Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227380 | AES67712.1 | 83.838 | 297 | 16 | 3 | 12 | 287 | 96 | 381 | 6.51e-170 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227380 | sp|Q66GR3|BH130_ARATH | 32.463 | 268 | 109 | 11 | 50 | 274 | 79 | 317 | 1.67e-20 | 94.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227380 | G7IUE6 | 83.838 | 297 | 16 | 3 | 12 | 287 | 96 | 381 | 3.11e-170 | 489 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0227380 | Msa1125080 | 0.810415 | 1.165787e-50 | -8.615850e-47 |
| Msa0227380 | Msa1167220 | 0.808200 | 3.481239e-50 | -8.615850e-47 |
| Msa0227380 | Msa1453270 | 0.889109 | 3.251418e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227380 | MtrunA17_Chr2g0329041 | 86.620 | 284 | 8 | 2 | 12 | 274 | 96 | 370 | 1.72e-172 | 485 |
| Msa0227380 | MtrunA17_Chr4g0032951 | 46.528 | 288 | 95 | 12 | 15 | 274 | 137 | 393 | 1.40e-67 | 218 |
| Msa0227380 | MtrunA17_Chr1g0174271 | 37.801 | 291 | 125 | 10 | 26 | 274 | 60 | 336 | 5.78e-37 | 136 |
| Msa0227380 | MtrunA17_Chr7g0258181 | 33.040 | 227 | 105 | 7 | 82 | 284 | 87 | 290 | 6.25e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227380 | AT2G42280.1 | 32.463 | 268 | 109 | 11 | 50 | 274 | 79 | 317 | 1.70e-21 | 94.4 |
| Msa0227380 | AT2G42280.3 | 32.463 | 268 | 109 | 11 | 50 | 274 | 79 | 317 | 2.75e-21 | 93.6 |
| Msa0227380 | AT1G51140.1 | 33.333 | 213 | 93 | 8 | 88 | 273 | 151 | 341 | 1.87e-15 | 77.0 |
| Msa0227380 | AT2G42280.2 | 29.646 | 226 | 108 | 10 | 50 | 253 | 79 | 275 | 1.11e-11 | 65.1 |
Find 93 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCTTTCTTCAACAATTA+TGG | 0.131409 | 2_1:-78291146 | Msa0227380:three_prime_UTR |
| TAGATCCAATTTAAGCATTT+AGG | 0.157031 | 2_1:-78291032 | Msa0227380:three_prime_UTR |
| TGTACAGATTTGTAATAATT+TGG | 0.171797 | 2_1:-78291289 | Msa0227380:three_prime_UTR |
| GCCATTTCAGATGAAGTATT+TGG | 0.195078 | 2_1:+78292196 | None:intergenic |
| TTCCTTGAAGTAGAAAATTT+TGG | 0.197445 | 2_1:+78292604 | None:intergenic |
| CGTACATATTTGTTATTATA+CGG | 0.199213 | 2_1:+78290976 | None:intergenic |
| ATAGATTTCATCACCAAATA+TGG | 0.204816 | 2_1:+78291007 | None:intergenic |
| TCTCAAATTAACATTGAAAA+TGG | 0.226358 | 2_1:-78293359 | Msa0227380:intron |
| TGGGCCCTAAATGCTTAAAT+TGG | 0.246809 | 2_1:+78291027 | None:intergenic |
| AGATCCAATTTAAGCATTTA+GGG | 0.267087 | 2_1:-78291031 | Msa0227380:three_prime_UTR |
| CCAAATCAGAATGTTTCTTC+TGG | 0.278715 | 2_1:-78293491 | Msa0227380:CDS |
| AAGCATTTAGGGCCCATATT+TGG | 0.290567 | 2_1:-78291020 | Msa0227380:three_prime_UTR |
| CTTCTTTCTTCAACAATTAT+GGG | 0.299148 | 2_1:-78291145 | Msa0227380:three_prime_UTR |
| GGGGTGAATGAATTTATCTT+TGG | 0.299991 | 2_1:+78291211 | None:intergenic |
| CGTTTACGTTTCACATTGAA+TGG | 0.311932 | 2_1:-78290955 | Msa0227380:three_prime_UTR |
| CATGGTACCTTATCCATGTT+TGG | 0.320678 | 2_1:+78291673 | None:intergenic |
| TAAATTGGCTTCAGGTTAGA+AGG | 0.325551 | 2_1:-78291738 | Msa0227380:intron |
| CCAGAAGAAACATTCTGATT+TGG | 0.339425 | 2_1:+78293491 | None:intergenic |
| ATGGTTGATTAGAATGAAAC+AGG | 0.344190 | 2_1:-78292262 | Msa0227380:intron |
| AATGAAGAAAATGAAGCTTT+TGG | 0.348594 | 2_1:-78292502 | Msa0227380:CDS |
| ATGAGAGGAATGGGAACTTT+AGG | 0.362085 | 2_1:-78292652 | Msa0227380:CDS |
| GAAGATGGAGATAAATTAGT+AGG | 0.368545 | 2_1:-78291174 | Msa0227380:three_prime_UTR |
| GCCAAATACTTCATCTGAAA+TGG | 0.370699 | 2_1:-78292197 | Msa0227380:CDS |
| AAGTCATGGTAACGAATATA+TGG | 0.373522 | 2_1:-78292476 | Msa0227380:CDS |
