Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227640 | XP_013465729.1 | 90.000 | 100 | 4 | 2 | 3 | 96 | 121 | 220 | 4.49e-53 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227640 | sp|Q9LKA5|MORF8_ARATH | 74.667 | 75 | 15 | 1 | 3 | 73 | 131 | 205 | 4.90e-33 | 121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227640 | A0A072VNP7 | 90.000 | 100 | 4 | 2 | 3 | 96 | 121 | 220 | 2.14e-53 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0227530 | Msa0227640 | 0.833965 | 3.939245e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227640 | MtrunA17_Chr1g0148081 | 90.000 | 100 | 4 | 2 | 3 | 96 | 121 | 220 | 4.13e-57 | 179 |
| Msa0227640 | MtrunA17_Chr2g0316311 | 90.667 | 75 | 3 | 1 | 3 | 73 | 129 | 203 | 3.54e-43 | 144 |
| Msa0227640 | MtrunA17_Chr4g0067641 | 61.429 | 70 | 22 | 2 | 3 | 68 | 124 | 192 | 5.48e-22 | 86.7 |
| Msa0227640 | MtrunA17_Chr1g0166671 | 43.564 | 101 | 47 | 2 | 3 | 99 | 117 | 211 | 6.84e-18 | 75.1 |
| Msa0227640 | MtrunA17_Chr1g0187251 | 41.584 | 101 | 49 | 2 | 3 | 99 | 135 | 229 | 1.41e-16 | 72.0 |
| Msa0227640 | MtrunA17_Chr2g0316321 | 70.000 | 50 | 11 | 1 | 8 | 53 | 109 | 158 | 2.00e-16 | 70.1 |
| Msa0227640 | MtrunA17_Chr2g0280611 | 39.796 | 98 | 54 | 2 | 4 | 96 | 123 | 220 | 2.09e-15 | 68.9 |
| Msa0227640 | MtrunA17_Chr2g0277431 | 36.190 | 105 | 50 | 3 | 4 | 91 | 161 | 265 | 1.77e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227640 | AT3G15000.1 | 74.667 | 75 | 15 | 1 | 3 | 73 | 131 | 205 | 4.99e-34 | 121 |
| Msa0227640 | AT1G53260.1 | 72.973 | 74 | 16 | 1 | 10 | 79 | 3 | 76 | 7.26e-34 | 118 |
| Msa0227640 | AT1G53260.2 | 72.000 | 75 | 17 | 1 | 10 | 80 | 3 | 77 | 8.21e-34 | 117 |
| Msa0227640 | AT1G72530.1 | 48.235 | 85 | 40 | 1 | 3 | 83 | 88 | 172 | 1.74e-25 | 94.4 |
| Msa0227640 | AT1G72530.2 | 46.067 | 89 | 40 | 2 | 3 | 83 | 88 | 176 | 3.29e-23 | 88.6 |
| Msa0227640 | AT3G06790.2 | 58.462 | 65 | 23 | 1 | 3 | 63 | 128 | 192 | 6.92e-19 | 78.6 |
| Msa0227640 | AT3G06790.1 | 56.923 | 65 | 24 | 1 | 3 | 63 | 128 | 192 | 2.29e-18 | 77.4 |
| Msa0227640 | AT2G35240.1 | 45.361 | 97 | 48 | 2 | 3 | 94 | 131 | 227 | 5.46e-18 | 75.9 |
| Msa0227640 | AT1G32580.1 | 38.614 | 101 | 53 | 2 | 3 | 99 | 128 | 223 | 8.73e-17 | 72.8 |
| Msa0227640 | AT1G11430.1 | 42.391 | 92 | 47 | 2 | 4 | 89 | 123 | 214 | 1.53e-16 | 72.4 |
Find 108 sgRNAs with CRISPR-Local
Find 372 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAATGAATTTGCGTTTC+AGG | 0.114389 | 2_1:-78894028 | Msa0227640:three_prime_UTR |
| ACTAGACACTACTTTGCTTT+TGG | 0.255524 | 2_1:-78895480 | Msa0227640:CDS |
| CCTCCTCCCAACAGTGGATA+TGG | 0.278148 | 2_1:-78894297 | Msa0227640:three_prime_UTR |
| CTAGGCGAGCCCTTCATTAA+TGG | 0.289523 | 2_1:-78894719 | Msa0227640:intron |
| ATTATATACTTTGAGTTTGT+AGG | 0.301804 | 2_1:+78895434 | None:intergenic |
| GGAGCATCCCTGCCATGTTC+TGG | 0.304207 | 2_1:+78894241 | None:intergenic |
| GGAGGAGGTCCGCTCATGTT+GGG | 0.310269 | 2_1:+78894339 | None:intergenic |
| AGGGTATCCCGCAGCATTGT+TGG | 0.342420 | 2_1:+78894488 | None:intergenic |
| TTGGGAGGGTAAGCATTGTT+TGG | 0.344705 | 2_1:+78894507 | None:intergenic |
| ATGATCCAGACAAATTCTTT+TGG | 0.345391 | 2_1:-78894149 | Msa0227640:three_prime_UTR |
| TGCATATCCGCCTTGGTTGT+TGG | 0.345680 | 2_1:+78894440 | None:intergenic |
| GAGGAGGTCCGCTCATGTTG+GGG | 0.358951 | 2_1:+78894340 | None:intergenic |
| TTATTTGACCATCCAGCATT+TGG | 0.362681 | 2_1:+78894220 | None:intergenic |
| AGGCCTCCAGTGCAGAATTC+TGG | 0.365211 | 2_1:-78894537 | Msa0227640:three_prime_UTR |
| GGGGCGTATCCGCCTTGATT+TGG | 0.368787 | 2_1:+78894390 | None:intergenic |
| GGGGCGTATCCGCCTTGATT+TGG | 0.368787 | 2_1:+78894414 | None:intergenic |
| CAGTAGACTCCTGACCTGTT+TGG | 0.380112 | 2_1:-78894196 | Msa0227640:three_prime_UTR |
| GCATATCCGCCTTGGTTGTT+GGG | 0.388442 | 2_1:+78894441 | None:intergenic |
| GGGTATCCCGCAGCATTGTT+GGG | 0.391876 | 2_1:+78894489 | None:intergenic |
| GGGTATCCACCGCCTTGATT+TGG | 0.394832 | 2_1:+78894366 | None:intergenic |
| TCATGATACTTGGGATCATA+TGG | 0.400148 | 2_1:+78894686 | None:intergenic |
| GGAGGAGGTCGGCTCATGTT+AGG | 0.401789 | 2_1:+78894315 | None:intergenic |
| AGGGTATCCACCAGCATTGT+TGG | 0.402771 | 2_1:+78894464 | None:intergenic |
| TAGGCGAGCCCTTCATTAAT+GGG | 0.402836 | 2_1:-78894718 | Msa0227640:CDS |
| TTCACATTCAAATAAGAATC+AGG | 0.404060 | 2_1:+78895299 | None:intergenic |
| GGAGGGTAAGCATTGTTTGG+AGG | 0.406350 | 2_1:+78894510 | None:intergenic |
| ATTGGCCAAAAGAATTTGTC+TGG | 0.406830 | 2_1:+78894144 | None:intergenic |
| AACCCACTCCTCATGATACT+TGG | 0.409695 | 2_1:+78894676 | None:intergenic |
| TGCTCCTCAAAATAACTATC+CGG | 0.416452 | 2_1:-78894274 | Msa0227640:three_prime_UTR |
| AATGTGAAGGAGCAAGATTA+TGG | 0.421958 | 2_1:-78895284 | Msa0227640:CDS |
| ACCTGAAACGCAAATTCATT+AGG | 0.432576 | 2_1:+78894027 | None:intergenic |
| AAAGGAACAGGCGCAATGAT+AGG | 0.434856 | 2_1:-78894631 | Msa0227640:CDS |
| GGGTATCCACCAGCATTGTT+GGG | 0.447108 | 2_1:+78894465 | None:intergenic |
| GCGTATCCGCCTTGATTTGG+AGG | 0.451222 | 2_1:+78894393 | None:intergenic |
| CGCAAATTCATTAGGAAGAA+GGG | 0.463797 | 2_1:+78894035 | None:intergenic |
| CTCGTGCTAATGAAAGGAAC+AGG | 0.465708 | 2_1:-78894643 | Msa0227640:CDS |
| GCGTATCCGCCTTGATTTGG+AGG | 0.469236 | 2_1:+78894417 | None:intergenic |
| TATCCACCGCCTTGATTTGG+AGG | 0.469888 | 2_1:+78894369 | None:intergenic |
| AAGCAGTGTCTCTTCCAAAC+AGG | 0.473380 | 2_1:+78894182 | None:intergenic |
| AGGAGGAGGTCCGCTCATGT+TGG | 0.477573 | 2_1:+78894338 | None:intergenic |
| GGCAGGGATGCTCCAAATGC+TGG | 0.478435 | 2_1:-78894232 | Msa0227640:three_prime_UTR |
| GGGTAAGCATTGTTTGGAGG+TGG | 0.485288 | 2_1:+78894513 | None:intergenic |
| CAACAAAACCAGAACATGGC+AGG | 0.486858 | 2_1:-78894249 | Msa0227640:three_prime_UTR |
| ACGCAAATTCATTAGGAAGA+AGG | 0.487709 | 2_1:+78894034 | None:intergenic |
