AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0223640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223640 MtrunA17_Chr2g0329271 95.137 329 16 0 1 329 1 329 0.0 629
Msa0223640 MtrunA17_Chr4g0033431 58.739 349 106 4 17 327 58 406 9.00e-135 389
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223640 AT1G05900.2 69.130 230 67 1 87 312 141 370 3.89e-118 346
Msa0223640 AT2G31450.2 57.432 296 101 4 42 312 66 361 5.54e-114 335
Msa0223640 AT2G31450.1 57.432 296 101 4 42 312 68 363 6.74e-114 335
Msa0223640 AT1G05900.1 68.421 171 50 1 87 253 141 311 2.45e-81 249

Find 85 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTATTTCCTTAAGTTAC+TGG 0.129112 2_1:-73249092 Msa0223640:three_prime_UTR
CATACCAAAAGATAATTTAT+TGG 0.207423 2_1:+73249685 None:intergenic
CTTGTTCAAGCGAGACTTAT+TGG 0.231032 2_1:+73249337 None:intergenic
ACCTTGGTGTGGATTGGTTT+TGG 0.284053 2_1:+73252746 None:intergenic
CAGCGCCTTTCTAGTTTCTT+CGG 0.287332 2_1:+73249738 None:intergenic
TATATGCATAGCTAAGAATT+TGG 0.290959 2_1:-73249274 Msa0223640:three_prime_UTR
GAAATTGAACAGGTAGGATT+TGG 0.294623 2_1:-73249461 Msa0223640:intron
TACTTATGTTTCTGTTTGTT+TGG 0.298785 2_1:-73252817 Msa0223640:CDS
GGTTCCAATAAATTATCTTT+TGG 0.302688 2_1:-73249689 Msa0223640:intron
TTATGTCAATACTAAATATC+AGG 0.312471 2_1:-73249063 None:intergenic
ATTTGCAGCAAGTGCTTCTT+TGG 0.316813 2_1:+73252594 None:intergenic
ACTCAACGTCTTCGTCAAAA+TGG 0.325296 2_1:-73250709 Msa0223640:CDS
CAAACAGAAACATAAGTAAA+AGG 0.334417 2_1:+73252822 None:intergenic
GGACAATATGTACTCCTTTA+CGG 0.370840 2_1:-73249436 Msa0223640:CDS
CAGTAACTTAAGGAAATAGA+AGG 0.377973 2_1:+73249093 None:intergenic
CATACCAAATGAGCAATCTT+AGG 0.378540 2_1:+73250306 None:intergenic
GTTCTGCCCGTCAGCGTTCA+AGG 0.388403 2_1:-73249384 Msa0223640:CDS
GAGGAACTACTCTCACTTCC+AGG 0.389018 2_1:-73250336 Msa0223640:CDS
GAGTAACATGCTCCTTAGTT+TGG 0.393553 2_1:+73251540 None:intergenic
CTACCTACCTTGGTGTGGAT+TGG 0.393734 2_1:+73252740 None:intergenic
ATACACAGGAACAAATGAAT+TGG 0.394847 2_1:-73252397 Msa0223640:CDS
AGACTTCAAGTTCATCTTCC+AGG 0.395330 2_1:-73249361 Msa0223640:CDS
AGCGCCTTTCTAGTTTCTTC+GGG 0.398885 2_1:+73249739 None:intergenic
AGGTCCTAAGATTGCTCATT+TGG 0.400492 2_1:-73250310 Msa0223640:intron
AGTAGTTCCTCAATTGAGTT+AGG 0.401343 2_1:+73250348 None:intergenic
TTCTATTTCCTTAAGTTACT+GGG 0.406891 2_1:-73249091 Msa0223640:three_prime_UTR
TACTACACAGAAGTTTGGTT+TGG 0.413142 2_1:-73252439 Msa0223640:intron
TTTGAGACCTGGCACAAAAC+AGG 0.420938 2_1:-73250091 Msa0223640:intron
TAGATGAAAGTCCTGCCAAT+TGG 0.428361 2_1:-73252272 Msa0223640:CDS
AAGCACTTGCTGCAAATTCA+AGG 0.437898 2_1:-73252588 Msa0223640:CDS
CGCTGGAACGGTGGCTTCCG+AGG 0.442006 2_1:-73249720 Msa0223640:CDS
GGTGGCTTCCGAGGGAAGAA+TGG 0.447991 2_1:-73249711 Msa0223640:CDS
TAACAAAACCCAGTAACTTA+AGG 0.449662 2_1:+73249083 None:intergenic
CACCGCATCTGCAATCGTCT+TGG 0.460837 2_1:-73250120 Msa0223640:CDS
GCATCTGCAATCGTCTTGGA+TGG 0.472657 2_1:-73250116 Msa0223640:CDS
TTGGCTGAGATTGAAGGATC+TGG 0.476620 2_1:-73252420 Msa0223640:CDS
AGATGAAAGTCCTGCCAATT+GGG 0.477356 2_1:-73252271 Msa0223640:CDS
ATTTGTCTCACAAAGTATGA+TGG 0.477375 2_1:-73250378 Msa0223640:CDS
TTTGGTTTGGCTGAGATTGA+AGG 0.478944 2_1:-73252426 Msa0223640:CDS
ATTGGGAAAACGTGCTTGAA+GGG 0.480580 2_1:-73252254 Msa0223640:CDS
AATTGGGAAAACGTGCTTGA+AGG 0.485015 2_1:-73252255 Msa0223640:CDS
AAAACATGTTGGTCTTGTAA+TGG 0.489092 2_1:+73252773 None:intergenic
GGACAGAAGATTTGCTGTCC+TGG 0.497504 2_1:-73251582 Msa0223640:CDS
TCTCCACAGCGAGGCCGTAA+AGG 0.504382 2_1:+73249422 None:intergenic
