Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0224230 | XP_003597597.2 | 94.048 | 420 | 20 | 3 | 22 | 437 | 50 | 468 | 0.0 | 808 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0224230 | sp|Q8H1F5|IDD7_ARATH | 50.363 | 413 | 149 | 13 | 28 | 424 | 73 | 445 | 1.79e-112 | 341 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0224230 | G7IUH6 | 94.048 | 420 | 20 | 3 | 22 | 437 | 50 | 468 | 0.0 | 808 |
Gene ID | Type | Classification |
---|---|---|
Msa0224230 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0224230 | Msa0265500 | 0.868194 | 7.825539e-66 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0224230 | MtrunA17_Chr2g0330171 | 94.048 | 420 | 20 | 3 | 22 | 437 | 50 | 468 | 0.0 | 808 |
Msa0224230 | MtrunA17_Chr8g0342421 | 54.008 | 524 | 114 | 17 | 1 | 419 | 1 | 502 | 3.96e-155 | 449 |
Msa0224230 | MtrunA17_Chr1g0151351 | 49.886 | 439 | 163 | 14 | 22 | 434 | 45 | 452 | 1.18e-125 | 372 |
Msa0224230 | MtrunA17_Chr7g0263941 | 62.500 | 288 | 88 | 5 | 22 | 300 | 38 | 314 | 5.02e-116 | 345 |
Msa0224230 | MtrunA17_Chr1g0191991 | 59.016 | 305 | 72 | 5 | 22 | 292 | 67 | 352 | 7.18e-112 | 339 |
Msa0224230 | MtrunA17_Chr1g0181381 | 53.779 | 344 | 94 | 9 | 16 | 295 | 36 | 378 | 5.55e-109 | 330 |
Msa0224230 | MtrunA17_Chr7g0268961 | 56.949 | 295 | 105 | 3 | 20 | 292 | 24 | 318 | 8.05e-109 | 330 |
Msa0224230 | MtrunA17_Chr1g0162971 | 54.286 | 315 | 91 | 4 | 28 | 289 | 51 | 365 | 2.15e-107 | 325 |
Msa0224230 | MtrunA17_Chr8g0373541 | 86.250 | 160 | 22 | 0 | 22 | 181 | 37 | 196 | 1.74e-106 | 325 |
Msa0224230 | MtrunA17_Chr1g0185121 | 53.143 | 350 | 125 | 11 | 7 | 330 | 33 | 369 | 1.94e-106 | 322 |
Msa0224230 | MtrunA17_Chr4g0040571 | 86.875 | 160 | 21 | 0 | 22 | 181 | 43 | 202 | 1.82e-105 | 322 |
Msa0224230 | MtrunA17_Chr1g0210821 | 88.889 | 153 | 17 | 0 | 28 | 180 | 54 | 206 | 9.87e-104 | 319 |
Msa0224230 | MtrunA17_Chr1g0199101 | 84.146 | 164 | 26 | 0 | 15 | 178 | 44 | 207 | 2.75e-103 | 317 |
Msa0224230 | MtrunA17_Chr1g0163001 | 81.065 | 169 | 32 | 0 | 12 | 180 | 37 | 205 | 3.35e-102 | 314 |
Msa0224230 | MtrunA17_Chr4g0029521 | 41.737 | 472 | 191 | 15 | 22 | 429 | 42 | 493 | 5.44e-102 | 312 |
Msa0224230 | MtrunA17_Chr2g0326381 | 82.390 | 159 | 27 | 1 | 23 | 180 | 37 | 195 | 7.55e-97 | 296 |
Msa0224230 | MtrunA17_Chr3g0141431 | 76.623 | 154 | 35 | 1 | 22 | 174 | 26 | 179 | 7.82e-90 | 278 |
Msa0224230 | MtrunA17_Chr2g0324991 | 89.313 | 131 | 14 | 0 | 29 | 159 | 3 | 133 | 1.09e-87 | 263 |
Msa0224230 | MtrunA17_Chr6g0479921 | 65.068 | 146 | 50 | 1 | 28 | 172 | 39 | 184 | 2.38e-69 | 227 |
Msa0224230 | MtrunA17_Chr8g0375521 | 65.068 | 146 | 49 | 2 | 28 | 171 | 37 | 182 | 2.83e-68 | 223 |
Msa0224230 | MtrunA17_Chr3g0123941 | 35.256 | 156 | 93 | 4 | 23 | 170 | 113 | 268 | 2.26e-23 | 100 |
Msa0224230 | MtrunA17_Chr1g0200421 | 35.099 | 151 | 86 | 3 | 32 | 170 | 236 | 386 | 2.44e-23 | 102 |
Msa0224230 | MtrunA17_Chr2g0320341 | 32.749 | 171 | 94 | 4 | 32 | 181 | 229 | 399 | 9.53e-23 | 99.8 |
Msa0224230 | MtrunA17_Chr8g0382121 | 33.742 | 163 | 95 | 6 | 16 | 167 | 96 | 256 | 9.40e-22 | 95.5 |
Msa0224230 | MtrunA17_Chr5g0422571 | 37.423 | 163 | 87 | 8 | 26 | 175 | 91 | 251 | 6.45e-21 | 92.4 |
Msa0224230 | MtrunA17_Chr8g0352011 | 31.034 | 174 | 108 | 5 | 6 | 170 | 140 | 310 | 9.28e-20 | 90.1 |
Msa0224230 | MtrunA17_Chr7g0258011 | 32.716 | 162 | 89 | 6 | 34 | 177 | 176 | 335 | 1.14e-19 | 89.7 |
Msa0224230 | MtrunA17_Chr1g0198651 | 35.172 | 145 | 79 | 6 | 39 | 170 | 107 | 249 | 1.87e-18 | 85.5 |
Msa0224230 | MtrunA17_Chr1g0173841 | 33.333 | 147 | 86 | 5 | 34 | 170 | 215 | 359 | 2.75e-18 | 86.3 |
Msa0224230 | MtrunA17_Chr4g0053341 | 32.450 | 151 | 92 | 4 | 29 | 170 | 69 | 218 | 1.21e-17 | 82.0 |
Msa0224230 | MtrunA17_Chr2g0328921 | 32.877 | 146 | 88 | 4 | 34 | 170 | 138 | 282 | 1.33e-17 | 83.2 |
Msa0224230 | MtrunA17_Chr4g0026521 | 33.333 | 147 | 86 | 5 | 34 | 170 | 118 | 262 | 1.58e-17 | 82.8 |
Msa0224230 | MtrunA17_Chr2g0321291 | 34.694 | 147 | 84 | 6 | 34 | 170 | 133 | 277 | 3.66e-17 | 82.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0224230 | AT1G55110.3 | 50.363 | 413 | 149 | 13 | 28 | 424 | 73 | 445 | 1.82e-113 | 341 |
Msa0224230 | AT1G55110.1 | 50.363 | 413 | 149 | 13 | 28 | 424 | 73 | 445 | 1.82e-113 | 341 |
