Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265500 | XP_003597597.2 | 95.096 | 469 | 17 | 4 | 20 | 483 | 1 | 468 | 0.0 | 909 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265500 | sp|Q8H1F5|IDD7_ARATH | 49.895 | 477 | 169 | 15 | 16 | 470 | 17 | 445 | 2.67e-128 | 383 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265500 | G7IUH6 | 95.096 | 469 | 17 | 4 | 20 | 483 | 1 | 468 | 0.0 | 909 |
Gene ID | Type | Classification |
---|---|---|
Msa0265500 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0224230 | Msa0265500 | 0.868194 | 7.825539e-66 | -8.615850e-47 |
Msa0265500 | Msa0390810 | 0.853542 | 2.231089e-61 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265500 | MtrunA17_Chr2g0330171 | 95.096 | 469 | 17 | 4 | 20 | 483 | 1 | 468 | 0.0 | 909 |
Msa0265500 | MtrunA17_Chr8g0342421 | 58.444 | 527 | 132 | 19 | 1 | 465 | 1 | 502 | 6.68e-176 | 504 |
Msa0265500 | MtrunA17_Chr1g0151351 | 48.687 | 495 | 183 | 15 | 12 | 480 | 3 | 452 | 1.68e-132 | 391 |
Msa0265500 | MtrunA17_Chr7g0263941 | 63.356 | 292 | 87 | 5 | 64 | 346 | 34 | 314 | 8.89e-122 | 362 |
Msa0265500 | MtrunA17_Chr1g0191991 | 59.744 | 313 | 73 | 5 | 60 | 338 | 59 | 352 | 6.56e-120 | 361 |
Msa0265500 | MtrunA17_Chr8g0373541 | 74.641 | 209 | 38 | 1 | 19 | 227 | 3 | 196 | 1.13e-116 | 352 |
Msa0265500 | MtrunA17_Chr1g0181381 | 54.971 | 342 | 89 | 9 | 64 | 341 | 38 | 378 | 2.14e-113 | 343 |
Msa0265500 | MtrunA17_Chr1g0185121 | 51.436 | 383 | 141 | 11 | 20 | 376 | 6 | 369 | 3.98e-113 | 341 |
Msa0265500 | MtrunA17_Chr1g0162971 | 54.462 | 325 | 95 | 4 | 64 | 335 | 41 | 365 | 1.44e-112 | 339 |
Msa0265500 | MtrunA17_Chr4g0040571 | 87.805 | 164 | 20 | 0 | 64 | 227 | 39 | 202 | 8.57e-112 | 339 |
Msa0265500 | MtrunA17_Chr1g0199101 | 87.805 | 164 | 20 | 0 | 61 | 224 | 44 | 207 | 5.60e-110 | 336 |
Msa0265500 | MtrunA17_Chr1g0163001 | 77.083 | 192 | 41 | 1 | 38 | 226 | 14 | 205 | 1.19e-108 | 332 |
Msa0265500 | MtrunA17_Chr4g0029521 | 42.380 | 479 | 192 | 15 | 61 | 475 | 35 | 493 | 2.76e-108 | 330 |
Msa0265500 | MtrunA17_Chr1g0210821 | 87.500 | 160 | 20 | 0 | 67 | 226 | 47 | 206 | 3.31e-107 | 330 |
Msa0265500 | MtrunA17_Chr7g0268961 | 57.491 | 287 | 100 | 3 | 74 | 338 | 32 | 318 | 6.44e-107 | 327 |
Msa0265500 | MtrunA17_Chr2g0326381 | 81.928 | 166 | 29 | 1 | 63 | 227 | 31 | 196 | 5.39e-102 | 311 |
Msa0265500 | MtrunA17_Chr3g0141431 | 78.750 | 160 | 33 | 1 | 62 | 220 | 20 | 179 | 1.78e-96 | 297 |
Msa0265500 | MtrunA17_Chr2g0324991 | 89.313 | 131 | 14 | 0 | 75 | 205 | 3 | 133 | 1.74e-87 | 265 |
Msa0265500 | MtrunA17_Chr6g0479921 | 62.821 | 156 | 57 | 1 | 64 | 218 | 29 | 184 | 3.23e-72 | 236 |
Msa0265500 | MtrunA17_Chr8g0375521 | 62.821 | 156 | 56 | 2 | 64 | 217 | 27 | 182 | 3.19e-71 | 232 |
Msa0265500 | MtrunA17_Chr2g0320341 | 32.955 | 176 | 97 | 4 | 73 | 227 | 224 | 399 | 2.89e-23 | 101 |
Msa0265500 | MtrunA17_Chr1g0200421 | 35.099 | 151 | 86 | 3 | 78 | 216 | 236 | 386 | 3.96e-23 | 102 |
Msa0265500 | MtrunA17_Chr3g0123941 | 35.762 | 151 | 89 | 4 | 74 | 216 | 118 | 268 | 2.39e-22 | 97.8 |
Msa0265500 | MtrunA17_Chr5g0422571 | 36.709 | 158 | 86 | 7 | 76 | 221 | 96 | 251 | 1.28e-20 | 92.0 |
Msa0265500 | MtrunA17_Chr8g0382121 | 34.459 | 148 | 86 | 5 | 77 | 213 | 109 | 256 | 1.10e-19 | 89.7 |
Msa0265500 | MtrunA17_Chr7g0258011 | 32.716 | 162 | 89 | 6 | 80 | 223 | 176 | 335 | 1.49e-19 | 89.7 |
Msa0265500 | MtrunA17_Chr8g0352011 | 34.247 | 146 | 86 | 4 | 80 | 216 | 166 | 310 | 2.39e-19 | 89.4 |
Msa0265500 | MtrunA17_Chr1g0198651 | 35.172 | 145 | 79 | 6 | 85 | 216 | 107 | 249 | 2.06e-18 | 85.5 |
Msa0265500 | MtrunA17_Chr1g0173841 | 33.333 | 147 | 86 | 5 | 80 | 216 | 215 | 359 | 2.91e-18 | 86.7 |
Msa0265500 | MtrunA17_Chr4g0053341 | 32.911 | 158 | 95 | 5 | 68 | 216 | 63 | 218 | 8.41e-18 | 82.4 |
Msa0265500 | MtrunA17_Chr2g0328921 | 32.877 | 146 | 88 | 4 | 80 | 216 | 138 | 282 | 1.32e-17 | 83.6 |
Msa0265500 | MtrunA17_Chr4g0026521 | 33.333 | 147 | 86 | 5 | 80 | 216 | 118 | 262 | 1.74e-17 | 82.8 |
Msa0265500 | MtrunA17_Chr2g0321291 | 34.694 | 147 | 84 | 6 | 80 | 216 | 133 | 277 | 3.66e-17 | 82.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0265500 | AT1G55110.3 | 49.895 | 477 | 169 | 15 | 16 | 470 | 17 | 445 | 2.71e-129 | 383 |
Msa0265500 | AT1G55110.1 | 49.895 | 477 | 169 | 15 | 16 | 470 | 17 | 445 | 2.71e-129 | 383 |
Msa0265500 | AT1G55110.2 | 49.895 | 477 | 169 | 15 | 16 | 470 | 17 | 445 | 2.71e-129 | 383 |
Msa0265500 | AT3G13810.4 | 75.785 | 223 | 41 | 3 | 17 | 229 | 17 | 236 | 2.55e-117 | 354 |
Msa0265500 | AT3G13810.4 | 36.782 | 174 | 86 | 8 | 315 | 482 | 358 | 513 | 2.16e-17 | 85.1 |