AAGTCTCCTTGAACGCTGAC+GGG 0.508315 2_1:+73249378 None:intergenic
TACACAGGAACAAATGAATT+GGG 0.509574 2_1:-73252396 Msa0223640:CDS
ATTGGAACCCATTCTTCCCT+CGG 0.515483 2_1:+73249703 None:intergenic
CAAGCGAGACTTATTGGACC+TGG 0.518486 2_1:+73249343 None:intergenic
GAAGTCTCCTTGAACGCTGA+CGG 0.520597 2_1:+73249377 None:intergenic
TCGATAAAAGAGAAGATGCC+AGG 0.527820 2_1:+73251564 None:intergenic
TTTGTCTCACAAAGTATGAT+GGG 0.527881 2_1:-73250377 Msa0223640:CDS
CGAAGAAACTAGAAAGGCGC+TGG 0.533567 2_1:-73249737 Msa0223640:CDS
GTGGCTTCCGAGGGAAGAAT+GGG 0.536497 2_1:-73249710 Msa0223640:CDS
GATAGACACTACAGGTGATC+GGG 0.536871 2_1:-73252211 Msa0223640:CDS
ATATAGATTTAGACCTTAGG+AGG 0.539457 2_1:+73252171 None:intergenic
TGTTGATATTCATCCTCCTA+AGG 0.549271 2_1:-73252184 Msa0223640:intron
ATCCAAGACGATTGCAGATG+CGG 0.553059 2_1:+73250118 None:intergenic
CGATAGACACTACAGGTGAT+CGG 0.557021 2_1:-73252212 Msa0223640:CDS
CATCTGCAATCGTCTTGGAT+GGG 0.565079 2_1:-73250115 Msa0223640:CDS
GCTGGAACGGTGGCTTCCGA+GGG 0.566400 2_1:-73249719 Msa0223640:CDS
CTAGAAAGGCGCTGGAACGG+TGG 0.575424 2_1:-73249729 Msa0223640:CDS
TAAGTCTCGCTTGAACAAGA+AGG 0.575922 2_1:-73249333 Msa0223640:CDS
GCAATCTTAGGACCTACGCC+TGG 0.583177 2_1:+73250318 None:intergenic
TTGAACAGGTAGGATTTGGA+AGG 0.583390 2_1:-73249457 Msa0223640:intron
AATACCCGAAGAAACTAGAA+AGG 0.587513 2_1:-73249743 Msa0223640:CDS
ATTGAAGGATCTGGATACAC+AGG 0.592185 2_1:-73252411 Msa0223640:CDS
AAACTAGAAAGGCGCTGGAA+CGG 0.595096 2_1:-73249732 Msa0223640:CDS
GAGTATCTACACATATCCCT+TGG 0.595774 2_1:+73250148 None:intergenic
ATTGCATGGAACAATGTCCA+AGG 0.598895 2_1:-73250165 Msa0223640:CDS
GGACATACCTAACTCAATTG+AGG 0.599951 2_1:-73250355 Msa0223640:CDS
ATGTATTCGATAGACACTAC+AGG 0.611197 2_1:-73252219 Msa0223640:CDS
AGTAGCTACCTACCTTGGTG+TGG 0.611329 2_1:+73252735 None:intergenic
CGGCCTCGCTGTGGAGAGTG+TGG 0.612820 2_1:-73249416 Msa0223640:CDS
AGTAACTTAAGGAAATAGAA+GGG 0.623714 2_1:+73249094 None:intergenic
CTACTCTCACTTCCAGGCGT+AGG 0.628816 2_1:-73250330 Msa0223640:CDS
CAAGACGATTGCAGATGCGG+TGG 0.636787 2_1:+73250121 None:intergenic
ACTCCTTTACGGCCTCGCTG+TGG 0.644606 2_1:-73249425 Msa0223640:CDS
TTGCATGGAACAATGTCCAA+GGG 0.650900 2_1:-73250164 Msa0223640:CDS
CATCATCACTAGATAGACAC+GGG 0.660817 2_1:+73249214 None:intergenic
TTGTCTCACAAAGTATGATG+GGG 0.673272 2_1:-73250376 Msa0223640:CDS
ACATCATCACTAGATAGACA+CGG 0.680360 2_1:+73249213 None:intergenic
TGTAGGTTATGATTATTGCA+TGG 0.685626 2_1:-73250179 Msa0223640:intron
TCCAAAACCAATCCACACCA+AGG 0.688155 2_1:-73252747 Msa0223640:intron
ACTAAGGAGCATGTTACTCG+CGG 0.708659 2_1:-73251536 Msa0223640:intron
ACACCACACTCTCCACAGCG+AGG 0.741119 2_1:+73249413 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAATCAAAATAAAATAA+TGG + chr2_1:73250254-73250273 None:intergenic 10.0%
!!! TAAATTTTATGCATATAATT+AGG - chr2_1:73250320-73250339 Msa0223640:CDS 10.0%
!! TAGTATAAAAAAATAAAAAC+TGG + chr2_1:73252094-73252113 None:intergenic 10.0%
!! AATGAATGAAAGAAAATTTA+AGG + chr2_1:73249252-73249271 None:intergenic 15.0%
!!! TCAATTTTCATACAAAAATT+TGG - chr2_1:73249404-73249423 Msa0223640:CDS 15.0%
!!! CAATTTTCATACAAAAATTT+GGG - chr2_1:73249405-73249424 Msa0223640:CDS 15.0%
!! ATAAATTATATTGCAATACA+TGG + chr2_1:73249453-73249472 None:intergenic 15.0%
!!! TATAAAGTTAAGTTATTTCT+TGG - chr2_1:73249848-73249867 Msa0223640:intron 15.0%
!! TCAATTAATAAAACACAAAA+AGG + chr2_1:73251440-73251459 None:intergenic 15.0%
!!! AATATATATGCTTATACTTT+TGG - chr2_1:73251459-73251478 Msa0223640:intron 15.0%
