Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227530 | XP_013464597.1 | 87.234 | 376 | 28 | 3 | 1 | 357 | 1 | 375 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227530 | sp|Q9LKA5|MORF8_ARATH | 55.923 | 363 | 115 | 5 | 1 | 318 | 1 | 363 | 9.27e-97 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227530 | A0A072V9Y5 | 87.234 | 376 | 28 | 3 | 1 | 357 | 1 | 375 | 0.0 | 571 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0227530 | Msa0227640 | 0.833965 | 3.939245e-56 | -8.615850e-47 |
| Msa0227530 | Msa0333220 | 0.857003 | 2.194757e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227530 | MtrunA17_Chr2g0316311 | 87.234 | 376 | 28 | 3 | 1 | 357 | 1 | 375 | 0.0 | 571 |
| Msa0227530 | MtrunA17_Chr1g0148081 | 79.109 | 359 | 41 | 7 | 1 | 357 | 1 | 327 | 0.0 | 518 |
| Msa0227530 | MtrunA17_Chr2g0316321 | 68.306 | 183 | 33 | 3 | 1 | 183 | 1 | 158 | 8.14e-74 | 226 |
| Msa0227530 | MtrunA17_Chr4g0067641 | 53.514 | 185 | 75 | 4 | 15 | 193 | 9 | 188 | 1.62e-60 | 195 |
| Msa0227530 | MtrunA17_Chr1g0166671 | 46.471 | 170 | 82 | 4 | 68 | 235 | 54 | 216 | 8.33e-43 | 148 |
| Msa0227530 | MtrunA17_Chr1g0187251 | 44.720 | 161 | 80 | 4 | 76 | 234 | 80 | 233 | 1.56e-40 | 142 |
| Msa0227530 | MtrunA17_Chr2g0280611 | 47.794 | 136 | 63 | 3 | 85 | 214 | 77 | 210 | 1.72e-37 | 134 |
| Msa0227530 | MtrunA17_Chr2g0277431 | 32.210 | 267 | 154 | 9 | 23 | 285 | 56 | 299 | 2.33e-24 | 103 |
| Msa0227530 | MtrunA17_Chr6g0467031 | 39.796 | 98 | 57 | 2 | 92 | 187 | 72 | 169 | 2.51e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227530 | AT3G15000.1 | 55.923 | 363 | 115 | 5 | 1 | 318 | 1 | 363 | 9.43e-98 | 295 |
| Msa0227530 | AT3G06790.2 | 52.660 | 188 | 76 | 4 | 15 | 193 | 9 | 192 | 8.94e-56 | 182 |
| Msa0227530 | AT3G06790.1 | 52.128 | 188 | 77 | 4 | 15 | 193 | 9 | 192 | 9.08e-55 | 180 |
| Msa0227530 | AT1G72530.1 | 45.578 | 147 | 75 | 2 | 69 | 213 | 29 | 172 | 4.92e-46 | 155 |
| Msa0227530 | AT1G72530.2 | 44.371 | 151 | 75 | 3 | 69 | 213 | 29 | 176 | 9.31e-44 | 150 |
| Msa0227530 | AT2G35240.1 | 39.669 | 242 | 119 | 9 | 10 | 235 | 1 | 231 | 2.91e-43 | 150 |
| Msa0227530 | AT1G32580.1 | 37.395 | 238 | 127 | 7 | 10 | 235 | 1 | 228 | 2.77e-42 | 147 |
| Msa0227530 | AT1G11430.1 | 47.101 | 138 | 70 | 2 | 85 | 221 | 77 | 212 | 8.34e-38 | 135 |
| Msa0227530 | AT1G53260.1 | 48.207 | 251 | 86 | 10 | 136 | 354 | 3 | 241 | 3.34e-37 | 135 |
