+CGG | - | chr3_2:2249912-2249931 | Msa0391010:CDS | 40.0% |
| CTTCGGTGAATGAACTTAGA+GGG | - | chr3_2:2249929-2249948 | Msa0391010:CDS | 40.0% | |
| ATTATTTGGGCTCTCCAAAG+AGG | - | chr3_2:2249978-2249997 | Msa0391010:CDS | 40.0% | |
| ! | AGCTGATTTAGCTTCCTCTT+TGG | + | chr3_2:2249995-2250014 | None:intergenic | 40.0% |
| ! | TGACATTCTGAATGGCTTGT+AGG | - | chr3_2:2250106-2250125 | Msa0391010:CDS | 40.0% |
| ! | GACATTCTGAATGGCTTGTA+GGG | - | chr3_2:2250107-2250126 | Msa0391010:CDS | 40.0% |
| AGTCTTTGATGCTTTACAGG+AGG | + | chr3_2:2250301-2250320 | None:intergenic | 40.0% | |
| TGCAGTCTTTGATGCTTTAC+AGG | + | chr3_2:2250304-2250323 | None:intergenic | 40.0% | |
| CATTTGCAGGTAAGAAATCC+TGG | + | chr3_2:2250383-2250402 | None:intergenic | 40.0% | |
| !! | ATAGAGAGAGTGTCATTTGC+AGG | + | chr3_2:2250396-2250415 | None:intergenic | 40.0% |
| ! | TCAGTTAAGTTGTTGGGTAC+AGG | + | chr3_2:2250477-2250496 | None:intergenic | 40.0% |
| GATGATCTATCGTCTTGCTT+TGG | + | chr3_2:2250525-2250544 | None:intergenic | 40.0% | |
| GCAAGACGATAGATCATCAT+TGG | - | chr3_2:2250527-2250546 | Msa0391010:CDS | 40.0% | |
| GACGATAGATCATCATTGGA+TGG | - | chr3_2:2250531-2250550 | Msa0391010:CDS | 40.0% | |
| TCTGAGAAAAACGTACACAG+CGG | - | chr3_2:2250591-2250610 | Msa0391010:CDS | 40.0% | |
| GAGATAGACACTGAGACAAA+TGG | - | chr3_2:2250639-2250658 | Msa0391010:CDS | 40.0% | |
| !! | TATTGATTCAGATGTCCGGA+TGG | - | chr3_2:2250686-2250705 | Msa0391010:CDS | 40.0% |
| AAAAATTGCGAAAGCCACAG+TGG | - | chr3_2:2250749-2250768 | Msa0391010:intron | 40.0% | |
| ! | GACTGCTTGGTTAAGTTGTT+AGG | + | chr3_2:2250837-2250856 | None:intergenic | 40.0% |
| TTTCTCTTGCGCAAGATGAA+AGG | - | chr3_2:2250871-2250890 | Msa0391010:CDS | 40.0% | |
| CTGACAAATGCCACAAAGTT+AGG | - | chr3_2:2251011-2251030 | Msa0391010:intron | 40.0% | |
| ! | AGATGTTGATTGCACCCAAT+TGG | - | chr3_2:2251055-2251074 | Msa0391010:intron | 40.0% |
| GTGCATCTCAAGTAATGTGT+TGG | - | chr3_2:2251109-2251128 | Msa0391010:intron | 40.0% | |
| !!! | ATCCATAGGCGTCATTTTTC+CGG | - | chr3_2:2251220-2251239 | Msa0391010:intron | 40.0% |
| TACTTCTGTAACATCAGTGG+AGG | - | chr3_2:2251376-2251395 | Msa0391010:intron | 40.0% | |
| ACTTCAACTGCATCAGTTTC+TGG | + | chr3_2:2251419-2251438 | None:intergenic | 40.0% | |
| !! | TCATCAAAAGGTGTTTGGTC+AGG | + | chr3_2:2251452-2251471 | None:intergenic | 40.0% |