!!! ATATATATGCTTATACTTTT+GGG - chr2_1:73251460-73251479 Msa0223640:intron 15.0%
!! ATTACTATATAAGATTATCA+AGG - chr2_1:73251915-73251934 Msa0223640:intron 15.0%
!! TGAAAGAAAATTTAAGGAAA+AGG + chr2_1:73249246-73249265 None:intergenic 20.0%
!! AATTGCTTAGATTAGAAAAA+GGG + chr2_1:73249384-73249403 None:intergenic 20.0%
!! AAATTGCTTAGATTAGAAAA+AGG + chr2_1:73249385-73249404 None:intergenic 20.0%
!!! ATTTATATTGATTTCATGTG+TGG - chr2_1:73249778-73249797 Msa0223640:intron 20.0%
!! ATACAATGATACATAATGAT+GGG - chr2_1:73249895-73249914 Msa0223640:intron 20.0%
!! TTCATAAATTACCAAAACAA+TGG + chr2_1:73249932-73249951 None:intergenic 20.0%
!! AATAGTTAGAAACCTTTAAT+AGG - chr2_1:73250185-73250204 Msa0223640:intron 20.0%
!!! TTATATTAGCTATTGACTAT+TGG - chr2_1:73250227-73250246 Msa0223640:intron 20.0%
!!! TATATTAGCTATTGACTATT+GGG - chr2_1:73250228-73250247 Msa0223640:intron 20.0%
!! GGATACAATATAATAAAACA+TGG + chr2_1:73250830-73250849 None:intergenic 20.0%
!! TCTTGTATGATCAATTAATT+TGG - chr2_1:73251334-73251353 Msa0223640:intron 20.0%
!!! ATGATCAATTAATTTGGATT+TGG - chr2_1:73251340-73251359 Msa0223640:intron 20.0%
!! CTTAAAACTAATGAAACAAA+CGG + chr2_1:73251668-73251687 None:intergenic 20.0%
!! ATGTATATGTTACAACATAT+TGG - chr2_1:73251955-73251974 Msa0223640:intron 20.0%
!! TGTATATGTTACAACATATT+GGG - chr2_1:73251956-73251975 Msa0223640:intron 20.0%
!! CATACCAAAAGATAATTTAT+TGG + chr2_1:73252241-73252260 None:intergenic 20.0%
!! TATATACACTATATAGTCAA+AGG + chr2_1:73252280-73252299 None:intergenic 20.0%
!! TATCCAAAATATAACCATTT+AGG + chr2_1:73252334-73252353 None:intergenic 20.0%
!!! AAATGGTTATATTTTGGATA+TGG - chr2_1:73252334-73252353 Msa0223640:intron 20.0%
!!! GATGTATATATTTTGAAGAA+AGG - chr2_1:73252728-73252747 Msa0223640:intron 20.0%
!!! AAACATTTTTGGAAATTGTC+GGG + chr2_1:73249075-73249094 None:intergenic 25.0%
!!! CAAACATTTTTGGAAATTGT+CGG + chr2_1:73249076-73249095 None:intergenic 25.0%
!! AAAGGAAACACAAACATTTT+TGG + chr2_1:73249086-73249105 None:intergenic 25.0%
! CAAACAGAAACATAAGTAAA+AGG + chr2_1:73249104-73249123 None:intergenic 25.0%
!! TACTTATGTTTCTGTTTGTT+TGG - chr2_1:73249106-73249125 Msa0223640:three_prime_UTR 25.0%
!!! TCAAATAAAGTCTCACTTTT+TGG + chr2_1:73249361-73249380 None:intergenic 25.0%
!! AATTTTACTACACAGAAGTT+TGG - chr2_1:73249479-73249498 Msa0223640:intron 25.0%
!! TTGCATGAAATGTATAGTTT+TGG - chr2_1:73249569-73249588 Msa0223640:intron 25.0%
!! TGCATGAAATGTATAGTTTT+GGG - chr2_1:73249570-73249589 Msa0223640:intron 25.0%
!!! TATGGAAGTGTTTTTAGTTT+AGG - chr2_1:73249605-73249624 Msa0223640:intron 25.0%
!!! ATGGAAGTGTTTTTAGTTTA+GGG - chr2_1:73249606-73249625 Msa0223640:intron 25.0%
! AGAATATAGATTTAGACCTT+AGG + chr2_1:73249758-73249777 None:intergenic 25.0%
! GATACAATGATACATAATGA+TGG - chr2_1:73249894-73249913 Msa0223640:intron 25.0%
!! TGAAGATAATTTTCGTTGTT+TGG - chr2_1:73249956-73249975 Msa0223640:intron 25.0%
! ATAACAATCCAACCTATTAA+AGG + chr2_1:73250200-73250219 None:intergenic 25.0%
!! TTAATAGGTTGGATTGTTAT+TGG - chr2_1:73250200-73250219 Msa0223640:intron 25.0%
! CATTTACATTCTCAAGTTTA+TGG - chr2_1:73250416-73250435 Msa0223640:CDS 25.0%
! AATAATGAGATCTCAAACTT+AGG + chr2_1:73250638-73250657 None:intergenic 25.0%
! ATGTTCAGAAAAAGTTTGAA+TGG + chr2_1:73250851-73250870 None:intergenic 25.0%
! AATTGATCATACAAGAAACA+CGG + chr2_1:73251330-73251349 None:intergenic 25.0%
!! ATCAATTAATTTGGATTTGG+TGG - chr2_1:73251343-73251362 Msa0223640:intron 25.0%
!! TTTAAGCTCCATTTTGTTAA+TGG - chr2_1:73251682-73251701 Msa0223640:intron 25.0%