| AATGTTTCTTCTGGTTTAGA+TGG | 0.373647 | 2_1:-78293482 | Msa0227380:CDS |
| ATATAATGAATTTGTATTTG+AGG | 0.389307 | 2_1:-78290871 | Msa0227380:three_prime_UTR |
| AGGACATTCTAATTCTCCTT+TGG | 0.389735 | 2_1:-78292236 | Msa0227380:CDS |
| TCTTCAATGTTGGTGGTGTT+TGG | 0.389909 | 2_1:-78290816 | Msa0227380:three_prime_UTR |
| AATCAATCAAACTATTCATC+AGG | 0.391137 | 2_1:-78292574 | Msa0227380:CDS |
| TAACGAATATATGGATTATC+AGG | 0.397601 | 2_1:-78292467 | Msa0227380:CDS |
| AACTCTGTTCCTTCTTCTCA+TGG | 0.404649 | 2_1:-78293545 | Msa0227380:CDS |
| TATTTGGTGATGAAATCTAT+TGG | 0.406590 | 2_1:-78291004 | Msa0227380:three_prime_UTR |
| AACAATTATGGGAACTAGCT+AGG | 0.422253 | 2_1:-78291134 | Msa0227380:three_prime_UTR |
| TGGATTATCAGGTTGATACT+TGG | 0.436048 | 2_1:-78292456 | Msa0227380:CDS |
| TTCATCTGAAATGGCAGCTA+TGG | 0.443352 | 2_1:-78292188 | Msa0227380:CDS |
| CTAAAATTAGTGAGCGTATG+AGG | 0.443405 | 2_1:-78291714 | Msa0227380:CDS |
| AATTAAGTTGAGTGTAATTG+AGG | 0.448480 | 2_1:-78291093 | Msa0227380:three_prime_UTR |
| TAACAAATAAAAGCTAATCT+AGG | 0.452171 | 2_1:+78291246 | None:intergenic |
| AGCAGCAACAACAACAATAA+CGG | 0.452797 | 2_1:-78291339 | Msa0227380:CDS |
| CATCTTCATTATGTACATCA+AGG | 0.461161 | 2_1:+78291190 | None:intergenic |
| ATGGTACCTTATCCATGTTT+GGG | 0.462347 | 2_1:+78291674 | None:intergenic |
| TATGTTAGTATGAGAGGAAT+GGG | 0.466243 | 2_1:-78292661 | Msa0227380:CDS |
| TATGAGGAAGCTACAAGATC+TGG | 0.475457 | 2_1:-78291698 | Msa0227380:CDS |
| TACGTTTCACATTGAATGGT+TGG | 0.486627 | 2_1:-78290951 | Msa0227380:three_prime_UTR |
| AATGAAAAGAATAATATAAA+CGG | 0.487875 | 2_1:+78290844 | None:intergenic |
| TTTCCACCATGATTCTTCAC+TGG | 0.490723 | 2_1:+78293428 | None:intergenic |
| TAGATTTCATCACCAAATAT+GGG | 0.495278 | 2_1:+78291008 | None:intergenic |
| TCTGGTCCCAAACATGGATA+AGG | 0.497918 | 2_1:-78291680 | Msa0227380:intron |
| GTTGTTGTTGCTGCTTGTGT+GGG | 0.500762 | 2_1:+78291347 | None:intergenic |
| ACAACAACAAGATCAGGGTT+TGG | 0.506743 | 2_1:-78293642 | Msa0227380:CDS |
| ATTAAGTTGAGTGTAATTGA+GGG | 0.507443 | 2_1:-78291092 | Msa0227380:three_prime_UTR |
| CTTGATGTACATAATGAAGA+TGG | 0.510561 | 2_1:-78291189 | Msa0227380:three_prime_UTR |
| TGTTGTTGTTGCTGCTTGTG+TGG | 0.515976 | 2_1:+78291346 | None:intergenic |
| CACAGCAGATATGTTGGACT+TGG | 0.518004 | 2_1:-78291545 | Msa0227380:CDS |
| AACAGTGAAAGAAGAAGAAG+AGG | 0.518044 | 2_1:-78293687 | Msa0227380:five_prime_UTR |
| TGGTGTTTGGTAAAGCCAAC+TGG | 0.518331 | 2_1:-78290803 | Msa0227380:three_prime_UTR |
| TCACATTGAATGGTTGGCGT+TGG | 0.523297 | 2_1:-78290945 | Msa0227380:three_prime_UTR |
| GCAGGTTATGTTAGTATGAG+AGG | 0.524043 | 2_1:-78292667 | Msa0227380:intron |
| ATTTGAGAAAATAATCCAGC+TGG | 0.524222 | 2_1:+78293374 | None:intergenic |
| ATCTTCATTATGTACATCAA+GGG | 0.529039 | 2_1:+78291191 | None:intergenic |
| GGATTATCAGGTTGATACTT+GGG | 0.529420 | 2_1:-78292455 | Msa0227380:CDS |
| AACTAGCTAGGGAAGAAAAG+TGG | 0.533515 | 2_1:-78291122 | Msa0227380:three_prime_UTR |
| AACAAACACAGCAGATATGT+TGG | 0.533839 | 2_1:-78291551 | Msa0227380:CDS |
| GCGTTGGATTATAACATGGT+GGG | 0.535962 | 2_1:-78290929 | Msa0227380:three_prime_UTR |
| AAGATGGAGATAAATTAGTA+GGG | 0.538731 | 2_1:-78291173 | Msa0227380:three_prime_UTR |
| ACATTCTGATTTGGCAAAGG+TGG | 0.545087 | 2_1:+78293500 | None:intergenic |
| ACAATTATGGGAACTAGCTA+GGG | 0.545940 | 2_1:-78291133 | Msa0227380:three_prime_UTR |
| AGATATGTTGGACTTGGCTG+TGG | 0.548724 | 2_1:-78291539 | Msa0227380:CDS |