| Msa0227530 | AT1G53260.2 | 73.913 | 92 | 24 | 0 | 136 | 227 | 3 | 94 | 4.27e-37 | 134 |
| Msa0227530 | AT4G20020.2 | 30.094 | 319 | 172 | 10 | 5 | 309 | 4 | 285 | 2.63e-29 | 117 |
| Msa0227530 | AT4G20020.1 | 30.094 | 319 | 172 | 10 | 5 | 309 | 4 | 285 | 5.07e-29 | 116 |
| Msa0227530 | AT5G44780.1 | 38.095 | 105 | 63 | 2 | 91 | 193 | 78 | 182 | 5.25e-19 | 89.0 |
Find 180 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAATGAATTTGCGTTTC+AGG | 0.114389 | 2_1:+78792309 | Msa0227530:three_prime_UTR |
| GGTGGTTAGGGTTAGGGTTT+TGG | 0.131447 | 2_1:-78789349 | None:intergenic |
| GAAATGTAAATTAGGGTTTA+TGG | 0.141153 | 2_1:-78789257 | None:intergenic |
| TTGGGAATGAAATGTAAATT+AGG | 0.195322 | 2_1:-78789265 | None:intergenic |
| AAAACCTTCGCTGAGGTTAT+TGG | 0.223039 | 2_1:+78789675 | Msa0227530:CDS |
| GAAAGAGAGAGCGGAGGATA+AGG | 0.250347 | 2_1:-78789409 | None:intergenic |
| ACTAGACACTACTTTGCTTT+TGG | 0.255524 | 2_1:+78790853 | Msa0227530:CDS |
| CCTCCTCCCAACAGTGGATA+TGG | 0.278148 | 2_1:+78792039 | Msa0227530:CDS |
| TCAACGATCCTAACCCTAAC+TGG | 0.286264 | 2_1:+78789532 | Msa0227530:CDS |
| CTAGGCGAGCCCTTCATTAA+TGG | 0.289523 | 2_1:+78791616 | Msa0227530:intron |
| GAGGAAGGTGGTTAGGGTTA+GGG | 0.291280 | 2_1:-78789355 | None:intergenic |
| AGAGGAAGGTGGTTAGGGTT+AGG | 0.294206 | 2_1:-78789356 | None:intergenic |
| GAGGCATCCCTGCCATGTTC+TGG | 0.294548 | 2_1:-78792095 | None:intergenic |
| AAATGTAAATTAGGGTTTAT+GGG | 0.296731 | 2_1:-78789256 | None:intergenic |
| GGAGGAGGTCCGCTCATGTT+GGG | 0.310269 | 2_1:-78791997 | None:intergenic |
| TGGGAATGAAATGTAAATTA+GGG | 0.315040 | 2_1:-78789264 | None:intergenic |
| AGCGAGAGAGGAAGGTGGTT+AGG | 0.323331 | 2_1:-78789362 | None:intergenic |
| AGCAAAATCGTTTCCTTTGG+TGG | 0.332597 | 2_1:-78789564 | None:intergenic |
| AGGGTATCCCGCAGCATTGT+TGG | 0.342420 | 2_1:-78791848 | None:intergenic |
| TTGGGAGGGTAAGCATTGTT+TGG | 0.344705 | 2_1:-78791829 | None:intergenic |
| ATGATCCAGACAAATTCTTT+TGG | 0.345391 | 2_1:+78792188 | Msa0227530:three_prime_UTR |
| TGCATATCCGCCTTGGTTGT+TGG | 0.345680 | 2_1:-78791896 | None:intergenic |
| GGTGGACGATTGGCCCAGTT+AGG | 0.355387 | 2_1:-78789546 | None:intergenic |
| GAGGAGGTCCGCTCATGTTG+GGG | 0.358951 | 2_1:-78791996 | None:intergenic |
| TTATTTGACCATCCAGCATT+TGG | 0.363386 | 2_1:-78792117 | None:intergenic |