! AACTAACACCATTAACAAAA+TGG + chr2_1:73251693-73251712 None:intergenic 25.0%
!!! AAACAGGTTTGTTTTAAGTT+TGG - chr2_1:73251848-73251867 Msa0223640:intron 25.0%
!! AAAGAATTTTGCTCTTTGAT+TGG - chr2_1:73252068-73252087 Msa0223640:intron 25.0%
!! GGTTCCAATAAATTATCTTT+TGG - chr2_1:73252234-73252253 Msa0223640:CDS 25.0%
! ACTTGAATATGAAATTGAAC+AGG - chr2_1:73252452-73252471 Msa0223640:intron 25.0%
! TATATGCATAGCTAAGAATT+TGG - chr2_1:73252649-73252668 Msa0223640:intron 25.0%
! AGTAACTTAAGGAAATAGAA+GGG + chr2_1:73252832-73252851 None:intergenic 25.0%
! TTCTATTTCCTTAAGTTACT+GGG - chr2_1:73252832-73252851 Msa0223640:CDS 25.0%
!! AACATTTTTGGAAATTGTCG+GGG + chr2_1:73249074-73249093 None:intergenic 30.0%
!! AAAACATGTTGGTCTTGTAA+TGG + chr2_1:73249153-73249172 None:intergenic 30.0%
ATACACAGGAACAAATGAAT+TGG - chr2_1:73249526-73249545 Msa0223640:intron 30.0%
TACACAGGAACAAATGAATT+GGG - chr2_1:73249527-73249546 Msa0223640:intron 30.0%
!! TTTGGGTTGATTCTATTCTA+TGG - chr2_1:73249587-73249606 Msa0223640:intron 30.0%
ATATAGATTTAGACCTTAGG+AGG + chr2_1:73249755-73249774 None:intergenic 30.0%
! GAAATTAAGCACTAACCTTT+TGG - chr2_1:73249806-73249825 Msa0223640:intron 30.0%
CATTAAAGACATAAGCCAAA+AGG + chr2_1:73249824-73249843 None:intergenic 30.0%
TTGGACAGTTAAATTGTGTT+TGG - chr2_1:73249867-73249886 Msa0223640:intron 30.0%
CAGTTAAATTGTGTTTGGAT+TGG - chr2_1:73249872-73249891 Msa0223640:intron 30.0%
! TGAATGAGATACCATTGTTT+TGG - chr2_1:73249918-73249937 Msa0223640:intron 30.0%
TGTTTGGTAAGTGAACAAAA+TGG - chr2_1:73249972-73249991 Msa0223640:intron 30.0%
CTTATCATTTACTAATCTCC+TGG + chr2_1:73249998-73250017 None:intergenic 30.0%
ATTAGGGATATGAGATGAAA+TGG + chr2_1:73250027-73250046 None:intergenic 30.0%
!! CTATTTTTCCTCCTCAATTA+GGG + chr2_1:73250043-73250062 None:intergenic 30.0%
!! TCTATTTTTCCTCCTCAATT+AGG + chr2_1:73250044-73250063 None:intergenic 30.0%
TAATTGAGGAGGAAAAATAG+AGG - chr2_1:73250043-73250062 Msa0223640:intron 30.0%
AGAATGGAATAAACAGACAT+TGG + chr2_1:73250087-73250106 None:intergenic 30.0%
! TATTGATTGATGGAACAGAA+TGG + chr2_1:73250103-73250122 None:intergenic 30.0%
GTTAGAAACCTTTAATAGGT+TGG - chr2_1:73250189-73250208 Msa0223640:intron 30.0%
CAGTAAAGTTATCCACATTA+AGG + chr2_1:73250289-73250308 None:intergenic 30.0%
CTAGATGAGAATCAACTAAA+TGG + chr2_1:73250567-73250586 None:intergenic 30.0%
! TTTAGTTGATTCTCATCTAG+TGG - chr2_1:73250567-73250586 Msa0223640:intron 30.0%
TCTTCTTGTATATGTAGTAG+AGG - chr2_1:73250604-73250623 Msa0223640:intron 30.0%
CTTCTTGTATATGTAGTAGA+GGG - chr2_1:73250605-73250624 Msa0223640:intron 30.0%
TTCTTGTATATGTAGTAGAG+GGG - chr2_1:73250606-73250625 Msa0223640:intron 30.0%
ATCATTTGCATTCAACTTCA+TGG + chr2_1:73250743-73250762 None:intergenic 30.0%
TGAAGTTGAATGCAAATGAT+TGG - chr2_1:73250743-73250762 Msa0223640:intron 30.0%
ATGATTGGACTAAGATTTAG+AGG - chr2_1:73250758-73250777 Msa0223640:intron 30.0%
AAGTGTAAGTAAGAGATGTT+TGG - chr2_1:73250876-73250895 Msa0223640:intron 30.0%
AGTGTAAGTAAGAGATGTTT+GGG - chr2_1:73250877-73250896 Msa0223640:intron 30.0%
!!! CTGAAACTTTTAGAACATTC+TGG - chr2_1:73250906-73250925 Msa0223640:intron 30.0%
TCACATAAAAAGACAGATGA+CGG + chr2_1:73251125-73251144 None:intergenic 30.0%
!!! GAGTGTGTTTTTTCAAGAAT+AGG - chr2_1:73251187-73251206 Msa0223640:intron 30.0%
CTAACATCTTATAGAAATGC+TGG + chr2_1:73251397-73251416 None:intergenic 30.0%
!! GGGTTTTATATAAGAAAAGC+TGG - chr2_1:73251500-73251519 Msa0223640:intron 30.0%
ATTTGTCTCACAAAGTATGA+TGG - chr2_1:73251545-73251564 Msa0223640:CDS 30.0%
TTTGTCTCACAAAGTATGAT+GGG - chr2_1:73251546-73251565 Msa0223640:CDS 30.0%