| AATTATTACAAATCTGTACA+TGG | 0.552431 | 2_1:+78291292 | None:intergenic |
| AGACCTTCAAAAGCAAGCTC+AGG | 0.554514 | 2_1:-78291506 | Msa0227380:intron |
| GAAACATTCTGATTTGGCAA+AGG | 0.556566 | 2_1:+78293497 | None:intergenic |
| TTATGTTAGTATGAGAGGAA+TGG | 0.558938 | 2_1:-78292662 | Msa0227380:CDS |
| AGACATAGTAGTTCACCAGC+TGG | 0.569208 | 2_1:-78293389 | Msa0227380:CDS |
| TTGCAGCCAGTGAAGAATCA+TGG | 0.569699 | 2_1:-78293434 | Msa0227380:CDS |
| ATGTCAACAATAGCTGAAGT+TGG | 0.572331 | 2_1:-78292547 | Msa0227380:CDS |
| GGCGTTGGATTATAACATGG+TGG | 0.573748 | 2_1:-78290930 | Msa0227380:three_prime_UTR |
| ACAAGATCTGGTCCCAAACA+TGG | 0.576424 | 2_1:-78291686 | Msa0227380:CDS |
| ATCAATCAAACTATTCATCA+GGG | 0.580340 | 2_1:-78292573 | Msa0227380:CDS |
| ATAGCTGAAGTTGGTGACAA+AGG | 0.592602 | 2_1:-78292538 | Msa0227380:CDS |
| AATCTAGGTAGATTCTAACT+TGG | 0.597414 | 2_1:+78291261 | None:intergenic |
| AATTGGATCTACTTACCACA+TGG | 0.601595 | 2_1:+78291044 | None:intergenic |
| TTCAATCAACAATGAACATG+TGG | 0.608573 | 2_1:-78293618 | Msa0227380:CDS |
| GATTAGAATGAAACAGGAGG+AGG | 0.610884 | 2_1:-78292256 | Msa0227380:intron |
| ACTAGCTAGGGAAGAAAAGT+GGG | 0.615706 | 2_1:-78291121 | Msa0227380:three_prime_UTR |
| TGCAAATGAGAACCACCAGT+TGG | 0.617548 | 2_1:+78290788 | None:intergenic |
| ATGATGTCTGAAAATGTTGG+TGG | 0.620048 | 2_1:-78292421 | Msa0227380:CDS |
| ATACTCAATTGATGAGCCAA+AGG | 0.626112 | 2_1:+78292220 | None:intergenic |
| TCTTCATTATGTACATCAAG+GGG | 0.648537 | 2_1:+78291192 | None:intergenic |
| GAAATGATGTCTGAAAATGT+TGG | 0.668717 | 2_1:-78292424 | Msa0227380:CDS |
| GTTGATTAGAATGAAACAGG+AGG | 0.674543 | 2_1:-78292259 | Msa0227380:intron |
| TGTTTGGTAAAGCCAACTGG+TGG | 0.692158 | 2_1:-78290800 | Msa0227380:three_prime_UTR |
| CAGCCAGTGAAGAATCATGG+TGG | 0.713307 | 2_1:-78293431 | Msa0227380:CDS |
| GTTGGCGTTGGATTATAACA+TGG | 0.729880 | 2_1:-78290933 | Msa0227380:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTAGTTATTACTTATT+AGG | - | chr2_1:78291679-78291698 | Msa0227380:intron | 10.0% |
| !! | TTAAAGAAATAAAATAGTTT+GGG | + | chr2_1:78291718-78291737 | None:intergenic | 10.0% |
| !! | AATGAAAAGAATAATATAAA+CGG | + | chr2_1:78293603-78293622 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTCTCTTTAAAGT+AGG | + | chr2_1:78291476-78291495 | None:intergenic | 15.0% |
| !!! | TTCAAATTTAACATTTTTCT+AGG | + | chr2_1:78291507-78291526 | None:intergenic | 15.0% |
| !! | TATATATTAAAGATCTCTTT+AGG | - | chr2_1:78291560-78291579 | Msa0227380:CDS | 15.0% |
| !! | ATATATTAAAGATCTCTTTA+GGG | - | chr2_1:78291561-78291580 | Msa0227380:CDS | 15.0% |
| !!! | TTTTAATATTTGCTATTATG+TGG | - | chr2_1:78291595-78291614 | Msa0227380:intron | 15.0% |
| !! | TAAAGAAATAAAATAGTTTG+GGG | + | chr2_1:78291717-78291736 | None:intergenic | 15.0% |
| !! | GTTAAAGAAATAAAATAGTT+TGG | + | chr2_1:78291719-78291738 | None:intergenic | 15.0% |
| !! | AACAAAAGAAAAGTAATATA+GGG | + | chr2_1:78292546-78292565 | None:intergenic | 15.0% |
| !! | AAACAAAAGAAAAGTAATAT+AGG | + | chr2_1:78292547-78292566 | None:intergenic | 15.0% |
| !!! | ATATTACTTTTCTTTTGTTT+AGG | - | chr2_1:78292547-78292566 | Msa0227380:CDS | 15.0% |
| !! | CTAAAACTAAATATGTAAAT+TGG | + | chr2_1:78292583-78292602 | None:intergenic | 15.0% |
| !! | ATATAATGAATTTGTATTTG+AGG | - | chr2_1:78293573-78293592 | Msa0227380:CDS | 15.0% |
| !! | TCTCAAATTAACATTGAAAA+TGG | - | chr2_1:78291085-78291104 | Msa0227380:three_prime_UTR | 20.0% |
