Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223980 | ACL36992.1 | 90.741 | 108 | 10 | 0 | 5 | 112 | 137 | 244 | 3.56e-66 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223980 | sp|Q9M2U5|CHI5_ARATH | 72.477 | 109 | 30 | 0 | 4 | 112 | 127 | 235 | 8.35e-54 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223980 | B8Y647 | 90.741 | 108 | 10 | 0 | 5 | 112 | 137 | 244 | 1.70e-66 | 212 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0223980 | 0.813721 | 2.218064e-51 | -8.615850e-47 |
| Msa0223980 | Msa0534870 | 0.805770 | 1.136945e-49 | -8.615850e-47 |
| Msa0223980 | Msa0631320 | 0.811807 | 5.821265e-51 | -8.615850e-47 |
| Msa0223980 | Msa1107190 | 0.809992 | 1.438237e-50 | -8.615850e-47 |
| Msa0223980 | Msa1355890 | 0.824294 | 8.726709e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223980 | MtrunA17_Chr2g0329791 | 87.963 | 108 | 13 | 0 | 5 | 112 | 137 | 244 | 9.90e-68 | 205 |
| Msa0223980 | MtrunA17_Chr2g0329781 | 76.147 | 109 | 25 | 1 | 5 | 112 | 117 | 225 | 1.39e-57 | 179 |
| Msa0223980 | MtrunA17_Chr7g0270841 | 60.759 | 79 | 30 | 1 | 17 | 95 | 118 | 195 | 2.99e-31 | 112 |
| Msa0223980 | MtrunA17_Chr3g0145981 | 58.228 | 79 | 31 | 2 | 17 | 95 | 173 | 249 | 2.19e-25 | 98.2 |
| Msa0223980 | MtrunA17_Chr8g0370851 | 56.410 | 78 | 31 | 2 | 17 | 94 | 162 | 236 | 5.29e-23 | 91.3 |
| Msa0223980 | MtrunA17_Chr8g0370821 | 51.282 | 78 | 35 | 2 | 17 | 94 | 173 | 247 | 1.45e-20 | 84.7 |
| Msa0223980 | MtrunA17_Chr2g0294721 | 36.667 | 120 | 52 | 3 | 17 | 113 | 140 | 258 | 1.15e-17 | 77.0 |
| Msa0223980 | MtrunA17_Chr1g0206111 | 41.463 | 82 | 46 | 2 | 17 | 97 | 147 | 227 | 6.95e-17 | 74.7 |
| Msa0223980 | MtrunA17_Chr7g0221751 | 40.244 | 82 | 47 | 2 | 17 | 97 | 144 | 224 | 2.47e-16 | 73.2 |
| Msa0223980 | MtrunA17_Chr8g0370831 | 55.556 | 54 | 24 | 0 | 41 | 94 | 172 | 225 | 6.61e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223980 | AT3G54420.1 | 72.477 | 109 | 30 | 0 | 4 | 112 | 127 | 235 | 8.49e-55 | 172 |
| Msa0223980 | AT2G43590.1 | 55.462 | 119 | 46 | 1 | 1 | 112 | 109 | 227 | 7.93e-44 | 144 |
| Msa0223980 | AT2G43580.1 | 53.782 | 119 | 48 | 1 | 1 | 112 | 110 | 228 | 2.95e-41 | 137 |
| Msa0223980 | AT2G43570.1 | 53.509 | 114 | 49 | 1 | 5 | 114 | 128 | 241 | 3.89e-36 | 125 |
| Msa0223980 | AT1G02360.1 | 64.557 | 79 | 27 | 1 | 17 | 95 | 112 | 189 | 8.15e-35 | 121 |
| Msa0223980 | AT1G02360.3 | 64.557 | 79 | 27 | 1 | 17 | 95 | 164 | 241 | 1.15e-34 | 122 |
| Msa0223980 | AT1G02360.2 | 64.557 | 79 | 27 | 1 | 17 | 95 | 158 | 235 | 1.38e-34 | 122 |
| Msa0223980 | AT4G01700.1 | 62.821 | 78 | 28 | 1 | 17 | 94 | 120 | 196 | 1.51e-31 | 113 |
| Msa0223980 | AT2G43610.1 | 49.074 | 108 | 52 | 2 | 5 | 112 | 140 | 244 | 7.10e-31 | 111 |
| Msa0223980 | AT2G43620.1 | 49.074 | 108 | 52 | 2 | 5 | 112 | 142 | 246 | 2.92e-30 | 110 |
| Msa0223980 | AT3G12500.1 | 53.846 | 91 | 34 | 3 | 17 | 101 | 168 | 256 | 1.80e-26 | 101 |
| Msa0223980 | AT3G47540.1 | 41.905 | 105 | 47 | 2 | 9 | 112 | 86 | 177 | 2.78e-21 | 85.1 |
| Msa0223980 | AT3G47540.2 | 41.905 | 105 | 47 | 2 | 9 | 112 | 86 | 177 | 6.36e-21 | 85.5 |
| Msa0223980 | AT1G56680.1 | 40.351 | 114 | 64 | 3 | 4 | 116 | 135 | 245 | 2.09e-20 | 84.0 |
| Msa0223980 | AT1G56680.2 | 40.708 | 113 | 63 | 3 | 4 | 115 | 158 | 267 | 2.81e-20 | 84.0 |
| Msa0223980 | AT1G05850.1 | 41.463 | 82 | 46 | 2 | 17 | 97 | 144 | 224 | 1.78e-17 | 76.6 |
| Msa0223980 | AT1G05850.2 | 41.463 | 82 | 46 | 2 | 17 | 97 | 144 | 224 | 1.78e-17 | 76.6 |
| Msa0223980 | AT2G43600.2 | 40.000 | 100 | 55 | 4 | 14 | 112 | 162 | 257 | 5.21e-17 | 75.1 |
| Msa0223980 | AT2G43600.1 | 40.000 | 100 | 55 | 4 | 14 | 112 | 141 | 236 | 5.33e-17 | 75.1 |