!! TCCTGAAATCATTTTGTTTG+TGG - chr2_1:73251718-73251737 Msa0223640:intron 30.0%
ACCACAAACAAAATGATTTC+AGG + chr2_1:73251722-73251741 None:intergenic 30.0%
TGTAGGTTATGATTATTGCA+TGG - chr2_1:73251744-73251763 Msa0223640:intron 30.0%
TAGCATCACATTATATTTGC+TGG - chr2_1:73251871-73251890 Msa0223640:intron 30.0%
! ACATTATATTTGCTGGCTAA+AGG - chr2_1:73251878-73251897 Msa0223640:intron 30.0%
! CATTATATTTGCTGGCTAAA+GGG - chr2_1:73251879-73251898 Msa0223640:intron 30.0%
ATTATCAAGGCTGTTGTTAT+GGG - chr2_1:73251928-73251947 Msa0223640:intron 30.0%
TAACTTCGAATTTGTGAACT+TGG + chr2_1:73252125-73252144 None:intergenic 30.0%
! GCACCTAAATGGTTATATTT+TGG - chr2_1:73252328-73252347 Msa0223640:intron 30.0%
!! TGGTTATATTTTGGATATGG+TGG - chr2_1:73252337-73252356 Msa0223640:intron 30.0%
!! GGTTATATTTTGGATATGGT+GGG - chr2_1:73252338-73252357 Msa0223640:intron 30.0%
CAATTTCATATTCAAGTCAG+AGG + chr2_1:73252449-73252468 None:intergenic 30.0%
GAATATGAAATTGAACAGGT+AGG - chr2_1:73252456-73252475 Msa0223640:intron 30.0%
ACAAAAAAATCAGCTTCACT+CGG + chr2_1:73252616-73252635 None:intergenic 30.0%
CAGTAACTTAAGGAAATAGA+AGG + chr2_1:73252833-73252852 None:intergenic 30.0%
CTTCTATTTCCTTAAGTTAC+TGG - chr2_1:73252831-73252850 Msa0223640:CDS 30.0%
TAACAAAACCCAGTAACTTA+AGG + chr2_1:73252843-73252862 None:intergenic 30.0%
!!! GTTTTGGAGGAAAAACATGT+TGG + chr2_1:73249164-73249183 None:intergenic 35.0%
! GTTTTTGCGTGTGTTGAATT+GGG + chr2_1:73249294-73249313 None:intergenic 35.0%
!! TGTTTTTGCGTGTGTTGAAT+TGG + chr2_1:73249295-73249314 None:intergenic 35.0%
TACTACACAGAAGTTTGGTT+TGG - chr2_1:73249484-73249503 Msa0223640:intron 35.0%
ATGTATTCGATAGACACTAC+AGG - chr2_1:73249704-73249723 Msa0223640:CDS 35.0%
TGTTGATATTCATCCTCCTA+AGG - chr2_1:73249739-73249758 Msa0223640:CDS 35.0%
TCATCTCATATCCCTAATTG+AGG - chr2_1:73250029-73250048 Msa0223640:intron 35.0%
! AGGAGGAAAAATAGAGGTAT+TGG - chr2_1:73250049-73250068 Msa0223640:intron 35.0%
TAACAGTGTGAACCTTAATG+TGG - chr2_1:73250274-73250293 Msa0223640:intron 35.0%
! TCTTTTATCGAGCCAAACTA+AGG - chr2_1:73250371-73250390 Msa0223640:CDS 35.0%
CATGACTGTATGAAGTAGTT+TGG - chr2_1:73250540-73250559 Msa0223640:intron 35.0%
AGTGTAGCTAAGTCTTGATT+AGG - chr2_1:73250693-73250712 Msa0223640:CDS 35.0%
TTGGACTAAGATTTAGAGGA+AGG - chr2_1:73250762-73250781 Msa0223640:intron 35.0%
CTTTCTACGTCATGCAATAT+AGG + chr2_1:73251033-73251052 None:intergenic 35.0%
ACATAAAAAGACAGATGACG+GGG + chr2_1:73251123-73251142 None:intergenic 35.0%
CACATAAAAAGACAGATGAC+GGG + chr2_1:73251124-73251143 None:intergenic 35.0%
GATTTACCCTGTATGTTCTT+TGG - chr2_1:73251291-73251310 Msa0223640:intron 35.0%
AAGCTACCAAAGAACATACA+GGG + chr2_1:73251300-73251319 None:intergenic 35.0%
AAAGCTACCAAAGAACATAC+AGG + chr2_1:73251301-73251320 None:intergenic 35.0%
TTGTCTCACAAAGTATGATG+GGG - chr2_1:73251547-73251566 Msa0223640:CDS 35.0%
AGTAGTTCCTCAATTGAGTT+AGG + chr2_1:73251578-73251597 None:intergenic 35.0%
CATACCAAATGAGCAATCTT+AGG + chr2_1:73251620-73251639 None:intergenic 35.0%
GATTGCTCATTTGGTATGTA+CGG - chr2_1:73251622-73251641 Msa0223640:intron 35.0%
GATTATCAAGGCTGTTGTTA+TGG - chr2_1:73251927-73251946 Msa0223640:intron 35.0%
TTCTTTCTGCTGACAAACAT+CGG + chr2_1:73252054-73252073 None:intergenic 35.0%
AATACCCGAAGAAACTAGAA+AGG - chr2_1:73252180-73252199 Msa0223640:intron 35.0%
TACCATCAAATGCACCTAAA+TGG - chr2_1:73252317-73252336 Msa0223640:intron 35.0%
AACCATTTAGGTGCATTTGA+TGG + chr2_1:73252322-73252341 None:intergenic 35.0%
GAAATTGAACAGGTAGGATT+TGG - chr2_1:73252462-73252481 Msa0223640:intron 35.0%