| !! | TGAAGAAAATGAATTGTAAA+AGG | - | chr2_1:78291346-78291365 | Msa0227380:CDS | 20.0% |
| !!! | AATTTGAAAATTTTCTTGTC+AGG | - | chr2_1:78291519-78291538 | Msa0227380:CDS | 20.0% |
| !!! | ATTTGAAAATTTTCTTGTCA+GGG | - | chr2_1:78291520-78291539 | Msa0227380:CDS | 20.0% |
| !!! | TACTATTAAGACATGATTTT+TGG | - | chr2_1:78292608-78292627 | Msa0227380:CDS | 20.0% |
| !!! | ACTATTAAGACATGATTTTT+GGG | - | chr2_1:78292609-78292628 | Msa0227380:CDS | 20.0% |
| !! | CATTCACATAAATTAATGTA+TGG | + | chr2_1:78292833-78292852 | None:intergenic | 20.0% |
| !! | AATTATTACAAATCTGTACA+TGG | + | chr2_1:78293155-78293174 | None:intergenic | 20.0% |
| !! | TGTACAGATTTGTAATAATT+TGG | - | chr2_1:78293155-78293174 | Msa0227380:intron | 20.0% |
| !! | TAACAAATAAAAGCTAATCT+AGG | + | chr2_1:78293201-78293220 | None:intergenic | 20.0% |
| !!! | CGTACATATTTGTTATTATA+CGG | + | chr2_1:78293471-78293490 | None:intergenic | 20.0% |
| !!! | TTTAGATGGAAGTTTTTCAA+TGG | - | chr2_1:78290976-78290995 | Msa0227380:three_prime_UTR | 25.0% |
| !!! | TTAGATGGAAGTTTTTCAAT+GGG | - | chr2_1:78290977-78290996 | Msa0227380:three_prime_UTR | 25.0% |
| ! | TGTGAGTAAAATTTCAGATT+TGG | + | chr2_1:78291198-78291217 | None:intergenic | 25.0% |
| ! | TCTAATAAAATCCACCATTT+CGG | + | chr2_1:78291298-78291317 | None:intergenic | 25.0% |
| !! | ATGAATTGTAAAAGGTTTTC+TGG | - | chr2_1:78291354-78291373 | Msa0227380:CDS | 25.0% |
| !! | TTTGAAAATTTTCTTGTCAG+GGG | - | chr2_1:78291521-78291540 | Msa0227380:CDS | 25.0% |
| ! | AATAACTAATATTCCCACTA+GGG | + | chr2_1:78291672-78291691 | None:intergenic | 25.0% |
| ! | TAATAACTAATATTCCCACT+AGG | + | chr2_1:78291673-78291692 | None:intergenic | 25.0% |
| ! | TGATGTTATGCAAGTTTAAT+TGG | - | chr2_1:78291755-78291774 | Msa0227380:intron | 25.0% |
| !! | AACCAAAATTTTCTACTTCA+AGG | - | chr2_1:78291838-78291857 | Msa0227380:intron | 25.0% |
| !! | TTCCTTGAAGTAGAAAATTT+TGG | + | chr2_1:78291843-78291862 | None:intergenic | 25.0% |
| ! | AATCAATCAAACTATTCATC+AGG | - | chr2_1:78291870-78291889 | Msa0227380:intron | 25.0% |
| ! | ATCAATCAAACTATTCATCA+GGG | - | chr2_1:78291871-78291890 | Msa0227380:intron | 25.0% |
| !! | AATGAAGAAAATGAAGCTTT+TGG | - | chr2_1:78291942-78291961 | Msa0227380:intron | 25.0% |
| !! | TAACGAATATATGGATTATC+AGG | - | chr2_1:78291977-78291996 | Msa0227380:intron | 25.0% |
| !! | GATTCAAAACAACAATTTTC+TGG | - | chr2_1:78292068-78292087 | Msa0227380:intron | 25.0% |
| !!! | ATTTTCTGGTTTAAATGTTC+AGG | - | chr2_1:78292082-78292101 | Msa0227380:intron | 25.0% |
| ! | TCTTAAGTGTAGTTTCTTAA+TGG | - | chr2_1:78292135-78292154 | Msa0227380:intron | 25.0% |
| !! | CATTTGACATGATTTTGTTA+TGG | - | chr2_1:78292163-78292182 | Msa0227380:CDS | 25.0% |
| !!! | TTTTTACCTTAGTTCTTATG+AGG | - | chr2_1:78292393-78292412 | Msa0227380:CDS | 25.0% |
| ! | TAGAATTATCTATAACCAAG+TGG | + | chr2_1:78292509-78292528 | None:intergenic | 25.0% |
| !! | CTATTAAGACATGATTTTTG+GGG | - | chr2_1:78292610-78292629 | Msa0227380:CDS | 25.0% |
| ! | CTCTTAACACATCATTAAAT+TGG | - | chr2_1:78292691-78292710 | Msa0227380:intron | 25.0% |
| ! | GTGTTGGAAGAAAATTAATT+AGG | + | chr2_1:78293037-78293056 | None:intergenic | 25.0% |
| ! | ATCTTCATTATGTACATCAA+GGG | + | chr2_1:78293256-78293275 | None:intergenic | 25.0% |
| ! | AAGATGGAGATAAATTAGTA+GGG | - | chr2_1:78293271-78293290 | Msa0227380:intron | 25.0% |
| ! | ACTTCTTTCTTCAACAATTA+TGG | - | chr2_1:78293298-78293317 | Msa0227380:intron | 25.0% |