Msa0265500 | AT3G13810.1 | 75.785 | 223 | 41 | 3 | 17 | 229 | 17 | 236 | 2.55e-117 | 354 |
Msa0265500 | AT3G13810.1 | 36.782 | 174 | 86 | 8 | 315 | 482 | 358 | 513 | 2.16e-17 | 85.1 |
Msa0265500 | AT3G13810.5 | 75.785 | 223 | 41 | 3 | 17 | 229 | 12 | 231 | 2.97e-117 | 354 |
Msa0265500 | AT3G13810.5 | 36.782 | 174 | 86 | 8 | 315 | 482 | 353 | 508 | 1.91e-17 | 85.5 |
Msa0265500 | AT3G13810.6 | 75.909 | 220 | 40 | 3 | 20 | 229 | 1 | 217 | 1.21e-115 | 349 |
Msa0265500 | AT3G13810.6 | 36.782 | 174 | 86 | 8 | 315 | 482 | 339 | 494 | 1.50e-17 | 85.5 |
Msa0265500 | AT3G50700.1 | 82.759 | 174 | 30 | 0 | 63 | 236 | 33 | 206 | 4.39e-112 | 339 |
Msa0265500 | AT5G66730.1 | 72.596 | 208 | 40 | 1 | 19 | 226 | 4 | 194 | 4.94e-112 | 340 |
Msa0265500 | AT1G03840.1 | 87.805 | 164 | 20 | 0 | 63 | 226 | 40 | 203 | 1.39e-111 | 339 |
Msa0265500 | AT5G44160.1 | 81.667 | 180 | 28 | 1 | 52 | 226 | 20 | 199 | 3.44e-109 | 332 |
Msa0265500 | AT1G14580.1 | 67.757 | 214 | 64 | 1 | 13 | 226 | 7 | 215 | 1.46e-108 | 330 |
Msa0265500 | AT1G14580.2 | 67.757 | 214 | 64 | 1 | 13 | 226 | 7 | 215 | 1.46e-108 | 330 |
Msa0265500 | AT1G14580.3 | 67.757 | 214 | 64 | 1 | 13 | 226 | 21 | 229 | 2.65e-108 | 330 |
Msa0265500 | AT4G02670.2 | 70.222 | 225 | 56 | 4 | 29 | 243 | 19 | 242 | 5.31e-108 | 327 |
Msa0265500 | AT4G02670.1 | 70.222 | 225 | 56 | 4 | 29 | 243 | 17 | 240 | 5.44e-108 | 327 |
Msa0265500 | AT2G02080.1 | 82.424 | 165 | 29 | 0 | 62 | 226 | 52 | 216 | 8.99e-108 | 330 |
Msa0265500 | AT2G02080.4 | 82.424 | 165 | 29 | 0 | 62 | 226 | 52 | 216 | 8.99e-108 | 330 |
Msa0265500 | AT2G02080.5 | 82.424 | 165 | 29 | 0 | 62 | 226 | 52 | 216 | 8.99e-108 | 330 |
Msa0265500 | AT2G02080.3 | 82.424 | 165 | 29 | 0 | 62 | 226 | 52 | 216 | 8.99e-108 | 330 |
Msa0265500 | AT1G03840.2 | 86.585 | 164 | 20 | 1 | 63 | 226 | 40 | 201 | 1.09e-107 | 329 |
Msa0265500 | AT3G45260.2 | 81.921 | 177 | 29 | 2 | 63 | 236 | 38 | 214 | 2.30e-107 | 327 |
Msa0265500 | AT3G45260.1 | 81.921 | 177 | 29 | 2 | 63 | 236 | 38 | 214 | 2.30e-107 | 327 |
Msa0265500 | AT3G13810.2 | 69.432 | 229 | 51 | 3 | 17 | 229 | 12 | 237 | 5.77e-106 | 325 |
Msa0265500 | AT3G13810.2 | 36.782 | 174 | 86 | 8 | 315 | 482 | 359 | 514 | 2.19e-17 | 85.1 |
Msa0265500 | AT5G60470.2 | 75.789 | 190 | 43 | 3 | 50 | 237 | 31 | 219 | 6.65e-106 | 323 |
Msa0265500 | AT5G60470.3 | 75.789 | 190 | 43 | 3 | 50 | 237 | 27 | 215 | 9.57e-106 | 323 |
Msa0265500 | AT2G02070.2 | 84.049 | 163 | 26 | 0 | 64 | 226 | 52 | 214 | 1.59e-104 | 324 |
Msa0265500 | AT2G02070.1 | 84.049 | 163 | 26 | 0 | 64 | 226 | 52 | 214 | 1.59e-104 | 324 |
Msa0265500 | AT3G13810.3 | 69.469 | 226 | 50 | 3 | 20 | 229 | 1 | 223 | 2.72e-104 | 320 |
Msa0265500 | AT3G13810.3 | 36.782 | 174 | 86 | 8 | 315 | 482 | 345 | 500 | 2.19e-17 | 85.1 |
Msa0265500 | AT5G03150.1 | 83.636 | 165 | 26 | 1 | 63 | 226 | 52 | 216 | 4.62e-103 | 317 |
Msa0265500 | AT5G44160.2 | 86.275 | 153 | 21 | 0 | 74 | 226 | 8 | 160 | 2.48e-100 | 308 |
Msa0265500 | AT5G60470.1 | 78.788 | 165 | 33 | 2 | 75 | 237 | 46 | 210 | 1.13e-96 | 299 |
Msa0265500 | AT2G02080.6 | 82.734 | 139 | 24 | 0 | 88 | 226 | 1 | 139 | 6.48e-91 | 284 |
Msa0265500 | AT2G02080.2 | 82.734 | 139 | 24 | 0 | 88 | 226 | 1 | 139 | 6.48e-91 | 284 |
Msa0265500 | AT1G68130.1 | 63.462 | 156 | 55 | 2 | 64 | 217 | 41 | 196 | 3.05e-72 | 235 |
Msa0265500 | AT2G01940.1 | 63.291 | 158 | 56 | 2 | 64 | 219 | 44 | 201 | 1.17e-71 | 234 |
Msa0265500 | AT1G25250.3 | 58.960 | 173 | 60 | 3 | 64 | 233 | 33 | 197 | 2.88e-71 | 231 |
Msa0265500 | AT2G01940.3 | 62.264 | 159 | 57 | 3 | 64 | 219 | 44 | 202 | 4.13e-68 | 225 |
Msa0265500 | AT1G25250.1 | 60.123 | 163 | 54 | 3 | 74 | 233 | 20 | 174 | 6.54e-68 | 222 |
Msa0265500 | AT1G68130.2 | 63.636 | 110 | 38 | 2 | 110 | 217 | 1 | 110 | 1.29e-45 | 162 |
Msa0265500 | AT2G01940.2 | 62.500 | 112 | 40 | 2 | 110 | 219 | 1 | 112 | 3.95e-45 | 162 |
Msa0265500 | AT1G25250.2 | 57.480 | 127 | 43 | 3 | 110 | 233 | 1 | 119 | 8.37e-45 | 159 |
Msa0265500 | AT1G34370.3 | 30.841 | 214 | 125 | 6 | 59 | 254 | 3 | 211 | 1.20e-23 | 101 |
Msa0265500 | AT1G34370.2 | 30.415 | 217 | 128 | 6 | 56 | 254 | 210 | 421 | 2.19e-23 | 103 |
Msa0265500 | AT1G34370.1 | 30.415 | 217 | 128 | 6 | 56 | 254 | 210 | 421 | 2.19e-23 | 103 |
Msa0265500 | AT5G22890.1 | 32.026 | 153 | 90 | 3 | 78 | 216 | 202 | 354 | 1.90e-21 | 96.3 |
Msa0265500 | AT1G13290.1 | 34.161 | 161 | 91 | 7 | 76 | 224 | 85 | 242 | 4.14e-19 | 88.2 |
Msa0265500 | AT3G20880.1 | 33.562 | 146 | 87 | 4 | 80 | 216 | 243 | 387 | 2.46e-18 | 87.4 |
Msa0265500 | AT1G51220.1 | 32.192 | 146 | 89 | 4 | 80 | 216 | 165 | 309 | 5.88e-18 | 85.5 |