Msa0224230 | AT1G55110.2 | 50.363 | 413 | 149 | 13 | 28 | 424 | 73 | 445 | 1.82e-113 | 341 |
Msa0224230 | AT3G50700.1 | 82.249 | 169 | 30 | 0 | 22 | 190 | 38 | 206 | 1.60e-106 | 323 |
Msa0224230 | AT5G66730.1 | 84.242 | 165 | 26 | 0 | 16 | 180 | 30 | 194 | 1.68e-105 | 322 |
Msa0224230 | AT1G03840.1 | 86.792 | 159 | 21 | 0 | 22 | 180 | 45 | 203 | 8.78e-105 | 320 |
Msa0224230 | AT1G03840.2 | 88.235 | 153 | 18 | 0 | 28 | 180 | 49 | 201 | 1.68e-103 | 317 |
Msa0224230 | AT3G13810.6 | 89.172 | 157 | 16 | 1 | 28 | 183 | 61 | 217 | 3.68e-103 | 316 |
Msa0224230 | AT3G13810.6 | 36.782 | 174 | 86 | 8 | 269 | 436 | 339 | 494 | 3.17e-17 | 84.3 |
Msa0224230 | AT3G13810.4 | 89.172 | 157 | 16 | 1 | 28 | 183 | 80 | 236 | 5.49e-103 | 316 |
Msa0224230 | AT3G13810.4 | 36.782 | 174 | 86 | 8 | 269 | 436 | 358 | 513 | 4.24e-17 | 84.0 |
Msa0224230 | AT3G13810.1 | 89.172 | 157 | 16 | 1 | 28 | 183 | 80 | 236 | 5.49e-103 | 316 |
Msa0224230 | AT3G13810.1 | 36.782 | 174 | 86 | 8 | 269 | 436 | 358 | 513 | 4.24e-17 | 84.0 |
Msa0224230 | AT3G13810.5 | 89.172 | 157 | 16 | 1 | 28 | 183 | 75 | 231 | 6.29e-103 | 315 |
Msa0224230 | AT3G13810.5 | 36.782 | 174 | 86 | 8 | 269 | 436 | 353 | 508 | 3.96e-17 | 84.0 |
Msa0224230 | AT3G13810.3 | 89.103 | 156 | 16 | 1 | 29 | 183 | 68 | 223 | 3.99e-102 | 313 |
Msa0224230 | AT3G13810.3 | 36.782 | 174 | 86 | 8 | 269 | 436 | 345 | 500 | 3.84e-17 | 84.0 |
Msa0224230 | AT3G13810.2 | 89.103 | 156 | 16 | 1 | 29 | 183 | 82 | 237 | 5.25e-102 | 313 |
Msa0224230 | AT3G13810.2 | 36.782 | 174 | 86 | 8 | 269 | 436 | 359 | 514 | 3.96e-17 | 84.0 |
Msa0224230 | AT5G44160.1 | 75.269 | 186 | 37 | 1 | 4 | 180 | 14 | 199 | 1.06e-101 | 311 |
Msa0224230 | AT5G44160.2 | 86.928 | 153 | 20 | 0 | 28 | 180 | 8 | 160 | 5.42e-101 | 308 |
Msa0224230 | AT2G02070.2 | 88.000 | 150 | 18 | 0 | 31 | 180 | 65 | 214 | 8.04e-101 | 313 |
Msa0224230 | AT2G02070.1 | 88.000 | 150 | 18 | 0 | 31 | 180 | 65 | 214 | 8.04e-101 | 313 |
Msa0224230 | AT2G02080.1 | 75.429 | 175 | 43 | 0 | 6 | 180 | 42 | 216 | 8.56e-101 | 310 |
Msa0224230 | AT2G02080.4 | 75.429 | 175 | 43 | 0 | 6 | 180 | 42 | 216 | 8.56e-101 | 310 |
Msa0224230 | AT2G02080.5 | 75.429 | 175 | 43 | 0 | 6 | 180 | 42 | 216 | 8.56e-101 | 310 |
Msa0224230 | AT2G02080.3 | 75.429 | 175 | 43 | 0 | 6 | 180 | 42 | 216 | 8.56e-101 | 310 |
Msa0224230 | AT1G14580.1 | 75.706 | 177 | 41 | 1 | 6 | 180 | 39 | 215 | 9.96e-101 | 308 |
Msa0224230 | AT1G14580.2 | 75.706 | 177 | 41 | 1 | 6 | 180 | 39 | 215 | 9.96e-101 | 308 |
Msa0224230 | AT3G45260.2 | 80.814 | 172 | 30 | 2 | 22 | 190 | 43 | 214 | 1.57e-100 | 307 |
Msa0224230 | AT3G45260.1 | 80.814 | 172 | 30 | 2 | 22 | 190 | 43 | 214 | 1.57e-100 | 307 |
Msa0224230 | AT1G14580.3 | 75.706 | 177 | 41 | 1 | 6 | 180 | 53 | 229 | 2.12e-100 | 308 |
Msa0224230 | AT5G60470.2 | 77.907 | 172 | 36 | 2 | 22 | 191 | 48 | 219 | 2.19e-98 | 302 |
Msa0224230 | AT5G60470.3 | 77.907 | 172 | 36 | 2 | 22 | 191 | 44 | 215 | 2.34e-98 | 302 |
Msa0224230 | AT4G02670.2 | 77.095 | 179 | 31 | 3 | 28 | 197 | 65 | 242 | 1.33e-97 | 298 |
Msa0224230 | AT4G02670.1 | 77.095 | 179 | 31 | 3 | 28 | 197 | 63 | 240 | 1.46e-97 | 298 |
Msa0224230 | AT5G60470.1 | 79.394 | 165 | 32 | 2 | 29 | 191 | 46 | 210 | 2.95e-97 | 299 |
Msa0224230 | AT5G03150.1 | 85.065 | 154 | 22 | 1 | 28 | 180 | 63 | 216 | 4.42e-97 | 300 |
Msa0224230 | AT2G02080.6 | 83.453 | 139 | 23 | 0 | 42 | 180 | 1 | 139 | 1.61e-91 | 284 |
Msa0224230 | AT2G02080.2 | 83.453 | 139 | 23 | 0 | 42 | 180 | 1 | 139 | 1.61e-91 | 284 |
Msa0224230 | AT1G68130.1 | 65.753 | 146 | 48 | 2 | 28 | 171 | 51 | 196 | 2.98e-69 | 226 |
Msa0224230 | AT2G01940.1 | 65.541 | 148 | 49 | 2 | 28 | 173 | 54 | 201 | 1.41e-68 | 224 |
Msa0224230 | AT1G25250.1 | 60.366 | 164 | 54 | 3 | 27 | 187 | 19 | 174 | 1.55e-68 | 222 |
Msa0224230 | AT1G25250.3 | 60.736 | 163 | 53 | 3 | 28 | 187 | 43 | 197 | 2.85e-68 | 222 |
Msa0224230 | AT2G01940.3 | 64.430 | 149 | 50 | 3 | 28 | 173 | 54 | 202 | 4.89e-65 | 216 |
Msa0224230 | AT1G68130.2 | 64.545 | 110 | 37 | 2 | 64 | 171 | 1 | 110 | 5.19e-46 | 162 |
Msa0224230 | AT2G01940.2 | 63.393 | 112 | 39 | 2 | 64 | 173 | 1 | 112 | 1.56e-45 | 162 |
Msa0224230 | AT1G25250.2 | 58.268 | 127 | 42 | 3 | 64 | 187 | 1 | 119 | 3.00e-45 | 159 |