| Msa0223980 | AT3G16920.2 | 34.167 | 120 | 55 | 4 | 17 | 113 | 176 | 294 | 8.39e-16 | 72.4 |
| Msa0223980 | AT3G16920.1 | 34.167 | 120 | 55 | 4 | 17 | 113 | 152 | 270 | 1.19e-15 | 72.0 |
Find 38 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCATTGGCCACTGTTTC+AGG | 0.200039 | 2_1:+73700906 | Msa0223990:CDS |
| TGTTCAAATCAAACTGTTTC+AGG | 0.222718 | 2_1:+73700759 | None:intergenic |
| CGACCGTAGTAACCTTTGTT+AGG | 0.286313 | 2_1:+73701005 | Msa0223990:intron |
| CTATCTTGGAACTACAACTA+TGG | 0.300245 | 2_1:-73700969 | Msa0223980:CDS |
| TATAGTATACATGAACCATT+AGG | 0.315883 | 2_1:-73700792 | Msa0223980:CDS |
| TCATCACAGTAGTCCTTTGA+TGG | 0.329355 | 2_1:+73701053 | Msa0223990:intron |
| AAGGCTTTGGTGCAACCATT+AGG | 0.341342 | 2_1:-73700821 | Msa0223980:CDS |
| TCAAGACAGCATTATGGTAT+TGG | 0.355700 | 2_1:-73700872 | Msa0223980:CDS |
| TGTCCTTCAAGACAGCATTA+TGG | 0.387076 | 2_1:-73700878 | Msa0223980:CDS |
| TGCTATACCGAAGAGATTGA+TGG | 0.389108 | 2_1:-73701077 | Msa0223980:CDS |
| ATACCATAATGCTGTCTTGA+AGG | 0.394568 | 2_1:+73700875 | Msa0223990:CDS |
| AGGCTTTGGTGCAACCATTA+GGG | 0.395270 | 2_1:-73700820 | Msa0223980:CDS |
| TCAGGACACAACAGCCCTAA+TGG | 0.398850 | 2_1:+73700777 | None:intergenic |
| GACCGTAGTAACCTTTGTTA+GGG | 0.424083 | 2_1:+73701006 | Msa0223990:intron |
| TATACTATAAATAGCCCTAA+TGG | 0.426268 | 2_1:+73700806 | None:intergenic |
| GAAGGACACAACAGCATCAT+TGG | 0.428454 | 2_1:+73700893 | Msa0223990:CDS |
| ATAGTATACATGAACCATTA+GGG | 0.430961 | 2_1:-73700791 | Msa0223980:CDS |
| GGTGTCATCAACCAAGGCTT+TGG | 0.445762 | 2_1:-73700834 | Msa0223980:CDS |
| GTGGACCGATTCAACTATCT+TGG | 0.452579 | 2_1:-73700983 | Msa0223980:CDS |
| TGATGGACCATCAATCTCTT+CGG | 0.485027 | 2_1:+73701070 | Msa0223990:intron |
| TAGTTCCAAGATAGTTGAAT+CGG | 0.500260 | 2_1:+73700978 | Msa0223990:intron |
| TAATGGTTGCACCAAAGCCT+TGG | 0.502879 | 2_1:+73700823 | None:intergenic |
| AACTACAACTATGGACCAGC+TGG | 0.503629 | 2_1:-73700960 | Msa0223980:CDS |
| TTGCAGGGTTTCATGGCGAA+TGG | 0.513549 | 2_1:-73704270 | None:intergenic |
| AAACCATTGTCTCTTCCAGC+TGG | 0.544197 | 2_1:+73700945 | Msa0223990:CDS |
| AACAAAGGTTACTACGGTCG+TGG | 0.552838 | 2_1:-73701002 | Msa0223980:CDS |
| TAACCTTTGTTAGGGGCACA+TGG | 0.560210 | 2_1:+73701014 | Msa0223990:intron |
| AGAGATTGATGGTCCATCAA+AGG | 0.581585 | 2_1:-73701066 | Msa0223980:CDS |
| ATTGAACTCTCCTGAAACAG+TGG | 0.597631 | 2_1:-73700916 | Msa0223980:CDS |
| GAGATAGATAATCGCAGCGG+AGG | 0.603530 | 2_1:-73704234 | Msa0223980:intron |
| GCCCCTAACAAAGGTTACTA+CGG | 0.616806 | 2_1:-73701008 | Msa0223980:CDS |
| TGGCCATGTGCCCCTAACAA+AGG | 0.618946 | 2_1:-73701017 | Msa0223980:CDS |
| GGACCAGCTGGAAGAGACAA+TGG | 0.624670 | 2_1:-73700948 | Msa0223980:CDS |
| ACCGTAGTAACCTTTGTTAG+GGG | 0.669486 | 2_1:+73701007 | Msa0223990:intron |
| GTGCACGGTGTCATCAACCA+AGG | 0.695993 | 2_1:-73700840 | Msa0223980:CDS |
| AGAGAGATAGATAATCGCAG+CGG | 0.722922 | 2_1:-73704237 | Msa0223980:CDS |
| TATTGGATGAATAATGTGCA+CGG | 0.742029 | 2_1:-73700855 | Msa0223980:CDS |
| GTGATGAAAACAACACAGAG+TGG | 0.752581 | 2_1:-73701037 | Msa0223980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTATTTTATTTTTA+AGG | - | chr2_1:73702753-73702772 | Msa0223980:intron | 0.0% |
| !!! | ATTTGATTTTTGTTAAAAAA+TGG | - | chr2_1:73701599-73701618 | Msa0223980:intron | 10.0% |
| !!! | TTATAGTATTGAATAATTTT+TGG | + | chr2_1:73701818-73701837 | Msa0223990:intron | 10.0% |
| !! | AACAATATTCATAAAAATAA+GGG | + | chr2_1:73703478-73703497 | Msa0223990:intron | 10.0% |
| !!! | TATTAATTTGTTATCAAATT+TGG | - | chr2_1:73703813-73703832 | Msa0223980:intron | 10.0% |