| AACTGCTTGCCCATTAATGA+AGG | 0.499721 | 2_1:+78894709 | None:intergenic |
| CAGAACTGCCCAAGGTTCGA+TGG | 0.506009 | 2_1:-78895328 | Msa0227640:intron |
| GCTCCTCAAAATAACTATCC+GGG | 0.508204 | 2_1:-78894273 | Msa0227640:three_prime_UTR |
| ATCCGCCTTGGTTGTTGGGA+GGG | 0.510147 | 2_1:+78894445 | None:intergenic |
| ATCCACCGCCTTGATTTGGA+GGG | 0.518306 | 2_1:+78894370 | None:intergenic |
| GTGTCTCTTCCAAACAGGTC+AGG | 0.518983 | 2_1:+78894187 | None:intergenic |
| GGAGGTCCGCTCATGTTGGG+GGG | 0.523071 | 2_1:+78894342 | None:intergenic |
| TACCCTCCCAACAATGCTGC+GGG | 0.525044 | 2_1:-78894495 | Msa0227640:three_prime_UTR |
| AGGAGCACCATATCCACTGT+TGG | 0.526278 | 2_1:+78894290 | None:intergenic |
| GCCCCTCCAAATCAAGGCGG+TGG | 0.530754 | 2_1:-78894372 | Msa0227640:three_prime_UTR |
| ATCTATAAAATCTCATTACA+TGG | 0.534196 | 2_1:+78894072 | None:intergenic |
| GGATACCCTCCCAACAATGC+TGG | 0.535372 | 2_1:-78894474 | Msa0227640:three_prime_UTR |
| TTGGAGGTGCATATCCGCCT+TGG | 0.535415 | 2_1:+78894433 | None:intergenic |
| GGAGCACCATATCCACTGTT+GGG | 0.536295 | 2_1:+78894291 | None:intergenic |
| ACCCACTCCTCATGATACTT+GGG | 0.538686 | 2_1:+78894677 | None:intergenic |
| GGATACGCCCCTCCAAATCA+AGG | 0.539244 | 2_1:-78894378 | Msa0227640:three_prime_UTR |
| GGATACGCCCCTCCAAATCA+AGG | 0.539244 | 2_1:-78894402 | Msa0227640:three_prime_UTR |
| GGATATGCACCTCCAAATCA+AGG | 0.542378 | 2_1:-78894426 | Msa0227640:three_prime_UTR |
| TATCCGCCTTGGTTGTTGGG+AGG | 0.545068 | 2_1:+78894444 | None:intergenic |
| GAGGCCTACTTTGCATGTCT+CGG | 0.545839 | 2_1:+78894553 | None:intergenic |
| ATTCATTACTATATCTACAT+TGG | 0.546046 | 2_1:+78894126 | None:intergenic |
| AGGAGGTCCGCTCATGTTGG+GGG | 0.547032 | 2_1:+78894341 | None:intergenic |
| CGTATCCGCCTTGATTTGGA+GGG | 0.547247 | 2_1:+78894394 | None:intergenic |
| TGATTCTTATTTGAATGTGA+AGG | 0.548912 | 2_1:-78895297 | Msa0227640:CDS |
| TATCCACTGTTGGGAGGAGG+AGG | 0.551690 | 2_1:+78894300 | None:intergenic |
| ACATAATATAAATCATGTCT+CGG | 0.553942 | 2_1:+78894098 | None:intergenic |
| GGAGGTCGGCTCATGTTAGG+AGG | 0.555007 | 2_1:+78894318 | None:intergenic |
| TTTACAGTGAAGAAGAAGCT+AGG | 0.556151 | 2_1:-78895524 | Msa0227640:intron |
| ATCCACCAGCATTGTTGGGA+GGG | 0.556921 | 2_1:+78894469 | None:intergenic |
| CCATATCCACTGTTGGGAGG+AGG | 0.564256 | 2_1:+78894297 | None:intergenic |
| AGAACTGCCCAAGGTTCGAT+GGG | 0.567973 | 2_1:-78895327 | Msa0227640:intron |
| ACAATGCTCGTGCTAATGAA+AGG | 0.568451 | 2_1:-78894649 | Msa0227640:CDS |
| CGGCTCATGTTAGGAGGAGG+AGG | 0.570215 | 2_1:+78894324 | None:intergenic |
| ATCCCGCAGCATTGTTGGGA+GGG | 0.574116 | 2_1:+78894493 | None:intergenic |
| TGAAAGGAGAAGGGAAAATG+TGG | 0.578997 | 2_1:-78894580 | Msa0227640:CDS |
| TCCACCGCCTTGATTTGGAG+GGG | 0.583520 | 2_1:+78894371 | None:intergenic |
| TACCCTCCCAACAATGCTGG+TGG | 0.587922 | 2_1:-78894471 | Msa0227640:three_prime_UTR |
| GGTGGACCAGAATTCTGCAC+TGG | 0.588014 | 2_1:+78894531 | None:intergenic |
| ATCCCAAGTATCATGAGGAG+TGG | 0.594093 | 2_1:-78894679 | Msa0227640:CDS |
| CACTGTTGGGAGGAGGAGGT+CGG | 0.595244 | 2_1:+78894304 | None:intergenic |
| ATAGGCCTCGTAATAACGAC+AGG | 0.597786 | 2_1:-78894613 | Msa0227640:CDS |
| GGTCGGCTCATGTTAGGAGG+AGG | 0.598819 | 2_1:+78894321 | None:intergenic |
| CTTGACCTGTCGTTATTACG+AGG | 0.600460 | 2_1:+78894608 | None:intergenic |
| TGAACCGAGACATGCAAAGT+AGG | 0.601888 | 2_1:-78894557 | Msa0227640:three_prime_UTR |
| GGACCAGAATTCTGCACTGG+AGG | 0.603026 | 2_1:+78894534 | None:intergenic |
| TCCCAAGTATCATGAGGAGT+GGG | 0.609416 | 2_1:-78894678 | Msa0227640:CDS |
| CTCCTCAAAATAACTATCCG+GGG | 0.615375 | 2_1:-78894272 | Msa0227640:three_prime_UTR |
| TATCCACCAGCATTGTTGGG+AGG | 0.617145 | 2_1:+78894468 | None:intergenic |
| GTATCCGCCTTGATTTGGAG+GGG | 0.625704 | 2_1:+78894395 | None:intergenic |
| TATCCCGCAGCATTGTTGGG+AGG | 0.627821 | 2_1:+78894492 | None:intergenic |
| AACAAAACCAGAACATGGCA+GGG | 0.630196 | 2_1:-78894248 | Msa0227640:three_prime_UTR |
| GGGATGCTCCAAATGCTGGA+TGG | 0.630576 | 2_1:-78894228 | Msa0227640:three_prime_UTR |
| ACTGCTTGCCCATTAATGAA+GGG | 0.632956 | 2_1:+78894710 | None:intergenic |
| GTGAAGGAGCAAGATTATGG+AGG | 0.633136 | 2_1:-78895281 | Msa0227640:intron |
| TTACCCTCCCAACAATGCTG+CGG | 0.636542 | 2_1:-78894496 | Msa0227640:three_prime_UTR |
| GCACCATATCCACTGTTGGG+AGG | 0.668110 | 2_1:+78894294 | None:intergenic |
| ATATGATCCCAAGTATCATG+AGG | 0.674281 | 2_1:-78894684 | Msa0227640:CDS |
| CGACCTCCTCCTCCCAACAG+TGG | 0.676748 | 2_1:-78894303 | Msa0227640:three_prime_UTR |
| GGATACCCTCCCAACAACCA+AGG | 0.680141 | 2_1:-78894450 | Msa0227640:three_prime_UTR |
| GGGGCAACAAAACCAGAACA+TGG | 0.684830 | 2_1:-78894253 | Msa0227640:three_prime_UTR |
| TACCCTCCCAACAACCAAGG+CGG | 0.715418 | 2_1:-78894447 | Msa0227640:three_prime_UTR |
| TACGCCCCTCCAAATCAAGG+CGG | 0.767202 | 2_1:-78894375 | Msa0227640:three_prime_UTR |
| TACGCCCCTCCAAATCAAGG+CGG | 0.768249 | 2_1:-78894399 | Msa0227640:three_prime_UTR |
| TATGCACCTCCAAATCAAGG+CGG | 0.782403 | 2_1:-78894423 | Msa0227640:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAGTAATAGATATA+GGG | + | chr2_1:78894504-78894523 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGTAATAGATAT+AGG | + | chr2_1:78894505-78894524 | None:intergenic | 10.0% |
| !! | AAAAAAAAGTAATAGATATA+GGG | + | chr2_1:78894504-78894523 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGTAATAGATAT+AGG | + | chr2_1:78894505-78894524 | None:intergenic | 10.0% |
| !! | TATAAGAAATTATGGAAAAT+AGG | - | chr2_1:78893932-78893951 | Msa0227640:three_prime_UTR | 15.0% |
| !!! | CTTTTATTATACTTAATTGT+AGG | + | chr2_1:78895028-78895047 | None:intergenic | 15.0% |
| !!! | TCTAAATAGCATTTTTTAAA+TGG | + | chr2_1:78895065-78895084 | None:intergenic | 15.0% |
| !! | TATAAGAAATTATGGAAAAT+AGG | - | chr2_1:78893932-78893951 | Msa0227640:three_prime_UTR | 15.0% |