| AGGCCTCCAGTGCAGAATTC+TGG | 0.365211 | 2_1:+78791799 | Msa0227530:CDS |
| GGGGCGTATCCGCCTTGATT+TGG | 0.368787 | 2_1:-78791922 | None:intergenic |
| GGGGCGTATCCGCCTTGATT+TGG | 0.368787 | 2_1:-78791946 | None:intergenic |
| AGTGGTGGTTGTGGTGGAGA+TGG | 0.373183 | 2_1:-78789385 | None:intergenic |
| CAGTAGACTCCTGACCTGTT+TGG | 0.380112 | 2_1:+78792141 | Msa0227530:exon |
| GCGAGAGAGGAAGGTGGTTA+GGG | 0.384328 | 2_1:-78789361 | None:intergenic |
| GCATATCCGCCTTGGTTGTT+GGG | 0.388442 | 2_1:-78791895 | None:intergenic |
| AAAGAGAGAGCGGAGGATAA+GGG | 0.389932 | 2_1:-78789408 | None:intergenic |
| GGGTATCCCGCAGCATTGTT+GGG | 0.391876 | 2_1:-78791847 | None:intergenic |
| GGGTATCCACCGCCTTGATT+TGG | 0.394832 | 2_1:-78791970 | None:intergenic |
| TTATATACCTTTGAGTTTGT+AGG | 0.397569 | 2_1:-78790899 | None:intergenic |
| TGAAGAGAAGAGAGTGAGAT+TGG | 0.397833 | 2_1:-78789284 | None:intergenic |
| TCATGATACTTGGGATCATA+TGG | 0.400148 | 2_1:-78791649 | None:intergenic |
| GGAGGAGGTCGGCTCATGTT+AGG | 0.401789 | 2_1:-78792021 | None:intergenic |
| AGGGTATCCACCAGCATTGT+TGG | 0.402771 | 2_1:-78791872 | None:intergenic |
| TAGGCGAGCCCTTCATTAAT+GGG | 0.402836 | 2_1:+78791617 | Msa0227530:intron |
| TTCACATTCAAATAAGAATC+AGG | 0.404060 | 2_1:-78791036 | None:intergenic |
| GGAGGGTAAGCATTGTTTGG+AGG | 0.406350 | 2_1:-78791826 | None:intergenic |
| ATTGGCCAAAAGAATTTGTC+TGG | 0.406830 | 2_1:-78792193 | None:intergenic |
| TCGAGCAAAATCGTTTCCTT+TGG | 0.407598 | 2_1:-78789567 | None:intergenic |
| AACCCACTCCTCATGATACT+TGG | 0.409695 | 2_1:-78791659 | None:intergenic |
| GGAAGAGGTGGTAGGGCGAG+TGG | 0.413172 | 2_1:-78789508 | None:intergenic |
| CGATTGGCCCAGTTAGGGTT+AGG | 0.415665 | 2_1:-78789540 | None:intergenic |
| TGCTCCTCAAAATAACTATC+CGG | 0.416452 | 2_1:+78792062 | Msa0227530:CDS |
| AATGTGAAGGAGCAAGATTA+TGG | 0.421958 | 2_1:+78791051 | Msa0227530:CDS |
| CGTTTCCTTTGGTGGACGAT+TGG | 0.426666 | 2_1:-78789556 | None:intergenic |
| ACGGGAGGTGATGGCGGCGG+CGG | 0.427683 | 2_1:-78789454 | None:intergenic |
| GTGGAGAAAGCGCGGAAGGA+AGG | 0.431154 | 2_1:-78789489 | None:intergenic |
| TGGTGGAGATGGAGCGAGAG+AGG | 0.431194 | 2_1:-78789374 | None:intergenic |
| ACCTGAAACGCAAATTCATT+AGG | 0.432576 | 2_1:-78792310 | None:intergenic |
| GTTAGGATCGTTGAGGGAAG+AGG | 0.434294 | 2_1:-78789523 | None:intergenic |
| AAAGGAACAGGCGCAATGAT+AGG | 0.434856 | 2_1:+78791704 | Msa0227530:CDS |