Msa0265500 | AT3G57670.1 | 32.653 | 147 | 87 | 5 | 80 | 216 | 204 | 348 | 9.02e-18 | 85.5 |
Msa0265500 | AT1G08290.1 | 29.412 | 238 | 144 | 11 | 1 | 216 | 77 | 312 | 4.38e-17 | 82.8 |
Msa0265500 | AT1G34790.1 | 32.450 | 151 | 90 | 5 | 76 | 216 | 128 | 276 | 3.33e-16 | 79.7 |
Find 124 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTTCCACTATTGTTCTTT+TGG | 0.184669 | 2_2:+65828636 | Msa0265500:five_prime_UTR |
TTCTCTTCTTCTGGATTTCA+TGG | 0.185525 | 2_2:+65831240 | Msa0265500:CDS |
TTCTCTTGTGCCACAGGTTT+TGG | 0.189840 | 2_2:-65830112 | None:intergenic |
AACAACTCTTTCTCTTCTTC+TGG | 0.209031 | 2_2:+65831231 | Msa0265500:CDS |
AGTTTCAACTTTGAACAATT+TGG | 0.250101 | 2_2:+65828713 | Msa0265500:five_prime_UTR |
GAACATGTTATAACAGTCTT+AGG | 0.263007 | 2_2:+65829054 | Msa0265500:five_prime_UTR |
TTTCATTTCTCATACATATC+TGG | 0.266054 | 2_2:+65831675 | Msa0265500:three_prime_UTR |
GGTATTTGTACTTCTTGTTC+TGG | 0.297642 | 2_2:-65830883 | None:intergenic |
GAAGCTAGTGCTAATTCTTC+TGG | 0.298581 | 2_2:+65829192 | Msa0265500:CDS |
GGAAGTGTAGGACCATTTCT+AGG | 0.313383 | 2_2:-65830991 | None:intergenic |
AGCCTTGGATATCTTGAGTT+TGG | 0.314047 | 2_2:-65830819 | None:intergenic |
TTTGTTGCCATCAGTGTCTT+TGG | 0.324056 | 2_2:-65829799 | None:intergenic |
CCGAATGGTCCCTTCCCTTT+GGG | 0.324607 | 2_2:-65831636 | None:intergenic |
TCCGAATGGTCCCTTCCCTT+TGG | 0.334819 | 2_2:-65831637 | None:intergenic |
GCACTTACAAGAGATTTCTT+AGG | 0.351186 | 2_2:+65831399 | Msa0265500:CDS |
AGAAAGAGTTGTTTATCATT+TGG | 0.355557 | 2_2:-65831221 | None:intergenic |
CACACACCTTAGAAATATTA+TGG | 0.365880 | 2_2:-65831720 | None:intergenic |
CCATGGGAAGGTAATTAGTT+TGG | 0.371243 | 2_2:+65831522 | Msa0265500:exon |
GCATGACCATAATATTTCTA+AGG | 0.371909 | 2_2:+65831714 | Msa0265500:three_prime_UTR |
ACCTCTCCTCAAACTATTCA+AGG | 0.372455 | 2_2:+65830932 | Msa0265500:CDS |
GTAGGACCATTTCTAGGGTT+AGG | 0.377918 | 2_2:-65830985 | None:intergenic |
ACAGTATTTCACATACAAAA+AGG | 0.384761 | 2_2:-65831603 | None:intergenic |
ATCCAACCTTGAATAGTTTG+AGG | 0.405976 | 2_2:-65830938 | None:intergenic |
ATCAAAGTTTCAAAATGTTA+AGG | 0.407806 | 2_2:+65830860 | Msa0265500:CDS |
TTGTGTAGGTTGTGGAATTA+CGG | 0.407829 | 2_2:-65830767 | None:intergenic |
AGTGATATCCTCACCATTGC+TGG | 0.409995 | 2_2:+65831441 | Msa0265500:CDS |
TCTAATTTGACTTCTGCATC+TGG | 0.412009 | 2_2:+65829168 | Msa0265500:CDS |
TAGGACCATTTCTAGGGTTA+GGG | 0.414611 | 2_2:-65830984 | None:intergenic |
TGGTGCACACAAGTTGGTTC+TGG | 0.417382 | 2_2:-65829958 | None:intergenic |
TATCCTCACCATTGCTGGTA+TGG | 0.421802 | 2_2:+65831446 | Msa0265500:CDS |
CATGACCCATCAAGAGCCTT+GGG | 0.426349 | 2_2:+65829979 | Msa0265500:CDS |
GTTGAGTGGGACCCACCAAC+AGG | 0.427753 | 2_2:+65831113 | Msa0265500:CDS |
GTTCTTTGCTTCAACTTCCA+TGG | 0.431659 | 2_2:-65829901 | None:intergenic |
TCTGTATTCTCTTGTGCCAC+AGG | 0.435175 | 2_2:-65830118 | None:intergenic |
TTCATTCTCTCACTACTCAA+TGG | 0.438673 | 2_2:+65828908 | Msa0265500:five_prime_UTR |
AAGAAAAGAAGAAACCTTCC+TGG | 0.442018 | 2_2:+65829297 | Msa0265500:CDS |
ATTTGAGTTTATCATGTTGT+TGG | 0.445102 | 2_2:-65831163 | None:intergenic |
GTTTGAGGAGAGGTCAATGT+TGG | 0.446017 | 2_2:-65830923 | None:intergenic |
CTTTCTTCAATGTCAAGCCT+TGG | 0.446505 | 2_2:-65830834 | None:intergenic |
AAGCTATAACTTCAGCTTGT+GGG | 0.447498 | 2_2:-65829771 | None:intergenic |
GAAAACCCTAACCCTAGAAA+TGG | 0.454115 | 2_2:+65830979 | Msa0265500:CDS |
AGTGCTTCTTGATACCAGTT+AGG | 0.454887 | 2_2:-65830005 | None:intergenic |
GAAAATGAACCTGGATTGCC+AGG | 0.461039 | 2_2:-65829315 | None:intergenic |
CCCAAAGGGAAGGGACCATT+CGG | 0.463032 | 2_2:+65831636 | Msa0265500:three_prime_UTR |
CAGAGCCTTCTGTGATGCAT+TGG | 0.469401 | 2_2:+65830726 | Msa0265500:CDS |
TGCATTGTTTCCTCCGGCAC+CGG | 0.471541 | 2_2:-65831379 | None:intergenic |
AGAAACCTTCCTGGCAATCC+AGG | 0.472577 | 2_2:+65829306 | Msa0265500:CDS |
CCAAGGCTCTTGATGGGTCA+TGG | 0.475409 | 2_2:-65829978 | None:intergenic |
TGTAAGTGCATTGTTTCCTC+CGG | 0.475628 | 2_2:-65831385 | None:intergenic |
CCATGACCCATCAAGAGCCT+TGG | 0.490603 | 2_2:+65829978 | Msa0265500:CDS |
ACCGGCACCGTCATCATCAT+TGG | 0.490777 | 2_2:-65831361 | None:intergenic |
AACAACATGATAAACTCAAA+TGG | 0.493838 | 2_2:+65831165 | Msa0265500:CDS |
AATCTTCAACTTCATAAAAG+AGG | 0.500458 | 2_2:+65829868 | Msa0265500:CDS |
ATCCTCACCATTGCTGGTAT+GGG | 0.502220 | 2_2:+65831447 | Msa0265500:CDS |
GCTTGATGATCGGAGTTGGA+AGG | 0.505394 | 2_2:-65831483 | None:intergenic |
GATGATGACGGTGCCGGTGC+CGG | 0.516820 | 2_2:+65831366 | Msa0265500:CDS |
GTTACAGAAAGCAGCTCAGA+TGG | 0.517581 | 2_2:+65831065 | Msa0265500:CDS |
CTTGATGATCGGAGTTGGAA+GGG | 0.517775 | 2_2:-65831482 | None:intergenic |