| !!! | CTTTTATTATACTTAATTGT+AGG | + | chr2_1:78895028-78895047 | None:intergenic | 15.0% |
| !!! | TCTAAATAGCATTTTTTAAA+TGG | + | chr2_1:78895065-78895084 | None:intergenic | 15.0% |
| !! | TTGTGCATTATAAGAAATTA+TGG | - | chr2_1:78893924-78893943 | Msa0227640:three_prime_UTR | 20.0% |
| !! | ACAAGTTCTCAAATATATTA+TGG | + | chr2_1:78893959-78893978 | None:intergenic | 20.0% |
| !! | AGATTATAAACAAAGTGATT+TGG | - | chr2_1:78894191-78894210 | Msa0227640:three_prime_UTR | 20.0% |
| !! | TATAGAAATAGCTTATACAT+AGG | + | chr2_1:78894306-78894325 | None:intergenic | 20.0% |
| !!! | TACTCTGATTTTTATTTATG+TGG | - | chr2_1:78894608-78894627 | Msa0227640:CDS | 20.0% |
| !!! | ATTATATACTTTGAGTTTGT+AGG | + | chr2_1:78894737-78894756 | None:intergenic | 20.0% |
| !! | AACTCAAAGTATATAATACA+TGG | - | chr2_1:78894740-78894759 | Msa0227640:intron | 20.0% |
| !! | GACATAATGAATATAATTAG+AGG | + | chr2_1:78894938-78894957 | None:intergenic | 20.0% |
| !! | ATTCATTACTATATCTACAT+TGG | + | chr2_1:78896045-78896064 | None:intergenic | 20.0% |
| !! | ACATAATATAAATCATGTCT+CGG | + | chr2_1:78896073-78896092 | None:intergenic | 20.0% |
| !! | ATCTATAAAATCTCATTACA+TGG | + | chr2_1:78896099-78896118 | None:intergenic | 20.0% |
| !! | TTGTGCATTATAAGAAATTA+TGG | - | chr2_1:78893924-78893943 | Msa0227640:three_prime_UTR | 20.0% |
| !! | ACAAGTTCTCAAATATATTA+TGG | + | chr2_1:78893959-78893978 | None:intergenic | 20.0% |
| !! | AGATTATAAACAAAGTGATT+TGG | - | chr2_1:78894191-78894210 | Msa0227640:three_prime_UTR | 20.0% |
| !! | TATAGAAATAGCTTATACAT+AGG | + | chr2_1:78894306-78894325 | None:intergenic | 20.0% |
| !!! | TACTCTGATTTTTATTTATG+TGG | - | chr2_1:78894608-78894627 | Msa0227640:CDS | 20.0% |
| !!! | ATTATATACTTTGAGTTTGT+AGG | + | chr2_1:78894737-78894756 | None:intergenic | 20.0% |
| !! | AACTCAAAGTATATAATACA+TGG | - | chr2_1:78894740-78894759 | Msa0227640:intron | 20.0% |
| !! | GACATAATGAATATAATTAG+AGG | + | chr2_1:78894938-78894957 | None:intergenic | 20.0% |
| !! | ATTCATTACTATATCTACAT+TGG | + | chr2_1:78896045-78896064 | None:intergenic | 20.0% |
| !! | ACATAATATAAATCATGTCT+CGG | + | chr2_1:78896073-78896092 | None:intergenic | 20.0% |
| !! | ATCTATAAAATCTCATTACA+TGG | + | chr2_1:78896099-78896118 | None:intergenic | 20.0% |
| ! | GCATTATGAGAATTTGAATA+TGG | - | chr2_1:78893995-78894014 | Msa0227640:three_prime_UTR | 25.0% |
| ! | AGAATACTATTATGTGAGAA+TGG | - | chr2_1:78894146-78894165 | Msa0227640:three_prime_UTR | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | - | chr2_1:78894408-78894427 | Msa0227640:three_prime_UTR | 25.0% |
| !!! | ATTGAGAATATTGATTCTGA+AGG | - | chr2_1:78894552-78894571 | Msa0227640:three_prime_UTR | 25.0% |
| !! | TTTGAATGAATGGTTTCTTT+TGG | - | chr2_1:78894580-78894599 | Msa0227640:CDS | 25.0% |
| !!! | CTGATTTTTATTTATGTGGT+TGG | - | chr2_1:78894612-78894631 | Msa0227640:CDS | 25.0% |
| ! | TTCACATTCAAATAAGAATC+AGG | + | chr2_1:78894872-78894891 | None:intergenic | 25.0% |
| !! | TGATTCTTATTTGAATGTGA+AGG | - | chr2_1:78894871-78894890 | Msa0227640:intron | 25.0% |
| ! | CATTCCTTATATATATACAC+AGG | + | chr2_1:78894991-78895010 | None:intergenic | 25.0% |
| ! | AAAACATCAGTATACTACAA+AGG | + | chr2_1:78895175-78895194 | None:intergenic | 25.0% |
| ! | CTATGAATTATAGCATTAGT+AGG | - | chr2_1:78895319-78895338 | Msa0227640:intron | 25.0% |
| ! | TCATATTTCTTGATGTAGAA+TGG | - | chr2_1:78895376-78895395 | Msa0227640:intron | 25.0% |
| ! | ACACATCAAACAACAAATAT+TGG | + | chr2_1:78895402-78895421 | None:intergenic | 25.0% |
| !! | GATTTTATAGATCTTATGTC+TGG | - | chr2_1:78896107-78896126 | Msa0227640:intron | 25.0% |
| ! | GCATTATGAGAATTTGAATA+TGG | - | chr2_1:78893995-78894014 | Msa0227640:three_prime_UTR | 25.0% |
| ! | AGAATACTATTATGTGAGAA+TGG | - | chr2_1:78894146-78894165 | Msa0227640:three_prime_UTR | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | - | chr2_1:78894408-78894427 | Msa0227640:three_prime_UTR | 25.0% |
| !!! | ATTGAGAATATTGATTCTGA+AGG | - | chr2_1:78894552-78894571 | Msa0227640:three_prime_UTR | 25.0% |
| !! | TTTGAATGAATGGTTTCTTT+TGG | - | chr2_1:78894580-78894599 | Msa0227640:CDS | 25.0% |
| !!! | CTGATTTTTATTTATGTGGT+TGG | - | chr2_1:78894612-78894631 | Msa0227640:CDS | 25.0% |
| ! | TTCACATTCAAATAAGAATC+AGG | + | chr2_1:78894872-78894891 | None:intergenic | 25.0% |
| !! | TGATTCTTATTTGAATGTGA+AGG | - | chr2_1:78894871-78894890 | Msa0227640:intron | 25.0% |
| ! | CATTCCTTATATATATACAC+AGG | + | chr2_1:78894991-78895010 | None:intergenic | 25.0% |
| ! | AAAACATCAGTATACTACAA+AGG | + | chr2_1:78895175-78895194 | None:intergenic | 25.0% |
| ! | CTATGAATTATAGCATTAGT+AGG | - | chr2_1:78895319-78895338 | Msa0227640:intron | 25.0% |
| ! | TCATATTTCTTGATGTAGAA+TGG | - | chr2_1:78895376-78895395 | Msa0227640:intron | 25.0% |
| ! | ACACATCAAACAACAAATAT+TGG | + | chr2_1:78895402-78895421 | None:intergenic | 25.0% |
| !! | GATTTTATAGATCTTATGTC+TGG | - | chr2_1:78896107-78896126 | Msa0227640:intron | 25.0% |
| ATTCTGTGAGAATGAATGTT+TGG | - | chr2_1:78894114-78894133 | Msa0227640:three_prime_UTR | 30.0% | |
| !!! | GTTTGGATAAGCATCTTTTT+TGG | - | chr2_1:78894218-78894237 | Msa0227640:three_prime_UTR | 30.0% |
| !! | AAAGTTTTGTGAGACTGTTT+GGG | + | chr2_1:78894467-78894486 | None:intergenic | 30.0% |
| !! | AAAAGTTTTGTGAGACTGTT+TGG | + | chr2_1:78894468-78894487 | None:intergenic | 30.0% |
| ! | CAAAACTTTTGTCAGTAGTT+AGG | - | chr2_1:78894478-78894497 | Msa0227640:three_prime_UTR | 30.0% |
| AATGAATATAATTAGAGGCC+AGG | + | chr2_1:78894933-78894952 | None:intergenic | 30.0% | |
| GTCTCCTGTGTATATATATA+AGG | - | chr2_1:78894984-78895003 | Msa0227640:intron | 30.0% | |
| TAACCTTTGTGGTATACTAA+GGG | - | chr2_1:78895196-78895215 | Msa0227640:intron | 30.0% | |