| !! | AAATTCATTTATTTAATCCA+TGG | + | chr2_1:73702052-73702071 | Msa0223990:intron | 15.0% |
| !! | TTAGCTAAAATTTAGAAATA+AGG | + | chr2_1:73702457-73702476 | Msa0223990:intron | 15.0% |
| !!! | TTTTTTTTAAATGTTATCCA+TGG | - | chr2_1:73702495-73702514 | Msa0223980:intron | 15.0% |
| !! | CAACAATATTCATAAAAATA+AGG | + | chr2_1:73703479-73703498 | Msa0223990:intron | 15.0% |
| !!! | TATTGTTGTTTTTAGTTTAA+TGG | - | chr2_1:73703491-73703510 | Msa0223980:intron | 15.0% |
| !! | TTATTATTTAAAGAAACCGT+TGG | + | chr2_1:73701002-73701021 | Msa0223990:intron | 20.0% |
| !!! | TATTGATGCCTTTTTTTTTT+GGG | + | chr2_1:73701472-73701491 | Msa0223990:intron | 20.0% |
| !!! | TTATTGATGCCTTTTTTTTT+TGG | + | chr2_1:73701473-73701492 | Msa0223990:intron | 20.0% |
| !!! | GATTTTTGTTAAAAAATGGA+AGG | - | chr2_1:73701603-73701622 | Msa0223980:intron | 20.0% |
| !!! | TTTTGGTCTTATATGATTTT+TGG | + | chr2_1:73701801-73701820 | Msa0223990:intron | 20.0% |
| !! | TAATTTACTCAGTTTAATAG+CGG | + | chr2_1:73702145-73702164 | Msa0223990:intron | 20.0% |
| !!! | ATCACTTTACTTTCTTTTAA+AGG | + | chr2_1:73702243-73702262 | Msa0223990:intron | 20.0% |
| !! | TTAAAAGAAAGTAAAGTGAT+TGG | - | chr2_1:73702243-73702262 | Msa0223980:intron | 20.0% |
| !! | TAAAAGAAAGTAAAGTGATT+GGG | - | chr2_1:73702244-73702263 | Msa0223980:intron | 20.0% |
| !!! | ACTTTATTCATGTTTTTGTT+GGG | - | chr2_1:73702356-73702375 | Msa0223980:intron | 20.0% |
| !!! | TTTTTAGATGAAACAATTTC+AGG | - | chr2_1:73702863-73702882 | Msa0223980:intron | 20.0% |
| !! | ATAAGAAAAACAACATTAGT+CGG | + | chr2_1:73703150-73703169 | Msa0223990:intron | 20.0% |
| !!! | GTTTTAGAATTGATTTTTCT+TGG | + | chr2_1:73703285-73703304 | Msa0223990:intron | 20.0% |
| !!! | ATTTAAAAGTGCATAATTGA+CGG | + | chr2_1:73703639-73703658 | Msa0223990:intron | 20.0% |
| !! | ATTAAACCCTCTATTTTGTT+AGG | - | chr2_1:73700883-73700902 | Msa0223980:CDS | 25.0% |
| ! | AATGTTCCTAACAAAATAGA+GGG | + | chr2_1:73700892-73700911 | Msa0223990:CDS | 25.0% |
| ! | TAATGTTCCTAACAAAATAG+AGG | + | chr2_1:73700893-73700912 | Msa0223990:CDS | 25.0% |
| !! | ATGTATAAACTTCCTTTTAG+TGG | - | chr2_1:73701336-73701355 | Msa0223980:intron | 25.0% |
| !! | TGTATAAACTTCCTTTTAGT+GGG | - | chr2_1:73701337-73701356 | Msa0223980:intron | 25.0% |
| !!! | GGACAATCTACTATTTTAAA+AGG | - | chr2_1:73701358-73701377 | Msa0223980:intron | 25.0% |
| ! | TAAGTAAATTCACCTCTTTA+GGG | + | chr2_1:73701573-73701592 | Msa0223990:intron | 25.0% |
| ! | TAAAGAGGTGAATTTACTTA+GGG | - | chr2_1:73701573-73701592 | Msa0223980:intron | 25.0% |
| !! | GGTTTTACTTAGTGTATATT+GGG | - | chr2_1:73701943-73701962 | Msa0223980:intron | 25.0% |
| ! | TTTAACTACCTGCTAATTAA+TGG | - | chr2_1:73702072-73702091 | Msa0223980:intron | 25.0% |
| ! | AATTTACTCAGTTTAATAGC+GGG | + | chr2_1:73702144-73702163 | Msa0223990:intron | 25.0% |
| ! | TAGGAAGTTGAATGATATTA+AGG | + | chr2_1:73702177-73702196 | Msa0223990:intron | 25.0% |
| !!! | GACTTTATTCATGTTTTTGT+TGG | - | chr2_1:73702355-73702374 | Msa0223980:intron | 25.0% |
| ! | CATGGATATCCATTTAAATT+GGG | - | chr2_1:73702651-73702670 | Msa0223980:intron | 25.0% |
| ! | TTTGCTAAAAAAGAGAACAT+GGG | + | chr2_1:73702821-73702840 | Msa0223990:intron | 25.0% |
| !! | TTTTGCTAAAAAAGAGAACA+TGG | + | chr2_1:73702822-73702841 | Msa0223990:intron | 25.0% |
| ! | TAAGAAAAACAACATTAGTC+GGG | + | chr2_1:73703149-73703168 | Msa0223990:intron | 25.0% |
| !!! | TGTTGTTTTTAGTTTAATGG+TGG | - | chr2_1:73703494-73703513 | Msa0223980:intron | 25.0% |
| ! | AGATAAAAGAGATGTATTAG+TGG | - | chr2_1:73703529-73703548 | Msa0223980:intron | 25.0% |
| !! | AAGTTTCTTACATTTGAAAC+CGG | + | chr2_1:73703671-73703690 | Msa0223990:intron | 25.0% |