GGACAATATGTACTCCTTTA+CGG - chr2_1:73252487-73252506 Msa0223640:intron 35.0%
ACATCATCACTAGATAGACA+CGG + chr2_1:73252713-73252732 None:intergenic 35.0%
AAGTTAGTAGCTACCTACCT+TGG + chr2_1:73249196-73249215 None:intergenic 40.0%
ATTTGCAGCAAGTGCTTCTT+TGG + chr2_1:73249332-73249351 None:intergenic 40.0%
! AAGCACTTGCTGCAAATTCA+AGG - chr2_1:73249335-73249354 Msa0223640:CDS 40.0%
!! TTTGGTTTGGCTGAGATTGA+AGG - chr2_1:73249497-73249516 Msa0223640:intron 40.0%
ATTGAAGGATCTGGATACAC+AGG - chr2_1:73249512-73249531 Msa0223640:intron 40.0%
TAGATGAAAGTCCTGCCAAT+TGG - chr2_1:73249651-73249670 Msa0223640:intron 40.0%
AGATGAAAGTCCTGCCAATT+GGG - chr2_1:73249652-73249671 Msa0223640:intron 40.0%
! TTCAAGCACGTTTTCCCAAT+TGG + chr2_1:73249669-73249688 None:intergenic 40.0%
AATTGGGAAAACGTGCTTGA+AGG - chr2_1:73249668-73249687 Msa0223640:intron 40.0%
ATTGGGAAAACGTGCTTGAA+GGG - chr2_1:73249669-73249688 Msa0223640:intron 40.0%
TCTCATATCCCTAATTGAGG+AGG - chr2_1:73250032-73250051 Msa0223640:intron 40.0%
TCGATAAAAGAGAAGATGCC+AGG + chr2_1:73250362-73250381 None:intergenic 40.0%
GAGTAACATGCTCCTTAGTT+TGG + chr2_1:73250386-73250405 None:intergenic 40.0%
GCATTCAACTTCATGGCAAT+AGG + chr2_1:73250736-73250755 None:intergenic 40.0%
!!! GGAAGGTTTTGAGCATGATT+TGG - chr2_1:73250779-73250798 Msa0223640:intron 40.0%
TTGTGCTTTCTTTCTGTGTC+TGG + chr2_1:73250995-73251014 None:intergenic 40.0%
!! ATAAAAAGACAGATGACGGG+GGG + chr2_1:73251121-73251140 None:intergenic 40.0%
! CATAAAAAGACAGATGACGG+GGG + chr2_1:73251122-73251141 None:intergenic 40.0%
ACTCAACGTCTTCGTCAAAA+TGG - chr2_1:73251214-73251233 Msa0223640:intron 40.0%
AATGCTGGAAGCTTCAAAAC+TGG + chr2_1:73251382-73251401 None:intergenic 40.0%
GGACATACCTAACTCAATTG+AGG - chr2_1:73251568-73251587 Msa0223640:CDS 40.0%
AGGTCCTAAGATTGCTCATT+TGG - chr2_1:73251613-73251632 Msa0223640:intron 40.0%
!!! CATTTTGTTTGTGGTGCTGT+AGG - chr2_1:73251727-73251746 Msa0223640:intron 40.0%
ATTGCATGGAACAATGTCCA+AGG - chr2_1:73251758-73251777 Msa0223640:intron 40.0%
TTGCATGGAACAATGTCCAA+GGG - chr2_1:73251759-73251778 Msa0223640:intron 40.0%
GAGTATCTACACATATCCCT+TGG + chr2_1:73251778-73251797 None:intergenic 40.0%
! AAACAAACCTGTTTTGTGCC+AGG + chr2_1:73251842-73251861 None:intergenic 40.0%
! GGTATTGAAGTTCTCTGACA+TGG + chr2_1:73252166-73252185 None:intergenic 40.0%
TTGAACAGGTAGGATTTGGA+AGG - chr2_1:73252466-73252485 Msa0223640:intron 40.0%
! AGACTTCAAGTTCATCTTCC+AGG - chr2_1:73252562-73252581 Msa0223640:intron 40.0%
CTTGTTCAAGCGAGACTTAT+TGG + chr2_1:73252589-73252608 None:intergenic 40.0%
TAAGTCTCGCTTGAACAAGA+AGG - chr2_1:73252590-73252609 Msa0223640:CDS 40.0%
CATCATCACTAGATAGACAC+GGG + chr2_1:73252712-73252731 None:intergenic 40.0%
!!! TTGGTGTGGATTGGTTTTGG+AGG + chr2_1:73249177-73249196 None:intergenic 45.0%
TCCAAAACCAATCCACACCA+AGG - chr2_1:73249176-73249195 Msa0223640:three_prime_UTR 45.0%
!!! ACCTTGGTGTGGATTGGTTT+TGG + chr2_1:73249180-73249199 None:intergenic 45.0%
AAACCAATCCACACCAAGGT+AGG - chr2_1:73249180-73249199 Msa0223640:three_prime_UTR 45.0%
TTGGCTGAGATTGAAGGATC+TGG - chr2_1:73249503-73249522 Msa0223640:intron 45.0%
CGATAGACACTACAGGTGAT+CGG - chr2_1:73249711-73249730 Msa0223640:CDS 45.0%
GATAGACACTACAGGTGATC+GGG - chr2_1:73249712-73249731 Msa0223640:CDS 45.0%
GGTAAGTGAACAAAATGGCC+AGG - chr2_1:73249977-73249996 Msa0223640:intron 45.0%
!! GCAACGCGTGTATTGATTGA+TGG + chr2_1:73250113-73250132 None:intergenic 45.0%
! ACTAAGGAGCATGTTACTCG+CGG - chr2_1:73250387-73250406 Msa0223640:CDS 45.0%