| GTATAGTAACAGATGACAAT+TGG | + | chr2_1:78895251-78895270 | None:intergenic | 30.0% | |
| TGTCATCTGTTACTATACTT+TGG | - | chr2_1:78895253-78895272 | Msa0227640:intron | 30.0% | |
| TGAATTATAGCATTAGTAGG+TGG | - | chr2_1:78895322-78895341 | Msa0227640:intron | 30.0% | |
| GAATTATAGCATTAGTAGGT+GGG | - | chr2_1:78895323-78895342 | Msa0227640:intron | 30.0% | |
| AATTATAGCATTAGTAGGTG+GGG | - | chr2_1:78895324-78895343 | Msa0227640:intron | 30.0% | |
| !! | TCAAGAATTTTGAAAGGAGA+AGG | - | chr2_1:78895578-78895597 | Msa0227640:intron | 30.0% |
| !! | CAAGAATTTTGAAAGGAGAA+GGG | - | chr2_1:78895579-78895598 | Msa0227640:intron | 30.0% |
| ! | ATGATCCAGACAAATTCTTT+TGG | - | chr2_1:78896019-78896038 | Msa0227640:intron | 30.0% |
| ATTCTGTGAGAATGAATGTT+TGG | - | chr2_1:78894114-78894133 | Msa0227640:three_prime_UTR | 30.0% | |
| !!! | GTTTGGATAAGCATCTTTTT+TGG | - | chr2_1:78894218-78894237 | Msa0227640:three_prime_UTR | 30.0% |
| !! | AAAGTTTTGTGAGACTGTTT+GGG | + | chr2_1:78894467-78894486 | None:intergenic | 30.0% |
| !! | AAAAGTTTTGTGAGACTGTT+TGG | + | chr2_1:78894468-78894487 | None:intergenic | 30.0% |
| ! | CAAAACTTTTGTCAGTAGTT+AGG | - | chr2_1:78894478-78894497 | Msa0227640:three_prime_UTR | 30.0% |
| AATGAATATAATTAGAGGCC+AGG | + | chr2_1:78894933-78894952 | None:intergenic | 30.0% | |
| GTCTCCTGTGTATATATATA+AGG | - | chr2_1:78894984-78895003 | Msa0227640:intron | 30.0% | |
| TAACCTTTGTGGTATACTAA+GGG | - | chr2_1:78895196-78895215 | Msa0227640:intron | 30.0% | |
| GTATAGTAACAGATGACAAT+TGG | + | chr2_1:78895251-78895270 | None:intergenic | 30.0% | |
| TGTCATCTGTTACTATACTT+TGG | - | chr2_1:78895253-78895272 | Msa0227640:intron | 30.0% | |
| TGAATTATAGCATTAGTAGG+TGG | - | chr2_1:78895322-78895341 | Msa0227640:intron | 30.0% | |
| GAATTATAGCATTAGTAGGT+GGG | - | chr2_1:78895323-78895342 | Msa0227640:intron | 30.0% | |
| AATTATAGCATTAGTAGGTG+GGG | - | chr2_1:78895324-78895343 | Msa0227640:intron | 30.0% | |
| !! | TCAAGAATTTTGAAAGGAGA+AGG | - | chr2_1:78895578-78895597 | Msa0227640:intron | 30.0% |
| !! | CAAGAATTTTGAAAGGAGAA+GGG | - | chr2_1:78895579-78895598 | Msa0227640:intron | 30.0% |
| ! | ATGATCCAGACAAATTCTTT+TGG | - | chr2_1:78896019-78896038 | Msa0227640:intron | 30.0% |
| TAATGCACAACAAACAGAAC+AGG | + | chr2_1:78893914-78893933 | None:intergenic | 35.0% | |
| !!! | GCATCTTTTTTGGATCTGTT+TGG | - | chr2_1:78894228-78894247 | Msa0227640:three_prime_UTR | 35.0% |
| TTTACAGCTTATAGCACAAG+TGG | - | chr2_1:78894263-78894282 | Msa0227640:three_prime_UTR | 35.0% | |
| TTTACAGTGAAGAAGAAGCT+AGG | - | chr2_1:78894644-78894663 | Msa0227640:CDS | 35.0% | |
| ! | ACTAGACACTACTTTGCTTT+TGG | - | chr2_1:78894688-78894707 | Msa0227640:CDS | 35.0% |
| AATGTGAAGGAGCAAGATTA+TGG | - | chr2_1:78894884-78894903 | Msa0227640:intron | 35.0% | |
| !! | TTGAAGTGTTGCTTATACAG+AGG | - | chr2_1:78895127-78895146 | Msa0227640:intron | 35.0% |
| !! | TGAAGTGTTGCTTATACAGA+GGG | - | chr2_1:78895128-78895147 | Msa0227640:intron | 35.0% |
| ! | CTGATGTTTTGTAACCTTTG+TGG | - | chr2_1:78895185-78895204 | Msa0227640:intron | 35.0% |
| GTAACCTTTGTGGTATACTA+AGG | - | chr2_1:78895195-78895214 | Msa0227640:intron | 35.0% | |
| ! | ATTGGTAAAATGACTAGCCA+CGG | + | chr2_1:78895233-78895252 | None:intergenic | 35.0% |
| ATTATAGCATTAGTAGGTGG+GGG | - | chr2_1:78895325-78895344 | Msa0227640:intron | 35.0% | |
| !!! | TTTTTTTGTTCCCTCTCACT+AGG | - | chr2_1:78895431-78895450 | Msa0227640:intron | 35.0% |
| TCATGATACTTGGGATCATA+TGG | + | chr2_1:78895485-78895504 | None:intergenic | 35.0% | |
| ATATGATCCCAAGTATCATG+AGG | - | chr2_1:78895484-78895503 | Msa0227640:CDS | 35.0% | |
| ! | GACAGGTCAAGAATTTTGAA+AGG | - | chr2_1:78895572-78895591 | Msa0227640:intron | 35.0% |
| TGCTCCTCAAAATAACTATC+CGG | - | chr2_1:78895894-78895913 | Msa0227640:intron | 35.0% | |
| TTATTTGACCATCCAGCATT+TGG | + | chr2_1:78895951-78895970 | None:intergenic | 35.0% | |
| ATTGGCCAAAAGAATTTGTC+TGG | + | chr2_1:78896027-78896046 | None:intergenic | 35.0% | |
| CGCAAATTCATTAGGAAGAA+GGG | + | chr2_1:78896136-78896155 | None:intergenic | 35.0% | |
| ACGCAAATTCATTAGGAAGA+AGG | + | chr2_1:78896137-78896156 | None:intergenic | 35.0% | |
| TCCTAATGAATTTGCGTTTC+AGG | - | chr2_1:78896140-78896159 | Msa0227640:intron | 35.0% | |
| ACCTGAAACGCAAATTCATT+AGG | + | chr2_1:78896144-78896163 | None:intergenic | 35.0% | |
| TAATGCACAACAAACAGAAC+AGG | + | chr2_1:78893914-78893933 | None:intergenic | 35.0% | |
| !!! | GCATCTTTTTTGGATCTGTT+TGG | - | chr2_1:78894228-78894247 | Msa0227640:three_prime_UTR | 35.0% |
| TTTACAGCTTATAGCACAAG+TGG | - | chr2_1:78894263-78894282 | Msa0227640:three_prime_UTR | 35.0% | |
| TTTACAGTGAAGAAGAAGCT+AGG | - | chr2_1:78894644-78894663 | Msa0227640:CDS | 35.0% | |
| ! | ACTAGACACTACTTTGCTTT+TGG | - | chr2_1:78894688-78894707 | Msa0227640:CDS | 35.0% |
| AATGTGAAGGAGCAAGATTA+TGG | - | chr2_1:78894884-78894903 | Msa0227640:intron | 35.0% | |
| !! | TTGAAGTGTTGCTTATACAG+AGG | - | chr2_1:78895127-78895146 | Msa0227640:intron | 35.0% |
| !! | TGAAGTGTTGCTTATACAGA+GGG | - | chr2_1:78895128-78895147 | Msa0227640:intron | 35.0% |
| ! | CTGATGTTTTGTAACCTTTG+TGG | - | chr2_1:78895185-78895204 | Msa0227640:intron | 35.0% |
| GTAACCTTTGTGGTATACTA+AGG | - | chr2_1:78895195-78895214 | Msa0227640:intron | 35.0% | |
| ! | ATTGGTAAAATGACTAGCCA+CGG | + | chr2_1:78895233-78895252 | None:intergenic | 35.0% |
| ATTATAGCATTAGTAGGTGG+GGG | - | chr2_1:78895325-78895344 | Msa0227640:intron | 35.0% | |
| !!! | TTTTTTTGTTCCCTCTCACT+AGG | - | chr2_1:78895431-78895450 | Msa0227640:intron | 35.0% |
| TCATGATACTTGGGATCATA+TGG | + | chr2_1:78895485-78895504 | None:intergenic | 35.0% | |
| ATATGATCCCAAGTATCATG+AGG | - | chr2_1:78895484-78895503 | Msa0227640:CDS | 35.0% | |
| ! | GACAGGTCAAGAATTTTGAA+AGG | - | chr2_1:78895572-78895591 | Msa0227640:intron | 35.0% |