| ! | CTTCTTTCTTCAACAATTAT+GGG | - | chr2_1:78293299-78293318 | Msa0227380:intron | 25.0% |
| !!! | AATTAAGTTGAGTGTAATTG+AGG | - | chr2_1:78293351-78293370 | Msa0227380:intron | 25.0% |
| !!! | ATTAAGTTGAGTGTAATTGA+GGG | - | chr2_1:78293352-78293371 | Msa0227380:intron | 25.0% |
| ! | TAGATCCAATTTAAGCATTT+AGG | - | chr2_1:78293412-78293431 | Msa0227380:CDS | 25.0% |
| ! | AGATCCAATTTAAGCATTTA+GGG | - | chr2_1:78293413-78293432 | Msa0227380:CDS | 25.0% |
| ! | TAGATTTCATCACCAAATAT+GGG | + | chr2_1:78293439-78293458 | None:intergenic | 25.0% |
| ! | ATAGATTTCATCACCAAATA+TGG | + | chr2_1:78293440-78293459 | None:intergenic | 25.0% |
| !!! | TATTTGGTGATGAAATCTAT+TGG | - | chr2_1:78293440-78293459 | Msa0227380:CDS | 25.0% |
| ! | TATAACCAACAAAAATGTGT+CGG | + | chr2_1:78293551-78293570 | None:intergenic | 25.0% |
| !!! | TCATTTTGTTTCTTCAATGT+TGG | - | chr2_1:78293618-78293637 | Msa0227380:CDS | 25.0% |
| TTCAATCAACAATGAACATG+TGG | - | chr2_1:78290826-78290845 | Msa0227380:three_prime_UTR | 30.0% | |
| TGATAAAAACCATGAGAAGA+AGG | + | chr2_1:78290911-78290930 | None:intergenic | 30.0% | |
| !! | AATGTTTCTTCTGGTTTAGA+TGG | - | chr2_1:78290962-78290981 | Msa0227380:three_prime_UTR | 30.0% |
| !! | GTTTTTCAATGGGAGTTAAT+AGG | - | chr2_1:78290987-78291006 | Msa0227380:three_prime_UTR | 30.0% |
| ATTTGAGAAAATAATCCAGC+TGG | + | chr2_1:78291073-78291092 | None:intergenic | 30.0% | |
| ! | TTTTCTTTGTTACGCACTTT+TGG | - | chr2_1:78291133-78291152 | Msa0227380:three_prime_UTR | 30.0% |
| CTCGTTTCTGTTAAAATAGA+GGG | + | chr2_1:78291160-78291179 | None:intergenic | 30.0% | |
| TCTCGTTTCTGTTAAAATAG+AGG | + | chr2_1:78291161-78291180 | None:intergenic | 30.0% | |
| !!! | TACTGATTTTTGATCCGAAA+TGG | - | chr2_1:78291281-78291300 | Msa0227380:three_prime_UTR | 30.0% |
| !! | TTTCTCTTTAAAGTAGGACA+AGG | + | chr2_1:78291470-78291489 | None:intergenic | 30.0% |
| GTGAAAAAAAAAACCCTAGT+GGG | - | chr2_1:78291656-78291675 | Msa0227380:intron | 30.0% | |
| TTATGTTAGTATGAGAGGAA+TGG | - | chr2_1:78291782-78291801 | Msa0227380:intron | 30.0% | |
| TATGTTAGTATGAGAGGAAT+GGG | - | chr2_1:78291783-78291802 | Msa0227380:intron | 30.0% | |
| ! | AAGTCATGGTAACGAATATA+TGG | - | chr2_1:78291968-78291987 | Msa0227380:intron | 30.0% |
| GAAATGATGTCTGAAAATGT+TGG | - | chr2_1:78292020-78292039 | Msa0227380:intron | 30.0% | |
| ATGGTTGATTAGAATGAAAC+AGG | - | chr2_1:78292182-78292201 | Msa0227380:CDS | 30.0% | |
| ATCAATAATCCATACCCTTT+CGG | + | chr2_1:78292363-78292382 | None:intergenic | 30.0% | |
| CTCAAATGGTTAATAAGCTT+CGG | + | chr2_1:78292482-78292501 | None:intergenic | 30.0% | |
| GAACCTCAATGTACATATAA+TGG | + | chr2_1:78292636-78292655 | None:intergenic | 30.0% | |
| TTAAAACCAATCATGAAGCA+TGG | + | chr2_1:78292792-78292811 | None:intergenic | 30.0% | |
| GTGTTTGTTTGCTTCAAAAA+AGG | + | chr2_1:78292882-78292901 | None:intergenic | 30.0% | |
| AATCTAGGTAGATTCTAACT+TGG | + | chr2_1:78293186-78293205 | None:intergenic | 30.0% | |
| TCTTCATTATGTACATCAAG+GGG | + | chr2_1:78293255-78293274 | None:intergenic | 30.0% | |
| CATCTTCATTATGTACATCA+AGG | + | chr2_1:78293257-78293276 | None:intergenic | 30.0% | |
| CTTGATGTACATAATGAAGA+TGG | - | chr2_1:78293255-78293274 | Msa0227380:intron | 30.0% | |
| GAAGATGGAGATAAATTAGT+AGG | - | chr2_1:78293270-78293289 | Msa0227380:intron | 30.0% | |
| !! | TTTTGTTTCTTCAATGTTGG+TGG | - | chr2_1:78293621-78293640 | Msa0227380:CDS | 30.0% |
| AACAGTGAAAGAAGAAGAAG+AGG | - | chr2_1:78290757-78290776 | Msa0227380:three_prime_UTR | 35.0% | |