| GGAAGGGAGGAGGATGTGAC+GGG | 0.435127 | 2_1:-78789472 | None:intergenic |
| GAGGATGTGACGGGAGGTGA+TGG | 0.435767 | 2_1:-78789463 | None:intergenic |
| TGAACACTGGCTTGTGGTTG+TGG | 0.437124 | 2_1:+78789602 | Msa0227530:CDS |
| GGAGATGGAGCGAGAGAGGA+AGG | 0.440256 | 2_1:-78789370 | None:intergenic |
| GGGTATCCACCAGCATTGTT+GGG | 0.447108 | 2_1:-78791871 | None:intergenic |
| AAAGAGGACGGAGACGGCGG+AGG | 0.447518 | 2_1:-78789431 | None:intergenic |
| GCGTATCCGCCTTGATTTGG+AGG | 0.451222 | 2_1:-78791943 | None:intergenic |
| CGCAAATTCATTAGGAAGAA+GGG | 0.463797 | 2_1:-78792302 | None:intergenic |
| CTCGTGCTAATGAAAGGAAC+AGG | 0.465708 | 2_1:+78791692 | Msa0227530:CDS |
| GGATAAGGGAGTGGTGGTTG+TGG | 0.467982 | 2_1:-78789394 | None:intergenic |
| GAAGAGAAGAGAGTGAGATT+GGG | 0.468266 | 2_1:-78789283 | None:intergenic |
| TCTCTGGTAGGATCACCTTC+AGG | 0.468615 | 2_1:-78789630 | None:intergenic |
| GCGTATCCGCCTTGATTTGG+AGG | 0.469236 | 2_1:-78791919 | None:intergenic |
| TATCCACCGCCTTGATTTGG+AGG | 0.469888 | 2_1:-78791967 | None:intergenic |
| TGGAGAAAGCGCGGAAGGAA+GGG | 0.471704 | 2_1:-78789488 | None:intergenic |
| AAGCAGTGTCTCTTCCAAAC+AGG | 0.473380 | 2_1:-78792155 | None:intergenic |
| GGAAGAACCCATCGAACCTT+GGG | 0.475427 | 2_1:-78791015 | None:intergenic |
| GTGATGGCGGCGGCGGAAAG+AGG | 0.477525 | 2_1:-78789447 | None:intergenic |
| AGGAGGAGGTCCGCTCATGT+TGG | 0.477573 | 2_1:-78791998 | None:intergenic |
| GTGGACGATTGGCCCAGTTA+GGG | 0.478383 | 2_1:-78789545 | None:intergenic |
| GGGTAAGCATTGTTTGGAGG+TGG | 0.485288 | 2_1:-78791823 | None:intergenic |
| CAACAAAACCAGAACATGGC+AGG | 0.486858 | 2_1:+78792087 | Msa0227530:CDS |
| ACGCAAATTCATTAGGAAGA+AGG | 0.487709 | 2_1:-78792303 | None:intergenic |
| GAGAGCGGAGGATAAGGGAG+TGG | 0.489044 | 2_1:-78789403 | None:intergenic |
| ACTATCAATAATCTCATCTC+TGG | 0.490512 | 2_1:-78789646 | None:intergenic |
| CGGCGGAAAGAGGACGGAGA+CGG | 0.496211 | 2_1:-78789437 | None:intergenic |
| TAAGGGAGTGGTGGTTGTGG+TGG | 0.497201 | 2_1:-78789391 | None:intergenic |
| AACTGCTTGCCCATTAATGA+AGG | 0.499721 | 2_1:-78791626 | None:intergenic |
| GCAGGGATGCCTCCAAATGC+TGG | 0.500963 | 2_1:+78792105 | Msa0227530:CDS |
| CAGAACTGCCCAAGGTTCGA+TGG | 0.506009 | 2_1:+78791007 | Msa0227530:intron |
| GCTCCTCAAAATAACTATCC+GGG | 0.508204 | 2_1:+78792063 | Msa0227530:CDS |
| AGCGGAGGATAAGGGAGTGG+TGG | 0.509385 | 2_1:-78789400 | None:intergenic |