| !!! | CGTTAATTTTGTTTAGTTGT+TGG | + | chr2_1:73703772-73703791 | Msa0223990:intron | 25.0% |
| !! | TCTCATATTCTCTTTTTACT+AGG | - | chr2_1:73703871-73703890 | Msa0223980:intron | 25.0% |
| !! | CTCATATTCTCTTTTTACTA+GGG | - | chr2_1:73703872-73703891 | Msa0223980:intron | 25.0% |
| ! | TATACTATAAATAGCCCTAA+TGG | + | chr2_1:73704222-73704241 | Msa0223990:CDS | 25.0% |
| ! | TATAGTATACATGAACCATT+AGG | - | chr2_1:73704233-73704252 | Msa0223980:intron | 25.0% |
| ! | ATAGTATACATGAACCATTA+GGG | - | chr2_1:73704234-73704253 | Msa0223980:intron | 25.0% |
| ACTTAGATCTGTGTTAATGT+GGG | + | chr2_1:73700967-73700986 | Msa0223990:intron | 30.0% | |
| TCAAATGTGAAAATGCACTT+AGG | + | chr2_1:73701285-73701304 | Msa0223990:intron | 30.0% | |
| ACTTTACTCAGCGTATATTA+GGG | + | chr2_1:73701547-73701566 | Msa0223990:intron | 30.0% | |
| CTAAGTAAATTCACCTCTTT+AGG | + | chr2_1:73701574-73701593 | Msa0223990:intron | 30.0% | |
| CTAAAGAGGTGAATTTACTT+AGG | - | chr2_1:73701572-73701591 | Msa0223980:intron | 30.0% | |
| TGTTAAAAAATGGAAGGACA+TGG | - | chr2_1:73701609-73701628 | Msa0223980:intron | 30.0% | |
| AACTCCAATTGTATAGTGTT+TGG | - | chr2_1:73701633-73701652 | Msa0223980:intron | 30.0% | |
| GAAACCAAACACTATACAAT+TGG | + | chr2_1:73701640-73701659 | Msa0223990:intron | 30.0% | |
| TGAAACAAAAAGTTGTGATG+TGG | + | chr2_1:73701738-73701757 | Msa0223990:intron | 30.0% | |
| ! | CGGTTTTACTTAGTGTATAT+TGG | - | chr2_1:73701942-73701961 | Msa0223980:intron | 30.0% |
| TTACTTAGTGTATATTGGGT+AGG | - | chr2_1:73701947-73701966 | Msa0223980:intron | 30.0% | |
| TACTTAGTGTATATTGGGTA+GGG | - | chr2_1:73701948-73701967 | Msa0223980:intron | 30.0% | |
| TAATCCATGGATATCCATTA+AGG | + | chr2_1:73702039-73702058 | Msa0223990:intron | 30.0% | |
| ATCTGTATCCATTAATTAGC+AGG | + | chr2_1:73702083-73702102 | Msa0223990:intron | 30.0% | |
| !!! | AATACCTAGGGTTTTTTCTT+AGG | + | chr2_1:73702196-73702215 | Msa0223990:intron | 30.0% |
| CGGATTTCATATTTATCCAA+CGG | - | chr2_1:73702598-73702617 | Msa0223980:intron | 30.0% | |
| CCAATTTAAATGGATATCCA+TGG | + | chr2_1:73702653-73702672 | Msa0223990:intron | 30.0% | |
| CCATGGATATCCATTTAAAT+TGG | - | chr2_1:73702650-73702669 | Msa0223980:intron | 30.0% | |
| TCTTTCACCTGAAAATCATT+GGG | - | chr2_1:73702908-73702927 | Msa0223980:intron | 30.0% | |
| ! | GTATTAACCCAATGATTTTC+AGG | + | chr2_1:73702918-73702937 | Msa0223990:intron | 30.0% |
| TAATACCAAAACAGTTGGTT+AGG | - | chr2_1:73702932-73702951 | Msa0223980:intron | 30.0% | |
| !! | TTCTTGGTGTCAATATTGAT+GGG | + | chr2_1:73703269-73703288 | Msa0223990:intron | 30.0% |
| !! | TTTCTTGGTGTCAATATTGA+TGG | + | chr2_1:73703270-73703289 | Msa0223990:intron | 30.0% |
| CTTGAATTGAACTCATTTCA+AGG | + | chr2_1:73703307-73703326 | Msa0223990:intron | 30.0% | |
| CTTGAAATGAGTTCAATTCA+AGG | - | chr2_1:73703305-73703324 | Msa0223980:intron | 30.0% | |
| AAACACAGATCTACATTGAT+TGG | + | chr2_1:73703352-73703371 | Msa0223990:intron | 30.0% | |
| GAAGAAGATGAAGAAAATAG+TGG | + | chr2_1:73703562-73703581 | Msa0223990:intron | 30.0% | |
| ! | TTTTCTTCATCTTCTTCCAA+TGG | - | chr2_1:73703565-73703584 | Msa0223980:intron | 30.0% |
| GTTCATTCAATACATGAAAC+TGG | - | chr2_1:73703703-73703722 | Msa0223980:intron | 30.0% | |
| AAATTTGGTTACACAACTGT+TGG | - | chr2_1:73703828-73703847 | Msa0223980:intron | 30.0% | |
| AATTTGGTTACACAACTGTT+GGG | - | chr2_1:73703829-73703848 | Msa0223980:intron | 30.0% | |
| TAGTTCCAAGATAGTTGAAT+CGG | + | chr2_1:73704050-73704069 | Msa0223990:intron | 30.0% | |
| TATTGGATGAATAATGTGCA+CGG | - | chr2_1:73704170-73704189 | Msa0223980:intron | 30.0% | |