| TGCTCCTCAAAATAACTATC+CGG | - | chr2_1:78895894-78895913 | Msa0227640:intron | 35.0% | |
| TTATTTGACCATCCAGCATT+TGG | + | chr2_1:78895951-78895970 | None:intergenic | 35.0% | |
| ATTGGCCAAAAGAATTTGTC+TGG | + | chr2_1:78896027-78896046 | None:intergenic | 35.0% | |
| CGCAAATTCATTAGGAAGAA+GGG | + | chr2_1:78896136-78896155 | None:intergenic | 35.0% | |
| ACGCAAATTCATTAGGAAGA+AGG | + | chr2_1:78896137-78896156 | None:intergenic | 35.0% | |
| TCCTAATGAATTTGCGTTTC+AGG | - | chr2_1:78896140-78896159 | Msa0227640:intron | 35.0% | |
| ACCTGAAACGCAAATTCATT+AGG | + | chr2_1:78896144-78896163 | None:intergenic | 35.0% | |
| !! | CAAAGTGATTTGGCTCTGTT+TGG | - | chr2_1:78894201-78894220 | Msa0227640:three_prime_UTR | 40.0% |
| GCTGTTGTCATAAGCTATCT+TGG | - | chr2_1:78894374-78894393 | Msa0227640:three_prime_UTR | 40.0% | |
| GAAGGCTGTGTTTGAATGAA+TGG | - | chr2_1:78894570-78894589 | Msa0227640:exon | 40.0% | |
| AATACCCACAGCAAAGTCTT+GGG | + | chr2_1:78895090-78895109 | None:intergenic | 40.0% | |
| !! | GAAGTGTTGCTTATACAGAG+GGG | - | chr2_1:78895129-78895148 | Msa0227640:intron | 40.0% |
| !! | AAGTGTTGCTTATACAGAGG+GGG | - | chr2_1:78895130-78895149 | Msa0227640:intron | 40.0% |
| CAACCCTTAGTATACCACAA+AGG | + | chr2_1:78895202-78895221 | None:intergenic | 40.0% | |
| ! | TTGGTAAAATGACTAGCCAC+GGG | + | chr2_1:78895232-78895251 | None:intergenic | 40.0% |
| ACTGCTTGCCCATTAATGAA+GGG | + | chr2_1:78895461-78895480 | None:intergenic | 40.0% | |
| AACTGCTTGCCCATTAATGA+AGG | + | chr2_1:78895462-78895481 | None:intergenic | 40.0% | |
| ACAATGCTCGTGCTAATGAA+AGG | - | chr2_1:78895519-78895538 | Msa0227640:CDS | 40.0% | |
| TGAAAGGAGAAGGGAAAATG+TGG | - | chr2_1:78895588-78895607 | Msa0227640:intron | 40.0% | |
| GCTCCTCAAAATAACTATCC+GGG | - | chr2_1:78895895-78895914 | Msa0227640:intron | 40.0% | |
| CTCCTCAAAATAACTATCCG+GGG | - | chr2_1:78895896-78895915 | Msa0227640:intron | 40.0% | |
| AACAAAACCAGAACATGGCA+GGG | - | chr2_1:78895920-78895939 | Msa0227640:intron | 40.0% | |
| !! | CAAAGTGATTTGGCTCTGTT+TGG | - | chr2_1:78894201-78894220 | Msa0227640:three_prime_UTR | 40.0% |
| GCTGTTGTCATAAGCTATCT+TGG | - | chr2_1:78894374-78894393 | Msa0227640:three_prime_UTR | 40.0% | |
| GAAGGCTGTGTTTGAATGAA+TGG | - | chr2_1:78894570-78894589 | Msa0227640:exon | 40.0% | |
| AATACCCACAGCAAAGTCTT+GGG | + | chr2_1:78895090-78895109 | None:intergenic | 40.0% | |
| !! | GAAGTGTTGCTTATACAGAG+GGG | - | chr2_1:78895129-78895148 | Msa0227640:intron | 40.0% |
| !! | AAGTGTTGCTTATACAGAGG+GGG | - | chr2_1:78895130-78895149 | Msa0227640:intron | 40.0% |
| CAACCCTTAGTATACCACAA+AGG | + | chr2_1:78895202-78895221 | None:intergenic | 40.0% | |
| ! | TTGGTAAAATGACTAGCCAC+GGG | + | chr2_1:78895232-78895251 | None:intergenic | 40.0% |
| ACTGCTTGCCCATTAATGAA+GGG | + | chr2_1:78895461-78895480 | None:intergenic | 40.0% | |
| AACTGCTTGCCCATTAATGA+AGG | + | chr2_1:78895462-78895481 | None:intergenic | 40.0% | |
| ACAATGCTCGTGCTAATGAA+AGG | - | chr2_1:78895519-78895538 | Msa0227640:CDS | 40.0% | |
| TGAAAGGAGAAGGGAAAATG+TGG | - | chr2_1:78895588-78895607 | Msa0227640:intron | 40.0% | |
| GCTCCTCAAAATAACTATCC+GGG | - | chr2_1:78895895-78895914 | Msa0227640:intron | 40.0% | |
| CTCCTCAAAATAACTATCCG+GGG | - | chr2_1:78895896-78895915 | Msa0227640:intron | 40.0% | |
| AACAAAACCAGAACATGGCA+GGG | - | chr2_1:78895920-78895939 | Msa0227640:intron | 40.0% | |
| GTGAAGGAGCAAGATTATGG+AGG | - | chr2_1:78894887-78894906 | Msa0227640:intron | 45.0% | |
| ATAATTAGAGGCCAGGTGAC+AGG | + | chr2_1:78894926-78894945 | None:intergenic | 45.0% | |
| AGATACCCAAGACTTTGCTG+TGG | - | chr2_1:78895082-78895101 | Msa0227640:intron | 45.0% | |
| ! | GATACCCAAGACTTTGCTGT+GGG | - | chr2_1:78895083-78895102 | Msa0227640:intron | 45.0% |
| GAATACCCACAGCAAAGTCT+TGG | + | chr2_1:78895091-78895110 | None:intergenic | 45.0% | |
| !! | AGTGTTGCTTATACAGAGGG+GGG | - | chr2_1:78895131-78895150 | Msa0227640:intron | 45.0% |
| TAGGCGAGCCCTTCATTAAT+GGG | - | chr2_1:78895450-78895469 | Msa0227640:CDS | 45.0% | |
| ATCCCAAGTATCATGAGGAG+TGG | - | chr2_1:78895489-78895508 | Msa0227640:CDS | 45.0% | |
| TCCCAAGTATCATGAGGAGT+GGG | - | chr2_1:78895490-78895509 | Msa0227640:CDS | 45.0% | |
| ACCCACTCCTCATGATACTT+GGG | + | chr2_1:78895494-78895513 | None:intergenic | 45.0% | |
| AACCCACTCCTCATGATACT+TGG | + | chr2_1:78895495-78895514 | None:intergenic | 45.0% | |
| CTCGTGCTAATGAAAGGAAC+AGG | - | chr2_1:78895525-78895544 | Msa0227640:intron | 45.0% | |
| AAAGGAACAGGCGCAATGAT+AGG | - | chr2_1:78895537-78895556 | Msa0227640:intron | 45.0% | |
| ATAGGCCTCGTAATAACGAC+AGG | - | chr2_1:78895555-78895574 | Msa0227640:intron | 45.0% | |
| CTTGACCTGTCGTTATTACG+AGG | + | chr2_1:78895563-78895582 | None:intergenic | 45.0% | |
| TGAACCGAGACATGCAAAGT+AGG | - | chr2_1:78895611-78895630 | Msa0227640:intron | 45.0% | |
| ! | TTGGGAGGGTAAGCATTGTT+TGG | + | chr2_1:78895664-78895683 | None:intergenic | 45.0% |
| GGATATGCACCTCCAAATCA+AGG | - | chr2_1:78895742-78895761 | Msa0227640:intron | 45.0% | |
| TATGCACCTCCAAATCAAGG+CGG | - | chr2_1:78895745-78895764 | Msa0227640:intron | 45.0% | |
| !! | TGCCCCGGATAGTTATTTTG+AGG | + | chr2_1:78895901-78895920 | None:intergenic | 45.0% |
| !!! | ATGTTCTGGTTTTGTTGCCC+CGG | + | chr2_1:78895916-78895935 | None:intergenic | 45.0% |
| CAACAAAACCAGAACATGGC+AGG | - | chr2_1:78895919-78895938 | Msa0227640:intron | 45.0% | |
| AAGCAGTGTCTCTTCCAAAC+AGG | + | chr2_1:78895989-78896008 | None:intergenic | 45.0% | |
| GTGAAGGAGCAAGATTATGG+AGG | - | chr2_1:78894887-78894906 | Msa0227640:intron | 45.0% | |
| ATAATTAGAGGCCAGGTGAC+AGG | + | chr2_1:78894926-78894945 | None:intergenic | 45.0% | |
| AGATACCCAAGACTTTGCTG+TGG | - | chr2_1:78895082-78895101 | Msa0227640:intron | 45.0% | |