| ATCCGCCTTGGTTGTTGGGA+GGG | 0.510147 | 2_1:-78791891 | None:intergenic |
| AGGAAGAACCCATCGAACCT+TGG | 0.510570 | 2_1:-78791016 | None:intergenic |
| CGGAAAGAGGACGGAGACGG+CGG | 0.514824 | 2_1:-78789434 | None:intergenic |
| TTTGACCATCCAGCATTTGG+AGG | 0.515696 | 2_1:-78792114 | None:intergenic |
| ATCCACCGCCTTGATTTGGA+GGG | 0.518306 | 2_1:-78791966 | None:intergenic |
| GTGTCTCTTCCAAACAGGTC+AGG | 0.518983 | 2_1:-78792150 | None:intergenic |
| GGAGGTCCGCTCATGTTGGG+GGG | 0.523071 | 2_1:-78791994 | None:intergenic |
| AGGAAGGGAGGAGGATGTGA+CGG | 0.524718 | 2_1:-78789473 | None:intergenic |
| TACCCTCCCAACAATGCTGC+GGG | 0.525044 | 2_1:+78791841 | Msa0227530:CDS |
| AGGAGCACCATATCCACTGT+TGG | 0.526278 | 2_1:-78792046 | None:intergenic |
| AAGCGCGGAAGGAAGGGAGG+AGG | 0.530215 | 2_1:-78789482 | None:intergenic |
| GCCCCTCCAAATCAAGGCGG+TGG | 0.530754 | 2_1:+78791964 | Msa0227530:CDS |
| TCCAATTGCAGAACTGCCCA+AGG | 0.531629 | 2_1:+78790999 | Msa0227530:intron |
| ATCTATAAAATCTCATTACA+TGG | 0.534196 | 2_1:-78792265 | None:intergenic |
| GGATACCCTCCCAACAATGC+TGG | 0.535372 | 2_1:+78791862 | Msa0227530:CDS |
| TTGGAGGTGCATATCCGCCT+TGG | 0.535415 | 2_1:-78791903 | None:intergenic |
| GGAGCACCATATCCACTGTT+GGG | 0.536295 | 2_1:-78792045 | None:intergenic |
| GTTAGGGTTAGGATCGTTGA+GGG | 0.537327 | 2_1:-78789529 | None:intergenic |
| GTGACGGGAGGTGATGGCGG+CGG | 0.538120 | 2_1:-78789457 | None:intergenic |
| ACCCACTCCTCATGATACTT+GGG | 0.538686 | 2_1:-78791658 | None:intergenic |
| GGATACGCCCCTCCAAATCA+AGG | 0.539244 | 2_1:+78791934 | Msa0227530:CDS |
| GGATACGCCCCTCCAAATCA+AGG | 0.539244 | 2_1:+78791958 | Msa0227530:CDS |
| CGTTGAGGGAAGAGGTGGTA+GGG | 0.541372 | 2_1:-78789515 | None:intergenic |
| GGATATGCACCTCCAAATCA+AGG | 0.542378 | 2_1:+78791910 | Msa0227530:CDS |
| TATCCGCCTTGGTTGTTGGG+AGG | 0.545068 | 2_1:-78791892 | None:intergenic |
| GAGGCCTACTTTGCATGTCT+CGG | 0.545839 | 2_1:-78791783 | None:intergenic |
| ATTCATTACTATATCTACAT+TGG | 0.546046 | 2_1:-78792211 | None:intergenic |
| AGGAGGTCCGCTCATGTTGG+GGG | 0.547032 | 2_1:-78791995 | None:intergenic |
| CGTATCCGCCTTGATTTGGA+GGG | 0.547247 | 2_1:-78791942 | None:intergenic |
| TGATTCTTATTTGAATGTGA+AGG | 0.548912 | 2_1:+78791038 | Msa0227530:CDS |
| TATCCACTGTTGGGAGGAGG+AGG | 0.551690 | 2_1:-78792036 | None:intergenic |
| GATGGAGCGAGAGAGGAAGG+TGG | 0.551999 | 2_1:-78789367 | None:intergenic |