Msa0224230 | AT1G34370.3 | 31.282 | 195 | 114 | 5 | 32 | 208 | 19 | 211 | 4.09e-23 | 99.0 |
Msa0224230 | AT1G34370.2 | 31.282 | 195 | 114 | 5 | 32 | 208 | 229 | 421 | 6.63e-23 | 101 |
Msa0224230 | AT1G34370.1 | 31.282 | 195 | 114 | 5 | 32 | 208 | 229 | 421 | 6.63e-23 | 101 |
Msa0224230 | AT5G22890.1 | 32.026 | 153 | 90 | 3 | 32 | 170 | 202 | 354 | 1.60e-21 | 95.9 |
Msa0224230 | AT1G13290.1 | 33.149 | 181 | 105 | 8 | 10 | 178 | 66 | 242 | 6.10e-20 | 90.5 |
Msa0224230 | AT3G20880.1 | 33.562 | 146 | 87 | 4 | 34 | 170 | 243 | 387 | 1.55e-18 | 87.8 |
Msa0224230 | AT1G51220.1 | 32.192 | 146 | 89 | 4 | 34 | 170 | 165 | 309 | 5.39e-18 | 85.1 |
Msa0224230 | AT3G57670.1 | 32.653 | 147 | 87 | 5 | 34 | 170 | 204 | 348 | 9.79e-18 | 85.1 |
Msa0224230 | AT1G08290.1 | 36.765 | 136 | 73 | 6 | 46 | 170 | 179 | 312 | 6.89e-17 | 82.0 |
Msa0224230 | AT1G34790.1 | 32.450 | 151 | 90 | 5 | 30 | 170 | 128 | 276 | 2.83e-16 | 79.7 |
Find 109 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTCTTCTTCTGGATTTCA+TGG | 0.140432 | 2_1:+74049970 | Msa0224230:CDS |
TTCTCTTGTGCCACAGGTTT+TGG | 0.189840 | 2_1:-74048844 | None:intergenic |
AACAACTCTCTCTCTTCTTC+TGG | 0.241809 | 2_1:+74049961 | Msa0224230:CDS |
TTTCATTTCTCATACATATC+TGG | 0.266054 | 2_1:+74050402 | Msa0224230:three_prime_UTR |
GGTATTTGTACTTCTTGTTC+TGG | 0.297642 | 2_1:-74049613 | None:intergenic |
GGAAGTGTAGGACCATTTCT+AGG | 0.313383 | 2_1:-74049721 | None:intergenic |
AGCCTTGGATATCTTGAGTT+TGG | 0.314047 | 2_1:-74049549 | None:intergenic |
TTTGTTGCCATCAGTGTCTT+TGG | 0.324056 | 2_1:-74048531 | None:intergenic |
CCGAATGGTCCCTTCCCTTT+GGG | 0.324607 | 2_1:-74050363 | None:intergenic |
TCCGAATGGTCCCTTCCCTT+TGG | 0.334819 | 2_1:-74050364 | None:intergenic |
GCACTTACAAGAGATTTCTT+AGG | 0.351186 | 2_1:+74050129 | Msa0224230:CDS |
AGAGAGAGTTGTTTATCATT+TGG | 0.355557 | 2_1:-74049951 | None:intergenic |
CACACACCTTAGAAATATTA+TGG | 0.365880 | 2_1:-74050447 | None:intergenic |
CCATGGGAAGGTAATTAGTT+TGG | 0.371243 | 2_1:+74050252 | Msa0224230:exon |
GCATGACCATAATATTTCTA+AGG | 0.371909 | 2_1:+74050441 | Msa0224230:three_prime_UTR |
ACCTCTCCTCAAACTATTCA+AGG | 0.372455 | 2_1:+74049662 | Msa0224230:CDS |
GTAGGACCATTTCTAGGGTT+AGG | 0.377918 | 2_1:-74049715 | None:intergenic |
ACAGTATTTCACATACAAAA+AGG | 0.384761 | 2_1:-74050330 | None:intergenic |
ATCAAAGTTTCAACATGTTA+AGG | 0.397845 | 2_1:+74049590 | Msa0224230:CDS |
ATCCAACCTTGAATAGTTTG+AGG | 0.405976 | 2_1:-74049668 | None:intergenic |
TTGTGTAGGTTGTGGAATTA+CGG | 0.407829 | 2_1:-74049497 | None:intergenic |
AGTGATATCCTCACCATTGC+TGG | 0.409995 | 2_1:+74050171 | Msa0224230:CDS |
TCTAATTTGACTTCTGCATC+TGG | 0.412009 | 2_1:+74047898 | Msa0224230:CDS |
TAGGACCATTTCTAGGGTTA+GGG | 0.414611 | 2_1:-74049714 | None:intergenic |
TGGTGCACACAAGTTGGTTC+TGG | 0.417382 | 2_1:-74048690 | None:intergenic |
TATCCTCACCATTGCTGGTA+TGG | 0.421802 | 2_1:+74050176 | Msa0224230:CDS |
CATGACCCATCAAGAGCCTT+GGG | 0.426349 | 2_1:+74048711 | Msa0224230:CDS |
GTTGAGTGGGACCCACCAAC+AGG | 0.427753 | 2_1:+74049843 | Msa0224230:CDS |
GTTCTTTGCTTCAACTTCCA+TGG | 0.431659 | 2_1:-74048633 | None:intergenic |
TCTGTATTCTCTTGTGCCAC+AGG | 0.435175 | 2_1:-74048850 | None:intergenic |
ATTTGAGTTTATCATGTTGT+TGG | 0.445102 | 2_1:-74049893 | None:intergenic |
GTTTGAGGAGAGGTCAATGT+TGG | 0.446017 | 2_1:-74049653 | None:intergenic |
CTTTCTTCAATGTCAAGCCT+TGG | 0.446505 | 2_1:-74049564 | None:intergenic |
AAGCTATAACTTCAGCTTGT+GGG | 0.447498 | 2_1:-74048503 | None:intergenic |
GAAAACCCTAACCCTAGAAA+TGG | 0.454115 | 2_1:+74049709 | Msa0224230:CDS |
AGTGCTTCTTGATACCAGTT+AGG | 0.454887 | 2_1:-74048737 | None:intergenic |
CCCAAAGGGAAGGGACCATT+CGG | 0.463032 | 2_1:+74050363 | Msa0224230:three_prime_UTR |
CAGAGCCTTCTGTGATGCAT+TGG | 0.469401 | 2_1:+74049456 | Msa0224230:CDS |
TGCATTGTTTCCTCCGGCAC+CGG | 0.471541 | 2_1:-74050109 | None:intergenic |
CCAAGGCTCTTGATGGGTCA+TGG | 0.475409 | 2_1:-74048710 | None:intergenic |
TGTAAGTGCATTGTTTCCTC+CGG | 0.475628 | 2_1:-74050115 | None:intergenic |
CCATGACCCATCAAGAGCCT+TGG | 0.490603 | 2_1:+74048710 | Msa0224230:CDS |
ACCGGCACCGTCATCATCAT+TGG | 0.490777 | 2_1:-74050091 | None:intergenic |
AACAACATGATAAACTCAAA+TGG | 0.493838 | 2_1:+74049895 | Msa0224230:CDS |
AATCTTCAACTTCATAAAAG+AGG | 0.500458 | 2_1:+74048600 | Msa0224230:CDS |