| GACTTAGATCTGTGTTAATG+TGG | + | chr2_1:73700968-73700987 | Msa0223990:intron | 35.0% | |
| TAGTAGATTGTCCCACTAAA+AGG | + | chr2_1:73701351-73701370 | Msa0223990:intron | 35.0% | |
| GACAATGCATAACATATGCA+AGG | - | chr2_1:73701421-73701440 | Msa0223980:intron | 35.0% | |
| !!! | TTTTTTTTTTGGGTGGTGGT+CGG | + | chr2_1:73701462-73701481 | Msa0223990:intron | 35.0% |
| !!! | TGATGCCTTTTTTTTTTGGG+TGG | + | chr2_1:73701469-73701488 | Msa0223990:intron | 35.0% |
| CTTTACTCAGCGTATATTAG+GGG | + | chr2_1:73701546-73701565 | Msa0223990:intron | 35.0% | |
| GACTTTACTCAGCGTATATT+AGG | + | chr2_1:73701548-73701567 | Msa0223990:intron | 35.0% | |
| !! | TGTCATGTATTGTTTTGCCT+TGG | - | chr2_1:73701843-73701862 | Msa0223980:intron | 35.0% |
| !! | GTCATGTATTGTTTTGCCTT+GGG | - | chr2_1:73701844-73701863 | Msa0223980:intron | 35.0% |
| ATCAAATGCACACTTAGTGT+TGG | - | chr2_1:73701917-73701936 | Msa0223980:intron | 35.0% | |
| TCAAATGCACACTTAGTGTT+GGG | - | chr2_1:73701918-73701937 | Msa0223980:intron | 35.0% | |
| ! | GATACCTTAATGGATATCCA+TGG | - | chr2_1:73702032-73702051 | Msa0223980:intron | 35.0% |
| GGATACAGATGCGAATTTAA+TGG | - | chr2_1:73702093-73702112 | Msa0223980:intron | 35.0% | |
| ACTTCCTAAGAAAAAACCCT+AGG | - | chr2_1:73702189-73702208 | Msa0223980:intron | 35.0% | |
| AGTAACACTCACAATACCTA+GGG | + | chr2_1:73702208-73702227 | Msa0223990:intron | 35.0% | |
| TAGTAACACTCACAATACCT+AGG | + | chr2_1:73702209-73702228 | Msa0223990:intron | 35.0% | |
| TAAATGGATATCCATGGATG+CGG | + | chr2_1:73702647-73702666 | Msa0223990:intron | 35.0% | |
| TCACAGTGACCCAATTTAAA+TGG | + | chr2_1:73702663-73702682 | Msa0223990:intron | 35.0% | |
| TAGTTAACTTTGAATGTGGG+TGG | + | chr2_1:73702798-73702817 | Msa0223990:intron | 35.0% | |
| GGGTAGTTAACTTTGAATGT+GGG | + | chr2_1:73702801-73702820 | Msa0223990:intron | 35.0% | |
| TGGGTAGTTAACTTTGAATG+TGG | + | chr2_1:73702802-73702821 | Msa0223990:intron | 35.0% | |
| !!! | CAATGATTTTCAGGTGAAAG+AGG | + | chr2_1:73702909-73702928 | Msa0223990:intron | 35.0% |
| CTCTTTCACCTGAAAATCAT+TGG | - | chr2_1:73702907-73702926 | Msa0223980:intron | 35.0% | |
| TGGGTTAATACCAAAACAGT+TGG | - | chr2_1:73702927-73702946 | Msa0223980:intron | 35.0% | |
| ! | CAATTCCTAACCAACTGTTT+TGG | + | chr2_1:73702940-73702959 | Msa0223990:intron | 35.0% |
| ! | ATCTACATTGATTGGTTAGG+TGG | + | chr2_1:73703344-73703363 | Msa0223990:intron | 35.0% |
| ! | CAGATCTACATTGATTGGTT+AGG | + | chr2_1:73703347-73703366 | Msa0223990:intron | 35.0% |
| ! | ACTTTTAAATGTACTCCCTC+CGG | - | chr2_1:73703649-73703668 | Msa0223980:intron | 35.0% |
| ! | TTCTTACATTTGAAACCGGA+GGG | + | chr2_1:73703667-73703686 | Msa0223990:intron | 35.0% |
| ! | TTTCTTACATTTGAAACCGG+AGG | + | chr2_1:73703668-73703687 | Msa0223990:intron | 35.0% |
| CTATCTTGGAACTACAACTA+TGG | - | chr2_1:73704056-73704075 | Msa0223980:intron | 35.0% | |
| ATACCATAATGCTGTCTTGA+AGG | + | chr2_1:73704153-73704172 | Msa0223990:intron | 35.0% | |
| TCAAGACAGCATTATGGTAT+TGG | - | chr2_1:73704153-73704172 | Msa0223980:intron | 35.0% | |
| AGAGAGATAGATAATCGCAG+CGG | - | chr2_1:73700788-73700807 | Msa0223980:CDS | 40.0% | |
| AAACCCTCTTGTAGCTGTTA+CGG | - | chr2_1:73700912-73700931 | Msa0223980:CDS | 40.0% | |
| TCGAACCTTGAGGACTTAAA+AGG | - | chr2_1:73701100-73701119 | Msa0223980:intron | 40.0% | |
| !! | GCTTTCCTTTTAAGTCCTCA+AGG | + | chr2_1:73701108-73701127 | Msa0223990:intron | 40.0% |
| TGCATAACATATGCAAGGTC+TGG | - | chr2_1:73701426-73701445 | Msa0223980:intron | 40.0% | |
| GCATAACATATGCAAGGTCT+GGG | - | chr2_1:73701427-73701446 | Msa0223980:intron | 40.0% | |
| CATAACATATGCAAGGTCTG+GGG | - | chr2_1:73701428-73701447 | Msa0223980:intron | 40.0% | |