| ACAACAACAACAACAAGATC+AGG | - | chr2_1:78290796-78290815 | Msa0227380:three_prime_UTR | 35.0% | |
| CAACAACAACAACAAGATCA+GGG | - | chr2_1:78290797-78290816 | Msa0227380:three_prime_UTR | 35.0% | |
| !! | GAAACATTCTGATTTGGCAA+AGG | + | chr2_1:78290950-78290969 | None:intergenic | 35.0% |
| CCAGAAGAAACATTCTGATT+TGG | + | chr2_1:78290956-78290975 | None:intergenic | 35.0% | |
| CCAAATCAGAATGTTTCTTC+TGG | - | chr2_1:78290953-78290972 | Msa0227380:three_prime_UTR | 35.0% | |
| ! | TGATTTTTGATCCGAAATGG+TGG | - | chr2_1:78291284-78291303 | Msa0227380:three_prime_UTR | 35.0% |
| TAGTACACGTTACTAGTATG+TGG | - | chr2_1:78291384-78291403 | Msa0227380:intron | 35.0% | |
| TACTAGTATGTGGACTTGTA+AGG | - | chr2_1:78291394-78291413 | Msa0227380:intron | 35.0% | |
| TATTGAAGTTGTACATGCCA+CGG | + | chr2_1:78291426-78291445 | None:intergenic | 35.0% | |
| AAAGTAGGACAAGGAAAACT+GGG | + | chr2_1:78291461-78291480 | None:intergenic | 35.0% | |
| TAAAGTAGGACAAGGAAAAC+TGG | + | chr2_1:78291462-78291481 | None:intergenic | 35.0% | |
| ! | TTTGTACTTGTTGCAACAAG+TGG | - | chr2_1:78291634-78291653 | Msa0227380:intron | 35.0% |
| GGTGAAAAAAAAAACCCTAG+TGG | - | chr2_1:78291655-78291674 | Msa0227380:intron | 35.0% | |
| GTTATGCAAGTTTAATTGGC+AGG | - | chr2_1:78291759-78291778 | Msa0227380:intron | 35.0% | |
| ATGTCAACAATAGCTGAAGT+TGG | - | chr2_1:78291897-78291916 | Msa0227380:intron | 35.0% | |
| !! | TGGATTATCAGGTTGATACT+TGG | - | chr2_1:78291988-78292007 | Msa0227380:intron | 35.0% |
| !! | GGATTATCAGGTTGATACTT+GGG | - | chr2_1:78291989-78292008 | Msa0227380:intron | 35.0% |
| ATGATGTCTGAAAATGTTGG+TGG | - | chr2_1:78292023-78292042 | Msa0227380:intron | 35.0% | |
| GGTAGAATACTATCTAGCAT+TGG | - | chr2_1:78292103-78292122 | Msa0227380:intron | 35.0% | |
| GTTGATTAGAATGAAACAGG+AGG | - | chr2_1:78292185-78292204 | Msa0227380:CDS | 35.0% | |
| AGGACATTCTAATTCTCCTT+TGG | - | chr2_1:78292208-78292227 | Msa0227380:CDS | 35.0% | |
| ATACTCAATTGATGAGCCAA+AGG | + | chr2_1:78292227-78292246 | None:intergenic | 35.0% | |
| GCCAAATACTTCATCTGAAA+TGG | - | chr2_1:78292247-78292266 | Msa0227380:CDS | 35.0% | |
| ! | GCCATTTCAGATGAAGTATT+TGG | + | chr2_1:78292251-78292270 | None:intergenic | 35.0% |
| TACTTGCCTCATAAGAACTA+AGG | + | chr2_1:78292402-78292421 | None:intergenic | 35.0% | |
| TGGTTAATAAGCTTCGGTTA+AGG | + | chr2_1:78292476-78292495 | None:intergenic | 35.0% | |
| ! | CACATCATTAAATTGGCTTC+AGG | - | chr2_1:78292698-78292717 | Msa0227380:intron | 35.0% |
| ! | TAAATTGGCTTCAGGTTAGA+AGG | - | chr2_1:78292706-78292725 | Msa0227380:intron | 35.0% |
| CTAAAATTAGTGAGCGTATG+AGG | - | chr2_1:78292730-78292749 | Msa0227380:intron | 35.0% | |
| ATGGTACCTTATCCATGTTT+GGG | + | chr2_1:78292773-78292792 | None:intergenic | 35.0% | |
| AACAAACACAGCAGATATGT+TGG | - | chr2_1:78292893-78292912 | Msa0227380:intron | 35.0% | |
| TGAAGCTTCTATACAAGTGT+TGG | + | chr2_1:78293053-78293072 | None:intergenic | 35.0% | |
| AGCAGCAACAACAACAATAA+CGG | - | chr2_1:78293105-78293124 | Msa0227380:intron | 35.0% | |
| GGGGTGAATGAATTTATCTT+TGG | + | chr2_1:78293236-78293255 | None:intergenic | 35.0% | |
| AACAATTATGGGAACTAGCT+AGG | - | chr2_1:78293310-78293329 | Msa0227380:intron | 35.0% | |
| ACAATTATGGGAACTAGCTA+GGG | - | chr2_1:78293311-78293330 | Msa0227380:intron | 35.0% | |
| GTATGTACAAAAAGTCCATG+TGG | - | chr2_1:78293385-78293404 | Msa0227380:CDS | 35.0% | |
| AATTGGATCTACTTACCACA+TGG | + | chr2_1:78293403-78293422 | None:intergenic | 35.0% | |