GACTGTTATAACATGTTCCA+TGG | 0.518996 | 2_2:-65829049 | None:intergenic |
ATGAACCTGGATTGCCAGGA+AGG | 0.520133 | 2_2:-65829311 | None:intergenic |
ATAGTTATACCTTGAGAAGA+GGG | 0.521705 | 2_2:-65830154 | None:intergenic |
TATGTCCAAAAGAACAATAG+TGG | 0.522393 | 2_2:-65828641 | None:intergenic |
ATATGTGAGATCTGTAACAA+AGG | 0.526520 | 2_2:+65829829 | Msa0265500:CDS |
AAGAAGTACAAATACCCTCT+TGG | 0.528888 | 2_2:+65830890 | Msa0265500:CDS |
CTGTCACTATTCTTCCCAAA+GGG | 0.529091 | 2_2:+65831622 | Msa0265500:three_prime_UTR |
AAGAAGAAACATTAGATCCA+TGG | 0.529300 | 2_2:+65829032 | Msa0265500:five_prime_UTR |
ACAACAATCATTAGTTGTTG+AGG | 0.530940 | 2_2:+65829137 | Msa0265500:CDS |
AGTATGCAGTTCAATCAGAC+TGG | 0.532991 | 2_2:+65830079 | Msa0265500:CDS |
TTTGGAGATTGTTCATGTTG+TGG | 0.533091 | 2_2:-65830801 | None:intergenic |
AAAGAACAAGCAATGAGATA+AGG | 0.533182 | 2_2:+65829917 | Msa0265500:CDS |
CTCCTCAAACTATTCAAGGT+TGG | 0.534048 | 2_2:+65830936 | Msa0265500:CDS |
TGAGGTGAAGCTGCAGATGC+TGG | 0.537360 | 2_2:-65831024 | None:intergenic |
GTTGAAACTCAGAGAGAGAG+AGG | 0.540979 | 2_2:-65828699 | None:intergenic |
TGAGTTTATCATGTTGTTGG+TGG | 0.541113 | 2_2:-65831160 | None:intergenic |
GCAGATGCTGGTTGGTAGGA+TGG | 0.542786 | 2_2:-65831012 | None:intergenic |
TTGGTGGGTCCCACTCAACA+TGG | 0.546559 | 2_2:-65831109 | None:intergenic |
CCAAACTAATTACCTTCCCA+TGG | 0.548476 | 2_2:-65831522 | None:intergenic |
GTTTGCTTGATGATCGGAGT+TGG | 0.548511 | 2_2:-65831487 | None:intergenic |
CAACATGGACTGAGATGAGC+TGG | 0.548999 | 2_2:-65831094 | None:intergenic |
CACTATTCTTCCCAAAGGGA+AGG | 0.550681 | 2_2:+65831626 | Msa0265500:three_prime_UTR |
TATCATTTGGTCTTCACATG+AGG | 0.559455 | 2_2:-65831208 | None:intergenic |
GGAATGGTTTGCTTGATGAT+CGG | 0.561157 | 2_2:-65831493 | None:intergenic |
TATAGTTATACCTTGAGAAG+AGG | 0.562344 | 2_2:-65830155 | None:intergenic |
GAACATAATATCAATCATGA+TGG | 0.565329 | 2_2:+65831312 | Msa0265500:CDS |
GAAAGCACGGTGAGAAGAAG+TGG | 0.566601 | 2_2:+65830034 | Msa0265500:CDS |
GAAGTGTAGGACCATTTCTA+GGG | 0.573649 | 2_2:-65830990 | None:intergenic |
ACCTTGAATAGTTTGAGGAG+AGG | 0.575888 | 2_2:-65830933 | None:intergenic |
TCATCTCAGTCCATGTTGAG+TGG | 0.578988 | 2_2:+65831099 | Msa0265500:CDS |
ACTGTCACTATTCTTCCCAA+AGG | 0.580873 | 2_2:+65831621 | Msa0265500:three_prime_UTR |
CTCAGCCAATGCATCACAGA+AGG | 0.582209 | 2_2:-65830731 | None:intergenic |
TAGACACGTGACCCTGTTGG+TGG | 0.583962 | 2_2:-65831125 | None:intergenic |
CTTCTGTGATGCATTGGCTG+AGG | 0.585782 | 2_2:+65830732 | Msa0265500:CDS |
GGCACCGTCATCATCATTGG+TGG | 0.585980 | 2_2:-65831358 | None:intergenic |
AAAGAGGACACAATTTGCCA+TGG | 0.587343 | 2_2:+65829884 | Msa0265500:CDS |
CATCTCAGTCCATGTTGAGT+GGG | 0.587878 | 2_2:+65831100 | Msa0265500:CDS |
CTCCAAACTCAAGATATCCA+AGG | 0.596098 | 2_2:+65830817 | Msa0265500:CDS |
GCAACTTCCCATACCAGCAA+TGG | 0.602937 | 2_2:-65831454 | None:intergenic |
AAAGCTATAACTTCAGCTTG+TGG | 0.603171 | 2_2:-65829772 | None:intergenic |
AAGCACTTCTGCAGAAAGCA+CGG | 0.603251 | 2_2:+65830021 | Msa0265500:CDS |
TTGAAACTCAGAGAGAGAGA+GGG | 0.610703 | 2_2:-65828698 | None:intergenic |
TTGGATTGACATAGCCAAGA+GGG | 0.612593 | 2_2:-65830904 | None:intergenic |
GATGACGGTGCCGGTGCCGG+AGG | 0.615538 | 2_2:+65831369 | Msa0265500:CDS |
ACTATTCTTCCCAAAGGGAA+GGG | 0.619107 | 2_2:+65831627 | Msa0265500:three_prime_UTR |
TTCCCATACCAGCAATGGTG+AGG | 0.621943 | 2_2:-65831449 | None:intergenic |
CAATAGACACGTGACCCTGT+TGG | 0.624582 | 2_2:-65831128 | None:intergenic |
ACCAATGATGATGACGGTGC+CGG | 0.625084 | 2_2:+65831360 | Msa0265500:CDS |
ACTGTGGAACCCTCTTCTCA+AGG | 0.626939 | 2_2:+65830145 | Msa0265500:CDS |
AGCTGCAGATGCTGGTTGGT+AGG | 0.631564 | 2_2:-65831016 | None:intergenic |
TCAACCACCAATGATGATGA+CGG | 0.633146 | 2_2:+65831354 | Msa0265500:CDS |
GGTTGGTAGGATGGAAGTGT+AGG | 0.641310 | 2_2:-65831003 | None:intergenic |
TTACAGAAAGCAGCTCAGAT+GGG | 0.645481 | 2_2:+65831066 | Msa0265500:CDS |
GTGAAGCTGCAGATGCTGGT+TGG | 0.647374 | 2_2:-65831020 | None:intergenic |
AGACACGTGACCCTGTTGGT+GGG | 0.651658 | 2_2:-65831124 | None:intergenic |
TGACCCATCAAGAGCCTTGG+GGG | 0.652313 | 2_2:+65829981 | Msa0265500:CDS |
TTTGTCACCAAAGACACTGA+TGG | 0.656547 | 2_2:+65829792 | Msa0265500:CDS |
AGGATATCACTATCAGAGAG+TGG | 0.656639 | 2_2:-65831429 | None:intergenic |
AACAATAGTGGAAACCAGAG+AGG | 0.669561 | 2_2:-65828629 | None:intergenic |
GGGTCATGGTGCACACAAGT+TGG | 0.674016 | 2_2:-65829964 | None:intergenic |
TTGAGTGGGACCCACCAACA+GGG | 0.675919 | 2_2:+65831114 | Msa0265500:CDS |
AAAGCTCACTCCAAAACCTG+TGG | 0.698299 | 2_2:+65830102 | Msa0265500:CDS |