| CGCTTCAATGGAAAGAAAAC+TGG | + | chr3_2:2251875-2251894 | None:intergenic | 40.0% | |
| TGGAATCCCTACTGATGAAG+GGG | - | chr3_2:2249302-2249321 | Msa0391010:CDS | 45.0% | |
| CACCTTCCGTGTTTATAAGC+AGG | - | chr3_2:2249339-2249358 | Msa0391010:CDS | 45.0% | |
| TCCCTGCTTATAAACACGGA+AGG | + | chr3_2:2249344-2249363 | None:intergenic | 45.0% | |
| GGATCCAGTATAGGCTGATT+AGG | - | chr3_2:2249361-2249380 | Msa0391010:CDS | 45.0% | |
| CTGTTAGCATGCATGACCAT+GGG | - | chr3_2:2249547-2249566 | Msa0391010:CDS | 45.0% | |
| TGTTAGCATGCATGACCATG+GGG | - | chr3_2:2249548-2249567 | Msa0391010:CDS | 45.0% | |
| ! | TTGATTCGTTCCAGTTCGCA+AGG | + | chr3_2:2249586-2249605 | None:intergenic | 45.0% |
| GAAATCCAGGAACAGGGTAA+TGG | + | chr3_2:2249716-2249735 | None:intergenic | 45.0% | |
| AGATGAGATCCTGCTCTAAC+AGG | + | chr3_2:2249744-2249763 | None:intergenic | 45.0% | |
| TAGATCTTATGAGGGTCAGG+AGG | + | chr3_2:2249778-2249797 | None:intergenic | 45.0% | |
| CCTCTAAGTTCATTCACCGA+AGG | + | chr3_2:2249931-2249950 | None:intergenic | 45.0% | |
| CCTTCGGTGAATGAACTTAG+AGG | - | chr3_2:2249928-2249947 | Msa0391010:CDS | 45.0% | |
| !!! | TTTTGGTTCTAGGGACCACT+GGG | - | chr3_2:2250061-2250080 | Msa0391010:CDS | 45.0% |
| TATGTTAAACACTGGCCCAG+TGG | + | chr3_2:2250079-2250098 | None:intergenic | 45.0% | |
| TCGCTTTCTCCTTAGAGCAT+TGG | + | chr3_2:2250142-2250161 | None:intergenic | 45.0% | |
| ! | GGCTGCTCAGTTAAGTTGTT+GGG | + | chr3_2:2250483-2250502 | None:intergenic | 45.0% |
| GGACAAACATCAGTCCTGTT+GGG | + | chr3_2:2250504-2250523 | None:intergenic | 45.0% | |
| TGGACAAACATCAGTCCTGT+TGG | + | chr3_2:2250505-2250524 | None:intergenic | 45.0% | |
| TGAGACAAATGGTGCGAAGT+TGG | - | chr3_2:2250650-2250669 | Msa0391010:CDS | 45.0% | |
| ! | ACTTTTCTACGTCGTCCATC+CGG | + | chr3_2:2250704-2250723 | None:intergenic | 45.0% |
| AAGAGAAATGTGGAGCCTGT+CGG | + | chr3_2:2250859-2250878 | None:intergenic | 45.0% | |
| CATCTTGCGCAAGAGAAATG+TGG | + | chr3_2:2250869-2250888 | None:intergenic | 45.0% | |
| !!! | GGCTGTTTTTCGTTCTCATG+TGG | + | chr3_2:2251146-2251165 | None:intergenic | 45.0% |
| GGAAAAATGACGCCTATGGA+TGG | + | chr3_2:2251221-2251240 | None:intergenic | 45.0% | |
| TGCTTTGCATGTTCTGTAGC+CGG | + | chr3_2:2251242-2251261 | None:intergenic | 45.0% | |
| AATTGCTGAGCATACAGTGG+TGG | - | chr3_2:2251340-2251359 | Msa0391010:intron | 45.0% | |