| ! | GATACCCAAGACTTTGCTGT+GGG | - | chr2_1:78895083-78895102 | Msa0227640:intron | 45.0% |
| GAATACCCACAGCAAAGTCT+TGG | + | chr2_1:78895091-78895110 | None:intergenic | 45.0% | |
| !! | AGTGTTGCTTATACAGAGGG+GGG | - | chr2_1:78895131-78895150 | Msa0227640:intron | 45.0% |
| TAGGCGAGCCCTTCATTAAT+GGG | - | chr2_1:78895450-78895469 | Msa0227640:CDS | 45.0% | |
| ATCCCAAGTATCATGAGGAG+TGG | - | chr2_1:78895489-78895508 | Msa0227640:CDS | 45.0% | |
| TCCCAAGTATCATGAGGAGT+GGG | - | chr2_1:78895490-78895509 | Msa0227640:CDS | 45.0% | |
| ACCCACTCCTCATGATACTT+GGG | + | chr2_1:78895494-78895513 | None:intergenic | 45.0% | |
| AACCCACTCCTCATGATACT+TGG | + | chr2_1:78895495-78895514 | None:intergenic | 45.0% | |
| CTCGTGCTAATGAAAGGAAC+AGG | - | chr2_1:78895525-78895544 | Msa0227640:intron | 45.0% | |
| AAAGGAACAGGCGCAATGAT+AGG | - | chr2_1:78895537-78895556 | Msa0227640:intron | 45.0% | |
| ATAGGCCTCGTAATAACGAC+AGG | - | chr2_1:78895555-78895574 | Msa0227640:intron | 45.0% | |
| CTTGACCTGTCGTTATTACG+AGG | + | chr2_1:78895563-78895582 | None:intergenic | 45.0% | |
| TGAACCGAGACATGCAAAGT+AGG | - | chr2_1:78895611-78895630 | Msa0227640:intron | 45.0% | |
| ! | TTGGGAGGGTAAGCATTGTT+TGG | + | chr2_1:78895664-78895683 | None:intergenic | 45.0% |
| GGATATGCACCTCCAAATCA+AGG | - | chr2_1:78895742-78895761 | Msa0227640:intron | 45.0% | |
| TATGCACCTCCAAATCAAGG+CGG | - | chr2_1:78895745-78895764 | Msa0227640:intron | 45.0% | |
| !! | TGCCCCGGATAGTTATTTTG+AGG | + | chr2_1:78895901-78895920 | None:intergenic | 45.0% |
| !!! | ATGTTCTGGTTTTGTTGCCC+CGG | + | chr2_1:78895916-78895935 | None:intergenic | 45.0% |
| CAACAAAACCAGAACATGGC+AGG | - | chr2_1:78895919-78895938 | Msa0227640:intron | 45.0% | |
| AAGCAGTGTCTCTTCCAAAC+AGG | + | chr2_1:78895989-78896008 | None:intergenic | 45.0% | |
| TCCAATTGCAGAACTGCCCA+AGG | - | chr2_1:78894832-78894851 | Msa0227640:intron | 50.0% | |
| ACCTTGGGCAGTTCTGCAAT+TGG | + | chr2_1:78894836-78894855 | None:intergenic | 50.0% | |
| AGAACTGCCCAAGGTTCGAT+GGG | - | chr2_1:78894841-78894860 | Msa0227640:intron | 50.0% | |
| GGAAGAACCCATCGAACCTT+GGG | + | chr2_1:78894851-78894870 | None:intergenic | 50.0% | |
| AGGAAGAACCCATCGAACCT+TGG | + | chr2_1:78894852-78894871 | None:intergenic | 50.0% | |
| CTTATACAGAGGGGGGTGAA+TGG | - | chr2_1:78895138-78895157 | Msa0227640:intron | 50.0% | |
| TAAGGGTTGAAGTTCACCCG+TGG | - | chr2_1:78895213-78895232 | Msa0227640:intron | 50.0% | |
| CTAGGCGAGCCCTTCATTAA+TGG | - | chr2_1:78895449-78895468 | Msa0227640:CDS | 50.0% | |
| GAGGCCTACTTTGCATGTCT+CGG | + | chr2_1:78895618-78895637 | None:intergenic | 50.0% | |
| ! | GGGTAAGCATTGTTTGGAGG+TGG | + | chr2_1:78895658-78895677 | None:intergenic | 50.0% |
| ! | GGAGGGTAAGCATTGTTTGG+AGG | + | chr2_1:78895661-78895680 | None:intergenic | 50.0% |
| TTACCCTCCCAACAATGCTG+CGG | - | chr2_1:78895672-78895691 | Msa0227640:intron | 50.0% | |
| ATCCACCAGCATTGTTGGGA+GGG | + | chr2_1:78895702-78895721 | None:intergenic | 50.0% | |
| TATCCACCAGCATTGTTGGG+AGG | + | chr2_1:78895703-78895722 | None:intergenic | 50.0% | |
| GGGTATCCACCAGCATTGTT+GGG | + | chr2_1:78895706-78895725 | None:intergenic | 50.0% | |
| ! | AGGGTATCCACCAGCATTGT+TGG | + | chr2_1:78895707-78895726 | None:intergenic | 50.0% |
| GCATATCCGCCTTGGTTGTT+GGG | + | chr2_1:78895730-78895749 | None:intergenic | 50.0% | |
| TGCATATCCGCCTTGGTTGT+TGG | + | chr2_1:78895731-78895750 | None:intergenic | 50.0% | |
| !! | GTATCCGCCTTGATTTGGAG+GGG | + | chr2_1:78895752-78895771 | None:intergenic | 50.0% |
| !! | CGTATCCGCCTTGATTTGGA+GGG | + | chr2_1:78895753-78895772 | None:intergenic | 50.0% |
| !! | ATCCACCGCCTTGATTTGGA+GGG | + | chr2_1:78895801-78895820 | None:intergenic | 50.0% |
| !! | TATCCACCGCCTTGATTTGG+AGG | + | chr2_1:78895802-78895821 | None:intergenic | 50.0% |
| ! | GGAGCACCATATCCACTGTT+GGG | + | chr2_1:78895880-78895899 | None:intergenic | 50.0% |
| !! | AGGAGCACCATATCCACTGT+TGG | + | chr2_1:78895881-78895900 | None:intergenic | 50.0% |
| GGGGCAACAAAACCAGAACA+TGG | - | chr2_1:78895915-78895934 | Msa0227640:intron | 50.0% | |
| CAGTAGACTCCTGACCTGTT+TGG | - | chr2_1:78895972-78895991 | Msa0227640:intron | 50.0% | |
| GTGTCTCTTCCAAACAGGTC+AGG | + | chr2_1:78895984-78896003 | None:intergenic | 50.0% | |
| TCCAATTGCAGAACTGCCCA+AGG | - | chr2_1:78894832-78894851 | Msa0227640:intron | 50.0% | |
| ACCTTGGGCAGTTCTGCAAT+TGG | + | chr2_1:78894836-78894855 | None:intergenic | 50.0% | |
| AGAACTGCCCAAGGTTCGAT+GGG | - | chr2_1:78894841-78894860 | Msa0227640:intron | 50.0% | |
| GGAAGAACCCATCGAACCTT+GGG | + | chr2_1:78894851-78894870 | None:intergenic | 50.0% | |
| AGGAAGAACCCATCGAACCT+TGG | + | chr2_1:78894852-78894871 | None:intergenic | 50.0% | |
| CTTATACAGAGGGGGGTGAA+TGG | - | chr2_1:78895138-78895157 | Msa0227640:intron | 50.0% | |
| TAAGGGTTGAAGTTCACCCG+TGG | - | chr2_1:78895213-78895232 | Msa0227640:intron | 50.0% | |
| CTAGGCGAGCCCTTCATTAA+TGG | - | chr2_1:78895449-78895468 | Msa0227640:CDS | 50.0% | |
| GAGGCCTACTTTGCATGTCT+CGG | + | chr2_1:78895618-78895637 | None:intergenic | 50.0% | |
| ! | GGGTAAGCATTGTTTGGAGG+TGG | + | chr2_1:78895658-78895677 | None:intergenic | 50.0% |
| ! | GGAGGGTAAGCATTGTTTGG+AGG | + | chr2_1:78895661-78895680 | None:intergenic | 50.0% |
| TTACCCTCCCAACAATGCTG+CGG | - | chr2_1:78895672-78895691 | Msa0227640:intron | 50.0% | |
| ATCCACCAGCATTGTTGGGA+GGG | + | chr2_1:78895702-78895721 | None:intergenic | 50.0% | |
| TATCCACCAGCATTGTTGGG+AGG | + | chr2_1:78895703-78895722 | None:intergenic | 50.0% | |
| GGGTATCCACCAGCATTGTT+GGG | + | chr2_1:78895706-78895725 | None:intergenic | 50.0% | |
| ! | AGGGTATCCACCAGCATTGT+TGG | + | chr2_1:78895707-78895726 | None:intergenic | 50.0% |
| GCATATCCGCCTTGGTTGTT+GGG | + | chr2_1:78895730-78895749 | None:intergenic | 50.0% | |