AGAGAATACAGATGTGACTG+TGG | 0.700052 | 2_2:+65830129 | Msa0265500:CDS |
ATGACCCATCAAGAGCCTTG+GGG | 0.705499 | 2_2:+65829980 | Msa0265500:CDS |
GTTGGATTGACATAGCCAAG+AGG | 0.725600 | 2_2:-65830905 | None:intergenic |
AATGCTGTAGCTGACATGTG+AGG | 0.760209 | 2_2:-65831042 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTATTAATAACTTAGTTT+AGG | - | chr2_2:65830207-65830226 | None:intergenic | 10.0% |
!!! | TTAAATATTATATGATTTTC+AGG | + | chr2_2:65830683-65830702 | Msa0265500:intron | 10.0% |
!! | ATCTTAATTGTTATAAATTG+TGG | + | chr2_2:65829363-65829382 | Msa0265500:intron | 15.0% |
!!! | CATATTTTGTTTATCTAAAT+TGG | + | chr2_2:65829700-65829719 | Msa0265500:intron | 15.0% |
!! | AGACAACAAAAAAAAAAAAA+AGG | - | chr2_2:65831560-65831579 | None:intergenic | 15.0% |
!!! | TTTTTTTTTAATCTCAGTGA+TGG | - | chr2_2:65828775-65828794 | None:intergenic | 20.0% |
!! | AAACAAAAAAGGAAAAAAAG+TGG | - | chr2_2:65828952-65828971 | None:intergenic | 20.0% |
!! | TAAGAAAAAAACATGATCAA+AGG | + | chr2_2:65829096-65829115 | Msa0265500:exon | 20.0% |
!! | ATTAAGATGAAAACAAAAGA+TGG | - | chr2_2:65829351-65829370 | None:intergenic | 20.0% |
!! | GAAAAATATGAAGAAAAACA+TGG | + | chr2_2:65829429-65829448 | Msa0265500:intron | 20.0% |
!! | TATACTATTATCAACTTGAA+GGG | - | chr2_2:65830249-65830268 | None:intergenic | 20.0% |
!!! | CAAACATTTTTTAAAGAAAG+TGG | + | chr2_2:65830317-65830336 | Msa0265500:intron | 20.0% |
!!! | GAAAGTGGAAATTTTTAAAA+TGG | + | chr2_2:65830332-65830351 | Msa0265500:intron | 20.0% |
!!! | TTTTTAATGTACTATCTCTT+TGG | + | chr2_2:65830369-65830388 | Msa0265500:intron | 20.0% |
!!! | AATATTATATGATTTTCAGG+AGG | + | chr2_2:65830686-65830705 | Msa0265500:intron | 20.0% |
!!! | ATATTATATGATTTTCAGGA+GGG | + | chr2_2:65830687-65830706 | Msa0265500:intron | 20.0% |
!! | ATCAAAGTTTCAAAATGTTA+AGG | + | chr2_2:65830860-65830879 | Msa0265500:CDS | 20.0% |
! | GAGATGAGAAAAATGAATAT+TGG | - | chr2_2:65828677-65828696 | None:intergenic | 25.0% |
! | AGTTTCAACTTTGAACAATT+TGG | + | chr2_2:65828713-65828732 | Msa0265500:five_prime_UTR | 25.0% |
! | AGTCTAACACAAAACAAAAA+AGG | - | chr2_2:65828963-65828982 | None:intergenic | 25.0% |
!! | CATATTTTTCCACAATATCA+TGG | - | chr2_2:65829419-65829438 | None:intergenic | 25.0% |
! | TTAATTAAATGTCATTGCAG+TGG | - | chr2_2:65829484-65829503 | None:intergenic | 25.0% |
! | GCAATGACATTTAATTAAAC+CGG | + | chr2_2:65829486-65829505 | Msa0265500:intron | 25.0% |
! | TTTAACATGTTATGCTTGTT+TGG | + | chr2_2:65829550-65829569 | Msa0265500:intron | 25.0% |
! | AATCTTCAACTTCATAAAAG+AGG | + | chr2_2:65829868-65829887 | Msa0265500:CDS | 25.0% |
! | GTATACTATTATCAACTTGA+AGG | - | chr2_2:65830250-65830269 | None:intergenic | 25.0% |
! | AAAAATACAAAAGTGAAGTG+AGG | - | chr2_2:65830653-65830672 | None:intergenic | 25.0% |
!! | ATTTGAGTTTATCATGTTGT+TGG | - | chr2_2:65831166-65831185 | None:intergenic | 25.0% |
! | AACAACATGATAAACTCAAA+TGG | + | chr2_2:65831165-65831184 | Msa0265500:CDS | 25.0% |
! | AGAAAGAGTTGTTTATCATT+TGG | - | chr2_2:65831224-65831243 | None:intergenic | 25.0% |
! | GAACATAATATCAATCATGA+TGG | + | chr2_2:65831312-65831331 | Msa0265500:CDS | 25.0% |
! | ACAGTATTTCACATACAAAA+AGG | - | chr2_2:65831606-65831625 | None:intergenic | 25.0% |
! | GAAAAATATTTGATTCCGAA+TGG | - | chr2_2:65831654-65831673 | None:intergenic | 25.0% |
! | TTTCATTTCTCATACATATC+TGG | + | chr2_2:65831675-65831694 | Msa0265500:three_prime_UTR | 25.0% |
TATGTCCAAAAGAACAATAG+TGG | - | chr2_2:65828644-65828663 | None:intergenic | 30.0% | |
!!! | TTACAAGTCTTGCTTTTTCT+GGG | - | chr2_2:65828997-65829016 | None:intergenic | 30.0% |
!!! | ATTACAAGTCTTGCTTTTTC+TGG | - | chr2_2:65828998-65829017 | None:intergenic | 30.0% |
AAGAAGAAACATTAGATCCA+TGG | + | chr2_2:65829032-65829051 | Msa0265500:five_prime_UTR | 30.0% | |
GAACATGTTATAACAGTCTT+AGG | + | chr2_2:65829054-65829073 | Msa0265500:five_prime_UTR | 30.0% | |
ACAACAATCATTAGTTGTTG+AGG | + | chr2_2:65829137-65829156 | Msa0265500:CDS | 30.0% | |
ATAAATTGTGGTTATAGTCG+CGG | + | chr2_2:65829375-65829394 | Msa0265500:intron | 30.0% | |
ATATGTGAGATCTGTAACAA+AGG | + | chr2_2:65829829-65829848 | Msa0265500:CDS | 30.0% | |
AAAGAACAAGCAATGAGATA+AGG | + | chr2_2:65829917-65829936 | Msa0265500:CDS | 30.0% | |
ATAGTTATACCTTGAGAAGA+GGG | - | chr2_2:65830157-65830176 | None:intergenic | 30.0% | |
TATAGTTATACCTTGAGAAG+AGG | - | chr2_2:65830158-65830177 | None:intergenic | 30.0% | |
ACTTGAAGGGATAAAATATG+TGG | - | chr2_2:65830236-65830255 | None:intergenic | 30.0% | |
TGTACTATCTCTTTGGTTAT+CGG | + | chr2_2:65830376-65830395 | Msa0265500:intron | 30.0% | |