| AGAAAGCGCGGAAGGAAGGG+AGG | 0.553501 | 2_1:-78789485 | None:intergenic |
| ACATAATATAAATCATGTCT+CGG | 0.553942 | 2_1:-78792239 | None:intergenic |
| GGAGGTCGGCTCATGTTAGG+AGG | 0.555007 | 2_1:-78792018 | None:intergenic |
| TTTACAGTGAAGAAGAAGCT+AGG | 0.556151 | 2_1:+78790809 | Msa0227530:intron |
| ATCCACCAGCATTGTTGGGA+GGG | 0.556921 | 2_1:-78791867 | None:intergenic |
| AGGGAGGAGGATGTGACGGG+AGG | 0.558887 | 2_1:-78789469 | None:intergenic |
| TCAATAATCTCATCTCTGGT+AGG | 0.562548 | 2_1:-78789642 | None:intergenic |
| CCATATCCACTGTTGGGAGG+AGG | 0.564256 | 2_1:-78792039 | None:intergenic |
| AGAACTGCCCAAGGTTCGAT+GGG | 0.567973 | 2_1:+78791008 | Msa0227530:intron |
| ACAATGCTCGTGCTAATGAA+AGG | 0.568451 | 2_1:+78791686 | Msa0227530:CDS |
| CGGCTCATGTTAGGAGGAGG+AGG | 0.570215 | 2_1:-78792012 | None:intergenic |
| CAACGATCCTAACCCTAACT+GGG | 0.571742 | 2_1:+78789533 | Msa0227530:CDS |
| GCGAGTGGAGAAAGCGCGGA+AGG | 0.573434 | 2_1:-78789493 | None:intergenic |
| ATCCCGCAGCATTGTTGGGA+GGG | 0.574116 | 2_1:-78791843 | None:intergenic |
| TGAAAGGAGAAGGGAAAATG+TGG | 0.578997 | 2_1:+78791756 | Msa0227530:CDS |
| GATGTGACGGGAGGTGATGG+CGG | 0.579618 | 2_1:-78789460 | None:intergenic |
| TCCACCGCCTTGATTTGGAG+GGG | 0.583520 | 2_1:-78791965 | None:intergenic |
| CTTGACCTGTCGTTATTACG+AGG | 0.583533 | 2_1:-78791727 | None:intergenic |
| TACCCTCCCAACAATGCTGG+TGG | 0.587922 | 2_1:+78791865 | Msa0227530:CDS |
| GGTGGACCAGAATTCTGCAC+TGG | 0.588014 | 2_1:-78791805 | None:intergenic |
| TCGTTGAGGGAAGAGGTGGT+AGG | 0.588704 | 2_1:-78789516 | None:intergenic |
| ATCCCAAGTATCATGAGGAG+TGG | 0.594093 | 2_1:+78791656 | Msa0227530:CDS |
| ACGGCGGAGGAAAGAGAGAG+CGG | 0.594368 | 2_1:-78789418 | None:intergenic |
| AGGATCGTTGAGGGAAGAGG+TGG | 0.594815 | 2_1:-78789520 | None:intergenic |
| CACTGTTGGGAGGAGGAGGT+CGG | 0.595244 | 2_1:-78792032 | None:intergenic |
| GAGCTTTCCTACAAACTCAA+AGG | 0.597466 | 2_1:+78790892 | Msa0227530:CDS |
| ATAGGCCTCGTAATAACGAC+AGG | 0.597786 | 2_1:+78791722 | Msa0227530:CDS |
| TCTCTTCACACACACTGCGA+TGG | 0.598615 | 2_1:+78789299 | Msa0227530:exon |
| GGTCGGCTCATGTTAGGAGG+AGG | 0.598819 | 2_1:-78792015 | None:intergenic |
| TGGCGGCGGCGGAAAGAGGA+CGG | 0.599545 | 2_1:-78789443 | None:intergenic |
| TGAACCGAGACATGCAAAGT+AGG | 0.601888 | 2_1:+78791779 | Msa0227530:CDS |