| CGTTTACGTTTCACATTGAA+TGG | - | chr2_1:78293489-78293508 | Msa0227380:CDS | 35.0% | |
| TACGTTTCACATTGAATGGT+TGG | - | chr2_1:78293493-78293512 | Msa0227380:CDS | 35.0% | |
| ACAACAACAAGATCAGGGTT+TGG | - | chr2_1:78290802-78290821 | Msa0227380:three_prime_UTR | 40.0% | |
| AACTCTGTTCCTTCTTCTCA+TGG | - | chr2_1:78290899-78290918 | Msa0227380:three_prime_UTR | 40.0% | |
| !! | ACATTCTGATTTGGCAAAGG+TGG | + | chr2_1:78290947-78290966 | None:intergenic | 40.0% |
| TTTCCACCATGATTCTTCAC+TGG | + | chr2_1:78291019-78291038 | None:intergenic | 40.0% | |
| GCAGGTTATGTTAGTATGAG+AGG | - | chr2_1:78291777-78291796 | Msa0227380:intron | 40.0% | |
| ATGAGAGGAATGGGAACTTT+AGG | - | chr2_1:78291792-78291811 | Msa0227380:intron | 40.0% | |
| !! | ATAGCTGAAGTTGGTGACAA+AGG | - | chr2_1:78291906-78291925 | Msa0227380:intron | 40.0% |
| ! | GAAGCTTTTGGTGAAAGTCA+TGG | - | chr2_1:78291954-78291973 | Msa0227380:intron | 40.0% |
| GATTAGAATGAAACAGGAGG+AGG | - | chr2_1:78292188-78292207 | Msa0227380:CDS | 40.0% | |
| ! | TTCATCTGAAATGGCAGCTA+TGG | - | chr2_1:78292256-78292275 | Msa0227380:intron | 40.0% |
| AACCATTTGAGCAAACCACT+TGG | - | chr2_1:78292491-78292510 | Msa0227380:CDS | 40.0% | |
| !! | AACCAAGTGGTTTGCTCAAA+TGG | + | chr2_1:78292496-78292515 | None:intergenic | 40.0% |
| GGGCCATTATATGTACATTG+AGG | - | chr2_1:78292630-78292649 | Msa0227380:CDS | 40.0% | |
| TATGAGGAAGCTACAAGATC+TGG | - | chr2_1:78292746-78292765 | Msa0227380:intron | 40.0% | |
| CATGGTACCTTATCCATGTT+TGG | + | chr2_1:78292774-78292793 | None:intergenic | 40.0% | |
| ! | AAGGTACCATGCTTCATGAT+TGG | - | chr2_1:78292783-78292802 | Msa0227380:intron | 40.0% |
| !! | ATACCTGAGCTTGCTTTTGA+AGG | + | chr2_1:78292944-78292963 | None:intergenic | 40.0% |
| AACTAGCTAGGGAAGAAAAG+TGG | - | chr2_1:78293322-78293341 | Msa0227380:intron | 40.0% | |
| ACTAGCTAGGGAAGAAAAGT+GGG | - | chr2_1:78293323-78293342 | Msa0227380:intron | 40.0% | |
| TGGGCCCTAAATGCTTAAAT+TGG | + | chr2_1:78293420-78293439 | None:intergenic | 40.0% | |
| ! | AAGCATTTAGGGCCCATATT+TGG | - | chr2_1:78293424-78293443 | Msa0227380:CDS | 40.0% |
| ! | GTTGGCGTTGGATTATAACA+TGG | - | chr2_1:78293511-78293530 | Msa0227380:CDS | 40.0% |
| GCGTTGGATTATAACATGGT+GGG | - | chr2_1:78293515-78293534 | Msa0227380:CDS | 40.0% | |
| ! | ACAAAAATGTGTCGGTGTCT+CGG | + | chr2_1:78293543-78293562 | None:intergenic | 40.0% |
| ! | AGACACCGACACATTTTTGT+TGG | - | chr2_1:78293543-78293562 | Msa0227380:CDS | 40.0% |
| !! | TCTTCAATGTTGGTGGTGTT+TGG | - | chr2_1:78293628-78293647 | Msa0227380:CDS | 40.0% |
| TTGCAGCCAGTGAAGAATCA+TGG | - | chr2_1:78291010-78291029 | Msa0227380:three_prime_UTR | 45.0% | |
| AGACATAGTAGTTCACCAGC+TGG | - | chr2_1:78291055-78291074 | Msa0227380:three_prime_UTR | 45.0% | |
| ! | CGCTTGGCACGAATTTTCAT+CGG | + | chr2_1:78292311-78292330 | None:intergenic | 45.0% |
| ATGAAAATTCGTGCCAAGCG+AGG | - | chr2_1:78292311-78292330 | Msa0227380:intron | 45.0% | |
| ACAAGATCTGGTCCCAAACA+TGG | - | chr2_1:78292758-78292777 | Msa0227380:intron | 45.0% | |
| TCTGGTCCCAAACATGGATA+AGG | - | chr2_1:78292764-78292783 | Msa0227380:intron | 45.0% | |
| CACAGCAGATATGTTGGACT+TGG | - | chr2_1:78292899-78292918 | Msa0227380:intron | 45.0% | |
| AGATATGTTGGACTTGGCTG+TGG | - | chr2_1:78292905-78292924 | Msa0227380:intron | 45.0% | |
| AGACCTTCAAAAGCAAGCTC+AGG | - | chr2_1:78292938-78292957 | Msa0227380:intron | 45.0% | |