CAACAAAATCATACTAACAC+CGG | + | chr2_2:65830496-65830515 | Msa0265500:intron | 30.0% | |
! | TGGGATAAATGTGAATTTTC+CGG | - | chr2_2:65830518-65830537 | None:intergenic | 30.0% |
GAATATTTCTTGGCTGTTAT+AGG | + | chr2_2:65830613-65830632 | Msa0265500:intron | 30.0% | |
! | ATTTCATGGAACTTCTTTTG+AGG | + | chr2_2:65831254-65831273 | Msa0265500:CDS | 30.0% |
! | GCATGACCATAATATTTCTA+AGG | + | chr2_2:65831714-65831733 | Msa0265500:three_prime_UTR | 30.0% |
CACACACCTTAGAAATATTA+TGG | - | chr2_2:65831723-65831742 | None:intergenic | 30.0% | |
! | GGTTTCCACTATTGTTCTTT+TGG | + | chr2_2:65828636-65828655 | Msa0265500:five_prime_UTR | 35.0% |
TTCATTCTCTCACTACTCAA+TGG | + | chr2_2:65828908-65828927 | Msa0265500:five_prime_UTR | 35.0% | |
GACTGTTATAACATGTTCCA+TGG | - | chr2_2:65829052-65829071 | None:intergenic | 35.0% | |
! | TCTAATTTGACTTCTGCATC+TGG | + | chr2_2:65829168-65829187 | Msa0265500:CDS | 35.0% |
! | AGGTTTCTTCTTTTCTTAGC+TGG | - | chr2_2:65829294-65829313 | None:intergenic | 35.0% |
AAGAAAAGAAGAAACCTTCC+TGG | + | chr2_2:65829297-65829316 | Msa0265500:CDS | 35.0% | |
AGCACTTAAGAAAATGAACC+TGG | - | chr2_2:65829327-65829346 | None:intergenic | 35.0% | |
! | GAAGAAAAACATGGTTGATG+CGG | + | chr2_2:65829438-65829457 | Msa0265500:intron | 35.0% |
! | GTTATGCTTGTTTGGAATCA+TGG | + | chr2_2:65829558-65829577 | Msa0265500:intron | 35.0% |
AAGCTATAACTTCAGCTTGT+GGG | - | chr2_2:65829774-65829793 | None:intergenic | 35.0% | |
AAAGCTATAACTTCAGCTTG+TGG | - | chr2_2:65829775-65829794 | None:intergenic | 35.0% | |
ATAGTGCATGCTTAGATTGA+TGG | + | chr2_2:65830402-65830421 | Msa0265500:intron | 35.0% | |
ACTTAGTACTCTCAAGTCTA+AGG | + | chr2_2:65830544-65830563 | Msa0265500:intron | 35.0% | |
TGTGAAACAGAAAATGAGAG+AGG | + | chr2_2:65830588-65830607 | Msa0265500:intron | 35.0% | |
GTGAAACAGAAAATGAGAGA+GGG | + | chr2_2:65830589-65830608 | Msa0265500:intron | 35.0% | |
TTGTGTAGGTTGTGGAATTA+CGG | - | chr2_2:65830770-65830789 | None:intergenic | 35.0% | |
!! | GAATTTTGTTGTGTAGGTTG+TGG | - | chr2_2:65830778-65830797 | None:intergenic | 35.0% |
!! | TGGTGAGAATTTTGTTGTGT+AGG | - | chr2_2:65830784-65830803 | None:intergenic | 35.0% |
TTTGGAGATTGTTCATGTTG+TGG | - | chr2_2:65830804-65830823 | None:intergenic | 35.0% | |
GGTATTTGTACTTCTTGTTC+TGG | - | chr2_2:65830886-65830905 | None:intergenic | 35.0% | |
! | AAGAAGTACAAATACCCTCT+TGG | + | chr2_2:65830890-65830909 | Msa0265500:CDS | 35.0% |
ATCCAACCTTGAATAGTTTG+AGG | - | chr2_2:65830941-65830960 | None:intergenic | 35.0% | |
! | TAGGGTTAGGGTTTTCATAA+AGG | - | chr2_2:65830975-65830994 | None:intergenic | 35.0% |
TGAGTTTATCATGTTGTTGG+TGG | - | chr2_2:65831163-65831182 | None:intergenic | 35.0% | |
! | TATCATTTGGTCTTCACATG+AGG | - | chr2_2:65831211-65831230 | None:intergenic | 35.0% |
AACAACTCTTTCTCTTCTTC+TGG | + | chr2_2:65831231-65831250 | Msa0265500:CDS | 35.0% | |
TTCTCTTCTTCTGGATTTCA+TGG | + | chr2_2:65831240-65831259 | Msa0265500:CDS | 35.0% | |
!! | TCTTTTGAGGATACTTTTGC+TGG | + | chr2_2:65831267-65831286 | Msa0265500:CDS | 35.0% |
GCACTTACAAGAGATTTCTT+AGG | + | chr2_2:65831399-65831418 | Msa0265500:CDS | 35.0% | |
AAACCATTCCCAAAAACCAT+GGG | + | chr2_2:65831506-65831525 | Msa0265500:CDS | 35.0% | |
! | ATTACCTTCCCATGGTTTTT+GGG | - | chr2_2:65831517-65831536 | None:intergenic | 35.0% |
! | AATTACCTTCCCATGGTTTT+TGG | - | chr2_2:65831518-65831537 | None:intergenic | 35.0% |
! | AACAATAGTGGAAACCAGAG+AGG | - | chr2_2:65828632-65828651 | None:intergenic | 40.0% |
TTGAAACTCAGAGAGAGAGA+GGG | - | chr2_2:65828701-65828720 | None:intergenic | 40.0% | |
GAAGCTAGTGCTAATTCTTC+TGG | + | chr2_2:65829192-65829211 | Msa0265500:CDS | 40.0% | |
CGCTATGAACCATGATATTG+TGG | + | chr2_2:65829407-65829426 | Msa0265500:intron | 40.0% | |
TGGCATCACAACTACAATTG+CGG | - | chr2_2:65829464-65829483 | None:intergenic | 40.0% | |
CTCGAGCTTCAACAAAATCA+CGG | - | chr2_2:65829604-65829623 | None:intergenic | 40.0% | |
AATATGAATGCGCGCATGTT+TGG | - | chr2_2:65829686-65829705 | None:intergenic | 40.0% | |
TTTGTCACCAAAGACACTGA+TGG | + | chr2_2:65829792-65829811 | Msa0265500:CDS | 40.0% | |
TTTGTTGCCATCAGTGTCTT+TGG | - | chr2_2:65829802-65829821 | None:intergenic | 40.0% | |
AAAGAGGACACAATTTGCCA+TGG | + | chr2_2:65829884-65829903 | Msa0265500:CDS | 40.0% | |
GTTCTTTGCTTCAACTTCCA+TGG | - | chr2_2:65829904-65829923 | None:intergenic | 40.0% | |
AGTGCTTCTTGATACCAGTT+AGG | - | chr2_2:65830008-65830027 | None:intergenic | 40.0% | |
AGTATGCAGTTCAATCAGAC+TGG | + | chr2_2:65830079-65830098 | Msa0265500:CDS | 40.0% | |
AGAGAATACAGATGTGACTG+TGG | + | chr2_2:65830129-65830148 | Msa0265500:CDS | 40.0% | |