ATCCTCACCATTGCTGGTAT+GGG | 0.502220 | 2_1:+74050177 | Msa0224230:CDS |
GCTTGATGATCGGAGTTGGA+AGG | 0.505394 | 2_1:-74050213 | None:intergenic |
GATGATGACGGTGCCGGTGC+CGG | 0.516820 | 2_1:+74050096 | Msa0224230:CDS |
GTTACAGAAAGCAGCTCAGA+TGG | 0.517581 | 2_1:+74049795 | Msa0224230:CDS |
CTTGATGATCGGAGTTGGAA+GGG | 0.517775 | 2_1:-74050212 | None:intergenic |
ATAGTTATACCTTGAGAAGA+GGG | 0.521705 | 2_1:-74048886 | None:intergenic |
ATATGTGAGATCTGTAACAA+AGG | 0.526520 | 2_1:+74048561 | Msa0224230:CDS |
AAGAAGTACAAATACCCTCT+TGG | 0.528888 | 2_1:+74049620 | Msa0224230:CDS |
CTGTCACTATTCTTCCCAAA+GGG | 0.529091 | 2_1:+74050349 | Msa0224230:three_prime_UTR |
ACAACAATCATTAGTTGTTG+AGG | 0.530940 | 2_1:+74047867 | Msa0224230:CDS |
AGTATGCAGTTCAATCAGAC+TGG | 0.532991 | 2_1:+74048811 | Msa0224230:CDS |
TTTGGAGATTGTTCATGTTG+TGG | 0.533091 | 2_1:-74049531 | None:intergenic |
AAAGAACAAGCAATGAGATA+AGG | 0.533182 | 2_1:+74048649 | Msa0224230:CDS |
CTCCTCAAACTATTCAAGGT+TGG | 0.534048 | 2_1:+74049666 | Msa0224230:CDS |
TGAGGTGAAGCTGCAGATGC+TGG | 0.537360 | 2_1:-74049754 | None:intergenic |
TGAGTTTATCATGTTGTTGG+TGG | 0.541113 | 2_1:-74049890 | None:intergenic |
GCAGATGCTGGTTGGTAGGA+TGG | 0.542786 | 2_1:-74049742 | None:intergenic |
TTGGTGGGTCCCACTCAACA+TGG | 0.546559 | 2_1:-74049839 | None:intergenic |
CCAAACTAATTACCTTCCCA+TGG | 0.548476 | 2_1:-74050252 | None:intergenic |
GTTTGCTTGATGATCGGAGT+TGG | 0.548511 | 2_1:-74050217 | None:intergenic |
CAACATGGACTGAGATGAGC+TGG | 0.548999 | 2_1:-74049824 | None:intergenic |
CACTATTCTTCCCAAAGGGA+AGG | 0.550681 | 2_1:+74050353 | Msa0224230:three_prime_UTR |
TATCATTTGGTCTTCACATG+AGG | 0.559455 | 2_1:-74049938 | None:intergenic |
GGAATGGTTTGCTTGATGAT+CGG | 0.561157 | 2_1:-74050223 | None:intergenic |
TATAGTTATACCTTGAGAAG+AGG | 0.562344 | 2_1:-74048887 | None:intergenic |
GAACATAATATCAATCATGA+TGG | 0.565329 | 2_1:+74050042 | Msa0224230:CDS |
GAAAGCACGGTGAGAAGAAG+TGG | 0.566601 | 2_1:+74048766 | Msa0224230:CDS |
GAAGTGTAGGACCATTTCTA+GGG | 0.573649 | 2_1:-74049720 | None:intergenic |
ACCTTGAATAGTTTGAGGAG+AGG | 0.575888 | 2_1:-74049663 | None:intergenic |
TCATCTCAGTCCATGTTGAG+TGG | 0.578988 | 2_1:+74049829 | Msa0224230:CDS |
ACTGTCACTATTCTTCCCAA+AGG | 0.580873 | 2_1:+74050348 | Msa0224230:three_prime_UTR |
CTCAGCCAATGCATCACAGA+AGG | 0.582209 | 2_1:-74049461 | None:intergenic |
TAGACACGTGACCCTGTTGG+TGG | 0.583962 | 2_1:-74049855 | None:intergenic |
CTTCTGTGATGCATTGGCTG+AGG | 0.585782 | 2_1:+74049462 | Msa0224230:CDS |
GGCACCGTCATCATCATTGG+TGG | 0.585980 | 2_1:-74050088 | None:intergenic |
AAAGAGGACACAATTTGCCA+TGG | 0.587343 | 2_1:+74048616 | Msa0224230:CDS |
CATCTCAGTCCATGTTGAGT+GGG | 0.587878 | 2_1:+74049830 | Msa0224230:CDS |
CTCCAAACTCAAGATATCCA+AGG | 0.596098 | 2_1:+74049547 | Msa0224230:CDS |
GCAACTTCCCATACCAGCAA+TGG | 0.602937 | 2_1:-74050184 | None:intergenic |
AAAGCTATAACTTCAGCTTG+TGG | 0.603171 | 2_1:-74048504 | None:intergenic |
AAGCACTTCTGCAGAAAGCA+CGG | 0.603251 | 2_1:+74048753 | Msa0224230:CDS |
TTGGATTGACATAGCCAAGA+GGG | 0.612593 | 2_1:-74049634 | None:intergenic |
GATGACGGTGCCGGTGCCGG+AGG | 0.615538 | 2_1:+74050099 | Msa0224230:CDS |
ACTATTCTTCCCAAAGGGAA+GGG | 0.619107 | 2_1:+74050354 | Msa0224230:three_prime_UTR |
TTCCCATACCAGCAATGGTG+AGG | 0.621943 | 2_1:-74050179 | None:intergenic |
CAATAGACACGTGACCCTGT+TGG | 0.624582 | 2_1:-74049858 | None:intergenic |
ACCAATGATGATGACGGTGC+CGG | 0.625084 | 2_1:+74050090 | Msa0224230:CDS |
ACTGTGGAACCCTCTTCTCA+AGG | 0.626939 | 2_1:+74048877 | Msa0224230:CDS |
AGCTGCAGATGCTGGTTGGT+AGG | 0.631564 | 2_1:-74049746 | None:intergenic |
TCAACCACCAATGATGATGA+CGG | 0.633146 | 2_1:+74050084 | Msa0224230:CDS |
GGTTGGTAGGATGGAAGTGT+AGG | 0.641310 | 2_1:-74049733 | None:intergenic |
TTACAGAAAGCAGCTCAGAT+GGG | 0.645481 | 2_1:+74049796 | Msa0224230:CDS |
GTGAAGCTGCAGATGCTGGT+TGG | 0.647374 | 2_1:-74049750 | None:intergenic |
AGACACGTGACCCTGTTGGT+GGG | 0.651658 | 2_1:-74049854 | None:intergenic |
TGACCCATCAAGAGCCTTGG+GGG | 0.652313 | 2_1:+74048713 | Msa0224230:CDS |
TTTGTCACCAAAGACACTGA+TGG | 0.656547 | 2_1:+74048524 | Msa0224230:CDS |
AGGATATCACTATCAGAGAG+TGG | 0.656639 | 2_1:-74050159 | None:intergenic |
GGGTCATGGTGCACACAAGT+TGG | 0.674016 | 2_1:-74048696 | None:intergenic |