TGGTCATGAAAAACACGTCG+AGG - chr2_1:73250436-73250455 Msa0223640:intron 45.0%
AAGTCTTGATTAGGCTCCAG+AGG - chr2_1:73250702-73250721 Msa0223640:CDS 45.0%
GCAATAGGTTTCTCATCCTC+TGG + chr2_1:73250721-73250740 None:intergenic 45.0%
AGCAGCCATTATGTGCACTT+TGG - chr2_1:73251095-73251114 Msa0223640:intron 45.0%
!! CTTTTGGGCTTGCTTTTCTC+AGG - chr2_1:73251475-73251494 Msa0223640:intron 45.0%
ATCCAAGACGATTGCAGATG+CGG + chr2_1:73251808-73251827 None:intergenic 45.0%
CATCTGCAATCGTCTTGGAT+GGG - chr2_1:73251808-73251827 Msa0223640:intron 45.0%
! TTTGAGACCTGGCACAAAAC+AGG - chr2_1:73251832-73251851 Msa0223640:intron 45.0%
AAGTTCTCTGACATGGCACA+GGG + chr2_1:73252159-73252178 None:intergenic 45.0%
!! AGCGCCTTTCTAGTTTCTTC+GGG + chr2_1:73252187-73252206 None:intergenic 45.0%
!! CAGCGCCTTTCTAGTTTCTT+CGG + chr2_1:73252188-73252207 None:intergenic 45.0%
!! AAACTAGAAAGGCGCTGGAA+CGG - chr2_1:73252191-73252210 Msa0223640:CDS 45.0%
ATTGGAACCCATTCTTCCCT+CGG + chr2_1:73252223-73252242 None:intergenic 45.0%
! CTACCTACCTTGGTGTGGAT+TGG + chr2_1:73249186-73249205 None:intergenic 50.0%
AGTAGCTACCTACCTTGGTG+TGG + chr2_1:73249191-73249210 None:intergenic 50.0%
! AGCACGTTTTCCCAATTGGC+AGG + chr2_1:73249665-73249684 None:intergenic 50.0%
!! GGACAGAAGATTTGCTGTCC+TGG - chr2_1:73250341-73250360 Msa0223640:CDS 50.0%
!! TGGGCTTGCTTTTCTCAGGT+TGG - chr2_1:73251479-73251498 Msa0223640:intron 50.0%
!! GGGCTTGCTTTTCTCAGGTT+GGG - chr2_1:73251480-73251499 Msa0223640:intron 50.0%
GAGGAACTACTCTCACTTCC+AGG - chr2_1:73251587-73251606 Msa0223640:intron 50.0%
GCATCTGCAATCGTCTTGGA+TGG - chr2_1:73251807-73251826 Msa0223640:intron 50.0%
!!! CTTGGATGGGTTTTGAGACC+TGG - chr2_1:73251821-73251840 Msa0223640:intron 50.0%
GAAGTTCTCTGACATGGCAC+AGG + chr2_1:73252160-73252179 None:intergenic 50.0%
! CGAAGAAACTAGAAAGGCGC+TGG - chr2_1:73252186-73252205 Msa0223640:CDS 50.0%
AAGTCTCCTTGAACGCTGAC+GGG + chr2_1:73252548-73252567 None:intergenic 50.0%
GAAGTCTCCTTGAACGCTGA+CGG + chr2_1:73252549-73252568 None:intergenic 50.0%
CAAGCGAGACTTATTGGACC+TGG + chr2_1:73252583-73252602 None:intergenic 50.0%
GGGGGCCAAAGTGCACATAA+TGG + chr2_1:73251103-73251122 None:intergenic 55.0%
CTACTCTCACTTCCAGGCGT+AGG - chr2_1:73251593-73251612 Msa0223640:intron 55.0%
GCAATCTTAGGACCTACGCC+TGG + chr2_1:73251608-73251627 None:intergenic 55.0%
CAAGACGATTGCAGATGCGG+TGG + chr2_1:73251805-73251824 None:intergenic 55.0%
CACCGCATCTGCAATCGTCT+TGG - chr2_1:73251803-73251822 Msa0223640:intron 55.0%
TCTGACATGGCACAGGGAAG+AGG + chr2_1:73252153-73252172 None:intergenic 55.0%
GTGGCTTCCGAGGGAAGAAT+GGG - chr2_1:73252213-73252232 Msa0223640:CDS 55.0%
!! CTAGAAAGGCGCTGGAACGG+TGG - chr2_1:73252194-73252213 Msa0223640:CDS 60.0%
GGTGGCTTCCGAGGGAAGAA+TGG - chr2_1:73252212-73252231 Msa0223640:CDS 60.0%
ACTCCTTTACGGCCTCGCTG+TGG - chr2_1:73252498-73252517 Msa0223640:intron 60.0%
TCTCCACAGCGAGGCCGTAA+AGG + chr2_1:73252504-73252523 None:intergenic 60.0%
ACACCACACTCTCCACAGCG+AGG + chr2_1:73252513-73252532 None:intergenic 60.0%
GTTCTGCCCGTCAGCGTTCA+AGG - chr2_1:73252539-73252558 Msa0223640:intron 60.0%
GCTGGAACGGTGGCTTCCGA+GGG - chr2_1:73252204-73252223 Msa0223640:CDS 65.0%
CGCTGGAACGGTGGCTTCCG+AGG - chr2_1:73252203-73252222 Msa0223640:CDS 70.0%
CGGCCTCGCTGTGGAGAGTG+TGG - chr2_1:73252507-73252526 Msa0223640:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 73249064 73252881 73249064 ID=Msa0223640;Name=Msa0223640
chr2_1 mRNA 73249064 73252881 73249064 ID=Msa0223640-mRNA-1;Parent=Msa0223640;Name=Msa0223640-mRNA-1;_AED=0.17;_eAED=0.17;_QI=25|1|1|1|1|1|10|261|329