!! | GAGAGTACTAAGTGCATGTT+GGG | - | chr2_2:65830537-65830556 | None:intergenic | 40.0% |
!! | TGAGAGTACTAAGTGCATGT+TGG | - | chr2_2:65830538-65830557 | None:intergenic | 40.0% |
GAGAGAGGGTGAATATTTCT+TGG | + | chr2_2:65830603-65830622 | Msa0265500:intron | 40.0% | |
CTCCAAACTCAAGATATCCA+AGG | + | chr2_2:65830817-65830836 | Msa0265500:CDS | 40.0% | |
AGCCTTGGATATCTTGAGTT+TGG | - | chr2_2:65830822-65830841 | None:intergenic | 40.0% | |
CTTTCTTCAATGTCAAGCCT+TGG | - | chr2_2:65830837-65830856 | None:intergenic | 40.0% | |
TTGGATTGACATAGCCAAGA+GGG | - | chr2_2:65830907-65830926 | None:intergenic | 40.0% | |
ACCTCTCCTCAAACTATTCA+AGG | + | chr2_2:65830932-65830951 | Msa0265500:CDS | 40.0% | |
ACCTTGAATAGTTTGAGGAG+AGG | - | chr2_2:65830936-65830955 | None:intergenic | 40.0% | |
CTCCTCAAACTATTCAAGGT+TGG | + | chr2_2:65830936-65830955 | Msa0265500:CDS | 40.0% | |
GAAAACCCTAACCCTAGAAA+TGG | + | chr2_2:65830979-65830998 | Msa0265500:CDS | 40.0% | |
!! | TAGGACCATTTCTAGGGTTA+GGG | - | chr2_2:65830987-65831006 | None:intergenic | 40.0% |
GAAGTGTAGGACCATTTCTA+GGG | - | chr2_2:65830993-65831012 | None:intergenic | 40.0% | |
TTACAGAAAGCAGCTCAGAT+GGG | + | chr2_2:65831066-65831085 | Msa0265500:CDS | 40.0% | |
! | TCAACCACCAATGATGATGA+CGG | + | chr2_2:65831354-65831373 | Msa0265500:CDS | 40.0% |
TGTAAGTGCATTGTTTCCTC+CGG | - | chr2_2:65831388-65831407 | None:intergenic | 40.0% | |
AGGATATCACTATCAGAGAG+TGG | - | chr2_2:65831432-65831451 | None:intergenic | 40.0% | |
!! | GGAATGGTTTGCTTGATGAT+CGG | - | chr2_2:65831496-65831515 | None:intergenic | 40.0% |
CAAACCATTCCCAAAAACCA+TGG | + | chr2_2:65831505-65831524 | Msa0265500:CDS | 40.0% | |
CCAAACTAATTACCTTCCCA+TGG | - | chr2_2:65831525-65831544 | None:intergenic | 40.0% | |
CCATGGGAAGGTAATTAGTT+TGG | + | chr2_2:65831522-65831541 | Msa0265500:exon | 40.0% | |
ACTGTCACTATTCTTCCCAA+AGG | + | chr2_2:65831621-65831640 | Msa0265500:three_prime_UTR | 40.0% | |
CTGTCACTATTCTTCCCAAA+GGG | + | chr2_2:65831622-65831641 | Msa0265500:three_prime_UTR | 40.0% | |
ACTATTCTTCCCAAAGGGAA+GGG | + | chr2_2:65831627-65831646 | Msa0265500:three_prime_UTR | 40.0% | |
GTTGAAACTCAGAGAGAGAG+AGG | - | chr2_2:65828702-65828721 | None:intergenic | 45.0% | |
GAAAATGAACCTGGATTGCC+AGG | - | chr2_2:65829318-65829337 | None:intergenic | 45.0% | |
CGTTTGCAGCAGCAATATAC+CGG | - | chr2_2:65829508-65829527 | None:intergenic | 45.0% | |
GAGCTTCAACAAAATCACGG+TGG | - | chr2_2:65829601-65829620 | None:intergenic | 45.0% | |
AAGCACTTCTGCAGAAAGCA+CGG | + | chr2_2:65830021-65830040 | Msa0265500:CDS | 45.0% | |
AAAGCTCACTCCAAAACCTG+TGG | + | chr2_2:65830102-65830121 | Msa0265500:CDS | 45.0% | |
! | TTCTCTTGTGCCACAGGTTT+TGG | - | chr2_2:65830115-65830134 | None:intergenic | 45.0% |
TCTGTATTCTCTTGTGCCAC+AGG | - | chr2_2:65830121-65830140 | None:intergenic | 45.0% | |
GTTGGATTGACATAGCCAAG+AGG | - | chr2_2:65830908-65830927 | None:intergenic | 45.0% | |
GTTTGAGGAGAGGTCAATGT+TGG | - | chr2_2:65830926-65830945 | None:intergenic | 45.0% | |
!! | GTAGGACCATTTCTAGGGTT+AGG | - | chr2_2:65830988-65831007 | None:intergenic | 45.0% |
! | GGAAGTGTAGGACCATTTCT+AGG | - | chr2_2:65830994-65831013 | None:intergenic | 45.0% |
AATGCTGTAGCTGACATGTG+AGG | - | chr2_2:65831045-65831064 | None:intergenic | 45.0% | |
GTTACAGAAAGCAGCTCAGA+TGG | + | chr2_2:65831065-65831084 | Msa0265500:CDS | 45.0% | |
TCATCTCAGTCCATGTTGAG+TGG | + | chr2_2:65831099-65831118 | Msa0265500:CDS | 45.0% | |
CATCTCAGTCCATGTTGAGT+GGG | + | chr2_2:65831100-65831119 | Msa0265500:CDS | 45.0% | |
AGTGATATCCTCACCATTGC+TGG | + | chr2_2:65831441-65831460 | Msa0265500:CDS | 45.0% | |
TATCCTCACCATTGCTGGTA+TGG | + | chr2_2:65831446-65831465 | Msa0265500:CDS | 45.0% | |
ATCCTCACCATTGCTGGTAT+GGG | + | chr2_2:65831447-65831466 | Msa0265500:CDS | 45.0% | |
! | CTTGATGATCGGAGTTGGAA+GGG | - | chr2_2:65831485-65831504 | None:intergenic | 45.0% |
! | GTTTGCTTGATGATCGGAGT+TGG | - | chr2_2:65831490-65831509 | None:intergenic | 45.0% |
!! | CTTCCCATGGTTTTTGGGAA+TGG | - | chr2_2:65831512-65831531 | None:intergenic | 45.0% |
CATTCCCAAAAACCATGGGA+AGG | + | chr2_2:65831510-65831529 | Msa0265500:CDS | 45.0% | |
CACTATTCTTCCCAAAGGGA+AGG | + | chr2_2:65831626-65831645 | Msa0265500:three_prime_UTR | 45.0% | |
AGAAACCTTCCTGGCAATCC+AGG | + | chr2_2:65829306-65829325 | Msa0265500:CDS | 50.0% | |
ATGAACCTGGATTGCCAGGA+AGG | - | chr2_2:65829314-65829333 | None:intergenic | 50.0% | |
GCGTAGCTTCTGCAAACTCA+CGG | + | chr2_2:65829625-65829644 | Msa0265500:intron | 50.0% | |
!! | TGGTGCACACAAGTTGGTTC+TGG | - | chr2_2:65829961-65829980 | None:intergenic | 50.0% |