TTGAGTGGGACCCACCAACA+GGG | 0.675919 | 2_1:+74049844 | Msa0224230:CDS |
AAAGCTCACTCCAAAACCTG+TGG | 0.698299 | 2_1:+74048834 | Msa0224230:CDS |
AGAGAATACAGATGTGACTG+TGG | 0.700052 | 2_1:+74048861 | Msa0224230:CDS |
ATGACCCATCAAGAGCCTTG+GGG | 0.705499 | 2_1:+74048712 | Msa0224230:CDS |
GTTGGATTGACATAGCCAAG+AGG | 0.725600 | 2_1:-74049635 | None:intergenic |
AATGCTGTAGCTGACATGTG+AGG | 0.760209 | 2_1:-74049772 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTATTAATAACTTAGTTT+AGG | - | chr2_1:74048939-74048958 | None:intergenic | 10.0% |
!!! | TTAAATATTATATGATTTTC+AGG | + | chr2_1:74049413-74049432 | Msa0224230:intron | 10.0% |
!! | ATCTTAATTGTTATAAATTG+TGG | + | chr2_1:74048093-74048112 | Msa0224230:intron | 15.0% |
!!! | CATATTTTGTTTATCTAAAT+TGG | + | chr2_1:74048432-74048451 | Msa0224230:intron | 15.0% |
!! | TGAAGACAAAAAAAAAAAAA+AGG | - | chr2_1:74050290-74050309 | None:intergenic | 15.0% |
!! | ATTAAGATGAAAAGAAAAGA+TGG | - | chr2_1:74048081-74048100 | None:intergenic | 20.0% |
!! | GAAAAATATGAAGAAAAACA+TGG | + | chr2_1:74048159-74048178 | Msa0224230:intron | 20.0% |
!! | TATACTATTATCAACTTGAA+GGG | - | chr2_1:74048981-74049000 | None:intergenic | 20.0% |
!!! | CAAACATTTTTTAAAGAAAG+TGG | + | chr2_1:74049049-74049068 | Msa0224230:intron | 20.0% |
!!! | GAAAGTGGAAATTTTTAAAA+TGG | + | chr2_1:74049064-74049083 | Msa0224230:intron | 20.0% |
!!! | TTTTTAATGTACTATCTCTT+TGG | + | chr2_1:74049099-74049118 | Msa0224230:intron | 20.0% |
!!! | AATATTATATGATTTTCAGG+AGG | + | chr2_1:74049416-74049435 | Msa0224230:intron | 20.0% |
!!! | ATATTATATGATTTTCAGGA+GGG | + | chr2_1:74049417-74049436 | Msa0224230:intron | 20.0% |
!! | CATATTTTTCCACAATATCA+TGG | - | chr2_1:74048149-74048168 | None:intergenic | 25.0% |
! | TTTAACATGTTATGCTTGTT+TGG | + | chr2_1:74048280-74048299 | Msa0224230:intron | 25.0% |
! | AATCTTCAACTTCATAAAAG+AGG | + | chr2_1:74048600-74048619 | Msa0224230:CDS | 25.0% |
! | GTATACTATTATCAACTTGA+AGG | - | chr2_1:74048982-74049001 | None:intergenic | 25.0% |
! | ATCAAAGTTTCAACATGTTA+AGG | + | chr2_1:74049590-74049609 | Msa0224230:CDS | 25.0% |
!! | ATTTGAGTTTATCATGTTGT+TGG | - | chr2_1:74049896-74049915 | None:intergenic | 25.0% |
! | AACAACATGATAAACTCAAA+TGG | + | chr2_1:74049895-74049914 | Msa0224230:CDS | 25.0% |
! | GAACATAATATCAATCATGA+TGG | + | chr2_1:74050042-74050061 | Msa0224230:CDS | 25.0% |
! | ACAGTATTTCACATACAAAA+AGG | - | chr2_1:74050333-74050352 | None:intergenic | 25.0% |
! | GAAAAATATTTGATTCCGAA+TGG | - | chr2_1:74050381-74050400 | None:intergenic | 25.0% |
! | TTTCATTTCTCATACATATC+TGG | + | chr2_1:74050402-74050421 | Msa0224230:three_prime_UTR | 25.0% |
ACAACAATCATTAGTTGTTG+AGG | + | chr2_1:74047867-74047886 | Msa0224230:CDS | 30.0% | |
AGAACTTAAGAAAATGAACC+TGG | - | chr2_1:74048057-74048076 | None:intergenic | 30.0% | |
ATAAATTGTGGTTATAGTCG+CGG | + | chr2_1:74048105-74048124 | Msa0224230:intron | 30.0% | |
TTAATTAGATGTCATTGCAG+TGG | - | chr2_1:74048214-74048233 | None:intergenic | 30.0% | |
GCAATGACATCTAATTAAAC+CGG | + | chr2_1:74048216-74048235 | Msa0224230:intron | 30.0% | |
ATATGTGAGATCTGTAACAA+AGG | + | chr2_1:74048561-74048580 | Msa0224230:CDS | 30.0% | |
AAAGAACAAGCAATGAGATA+AGG | + | chr2_1:74048649-74048668 | Msa0224230:CDS | 30.0% | |
ATAGTTATACCTTGAGAAGA+GGG | - | chr2_1:74048889-74048908 | None:intergenic | 30.0% | |
TATAGTTATACCTTGAGAAG+AGG | - | chr2_1:74048890-74048909 | None:intergenic | 30.0% | |
ACTTGAAGGGATAAAATATG+TGG | - | chr2_1:74048968-74048987 | None:intergenic | 30.0% | |
TGTACTATCTCTTTGGTTAT+CGG | + | chr2_1:74049106-74049125 | Msa0224230:intron | 30.0% | |
CAACAAAATCATACTAACAC+CGG | + | chr2_1:74049226-74049245 | Msa0224230:intron | 30.0% | |
! | TGGGATAAATGTGAATTTTC+CGG | - | chr2_1:74049248-74049267 | None:intergenic | 30.0% |
ACTTAGTATTCTCAAGTCTA+AGG | + | chr2_1:74049274-74049293 | Msa0224230:intron | 30.0% | |
GAATATTTCTTGGCTGTTAT+AGG | + | chr2_1:74049343-74049362 | Msa0224230:intron | 30.0% | |
AAAAATACAAAAGTGAGGTG+AGG | - | chr2_1:74049383-74049402 | None:intergenic | 30.0% | |
CACACAAAAATACAAAAGTG+AGG | - | chr2_1:74049388-74049407 | None:intergenic | 30.0% | |
AGAGAGAGTTGTTTATCATT+TGG | - | chr2_1:74049954-74049973 | None:intergenic | 30.0% | |