| TCTGTAACATCAGTGGAGGA+TGG | - | chr3_2:2251380-2251399 | Msa0391010:intron | 45.0% | |
| ! | AACTACATGGACTGCTGAGA+GGG | + | chr3_2:2251669-2251688 | None:intergenic | 45.0% |
| ! | AAACTACATGGACTGCTGAG+AGG | + | chr3_2:2251670-2251689 | None:intergenic | 45.0% |
| GCACATCCCCTTCATCAGTA+GGG | + | chr3_2:2249311-2249330 | None:intergenic | 50.0% | |
| TTGCATATAGAGCCTAGCGC+TGG | + | chr3_2:2249439-2249458 | None:intergenic | 50.0% | |
| TTGCATACAGAGCCAAGCAC+TGG | + | chr3_2:2249472-2249491 | None:intergenic | 50.0% | |
| GCTGTTAGCATGCATGACCA+TGG | - | chr3_2:2249546-2249565 | Msa0391010:CDS | 50.0% | |
| GTTAGCATGCATGACCATGG+GGG | - | chr3_2:2249549-2249568 | Msa0391010:CDS | 50.0% | |
| TTAGCATGCATGACCATGGG+GGG | - | chr3_2:2249550-2249569 | Msa0391010:CDS | 50.0% | |
| AGGAATCTCTTTACCCCCCA+TGG | + | chr3_2:2249566-2249585 | None:intergenic | 50.0% | |
| TGTTCCCATTACCCTGTTCC+TGG | - | chr3_2:2249708-2249727 | Msa0391010:CDS | 50.0% | |
| ATGAGGGTCAGGAGGTCTAA+TGG | + | chr3_2:2249770-2249789 | None:intergenic | 50.0% | |
| ! | CTGTTGATTGACTGGACTCG+TGG | - | chr3_2:2249877-2249896 | Msa0391010:CDS | 50.0% |
| !!! | GTTTTGGTTCTAGGGACCAC+TGG | - | chr3_2:2250060-2250079 | Msa0391010:CDS | 50.0% |
| TGGGGAAGGTGATATCCTGT+TGG | - | chr3_2:2250251-2250270 | Msa0391010:CDS | 50.0% | |
| CAAGACAGCCTTCCATCTCA+AGG | - | chr3_2:2250348-2250367 | Msa0391010:CDS | 50.0% | |
| ! | GGGCTGCTCAGTTAAGTTGT+TGG | + | chr3_2:2250484-2250503 | None:intergenic | 50.0% |
| ACTTAACTGAGCAGCCCAAC+AGG | - | chr3_2:2250487-2250506 | Msa0391010:CDS | 50.0% | |
| ACTTAACCAAGCAGTCCGAC+AGG | - | chr3_2:2250841-2250860 | Msa0391010:CDS | 50.0% | |
| AGCCGGAAAAATGACGCCTA+TGG | + | chr3_2:2251225-2251244 | None:intergenic | 50.0% | |
| ACCTGAGACAGACTGAACAG+AGG | + | chr3_2:2251579-2251598 | None:intergenic | 50.0% | |
| ! | ATGGACTGCTGAGAGGGAAA+TGG | + | chr3_2:2251663-2251682 | None:intergenic | 50.0% |
| GTAGACGATGTGCGCTTGTA+GGG | + | chr3_2:2251762-2251781 | None:intergenic | 50.0% | |
| AGTAGACGATGTGCGCTTGT+AGG | + | chr3_2:2251763-2251782 | None:intergenic | 50.0% | |
| ATCCAGGTCGATTGCGAGTT+AGG | - | chr3_2:2251840-2251859 | Msa0391010:intron | 50.0% | |
| CGCACATCCCCTTCATCAGT+AGG | + | chr3_2:2249312-2249331 | None:intergenic | 55.0% | |
| ACTGATGAAGGGGATGTGCG+CGG | - | chr3_2:2249312-2249331 | Msa0391010:CDS | 55.0% | |