| TGCATATCCGCCTTGGTTGT+TGG | + | chr2_1:78895731-78895750 | None:intergenic | 50.0% | |
| !! | GTATCCGCCTTGATTTGGAG+GGG | + | chr2_1:78895752-78895771 | None:intergenic | 50.0% |
| !! | CGTATCCGCCTTGATTTGGA+GGG | + | chr2_1:78895753-78895772 | None:intergenic | 50.0% |
| !! | ATCCACCGCCTTGATTTGGA+GGG | + | chr2_1:78895801-78895820 | None:intergenic | 50.0% |
| !! | TATCCACCGCCTTGATTTGG+AGG | + | chr2_1:78895802-78895821 | None:intergenic | 50.0% |
| ! | GGAGCACCATATCCACTGTT+GGG | + | chr2_1:78895880-78895899 | None:intergenic | 50.0% |
| !! | AGGAGCACCATATCCACTGT+TGG | + | chr2_1:78895881-78895900 | None:intergenic | 50.0% |
| GGGGCAACAAAACCAGAACA+TGG | - | chr2_1:78895915-78895934 | Msa0227640:intron | 50.0% | |
| CAGTAGACTCCTGACCTGTT+TGG | - | chr2_1:78895972-78895991 | Msa0227640:intron | 50.0% | |
| GTGTCTCTTCCAAACAGGTC+AGG | + | chr2_1:78895984-78896003 | None:intergenic | 50.0% | |
| CAGAACTGCCCAAGGTTCGA+TGG | - | chr2_1:78894840-78894859 | Msa0227640:intron | 55.0% | |
| AGGCCTCCAGTGCAGAATTC+TGG | - | chr2_1:78895631-78895650 | Msa0227640:intron | 55.0% | |
| GGACCAGAATTCTGCACTGG+AGG | + | chr2_1:78895637-78895656 | None:intergenic | 55.0% | |
| GGTGGACCAGAATTCTGCAC+TGG | + | chr2_1:78895640-78895659 | None:intergenic | 55.0% | |
| TACCCTCCCAACAATGCTGC+GGG | - | chr2_1:78895673-78895692 | Msa0227640:intron | 55.0% | |
| ATCCCGCAGCATTGTTGGGA+GGG | + | chr2_1:78895678-78895697 | None:intergenic | 55.0% | |
| TATCCCGCAGCATTGTTGGG+AGG | + | chr2_1:78895679-78895698 | None:intergenic | 55.0% | |
| GGGTATCCCGCAGCATTGTT+GGG | + | chr2_1:78895682-78895701 | None:intergenic | 55.0% | |
| ! | AGGGTATCCCGCAGCATTGT+TGG | + | chr2_1:78895683-78895702 | None:intergenic | 55.0% |
| GGATACCCTCCCAACAATGC+TGG | - | chr2_1:78895694-78895713 | Msa0227640:intron | 55.0% | |
| TACCCTCCCAACAATGCTGG+TGG | - | chr2_1:78895697-78895716 | Msa0227640:intron | 55.0% | |
| GGATACCCTCCCAACAACCA+AGG | - | chr2_1:78895718-78895737 | Msa0227640:intron | 55.0% | |
| TACCCTCCCAACAACCAAGG+CGG | - | chr2_1:78895721-78895740 | Msa0227640:intron | 55.0% | |
| ATCCGCCTTGGTTGTTGGGA+GGG | + | chr2_1:78895726-78895745 | None:intergenic | 55.0% | |
| TATCCGCCTTGGTTGTTGGG+AGG | + | chr2_1:78895727-78895746 | None:intergenic | 55.0% | |
| ! | TTGGAGGTGCATATCCGCCT+TGG | + | chr2_1:78895738-78895757 | None:intergenic | 55.0% |
| !! | GCGTATCCGCCTTGATTTGG+AGG | + | chr2_1:78895754-78895773 | None:intergenic | 55.0% |
| GGATACGCCCCTCCAAATCA+AGG | - | chr2_1:78895766-78895785 | Msa0227640:intron | 55.0% | |
| TACGCCCCTCCAAATCAAGG+CGG | - | chr2_1:78895769-78895788 | Msa0227640:intron | 55.0% | |
| !! | GCGTATCCGCCTTGATTTGG+AGG | + | chr2_1:78895754-78895773 | None:intergenic | 55.0% |
| GGATACGCCCCTCCAAATCA+AGG | - | chr2_1:78895766-78895785 | Msa0227640:intron | 55.0% | |
| TACGCCCCTCCAAATCAAGG+CGG | - | chr2_1:78895769-78895788 | Msa0227640:intron | 55.0% | |
| !! | TCCACCGCCTTGATTTGGAG+GGG | + | chr2_1:78895800-78895819 | None:intergenic | 55.0% |
| GGGTATCCACCGCCTTGATT+TGG | + | chr2_1:78895805-78895824 | None:intergenic | 55.0% | |
| TATCCACTGTTGGGAGGAGG+AGG | + | chr2_1:78895871-78895890 | None:intergenic | 55.0% | |
| CCATATCCACTGTTGGGAGG+AGG | + | chr2_1:78895874-78895893 | None:intergenic | 55.0% | |
| CCTCCTCCCAACAGTGGATA+TGG | - | chr2_1:78895871-78895890 | Msa0227640:intron | 55.0% | |
| GCACCATATCCACTGTTGGG+AGG | + | chr2_1:78895877-78895896 | None:intergenic | 55.0% | |
| GGGATGCTCCAAATGCTGGA+TGG | - | chr2_1:78895940-78895959 | Msa0227640:intron | 55.0% | |
| CAGAACTGCCCAAGGTTCGA+TGG | - | chr2_1:78894840-78894859 | Msa0227640:intron | 55.0% | |
| AGGCCTCCAGTGCAGAATTC+TGG | - | chr2_1:78895631-78895650 | Msa0227640:intron | 55.0% | |
| GGACCAGAATTCTGCACTGG+AGG | + | chr2_1:78895637-78895656 | None:intergenic | 55.0% | |
| GGTGGACCAGAATTCTGCAC+TGG | + | chr2_1:78895640-78895659 | None:intergenic | 55.0% | |
| TACCCTCCCAACAATGCTGC+GGG | - | chr2_1:78895673-78895692 | Msa0227640:intron | 55.0% | |
| ATCCCGCAGCATTGTTGGGA+GGG | + | chr2_1:78895678-78895697 | None:intergenic | 55.0% | |
| TATCCCGCAGCATTGTTGGG+AGG | + | chr2_1:78895679-78895698 | None:intergenic | 55.0% | |
| GGGTATCCCGCAGCATTGTT+GGG | + | chr2_1:78895682-78895701 | None:intergenic | 55.0% | |
| ! | AGGGTATCCCGCAGCATTGT+TGG | + | chr2_1:78895683-78895702 | None:intergenic | 55.0% |
| GGATACCCTCCCAACAATGC+TGG | - | chr2_1:78895694-78895713 | Msa0227640:intron | 55.0% | |
| TACCCTCCCAACAATGCTGG+TGG | - | chr2_1:78895697-78895716 | Msa0227640:intron | 55.0% | |
| GGATACCCTCCCAACAACCA+AGG | - | chr2_1:78895718-78895737 | Msa0227640:intron | 55.0% | |
| TACCCTCCCAACAACCAAGG+CGG | - | chr2_1:78895721-78895740 | Msa0227640:intron | 55.0% | |
| ATCCGCCTTGGTTGTTGGGA+GGG | + | chr2_1:78895726-78895745 | None:intergenic | 55.0% | |
| TATCCGCCTTGGTTGTTGGG+AGG | + | chr2_1:78895727-78895746 | None:intergenic | 55.0% | |
| ! | TTGGAGGTGCATATCCGCCT+TGG | + | chr2_1:78895738-78895757 | None:intergenic | 55.0% |
| !! | GCGTATCCGCCTTGATTTGG+AGG | + | chr2_1:78895754-78895773 | None:intergenic | 55.0% |
| GGATACGCCCCTCCAAATCA+AGG | - | chr2_1:78895766-78895785 | Msa0227640:intron | 55.0% | |
| TACGCCCCTCCAAATCAAGG+CGG | - | chr2_1:78895769-78895788 | Msa0227640:intron | 55.0% | |
| !! | GCGTATCCGCCTTGATTTGG+AGG | + | chr2_1:78895754-78895773 | None:intergenic | 55.0% |
| GGATACGCCCCTCCAAATCA+AGG | - | chr2_1:78895766-78895785 | Msa0227640:intron | 55.0% | |
| TACGCCCCTCCAAATCAAGG+CGG | - | chr2_1:78895769-78895788 | Msa0227640:intron | 55.0% | |
| !! | TCCACCGCCTTGATTTGGAG+GGG | + | chr2_1:78895800-78895819 | None:intergenic | 55.0% |
| GGGTATCCACCGCCTTGATT+TGG | + | chr2_1:78895805-78895824 | None:intergenic | 55.0% | |
| TATCCACTGTTGGGAGGAGG+AGG | + | chr2_1:78895871-78895890 | None:intergenic | 55.0% | |