! | ATTTCATGGAACTTCTTTTG+AGG | + | chr2_1:74049984-74050003 | Msa0224230:CDS | 30.0% |
! | GCATGACCATAATATTTCTA+AGG | + | chr2_1:74050441-74050460 | Msa0224230:three_prime_UTR | 30.0% |
CACACACCTTAGAAATATTA+TGG | - | chr2_1:74050450-74050469 | None:intergenic | 30.0% | |
! | TCTAATTTGACTTCTGCATC+TGG | + | chr2_1:74047898-74047917 | Msa0224230:CDS | 35.0% |
! | AGTTGATGCAAAATTCTCTC+AGG | + | chr2_1:74047957-74047976 | Msa0224230:intron | 35.0% |
! | AGGTTTCTTCTTTTCTTAGC+TGG | - | chr2_1:74048024-74048043 | None:intergenic | 35.0% |
AAGAAAAGAAGAAACCTTCC+TGG | + | chr2_1:74048027-74048046 | Msa0224230:intron | 35.0% | |
! | GAAGAAAAACATGGTTGATG+CGG | + | chr2_1:74048168-74048187 | Msa0224230:intron | 35.0% |
! | GTTATGCTTGTTTGGAATCA+TGG | + | chr2_1:74048288-74048307 | Msa0224230:intron | 35.0% |
AAGCTATAACTTCAGCTTGT+GGG | - | chr2_1:74048506-74048525 | None:intergenic | 35.0% | |
AAAGCTATAACTTCAGCTTG+TGG | - | chr2_1:74048507-74048526 | None:intergenic | 35.0% | |
ATAGTGCATGCTTAGATTGA+TGG | + | chr2_1:74049132-74049151 | Msa0224230:intron | 35.0% | |
GAGAATACTAAGTGCATGTT+GGG | - | chr2_1:74049267-74049286 | None:intergenic | 35.0% | |
TGAGAATACTAAGTGCATGT+TGG | - | chr2_1:74049268-74049287 | None:intergenic | 35.0% | |
TGTGAAACAGAAAATGAGAG+AGG | + | chr2_1:74049318-74049337 | Msa0224230:intron | 35.0% | |
GTGAAACAGAAAATGAGAGA+GGG | + | chr2_1:74049319-74049338 | Msa0224230:intron | 35.0% | |
TTGTGTAGGTTGTGGAATTA+CGG | - | chr2_1:74049500-74049519 | None:intergenic | 35.0% | |
!! | GAATTTTGTTGTGTAGGTTG+TGG | - | chr2_1:74049508-74049527 | None:intergenic | 35.0% |
!! | TGGTGAGAATTTTGTTGTGT+AGG | - | chr2_1:74049514-74049533 | None:intergenic | 35.0% |
TTTGGAGATTGTTCATGTTG+TGG | - | chr2_1:74049534-74049553 | None:intergenic | 35.0% | |
GGTATTTGTACTTCTTGTTC+TGG | - | chr2_1:74049616-74049635 | None:intergenic | 35.0% | |
! | AAGAAGTACAAATACCCTCT+TGG | + | chr2_1:74049620-74049639 | Msa0224230:CDS | 35.0% |
ATCCAACCTTGAATAGTTTG+AGG | - | chr2_1:74049671-74049690 | None:intergenic | 35.0% | |
! | TAGGGTTAGGGTTTTCATAA+AGG | - | chr2_1:74049705-74049724 | None:intergenic | 35.0% |
TGAGTTTATCATGTTGTTGG+TGG | - | chr2_1:74049893-74049912 | None:intergenic | 35.0% | |
! | TATCATTTGGTCTTCACATG+AGG | - | chr2_1:74049941-74049960 | None:intergenic | 35.0% |
!! | TCTTTTGAGGATACTTTTGC+TGG | + | chr2_1:74049997-74050016 | Msa0224230:CDS | 35.0% |
GCACTTACAAGAGATTTCTT+AGG | + | chr2_1:74050129-74050148 | Msa0224230:CDS | 35.0% | |
AAACCATTCCCAAAAACCAT+GGG | + | chr2_1:74050236-74050255 | Msa0224230:CDS | 35.0% | |
! | ATTACCTTCCCATGGTTTTT+GGG | - | chr2_1:74050247-74050266 | None:intergenic | 35.0% |
! | AATTACCTTCCCATGGTTTT+TGG | - | chr2_1:74050248-74050267 | None:intergenic | 35.0% |
GAAGCTAGTGCTAATTCTTC+TGG | + | chr2_1:74047922-74047941 | Msa0224230:intron | 40.0% | |
CGCTATGAACCATGATATTG+TGG | + | chr2_1:74048137-74048156 | Msa0224230:intron | 40.0% | |
TGGCATCACAACTACAATTG+CGG | - | chr2_1:74048194-74048213 | None:intergenic | 40.0% | |
CTCGAGCTTCAACAAAATCA+CGG | - | chr2_1:74048336-74048355 | None:intergenic | 40.0% | |
AATATGAATGCGCGCATGTT+TGG | - | chr2_1:74048418-74048437 | None:intergenic | 40.0% | |
TTTGTCACCAAAGACACTGA+TGG | + | chr2_1:74048524-74048543 | Msa0224230:CDS | 40.0% | |
TTTGTTGCCATCAGTGTCTT+TGG | - | chr2_1:74048534-74048553 | None:intergenic | 40.0% | |
AAAGAGGACACAATTTGCCA+TGG | + | chr2_1:74048616-74048635 | Msa0224230:CDS | 40.0% | |
GTTCTTTGCTTCAACTTCCA+TGG | - | chr2_1:74048636-74048655 | None:intergenic | 40.0% | |
AGTGCTTCTTGATACCAGTT+AGG | - | chr2_1:74048740-74048759 | None:intergenic | 40.0% | |
AGTATGCAGTTCAATCAGAC+TGG | + | chr2_1:74048811-74048830 | Msa0224230:CDS | 40.0% | |
AGAGAATACAGATGTGACTG+TGG | + | chr2_1:74048861-74048880 | Msa0224230:CDS | 40.0% | |
GAGAGAGGGTGAATATTTCT+TGG | + | chr2_1:74049333-74049352 | Msa0224230:intron | 40.0% | |
CTCCAAACTCAAGATATCCA+AGG | + | chr2_1:74049547-74049566 | Msa0224230:CDS | 40.0% | |
AGCCTTGGATATCTTGAGTT+TGG | - | chr2_1:74049552-74049571 | None:intergenic | 40.0% | |
CTTTCTTCAATGTCAAGCCT+TGG | - | chr2_1:74049567-74049586 | None:intergenic | 40.0% | |
TTGGATTGACATAGCCAAGA+GGG | - | chr2_1:74049637-74049656 | None:intergenic | 40.0% | |
ACCTCTCCTCAAACTATTCA+AGG | + | chr2_1:74049662-74049681 | Msa0224230:CDS | 40.0% | |