| GGACCAGAATTCTGCACTGG+AGG | 0.603026 | 2_1:-78791802 | None:intergenic |
| CTGGGCCAATCGTCCACCAA+AGG | 0.609373 | 2_1:+78789551 | Msa0227530:CDS |
| TCCCAAGTATCATGAGGAGT+GGG | 0.609416 | 2_1:+78791657 | Msa0227530:CDS |
| CTCCTCAAAATAACTATCCG+GGG | 0.615375 | 2_1:+78792064 | Msa0227530:CDS |
| GGATGCCTCCAAATGCTGGA+TGG | 0.615571 | 2_1:+78792109 | Msa0227530:CDS |
| TATCCACCAGCATTGTTGGG+AGG | 0.617145 | 2_1:-78791868 | None:intergenic |
| GTATCCGCCTTGATTTGGAG+GGG | 0.625704 | 2_1:-78791941 | None:intergenic |
| TATCCCGCAGCATTGTTGGG+AGG | 0.627821 | 2_1:-78791844 | None:intergenic |
| AACAAAACCAGAACATGGCA+GGG | 0.630196 | 2_1:+78792088 | Msa0227530:CDS |
| ACTGCTTGCCCATTAATGAA+GGG | 0.632956 | 2_1:-78791625 | None:intergenic |
| GTGAAGGAGCAAGATTATGG+AGG | 0.633136 | 2_1:+78791054 | Msa0227530:CDS |
| TTACCCTCCCAACAATGCTG+CGG | 0.636542 | 2_1:+78791840 | Msa0227530:CDS |
| CCTTCCAATAACCTCAGCGA+AGG | 0.647794 | 2_1:-78789679 | None:intergenic |
| AGTTAGGGTTAGGATCGTTG+AGG | 0.648596 | 2_1:-78789530 | None:intergenic |
| GCGGAGGAAAGAGAGAGCGG+AGG | 0.650629 | 2_1:-78789415 | None:intergenic |
| CCTTCGCTGAGGTTATTGGA+AGG | 0.652376 | 2_1:+78789679 | Msa0227530:CDS |
| GTGGTTGTGGAGAAGCCTGA+AGG | 0.665057 | 2_1:+78789615 | Msa0227530:CDS |
| GCACCATATCCACTGTTGGG+AGG | 0.668110 | 2_1:-78792042 | None:intergenic |
| ATATGATCCCAAGTATCATG+AGG | 0.674281 | 2_1:+78791651 | Msa0227530:CDS |
| CGACCTCCTCCTCCCAACAG+TGG | 0.676748 | 2_1:+78792033 | Msa0227530:CDS |
| TTACATCAAAACCTTCGCTG+AGG | 0.678193 | 2_1:+78789668 | Msa0227530:CDS |
| GGATACCCTCCCAACAACCA+AGG | 0.680141 | 2_1:+78791886 | Msa0227530:CDS |
| GGGGCAACAAAACCAGAACA+TGG | 0.684830 | 2_1:+78792083 | Msa0227530:CDS |
| TAGGGCGAGTGGAGAAAGCG+CGG | 0.697019 | 2_1:-78789497 | None:intergenic |
| TACCCTCCCAACAACCAAGG+CGG | 0.715418 | 2_1:+78791889 | Msa0227530:CDS |
| TACGCCCCTCCAAATCAAGG+CGG | 0.767202 | 2_1:+78791961 | Msa0227530:CDS |
| TACGCCCCTCCAAATCAAGG+CGG | 0.768249 | 2_1:+78791937 | Msa0227530:CDS |
| TATGCACCTCCAAATCAAGG+CGG | 0.782403 | 2_1:+78791913 | Msa0227530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTAAATTTTCAATTTTTTT+AGG | + | chr2_1:78789799-78789818 | Msa0227530:intron | 10.0% |
| !!! | GTAAATTTTCAATTTTTTTA+GGG | + | chr2_1:78789800-78789819 | Msa0227530:intron | 10.0% |