CATGACCCATCAAGAGCCTT+GGG | + | chr2_2:65829979-65829998 | Msa0265500:CDS | 50.0% | |
ATGACCCATCAAGAGCCTTG+GGG | + | chr2_2:65829980-65829999 | Msa0265500:CDS | 50.0% | |
! | GAAAGCACGGTGAGAAGAAG+TGG | + | chr2_2:65830034-65830053 | Msa0265500:CDS | 50.0% |
ACTGTGGAACCCTCTTCTCA+AGG | + | chr2_2:65830145-65830164 | Msa0265500:CDS | 50.0% | |
CAGAGCCTTCTGTGATGCAT+TGG | + | chr2_2:65830726-65830745 | Msa0265500:CDS | 50.0% | |
CTCAGCCAATGCATCACAGA+AGG | - | chr2_2:65830734-65830753 | None:intergenic | 50.0% | |
!! | CTTCTGTGATGCATTGGCTG+AGG | + | chr2_2:65830732-65830751 | Msa0265500:CDS | 50.0% |
!! | GGTTGGTAGGATGGAAGTGT+AGG | - | chr2_2:65831006-65831025 | None:intergenic | 50.0% |
! | CAACATGGACTGAGATGAGC+TGG | - | chr2_2:65831097-65831116 | None:intergenic | 50.0% |
CAATAGACACGTGACCCTGT+TGG | - | chr2_2:65831131-65831150 | None:intergenic | 50.0% | |
!! | ACCAATGATGATGACGGTGC+CGG | + | chr2_2:65831360-65831379 | Msa0265500:CDS | 50.0% |
TTCCCATACCAGCAATGGTG+AGG | - | chr2_2:65831452-65831471 | None:intergenic | 50.0% | |
GCAACTTCCCATACCAGCAA+TGG | - | chr2_2:65831457-65831476 | None:intergenic | 50.0% | |
! | GCTTGATGATCGGAGTTGGA+AGG | - | chr2_2:65831486-65831505 | None:intergenic | 50.0% |
GGGTCATGGTGCACACAAGT+TGG | - | chr2_2:65829967-65829986 | None:intergenic | 55.0% | |
! | CCAAGGCTCTTGATGGGTCA+TGG | - | chr2_2:65829981-65830000 | None:intergenic | 55.0% |
CCATGACCCATCAAGAGCCT+TGG | + | chr2_2:65829978-65829997 | Msa0265500:CDS | 55.0% | |
TGACCCATCAAGAGCCTTGG+GGG | + | chr2_2:65829981-65830000 | Msa0265500:CDS | 55.0% | |
GATACCAGTTAGGTCCCCCA+AGG | - | chr2_2:65829998-65830017 | None:intergenic | 55.0% | |
!! | GCAGATGCTGGTTGGTAGGA+TGG | - | chr2_2:65831015-65831034 | None:intergenic | 55.0% |
! | AGCTGCAGATGCTGGTTGGT+AGG | - | chr2_2:65831019-65831038 | None:intergenic | 55.0% |
GTGAAGCTGCAGATGCTGGT+TGG | - | chr2_2:65831023-65831042 | None:intergenic | 55.0% | |
TGAGGTGAAGCTGCAGATGC+TGG | - | chr2_2:65831027-65831046 | None:intergenic | 55.0% | |
! | TTGGTGGGTCCCACTCAACA+TGG | - | chr2_2:65831112-65831131 | None:intergenic | 55.0% |
TTGAGTGGGACCCACCAACA+GGG | + | chr2_2:65831114-65831133 | Msa0265500:CDS | 55.0% | |
AGACACGTGACCCTGTTGGT+GGG | - | chr2_2:65831127-65831146 | None:intergenic | 55.0% | |
TAGACACGTGACCCTGTTGG+TGG | - | chr2_2:65831128-65831147 | None:intergenic | 55.0% | |
GGCACCGTCATCATCATTGG+TGG | - | chr2_2:65831361-65831380 | None:intergenic | 55.0% | |
ACCGGCACCGTCATCATCAT+TGG | - | chr2_2:65831364-65831383 | None:intergenic | 55.0% | |
TGCATTGTTTCCTCCGGCAC+CGG | - | chr2_2:65831382-65831401 | None:intergenic | 55.0% | |
CCGAATGGTCCCTTCCCTTT+GGG | - | chr2_2:65831639-65831658 | None:intergenic | 55.0% | |
CCCAAAGGGAAGGGACCATT+CGG | + | chr2_2:65831636-65831655 | Msa0265500:three_prime_UTR | 55.0% | |
TCCGAATGGTCCCTTCCCTT+TGG | - | chr2_2:65831640-65831659 | None:intergenic | 55.0% | |
GGTCCCCCAAGGCTCTTGAT+GGG | - | chr2_2:65829987-65830006 | None:intergenic | 60.0% | |
AGGTCCCCCAAGGCTCTTGA+TGG | - | chr2_2:65829988-65830007 | None:intergenic | 60.0% | |
AGAGCCTTGGGGGACCTAAC+TGG | + | chr2_2:65829991-65830010 | Msa0265500:CDS | 60.0% | |
GTTGAGTGGGACCCACCAAC+AGG | + | chr2_2:65831113-65831132 | Msa0265500:CDS | 60.0% | |
!! | GATGATGACGGTGCCGGTGC+CGG | + | chr2_2:65831366-65831385 | Msa0265500:CDS | 65.0% |
!! | GATGACGGTGCCGGTGCCGG+AGG | + | chr2_2:65831369-65831388 | Msa0265500:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 65828628 | 65831786 | 65828628 | ID=Msa0265500;Name=Msa0265500 |
chr2_2 | mRNA | 65828628 | 65831786 | 65828628 | ID=Msa0265500-mRNA-1;Parent=Msa0265500;Name=Msa0265500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=480|1|1|1|1|1|3|247|483 |
chr2_2 | exon | 65828628 | 65829327 | 65828628 | ID=Msa0265500-mRNA-1:exon:20773;Parent=Msa0265500-mRNA-1 |
chr2_2 | exon | 65829770 | 65830166 | 65829770 | ID=Msa0265500-mRNA-1:exon:20774;Parent=Msa0265500-mRNA-1 |
chr2_2 | exon | 65830705 | 65831786 | 65830705 | ID=Msa0265500-mRNA-1:exon:20775;Parent=Msa0265500-mRNA-1 |
chr2_2 | five_prime_UTR | 65828628 | 65829107 | 65828628 | ID=Msa0265500-mRNA-1:five_prime_utr;Parent=Msa0265500-mRNA-1 |
chr2_2 | CDS | 65829108 | 65829327 | 65829108 | ID=Msa0265500-mRNA-1:cds;Parent=Msa0265500-mRNA-1 |
chr2_2 | CDS | 65829770 | 65830166 | 65829770 | ID=Msa0265500-mRNA-1:cds;Parent=Msa0265500-mRNA-1 |
chr2_2 | CDS | 65830705 | 65831539 | 65830705 | ID=Msa0265500-mRNA-1:cds;Parent=Msa0265500-mRNA-1 |
chr2_2 | three_prime_UTR | 65831540 | 65831786 | 65831540 | ID=Msa0265500-mRNA-1:three_prime_utr;Parent=Msa0265500-mRNA-1 |
Gene Sequence |
Protein sequence |