ACCTTGAATAGTTTGAGGAG+AGG | - | chr2_1:74049666-74049685 | None:intergenic | 40.0% | |
CTCCTCAAACTATTCAAGGT+TGG | + | chr2_1:74049666-74049685 | Msa0224230:CDS | 40.0% | |
GAAAACCCTAACCCTAGAAA+TGG | + | chr2_1:74049709-74049728 | Msa0224230:CDS | 40.0% | |
!! | TAGGACCATTTCTAGGGTTA+GGG | - | chr2_1:74049717-74049736 | None:intergenic | 40.0% |
GAAGTGTAGGACCATTTCTA+GGG | - | chr2_1:74049723-74049742 | None:intergenic | 40.0% | |
TTACAGAAAGCAGCTCAGAT+GGG | + | chr2_1:74049796-74049815 | Msa0224230:CDS | 40.0% | |
AACAACTCTCTCTCTTCTTC+TGG | + | chr2_1:74049961-74049980 | Msa0224230:CDS | 40.0% | |
CTCTCTTCTTCTGGATTTCA+TGG | + | chr2_1:74049970-74049989 | Msa0224230:CDS | 40.0% | |
! | TCAACCACCAATGATGATGA+CGG | + | chr2_1:74050084-74050103 | Msa0224230:CDS | 40.0% |
TGTAAGTGCATTGTTTCCTC+CGG | - | chr2_1:74050118-74050137 | None:intergenic | 40.0% | |
AGGATATCACTATCAGAGAG+TGG | - | chr2_1:74050162-74050181 | None:intergenic | 40.0% | |
!! | GGAATGGTTTGCTTGATGAT+CGG | - | chr2_1:74050226-74050245 | None:intergenic | 40.0% |
CAAACCATTCCCAAAAACCA+TGG | + | chr2_1:74050235-74050254 | Msa0224230:CDS | 40.0% | |
CCAAACTAATTACCTTCCCA+TGG | - | chr2_1:74050255-74050274 | None:intergenic | 40.0% | |
CCATGGGAAGGTAATTAGTT+TGG | + | chr2_1:74050252-74050271 | Msa0224230:exon | 40.0% | |
ACTGTCACTATTCTTCCCAA+AGG | + | chr2_1:74050348-74050367 | Msa0224230:three_prime_UTR | 40.0% | |
CTGTCACTATTCTTCCCAAA+GGG | + | chr2_1:74050349-74050368 | Msa0224230:three_prime_UTR | 40.0% | |
ACTATTCTTCCCAAAGGGAA+GGG | + | chr2_1:74050354-74050373 | Msa0224230:three_prime_UTR | 40.0% | |
GAAAATGAACCTGGATTGCC+AGG | - | chr2_1:74048048-74048067 | None:intergenic | 45.0% | |
CGTTTGCAGCAGCAATATAC+CGG | - | chr2_1:74048238-74048257 | None:intergenic | 45.0% | |
GAGCTTCAACAAAATCACGG+TGG | - | chr2_1:74048333-74048352 | None:intergenic | 45.0% | |
AAGCACTTCTGCAGAAAGCA+CGG | + | chr2_1:74048753-74048772 | Msa0224230:CDS | 45.0% | |
AAAGCTCACTCCAAAACCTG+TGG | + | chr2_1:74048834-74048853 | Msa0224230:CDS | 45.0% | |
! | TTCTCTTGTGCCACAGGTTT+TGG | - | chr2_1:74048847-74048866 | None:intergenic | 45.0% |
TCTGTATTCTCTTGTGCCAC+AGG | - | chr2_1:74048853-74048872 | None:intergenic | 45.0% | |
GTTGGATTGACATAGCCAAG+AGG | - | chr2_1:74049638-74049657 | None:intergenic | 45.0% | |
GTTTGAGGAGAGGTCAATGT+TGG | - | chr2_1:74049656-74049675 | None:intergenic | 45.0% | |
!! | GTAGGACCATTTCTAGGGTT+AGG | - | chr2_1:74049718-74049737 | None:intergenic | 45.0% |
! | GGAAGTGTAGGACCATTTCT+AGG | - | chr2_1:74049724-74049743 | None:intergenic | 45.0% |
AATGCTGTAGCTGACATGTG+AGG | - | chr2_1:74049775-74049794 | None:intergenic | 45.0% | |
GTTACAGAAAGCAGCTCAGA+TGG | + | chr2_1:74049795-74049814 | Msa0224230:CDS | 45.0% | |
TCATCTCAGTCCATGTTGAG+TGG | + | chr2_1:74049829-74049848 | Msa0224230:CDS | 45.0% | |
CATCTCAGTCCATGTTGAGT+GGG | + | chr2_1:74049830-74049849 | Msa0224230:CDS | 45.0% | |
AGTGATATCCTCACCATTGC+TGG | + | chr2_1:74050171-74050190 | Msa0224230:CDS | 45.0% | |
TATCCTCACCATTGCTGGTA+TGG | + | chr2_1:74050176-74050195 | Msa0224230:CDS | 45.0% | |
ATCCTCACCATTGCTGGTAT+GGG | + | chr2_1:74050177-74050196 | Msa0224230:CDS | 45.0% | |
! | CTTGATGATCGGAGTTGGAA+GGG | - | chr2_1:74050215-74050234 | None:intergenic | 45.0% |
! | GTTTGCTTGATGATCGGAGT+TGG | - | chr2_1:74050220-74050239 | None:intergenic | 45.0% |
!! | CTTCCCATGGTTTTTGGGAA+TGG | - | chr2_1:74050242-74050261 | None:intergenic | 45.0% |
CATTCCCAAAAACCATGGGA+AGG | + | chr2_1:74050240-74050259 | Msa0224230:CDS | 45.0% | |
CACTATTCTTCCCAAAGGGA+AGG | + | chr2_1:74050353-74050372 | Msa0224230:three_prime_UTR | 45.0% | |
AGAAACCTTCCTGGCAATCC+AGG | + | chr2_1:74048036-74048055 | Msa0224230:intron | 50.0% | |
ATGAACCTGGATTGCCAGGA+AGG | - | chr2_1:74048044-74048063 | None:intergenic | 50.0% | |
GCGTAGCTTCTGCAAACTCA+CGG | + | chr2_1:74048357-74048376 | Msa0224230:intron | 50.0% | |
!! | TGGTGCACACAAGTTGGTTC+TGG | - | chr2_1:74048693-74048712 | None:intergenic | 50.0% |
CATGACCCATCAAGAGCCTT+GGG | + | chr2_1:74048711-74048730 | Msa0224230:CDS | 50.0% | |
ATGACCCATCAAGAGCCTTG+GGG | + | chr2_1:74048712-74048731 | Msa0224230:CDS | 50.0% | |
! | GAAAGCACGGTGAGAAGAAG+TGG | + | chr2_1:74048766-74048785 | Msa0224230:CDS | 50.0% |