chr2_1 exon 73249064 73249471 73249064 ID=Msa0223640-mRNA-1:exon:21432;Parent=Msa0223640-mRNA-1
chr2_1 exon 73249690 73249773 73249690 ID=Msa0223640-mRNA-1:exon:21431;Parent=Msa0223640-mRNA-1
chr2_1 exon 73250092 73250196 73250092 ID=Msa0223640-mRNA-1:exon:21430;Parent=Msa0223640-mRNA-1
chr2_1 exon 73250311 73250448 73250311 ID=Msa0223640-mRNA-1:exon:21429;Parent=Msa0223640-mRNA-1
chr2_1 exon 73250645 73250736 73250645 ID=Msa0223640-mRNA-1:exon:21428;Parent=Msa0223640-mRNA-1
chr2_1 exon 73251537 73251603 73251537 ID=Msa0223640-mRNA-1:exon:21427;Parent=Msa0223640-mRNA-1
chr2_1 exon 73252185 73252291 73252185 ID=Msa0223640-mRNA-1:exon:21426;Parent=Msa0223640-mRNA-1
chr2_1 exon 73252388 73252451 73252388 ID=Msa0223640-mRNA-1:exon:21425;Parent=Msa0223640-mRNA-1
chr2_1 exon 73252581 73252657 73252581 ID=Msa0223640-mRNA-1:exon:21424;Parent=Msa0223640-mRNA-1
chr2_1 exon 73252748 73252881 73252748 ID=Msa0223640-mRNA-1:exon:21423;Parent=Msa0223640-mRNA-1
chr2_1 five_prime_UTR 73252857 73252881 73252857 ID=Msa0223640-mRNA-1:five_prime_utr;Parent=Msa0223640-mRNA-1
chr2_1 CDS 73252748 73252856 73252748 ID=Msa0223640-mRNA-1:cds;Parent=Msa0223640-mRNA-1
chr2_1 CDS 73252581 73252657 73252581 ID=Msa0223640-mRNA-1:cds;Parent=Msa0223640-mRNA-1
chr2_1 CDS 73252388 73252451 73252388 ID=Msa0223640-mRNA-1:cds;Parent=Msa0223640-mRNA-1
chr2_1 CDS 73252185 73252291 73252185 ID=Msa0223640-mRNA-1:cds;Parent=Msa0223640-mRNA-1
chr2_1 CDS 73251537 73251603 73251537 ID=Msa0223640-mRNA-1:cds;Parent=Msa0223640-mRNA-1
chr2_1 CDS 73250645 73250736 73250645 ID=Msa0223640-mRNA-1:cds;Parent=Msa0223640-mRNA-1
chr2_1 CDS 73250311 73250448 73250311 ID=Msa0223640-mRNA-1:cds;Parent=Msa0223640-mRNA-1
chr2_1 CDS 73250092 73250196 73250092 ID=Msa0223640-mRNA-1:cds;Parent=Msa0223640-mRNA-1
chr2_1 CDS 73249690 73249773 73249690 ID=Msa0223640-mRNA-1:cds;Parent=Msa0223640-mRNA-1
chr2_1 CDS 73249325 73249471 73249325 ID=Msa0223640-mRNA-1:cds;Parent=Msa0223640-mRNA-1
chr2_1 three_prime_UTR 73249064 73249324 73249064 ID=Msa0223640-mRNA-1:three_prime_utr;Parent=Msa0223640-mRNA-1
Gene Sequence

>Msa0223640

ATGTTTGTGTTTCCTTTTACTTATGTTTCTGTTTGTTTGGTGCGAATCTCTGTCTTCTCTTCCATTACAAGACCAACATGTTTTTCCTCCAAAACCAATCCACACCAAGTGTCCCAATTCAACACACGCAAAAACACTACACAACTTCAACCAAAGAAGCACTTGCTGCAAATTCAAGGCCAAAAAAAGTTTGGTTTGGCTGAGATTGAAGGATCTGGATACACAGGAACAAATGAATTGGGTCAAACTAATGAAAGTCCTGCCAATTGGGAAAACGTGCTTGAAGGGATTCGCAAAATGATGTATTCGATAGACACTACAGGTGATCGGGAAGATGTTGATATTCATCCTCCTAAGGACAGAAGATTTGCTGTCCTGGCATCTTCTCTTTTATCGAGCCAAACTAAGGAGCATGTTACTCGCGGAGCAACTCAACGTCTTCGTCAAAATGGTCTTCTTACTGCTGATGCACTCAACAAAGCTGATGAAGAAACTATCAGAAAACTGATTTACCCTGTTGGGTTTTATATAAGAAAAGCTGGTAACTTGAAGAAAATTGCTGATATTTGTCTCACAAAGTATGATGGGGACATACCTAACTCAATTGAGGAACTACTCTCACTTCCAGGCGTAGGTCCTAAGATTGCTCATTTGGTTATGATTATTGCATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATCTGCAATCGTCTTGGATGGGTTTTGAGACCTGGCACAAAACAGAGAACTTCAATACCCGAAGAAACTAGAAAGGCGCTGGAACGGTGGCTTCCGAGGGAAGAATGGGTTCCAATAAATTATCTTTTGGTAGGATTTGGAAGGACAATATGTACTCCTTTACGGCCTCGCTGTGGAGAGTGTGGTGTAAGTAAGTTCTGCCCGTCAGCGTTCAAGGAGACTTCAAGTTCATCTTCCAGGTCCAATAAGTCTCGCTTGAACAAGAAGGCCGAGTGA

Protein sequence

>Msa0223640

MFVFPFTYVSVCLVRISVFSSITRPTCFSSKTNPHQVSQFNTRKNTTQLQPKKHLLQIQGQKKFGLAEIEGSGYTGTNELGQTNESPANWENVLEGIRKMMYSIDTTGDREDVDIHPPKDRRFAVLASSLLSSQTKEHVTRGATQRLRQNGLLTADALNKADEETIRKLIYPVGFYIRKAGNLKKIADICLTKYDGDIPNSIEELLSLPGVGPKIAHLVMIIAWNNVQGICVDTHVHRICNRLGWVLRPGTKQRTSIPEETRKALERWLPREEWVPINYLLVGFGRTICTPLRPRCGECGVSKFCPSAFKETSSSSSRSNKSRLNKKAE*