| CTTAGAGGGCCGTGTGATGT+TGG | - | chr3_2:2249943-2249962 | Msa0391010:CDS | 55.0% | |
| CAGGATATCACCTTCCCCAC+TGG | + | chr3_2:2250250-2250269 | None:intergenic | 55.0% | |
| GCCTCTGTTCAGTCTGTCTC+AGG | - | chr3_2:2251575-2251594 | Msa0391010:intron | 55.0% | |
| CTGATGAAGGGGATGTGCGC+GGG | - | chr3_2:2249313-2249332 | Msa0391010:CDS | 60.0% | |
| AAGTGGGACCCTCTCTCCAG+TGG | - | chr3_2:2250231-2250250 | Msa0391010:CDS | 60.0% | |
| AGTGGGACCCTCTCTCCAGT+GGG | - | chr3_2:2250232-2250251 | Msa0391010:CDS | 60.0% | |
| CACCTTCCCCACTGGAGAGA+GGG | + | chr3_2:2250242-2250261 | None:intergenic | 60.0% | |
| TCACCTTCCCCACTGGAGAG+AGG | + | chr3_2:2250243-2250262 | None:intergenic | 60.0% | |
| CGCCTAACTCGCAATCGACC+TGG | + | chr3_2:2251845-2251864 | None:intergenic | 60.0% | |
| GTGGGACCCTCTCTCCAGTG+GGG | - | chr3_2:2250233-2250252 | Msa0391010:CDS | 65.0% | |
| GACCCTCTCTCCAGTGGGGA+AGG | - | chr3_2:2250237-2250256 | Msa0391010:CDS | 65.0% | |
| GTGGAGCCTGTCGGACTGCT+TGG | + | chr3_2:2250850-2250869 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 2248864 | 2251999 | 2248864 | ID=Msa0391010;Name=Msa0391010 |
| chr3_2 | mRNA | 2248864 | 2251999 | 2248864 | ID=Msa0391010-mRNA-1;Parent=Msa0391010;Name=Msa0391010-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.66|0.25|0.75|1|1|4|41|581 |
| chr3_2 | exon | 2248864 | 2249017 | 2248864 | ID=Msa0391010-mRNA-1:exon:722;Parent=Msa0391010-mRNA-1 |
| chr3_2 | exon | 2249267 | 2250735 | 2249267 | ID=Msa0391010-mRNA-1:exon:721;Parent=Msa0391010-mRNA-1 |
| chr3_2 | exon | 2250832 | 2250986 | 2250832 | ID=Msa0391010-mRNA-1:exon:720;Parent=Msa0391010-mRNA-1 |
| chr3_2 | exon | 2251991 | 2251999 | 2251991 | ID=Msa0391010-mRNA-1:exon:719;Parent=Msa0391010-mRNA-1 |
| chr3_2 | CDS | 2251991 | 2251999 | 2251991 | ID=Msa0391010-mRNA-1:cds;Parent=Msa0391010-mRNA-1 |
| chr3_2 | CDS | 2250832 | 2250986 | 2250832 | ID=Msa0391010-mRNA-1:cds;Parent=Msa0391010-mRNA-1 |
| chr3_2 | CDS | 2249267 | 2250735 | 2249267 | ID=Msa0391010-mRNA-1:cds;Parent=Msa0391010-mRNA-1 |
| chr3_2 | CDS | 2248905 | 2249017 | 2248905 | ID=Msa0391010-mRNA-1:cds;Parent=Msa0391010-mRNA-1 |
| chr3_2 | three_prime_UTR | 2248864 | 2248904 | 2248864 | ID=Msa0391010-mRNA-1:three_prime_utr;Parent=Msa0391010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