ACTGTGGAACCCTCTTCTCA+AGG | + | chr2_1:74048877-74048896 | Msa0224230:CDS | 50.0% | |
CAGAGCCTTCTGTGATGCAT+TGG | + | chr2_1:74049456-74049475 | Msa0224230:CDS | 50.0% | |
CTCAGCCAATGCATCACAGA+AGG | - | chr2_1:74049464-74049483 | None:intergenic | 50.0% | |
!! | CTTCTGTGATGCATTGGCTG+AGG | + | chr2_1:74049462-74049481 | Msa0224230:CDS | 50.0% |
!! | GGTTGGTAGGATGGAAGTGT+AGG | - | chr2_1:74049736-74049755 | None:intergenic | 50.0% |
! | CAACATGGACTGAGATGAGC+TGG | - | chr2_1:74049827-74049846 | None:intergenic | 50.0% |
CAATAGACACGTGACCCTGT+TGG | - | chr2_1:74049861-74049880 | None:intergenic | 50.0% | |
!! | ACCAATGATGATGACGGTGC+CGG | + | chr2_1:74050090-74050109 | Msa0224230:CDS | 50.0% |
TTCCCATACCAGCAATGGTG+AGG | - | chr2_1:74050182-74050201 | None:intergenic | 50.0% | |
GCAACTTCCCATACCAGCAA+TGG | - | chr2_1:74050187-74050206 | None:intergenic | 50.0% | |
! | GCTTGATGATCGGAGTTGGA+AGG | - | chr2_1:74050216-74050235 | None:intergenic | 50.0% |
GGGTCATGGTGCACACAAGT+TGG | - | chr2_1:74048699-74048718 | None:intergenic | 55.0% | |
! | CCAAGGCTCTTGATGGGTCA+TGG | - | chr2_1:74048713-74048732 | None:intergenic | 55.0% |
CCATGACCCATCAAGAGCCT+TGG | + | chr2_1:74048710-74048729 | Msa0224230:CDS | 55.0% | |
TGACCCATCAAGAGCCTTGG+GGG | + | chr2_1:74048713-74048732 | Msa0224230:CDS | 55.0% | |
GATACCAGTTAGGTCCCCCA+AGG | - | chr2_1:74048730-74048749 | None:intergenic | 55.0% | |
!! | GCAGATGCTGGTTGGTAGGA+TGG | - | chr2_1:74049745-74049764 | None:intergenic | 55.0% |
! | AGCTGCAGATGCTGGTTGGT+AGG | - | chr2_1:74049749-74049768 | None:intergenic | 55.0% |
GTGAAGCTGCAGATGCTGGT+TGG | - | chr2_1:74049753-74049772 | None:intergenic | 55.0% | |
TGAGGTGAAGCTGCAGATGC+TGG | - | chr2_1:74049757-74049776 | None:intergenic | 55.0% | |
! | TTGGTGGGTCCCACTCAACA+TGG | - | chr2_1:74049842-74049861 | None:intergenic | 55.0% |
TTGAGTGGGACCCACCAACA+GGG | + | chr2_1:74049844-74049863 | Msa0224230:CDS | 55.0% | |
AGACACGTGACCCTGTTGGT+GGG | - | chr2_1:74049857-74049876 | None:intergenic | 55.0% | |
TAGACACGTGACCCTGTTGG+TGG | - | chr2_1:74049858-74049877 | None:intergenic | 55.0% | |
GGCACCGTCATCATCATTGG+TGG | - | chr2_1:74050091-74050110 | None:intergenic | 55.0% | |
ACCGGCACCGTCATCATCAT+TGG | - | chr2_1:74050094-74050113 | None:intergenic | 55.0% | |
TGCATTGTTTCCTCCGGCAC+CGG | - | chr2_1:74050112-74050131 | None:intergenic | 55.0% | |
CCGAATGGTCCCTTCCCTTT+GGG | - | chr2_1:74050366-74050385 | None:intergenic | 55.0% | |
CCCAAAGGGAAGGGACCATT+CGG | + | chr2_1:74050363-74050382 | Msa0224230:three_prime_UTR | 55.0% | |
TCCGAATGGTCCCTTCCCTT+TGG | - | chr2_1:74050367-74050386 | None:intergenic | 55.0% | |
GGTCCCCCAAGGCTCTTGAT+GGG | - | chr2_1:74048719-74048738 | None:intergenic | 60.0% | |
AGGTCCCCCAAGGCTCTTGA+TGG | - | chr2_1:74048720-74048739 | None:intergenic | 60.0% | |
AGAGCCTTGGGGGACCTAAC+TGG | + | chr2_1:74048723-74048742 | Msa0224230:CDS | 60.0% | |
GTTGAGTGGGACCCACCAAC+AGG | + | chr2_1:74049843-74049862 | Msa0224230:CDS | 60.0% | |
!! | GATGATGACGGTGCCGGTGC+CGG | + | chr2_1:74050096-74050115 | Msa0224230:CDS | 65.0% |
!! | GATGACGGTGCCGGTGCCGG+AGG | + | chr2_1:74050099-74050118 | Msa0224230:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 74047838 | 74050513 | 74047838 | ID=Msa0224230;Name=Msa0224230 |
chr2_1 | mRNA | 74047838 | 74050513 | 74047838 | ID=Msa0224230-mRNA-1;Parent=Msa0224230;Name=Msa0224230-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.5|0.66|1|1|1|3|244|437 |
chr2_1 | exon | 74047838 | 74047919 | 74047838 | ID=Msa0224230-mRNA-1:exon:21850;Parent=Msa0224230-mRNA-1 |
chr2_1 | exon | 74048502 | 74048898 | 74048502 | ID=Msa0224230-mRNA-1:exon:21851;Parent=Msa0224230-mRNA-1 |
chr2_1 | exon | 74049435 | 74050513 | 74049435 | ID=Msa0224230-mRNA-1:exon:21852;Parent=Msa0224230-mRNA-1 |
chr2_1 | CDS | 74047838 | 74047919 | 74047838 | ID=Msa0224230-mRNA-1:cds;Parent=Msa0224230-mRNA-1 |
chr2_1 | CDS | 74048502 | 74048898 | 74048502 | ID=Msa0224230-mRNA-1:cds;Parent=Msa0224230-mRNA-1 |
chr2_1 | CDS | 74049435 | 74050269 | 74049435 | ID=Msa0224230-mRNA-1:cds;Parent=Msa0224230-mRNA-1 |
chr2_1 | three_prime_UTR | 74050270 | 74050513 | 74050270 | ID=Msa0224230-mRNA-1:three_prime_utr;Parent=Msa0224230-mRNA-1 |
Gene Sequence |
Protein sequence |