| CCATATCCACTGTTGGGAGG+AGG | + | chr2_1:78895874-78895893 | None:intergenic | 55.0% | |
| CCTCCTCCCAACAGTGGATA+TGG | - | chr2_1:78895871-78895890 | Msa0227640:intron | 55.0% | |
| GCACCATATCCACTGTTGGG+AGG | + | chr2_1:78895877-78895896 | None:intergenic | 55.0% | |
| GGGATGCTCCAAATGCTGGA+TGG | - | chr2_1:78895940-78895959 | Msa0227640:intron | 55.0% | |
| AGCTCTGCTGTCCTGTCACC+TGG | - | chr2_1:78894912-78894931 | Msa0227640:intron | 60.0% | |
| TACAGAGGGGGGTGAATGGC+TGG | - | chr2_1:78895142-78895161 | Msa0227640:intron | 60.0% | |
| GAAGGGCTCGCCTAGTGAGA+GGG | + | chr2_1:78895444-78895463 | None:intergenic | 60.0% | |
| TGAAGGGCTCGCCTAGTGAG+AGG | + | chr2_1:78895445-78895464 | None:intergenic | 60.0% | |
| GGGGCGTATCCGCCTTGATT+TGG | + | chr2_1:78895757-78895776 | None:intergenic | 60.0% | |
| GGGGCGTATCCGCCTTGATT+TGG | + | chr2_1:78895757-78895776 | None:intergenic | 60.0% | |
| TACCCTCCCCCCAACATGAG+CGG | - | chr2_1:78895820-78895839 | Msa0227640:intron | 60.0% | |
| AGGAGGTCCGCTCATGTTGG+GGG | + | chr2_1:78895830-78895849 | None:intergenic | 60.0% | |
| GAGGAGGTCCGCTCATGTTG+GGG | + | chr2_1:78895831-78895850 | None:intergenic | 60.0% | |
| GGAGGAGGTCCGCTCATGTT+GGG | + | chr2_1:78895832-78895851 | None:intergenic | 60.0% | |
| AGGAGGAGGTCCGCTCATGT+TGG | + | chr2_1:78895833-78895852 | None:intergenic | 60.0% | |
| CGGCTCATGTTAGGAGGAGG+AGG | + | chr2_1:78895847-78895866 | None:intergenic | 60.0% | |
| ! | GGTCGGCTCATGTTAGGAGG+AGG | + | chr2_1:78895850-78895869 | None:intergenic | 60.0% |
| ! | GGAGGTCGGCTCATGTTAGG+AGG | + | chr2_1:78895853-78895872 | None:intergenic | 60.0% |
| ! | GGAGGAGGTCGGCTCATGTT+AGG | + | chr2_1:78895856-78895875 | None:intergenic | 60.0% |
| CACTGTTGGGAGGAGGAGGT+CGG | + | chr2_1:78895867-78895886 | None:intergenic | 60.0% | |
| ! | GGAGCATCCCTGCCATGTTC+TGG | + | chr2_1:78895930-78895949 | None:intergenic | 60.0% |
| GGCAGGGATGCTCCAAATGC+TGG | - | chr2_1:78895936-78895955 | Msa0227640:intron | 60.0% | |
| AGCTCTGCTGTCCTGTCACC+TGG | - | chr2_1:78894912-78894931 | Msa0227640:intron | 60.0% | |
| TACAGAGGGGGGTGAATGGC+TGG | - | chr2_1:78895142-78895161 | Msa0227640:intron | 60.0% | |
| GAAGGGCTCGCCTAGTGAGA+GGG | + | chr2_1:78895444-78895463 | None:intergenic | 60.0% | |
| TGAAGGGCTCGCCTAGTGAG+AGG | + | chr2_1:78895445-78895464 | None:intergenic | 60.0% | |
| GGGGCGTATCCGCCTTGATT+TGG | + | chr2_1:78895757-78895776 | None:intergenic | 60.0% | |
| GGGGCGTATCCGCCTTGATT+TGG | + | chr2_1:78895757-78895776 | None:intergenic | 60.0% | |
| TACCCTCCCCCCAACATGAG+CGG | - | chr2_1:78895820-78895839 | Msa0227640:intron | 60.0% | |
| AGGAGGTCCGCTCATGTTGG+GGG | + | chr2_1:78895830-78895849 | None:intergenic | 60.0% | |
| GAGGAGGTCCGCTCATGTTG+GGG | + | chr2_1:78895831-78895850 | None:intergenic | 60.0% | |
| GGAGGAGGTCCGCTCATGTT+GGG | + | chr2_1:78895832-78895851 | None:intergenic | 60.0% | |
| AGGAGGAGGTCCGCTCATGT+TGG | + | chr2_1:78895833-78895852 | None:intergenic | 60.0% | |
| CGGCTCATGTTAGGAGGAGG+AGG | + | chr2_1:78895847-78895866 | None:intergenic | 60.0% | |
| ! | GGTCGGCTCATGTTAGGAGG+AGG | + | chr2_1:78895850-78895869 | None:intergenic | 60.0% |
| ! | GGAGGTCGGCTCATGTTAGG+AGG | + | chr2_1:78895853-78895872 | None:intergenic | 60.0% |
| ! | GGAGGAGGTCGGCTCATGTT+AGG | + | chr2_1:78895856-78895875 | None:intergenic | 60.0% |
| CACTGTTGGGAGGAGGAGGT+CGG | + | chr2_1:78895867-78895886 | None:intergenic | 60.0% | |
| ! | GGAGCATCCCTGCCATGTTC+TGG | + | chr2_1:78895930-78895949 | None:intergenic | 60.0% |
| GGCAGGGATGCTCCAAATGC+TGG | - | chr2_1:78895936-78895955 | Msa0227640:intron | 60.0% | |
| GCCCCTCCAAATCAAGGCGG+TGG | - | chr2_1:78895772-78895791 | Msa0227640:intron | 65.0% | |
| GTCCGCTCATGTTGGGGGGA+GGG | + | chr2_1:78895825-78895844 | None:intergenic | 65.0% | |
| GGAGGTCCGCTCATGTTGGG+GGG | + | chr2_1:78895829-78895848 | None:intergenic | 65.0% | |
| CGACCTCCTCCTCCCAACAG+TGG | - | chr2_1:78895865-78895884 | Msa0227640:intron | 65.0% | |
| GCCCCTCCAAATCAAGGCGG+TGG | - | chr2_1:78895772-78895791 | Msa0227640:intron | 65.0% | |
| GTCCGCTCATGTTGGGGGGA+GGG | + | chr2_1:78895825-78895844 | None:intergenic | 65.0% | |
| GGAGGTCCGCTCATGTTGGG+GGG | + | chr2_1:78895829-78895848 | None:intergenic | 65.0% | |
| CGACCTCCTCCTCCCAACAG+TGG | - | chr2_1:78895865-78895884 | Msa0227640:intron | 65.0% | |
| GGTCCGCTCATGTTGGGGGG+AGG | + | chr2_1:78895826-78895845 | None:intergenic | 70.0% | |
| GGTCCGCTCATGTTGGGGGG+AGG | + | chr2_1:78895826-78895845 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 78893888 | 78896302 | 78893888 | ID=Msa0227640;Name=Msa0227640 |
| chr2_1 | mRNA | 78893888 | 78896302 | 78893888 | ID=Msa0227640-mRNA-1;Parent=Msa0227640;Name=Msa0227640-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.33|0.25|0.75|0.33|0.25|4|689|105 |
| chr2_1 | exon | 78893888 | 78894737 | 78893888 | ID=Msa0227640-mRNA-1:exon:24028;Parent=Msa0227640-mRNA-1 |
| chr2_1 | exon | 78895282 | 78895336 | 78895282 | ID=Msa0227640-mRNA-1:exon:24027;Parent=Msa0227640-mRNA-1 |
| chr2_1 | exon | 78895443 | 78895539 | 78895443 | ID=Msa0227640-mRNA-1:exon:24026;Parent=Msa0227640-mRNA-1 |
| chr2_1 | exon | 78896298 | 78896302 | 78896298 | ID=Msa0227640-mRNA-1:exon:24025;Parent=Msa0227640-mRNA-1 |
| chr2_1 | CDS | 78896298 | 78896302 | 78896298 | ID=Msa0227640-mRNA-1:cds;Parent=Msa0227640-mRNA-1 |
| chr2_1 | CDS | 78895443 | 78895539 | 78895443 | ID=Msa0227640-mRNA-1:cds;Parent=Msa0227640-mRNA-1 |
| chr2_1 | CDS | 78895282 | 78895336 | 78895282 | ID=Msa0227640-mRNA-1:cds;Parent=Msa0227640-mRNA-1 |
| chr2_1 | CDS | 78894577 | 78894737 | 78894577 | ID=Msa0227640-mRNA-1:cds;Parent=Msa0227640-mRNA-1 |
| chr2_1 | three_prime_UTR | 78893888 | 78894576 | 78893888 | ID=Msa0227640-mRNA-1:three_prime_utr;Parent=Msa0227640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