| ! | GTTGTTGTTGCTGCTTGTGT+GGG | + | chr2_1:78293100-78293119 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGCTGCTTGTG+TGG | + | chr2_1:78293101-78293120 | None:intergenic | 45.0% |
| TCACATTGAATGGTTGGCGT+TGG | - | chr2_1:78293499-78293518 | Msa0227380:CDS | 45.0% | |
| ! | GGCGTTGGATTATAACATGG+TGG | - | chr2_1:78293514-78293533 | Msa0227380:CDS | 45.0% |
| TGGTGTTTGGTAAAGCCAAC+TGG | - | chr2_1:78293641-78293660 | Msa0227380:CDS | 45.0% | |
| TGTTTGGTAAAGCCAACTGG+TGG | - | chr2_1:78293644-78293663 | Msa0227380:CDS | 45.0% | |
| TGCAAATGAGAACCACCAGT+TGG | + | chr2_1:78293659-78293678 | None:intergenic | 45.0% | |
| CAGCCAGTGAAGAATCATGG+TGG | - | chr2_1:78291013-78291032 | Msa0227380:three_prime_UTR | 50.0% | |
| !! | GACTTGTAAGGTACTGTCCG+TGG | - | chr2_1:78291406-78291425 | Msa0227380:intron | 50.0% |
| TTCGGCAATGCTTCTTGGGT+GGG | + | chr2_1:78292345-78292364 | None:intergenic | 50.0% | |
| TTTCGGCAATGCTTCTTGGG+TGG | + | chr2_1:78292346-78292365 | None:intergenic | 50.0% | |
| !! | ACCCAAGAAGCATTGCCGAA+AGG | - | chr2_1:78292345-78292364 | Msa0227380:intron | 50.0% |
| CCCTTTCGGCAATGCTTCTT+GGG | + | chr2_1:78292349-78292368 | None:intergenic | 50.0% | |
| !! | CCCAAGAAGCATTGCCGAAA+GGG | - | chr2_1:78292346-78292365 | Msa0227380:intron | 50.0% |
| ACCCTTTCGGCAATGCTTCT+TGG | + | chr2_1:78292350-78292369 | None:intergenic | 50.0% | |
| !! | GAAGCATTGCCGAAAGGGTA+TGG | - | chr2_1:78292351-78292370 | Msa0227380:intron | 50.0% |
| GGCAATGCTTCTTGGGTGGG+TGG | + | chr2_1:78292342-78292361 | None:intergenic | 60.0% | |
| GTGGGTGGCACAACCTCGCT+TGG | + | chr2_1:78292327-78292346 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 78290715 | 78293751 | 78290715 | ID=Msa0227380;Name=Msa0227380 |
| chr2_1 | mRNA | 78290715 | 78293751 | 78290715 | ID=Msa0227380-mRNA-1;Parent=Msa0227380;Name=Msa0227380-mRNA-1;_AED=0.09;_eAED=0.09;_QI=70|0.6|0.66|1|0.6|0.66|6|601|335 |
| chr2_1 | exon | 78290715 | 78291401 | 78290715 | ID=Msa0227380-mRNA-1:exon:23885;Parent=Msa0227380-mRNA-1 |
| chr2_1 | exon | 78291507 | 78291606 | 78291507 | ID=Msa0227380-mRNA-1:exon:23884;Parent=Msa0227380-mRNA-1 |
| chr2_1 | exon | 78291681 | 78291746 | 78291681 | ID=Msa0227380-mRNA-1:exon:23883;Parent=Msa0227380-mRNA-1 |
| chr2_1 | exon | 78292162 | 78292272 | 78292162 | ID=Msa0227380-mRNA-1:exon:23882;Parent=Msa0227380-mRNA-1 |
| chr2_1 | exon | 78292363 | 78292685 | 78292363 | ID=Msa0227380-mRNA-1:exon:23881;Parent=Msa0227380-mRNA-1 |
| chr2_1 | exon | 78293360 | 78293751 | 78293360 | ID=Msa0227380-mRNA-1:exon:23880;Parent=Msa0227380-mRNA-1 |
| chr2_1 | five_prime_UTR | 78293682 | 78293751 | 78293682 | ID=Msa0227380-mRNA-1:five_prime_utr;Parent=Msa0227380-mRNA-1 |
| chr2_1 | CDS | 78293360 | 78293681 | 78293360 | ID=Msa0227380-mRNA-1:cds;Parent=Msa0227380-mRNA-1 |
| chr2_1 | CDS | 78292363 | 78292685 | 78292363 | ID=Msa0227380-mRNA-1:cds;Parent=Msa0227380-mRNA-1 |
| chr2_1 | CDS | 78292162 | 78292272 | 78292162 | ID=Msa0227380-mRNA-1:cds;Parent=Msa0227380-mRNA-1 |
| chr2_1 | CDS | 78291681 | 78291746 | 78291681 | ID=Msa0227380-mRNA-1:cds;Parent=Msa0227380-mRNA-1 |
| chr2_1 | CDS | 78291507 | 78291606 | 78291507 | ID=Msa0227380-mRNA-1:cds;Parent=Msa0227380-mRNA-1 |
| chr2_1 | CDS | 78291316 | 78291401 | 78291316 | ID=Msa0227380-mRNA-1:cds;Parent=Msa0227380-mRNA-1 |
| chr2_1 | three_prime_UTR | 78290715 | 78291315 | 78290715 | ID=Msa0227380-mRNA-1:three_prime_utr;Parent=Msa0227380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