| !!! | TTTTTTTTTGGGTGGTGGTC+GGG | + | chr2_1:73701461-73701480 | Msa0223990:intron | 40.0% |
| GACCACCACCCAAAAAAAAA+AGG | - | chr2_1:73701461-73701480 | Msa0223980:intron | 40.0% | |
| !!! | TGCCTTTTTTTTTTGGGTGG+TGG | + | chr2_1:73701466-73701485 | Msa0223990:intron | 40.0% |
| TCAGTAACATGACAAACCAG+AGG | - | chr2_1:73701670-73701689 | Msa0223980:intron | 40.0% | |
| GTTGTGATGTGGTTTGATGA+GGG | + | chr2_1:73701727-73701746 | Msa0223990:intron | 40.0% | |
| AGTTGTGATGTGGTTTGATG+AGG | + | chr2_1:73701728-73701747 | Msa0223990:intron | 40.0% | |
| TAGTGTATATTGGGTAGGGA+TGG | - | chr2_1:73701952-73701971 | Msa0223980:intron | 40.0% | |
| ! | ATTTTATCCGCGGATATCCA+CGG | + | chr2_1:73701993-73702012 | Msa0223990:intron | 40.0% |
| !! | ACTCAGTTTAATAGCGGGTA+TGG | + | chr2_1:73702139-73702158 | Msa0223990:intron | 40.0% |
| CGGGTTTATAGAGATATCCA+TGG | + | chr2_1:73702515-73702534 | Msa0223990:intron | 40.0% | |
| TGGATATCTCTATAAACCCG+CGG | - | chr2_1:73702515-73702534 | Msa0223980:intron | 40.0% | |
| !!! | TTTTCAGGTGAAAGAGGTCA+TGG | + | chr2_1:73702903-73702922 | Msa0223990:intron | 40.0% |
| ATTCGTTGAGTCTTGAGACT+TGG | - | chr2_1:73703045-73703064 | Msa0223980:intron | 40.0% | |
| TCTTCATCTTCTTCCAATGG+AGG | - | chr2_1:73703568-73703587 | Msa0223980:intron | 40.0% | |
| GGAGCCAGACAAAAAAGTTT+GGG | - | chr2_1:73703598-73703617 | Msa0223980:intron | 40.0% | |
| GAGCCAGACAAAAAAGTTTG+GGG | - | chr2_1:73703599-73703618 | Msa0223980:intron | 40.0% | |
| TGCTATACCGAAGAGATTGA+TGG | - | chr2_1:73703948-73703967 | Msa0223980:intron | 40.0% | |
| ! | TGATGGACCATCAATCTCTT+CGG | + | chr2_1:73703958-73703977 | Msa0223990:intron | 40.0% |
| ! | AGAGATTGATGGTCCATCAA+AGG | - | chr2_1:73703959-73703978 | Msa0223980:intron | 40.0% |
| TCATCACAGTAGTCCTTTGA+TGG | + | chr2_1:73703975-73703994 | Msa0223990:intron | 40.0% | |
| GTGATGAAAACAACACAGAG+TGG | - | chr2_1:73703988-73704007 | Msa0223980:intron | 40.0% | |
| ACCGTAGTAACCTTTGTTAG+GGG | + | chr2_1:73704021-73704040 | Msa0223990:intron | 40.0% | |
| GACCGTAGTAACCTTTGTTA+GGG | + | chr2_1:73704022-73704041 | Msa0223990:intron | 40.0% | |
| !!! | GGAAGAGACAATGGTTTTGA+TGG | - | chr2_1:73704086-73704105 | Msa0223980:intron | 40.0% |
| ATTGAACTCTCCTGAAACAG+TGG | - | chr2_1:73704109-73704128 | Msa0223980:intron | 40.0% | |
| TGTCCTTCAAGACAGCATTA+TGG | - | chr2_1:73704147-73704166 | Msa0223980:intron | 40.0% | |
| ACTAAAGTTAGCTCCGTCGT+GGG | + | chr2_1:73700856-73700875 | Msa0223990:CDS | 45.0% | |
| AACTAAAGTTAGCTCCGTCG+TGG | + | chr2_1:73700857-73700876 | Msa0223990:CDS | 45.0% | |
| AACCCTCTTGTAGCTGTTAC+GGG | - | chr2_1:73700913-73700932 | Msa0223980:CDS | 45.0% | |
| AAGTCGTGCGATTCATCCAA+CGG | - | chr2_1:73700983-73701002 | Msa0223980:CDS | 45.0% | |
| GGCTAATTTCTCGAACCTTG+AGG | - | chr2_1:73701090-73701109 | Msa0223980:intron | 45.0% | |
| CCAATTGAGTTAAGCTCACG+AGG | + | chr2_1:73701397-73701416 | Msa0223990:intron | 45.0% | |
| CCTCGTGAGCTTAACTCAAT+TGG | - | chr2_1:73701394-73701413 | Msa0223980:intron | 45.0% | |
| !!! | TTTTTTTTGGGTGGTGGTCG+GGG | + | chr2_1:73701460-73701479 | Msa0223990:intron | 45.0% |
| GAGTAAAGTCGACCCTAAAG+AGG | - | chr2_1:73701558-73701577 | Msa0223980:intron | 45.0% | |
| AGACGAAATAACACAGCCCA+AGG | + | chr2_1:73701863-73701882 | Msa0223990:intron | 45.0% | |
| ! | ATGCACACTTAGTGTTGGGA+CGG | - | chr2_1:73701922-73701941 | Msa0223980:intron | 45.0% |
| ! | TTTTATCCGCGGATATCCAC+GGG | + | chr2_1:73701992-73702011 | Msa0223990:intron | 45.0% |
| GATAAAATCCGCCATGGACA+CGG | - | chr2_1:73702005-73702024 | Msa0223980:intron | 45.0% | |
| TTTATCCAACGGAGCAGACA+CGG | - | chr2_1:73702609-73702628 | Msa0223980:intron | 45.0% | |
| TATCACACTATCCGCATCCA+TGG | - | chr2_1:73702633-73702652 | Msa0223980:intron | 45.0% | |
| !! | TTGGTTAGGTGGTGTTGACT+TGG | + | chr2_1:73703333-73703352 | Msa0223990:intron | 45.0% |
| CGGAGCCAGACAAAAAAGTT+TGG | - | chr2_1:73703597-73703616 | Msa0223980:intron | 45.0% | |
| !!! | CCACCCCAAACTTTTTTGTC+TGG | + | chr2_1:73703605-73703624 | Msa0223990:intron | 45.0% |
| CCAGACAAAAAAGTTTGGGG+TGG | - | chr2_1:73703602-73703621 | Msa0223980:intron | 45.0% | |
| ! | TAACCTTTGTTAGGGGCACA+TGG | + | chr2_1:73704014-73704033 | Msa0223990:intron | 45.0% |
| GCCCCTAACAAAGGTTACTA+CGG | - | chr2_1:73704017-73704036 | Msa0223980:intron | 45.0% | |
| CGACCGTAGTAACCTTTGTT+AGG | + | chr2_1:73704023-73704042 | Msa0223990:intron | 45.0% | |
| AACAAAGGTTACTACGGTCG+TGG | - | chr2_1:73704023-73704042 | Msa0223980:intron | 45.0% | |
| ! | GTGGACCGATTCAACTATCT+TGG | - | chr2_1:73704042-73704061 | Msa0223980:intron | 45.0% |
| AACTACAACTATGGACCAGC+TGG | - | chr2_1:73704065-73704084 | Msa0223980:intron | 45.0% | |
| AAACCATTGTCTCTTCCAGC+TGG | + | chr2_1:73704083-73704102 | Msa0223990:intron | 45.0% | |
| GAAGGACACAACAGCATCAT+TGG | + | chr2_1:73704135-73704154 | Msa0223990:intron | 45.0% | |
| TAATGGTTGCACCAAAGCCT+TGG | + | chr2_1:73704205-73704224 | Msa0223990:CDS | 45.0% | |
| ! | AAGGCTTTGGTGCAACCATT+AGG | - | chr2_1:73704204-73704223 | Msa0223980:intron | 45.0% |
| ! | AGGCTTTGGTGCAACCATTA+GGG | - | chr2_1:73704205-73704224 | Msa0223980:intron | 45.0% |
| !!! | TTTTCTTATTTTTATTTTTA+TGG | - | chr2_1:73703161-73703180 | Msa0223980:intron | 5.0% |
| GAGATAGATAATCGCAGCGG+AGG | - | chr2_1:73700791-73700810 | Msa0223980:CDS | 50.0% | |
| ACCCTCTTGTAGCTGTTACG+GGG | - | chr2_1:73700914-73700933 | Msa0223980:CDS | 50.0% | |
| TCCCCGTAACAGCTACAAGA+GGG | + | chr2_1:73700918-73700937 | Msa0223990:CDS | 50.0% | |
| ATCCCCGTAACAGCTACAAG+AGG | + | chr2_1:73700919-73700938 | Msa0223990:CDS | 50.0% | |
| TTGTAGCTGTTACGGGGATG+TGG | - | chr2_1:73700920-73700939 | Msa0223980:CDS | 50.0% | |
| TGTGGATTCACTGCGTTCAC+AGG | - | chr2_1:73700938-73700957 | Msa0223980:CDS | 50.0% | |
| TCTTTCGCACGCAACTACAG+CGG | - | chr2_1:73701069-73701088 | Msa0223980:CDS | 50.0% | |
| CATGACAAACCAGAGGCAAG+AGG | - | chr2_1:73701677-73701696 | Msa0223980:intron | 50.0% | |
| TTTGTCTTGCCTCTTGCCTC+TGG | + | chr2_1:73701689-73701708 | Msa0223990:intron | 50.0% | |
| !!! | TCCATGGCGGATTTTATCCG+CGG | + | chr2_1:73702003-73702022 | Msa0223990:intron | 50.0% |
| ACACGGAGCGGATACCTTAA+TGG | - | chr2_1:73702022-73702041 | Msa0223980:intron | 50.0% | |
| !! | TTAATGGTATCGACACCCCG+CGG | - | chr2_1:73702109-73702128 | Msa0223980:intron | 50.0% |
| !! | ATAGCGGGTATGGATATCCG+CGG | + | chr2_1:73702129-73702148 | Msa0223990:intron | 50.0% |
| ! | CGGATAATCCGCGGATTTTG+AGG | + | chr2_1:73702544-73702563 | Msa0223990:intron | 50.0% |
| ! | TCCGCGGATTATCCGCTAAA+CGG | - | chr2_1:73702549-73702568 | Msa0223980:intron | 50.0% |
| ! | TCCGTTTAGCGGATAATCCG+CGG | + | chr2_1:73702553-73702572 | Msa0223990:intron | 50.0% |
| AACGGATATCCGCACGGATA+TGG | - | chr2_1:73702567-73702586 | Msa0223980:intron | 50.0% | |
| ATATCCGCACGGATATGGAC+AGG | - | chr2_1:73702572-73702591 | Msa0223980:intron | 50.0% | |
| TATCCGCACGGATATGGACA+GGG | - | chr2_1:73702573-73702592 | Msa0223980:intron | 50.0% | |
| !! | TAGGAATTGACTCGCGCACA+AGG | - | chr2_1:73702951-73702970 | Msa0223980:intron | 50.0% |
| TCTTCTTCCAATGGAGGCAG+TGG | - | chr2_1:73703574-73703593 | Msa0223980:intron | 50.0% | |
| CATAATTGACGGCGTGATGG+CGG | + | chr2_1:73703628-73703647 | Msa0223990:intron | 50.0% | |
| GTGCATAATTGACGGCGTGA+TGG | + | chr2_1:73703631-73703650 | Msa0223990:intron | 50.0% | |
| GCATCATTGGCCACTGTTTC+AGG | + | chr2_1:73704122-73704141 | Msa0223990:intron | 50.0% | |
| ! | GGTGTCATCAACCAAGGCTT+TGG | - | chr2_1:73704191-73704210 | Msa0223980:intron | 50.0% |
| TCAGGACACAACAGCCCTAA+TGG | + | chr2_1:73704251-73704270 | Msa0223990:CDS | 50.0% | |
| !! | AGCGGAGGTACTATTCGCGA+CGG | - | chr2_1:73700806-73700825 | Msa0223980:CDS | 55.0% |
| GTACTATTCGCGACGGCAGT+TGG | - | chr2_1:73700813-73700832 | Msa0223980:CDS | 55.0% | |
| GGCAAAAAAATCCGCACCCG+TGG | - | chr2_1:73701973-73701992 | Msa0223980:intron | 55.0% | |
| TCCGCGGATAAAATCCGCCA+TGG | - | chr2_1:73701999-73702018 | Msa0223980:intron | 55.0% | |
| ! | TAGCGGGTATGGATATCCGC+GGG | + | chr2_1:73702128-73702147 | Msa0223990:intron | 55.0% |
| !!! | GCGGATTTTGAGGTATCCGC+GGG | + | chr2_1:73702534-73702553 | Msa0223990:intron | 55.0% |
| !!! | CGCGGATTTTGAGGTATCCG+CGG | + | chr2_1:73702535-73702554 | Msa0223990:intron | 55.0% |
| CGCGGATACCTCAAAATCCG+CGG | - | chr2_1:73702533-73702552 | Msa0223980:intron | 55.0% | |
| CCGTGCGGATATCCGTTTAG+CGG | + | chr2_1:73702564-73702583 | Msa0223990:intron | 55.0% | |
| CCGCTAAACGGATATCCGCA+CGG | - | chr2_1:73702561-73702580 | Msa0223980:intron | 55.0% | |
| GTACCCTGTCCATATCCGTG+CGG | + | chr2_1:73702579-73702598 | Msa0223990:intron | 55.0% | |
| GCACGGATATGGACAGGGTA+CGG | - | chr2_1:73702578-73702597 | Msa0223980:intron | 55.0% | |
| GATATCCGTGTCTGCTCCGT+TGG | + | chr2_1:73702617-73702636 | Msa0223990:intron | 55.0% | |
| ! | TTGACTCGCGCACAAGGTTC+TGG | - | chr2_1:73702957-73702976 | Msa0223980:intron | 55.0% |
| TCTTCCAATGGAGGCAGTGG+CGG | - | chr2_1:73703577-73703596 | Msa0223980:intron | 55.0% | |
| TGGCCATGTGCCCCTAACAA+AGG | - | chr2_1:73704008-73704027 | Msa0223980:intron | 55.0% | |
| GGACCAGCTGGAAGAGACAA+TGG | - | chr2_1:73704077-73704096 | Msa0223980:intron | 55.0% | |
| !! | GTGCACGGTGTCATCAACCA+AGG | - | chr2_1:73704185-73704204 | Msa0223980:intron | 55.0% |
| CTATTCGCGACGGCAGTTGG+CGG | - | chr2_1:73700816-73700835 | Msa0223980:CDS | 60.0% | |
| AATCCGCCATGGACACGGAG+CGG | - | chr2_1:73702010-73702029 | Msa0223980:intron | 60.0% | |
| TATCCGCTCCGTGTCCATGG+CGG | + | chr2_1:73702016-73702035 | Msa0223990:intron | 60.0% | |
| AGGTATCCGCTCCGTGTCCA+TGG | + | chr2_1:73702019-73702038 | Msa0223990:intron | 60.0% | |
| AGCGGGTATGGATATCCGCG+GGG | + | chr2_1:73702127-73702146 | Msa0223990:intron | 60.0% | |
| TCCGCACCCGTGGATATCCG+CGG | - | chr2_1:73701983-73702002 | Msa0223980:intron | 65.0% | |
| TCCGCGGATATCCACGGGTG+CGG | + | chr2_1:73701987-73702006 | Msa0223990:intron | 65.0% | |
| GCTGGCGCAGCTACCCACGA+CGG | - | chr2_1:73700840-73700859 | Msa0223980:CDS | 70.0% | |
| GGCTCCGCCACTGCCTCCAT+TGG | + | chr2_1:73703584-73703603 | Msa0223990:intron | 70.0% | |
| ! | GCGACGGCAGTTGGCGGCGC+TGG | - | chr2_1:73700822-73700841 | Msa0223980:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 73700767 | 73704280 | 73700767 | ID=Msa0223980;Name=Msa0223980 |
| chr2_1 | mRNA | 73700767 | 73704280 | 73700767 | ID=Msa0223980-mRNA-1;Parent=Msa0223980;Name=Msa0223980-mRNA-1;_AED=0.53;_eAED=0.53;_QI=0|0|0|0.5|1|1|2|0|127 |
| chr2_1 | exon | 73704235 | 73704280 | 73704235 | ID=Msa0223980-mRNA-1:exon:21726;Parent=Msa0223980-mRNA-1 |
| chr2_1 | exon | 73700767 | 73701104 | 73700767 | ID=Msa0223980-mRNA-1:exon:21725;Parent=Msa0223980-mRNA-1 |
| chr2_1 | CDS | 73704235 | 73704280 | 73704235 | ID=Msa0223980-mRNA-1:cds;Parent=Msa0223980-mRNA-1 |
| chr2_1 | CDS | 73700767 | 73701104 | 73700767 | ID=Msa0223980-mRNA-1:cds;Parent=Msa0223980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