| !! | AAAAAAAAGTAATAGATATA+GGG | - | chr2_1:78790667-78790686 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGTAATAGATAT+AGG | - | chr2_1:78790668-78790687 | None:intergenic | 10.0% |
| !! | ACAATATAAACCTAAAAATA+CGG | - | chr2_1:78789769-78789788 | None:intergenic | 15.0% |
| !! | TATAAGAAATTATGGAAAAT+AGG | + | chr2_1:78790092-78790111 | Msa0227530:intron | 15.0% |
| !!! | CTTTTATTATACTTAATTGT+AGG | - | chr2_1:78791195-78791214 | None:intergenic | 15.0% |
| !!! | TCTAAATAGCATTTTTTAAA+TGG | - | chr2_1:78791232-78791251 | None:intergenic | 15.0% |
| !! | AAATGTAAATTAGGGTTTAT+GGG | - | chr2_1:78789259-78789278 | None:intergenic | 20.0% |
| !!! | CTTTTTTATTCCGTATTTTT+AGG | + | chr2_1:78789756-78789775 | Msa0227530:intron | 20.0% |
| !!! | CTATTTTATTGAATTTGATG+TGG | + | chr2_1:78789960-78789979 | Msa0227530:intron | 20.0% |
| !!! | TAATTTTTCTGAATTTGATG+TGG | + | chr2_1:78790018-78790037 | Msa0227530:intron | 20.0% |
| !! | TTGTGCATTATAAGAAATTA+TGG | + | chr2_1:78790084-78790103 | Msa0227530:intron | 20.0% |
| !! | ACAAGTTCTCAAATATATTA+TGG | - | chr2_1:78790119-78790138 | None:intergenic | 20.0% |
| !!! | GATTATAAACAAAGTGATTT+TGG | + | chr2_1:78790352-78790371 | Msa0227530:intron | 20.0% |
| !! | TATAGAAATAGCTTATACAT+AGG | - | chr2_1:78790467-78790486 | None:intergenic | 20.0% |
| !! | ACTCTGATTATTTATTTATG+TGG | + | chr2_1:78790773-78790792 | Msa0227530:intron | 20.0% |
| !! | TGATTATTTATTTATGTGGT+TGG | + | chr2_1:78790777-78790796 | Msa0227530:intron | 20.0% |
| !! | GACATAATGAATATAATTAG+AGG | - | chr2_1:78791105-78791124 | None:intergenic | 20.0% |
| !! | ATACATCAAACAACAAATAT+TGG | - | chr2_1:78791570-78791589 | None:intergenic | 20.0% |
| !! | ATTCATTACTATATCTACAT+TGG | - | chr2_1:78792214-78792233 | None:intergenic | 20.0% |
| !! | ACATAATATAAATCATGTCT+CGG | - | chr2_1:78792242-78792261 | None:intergenic | 20.0% |
| !! | ATCTATAAAATCTCATTACA+TGG | - | chr2_1:78792268-78792287 | None:intergenic | 20.0% |
| ! | GAAATGTAAATTAGGGTTTA+TGG | - | chr2_1:78789260-78789279 | None:intergenic | 25.0% |
| ! | TGGGAATGAAATGTAAATTA+GGG | - | chr2_1:78789267-78789286 | None:intergenic | 25.0% |
| ! | TTGGGAATGAAATGTAAATT+AGG | - | chr2_1:78789268-78789287 | None:intergenic | 25.0% |
| !! | ATTGAATTTGATGTGGTTTT+AGG | + | chr2_1:78789967-78789986 | Msa0227530:intron | 25.0% |
| !!! | TTTAGGTCTATGTTAGTTTT+TGG | + | chr2_1:78790042-78790061 | Msa0227530:intron | 25.0% |
| !!! | TTAGGTCTATGTTAGTTTTT+GGG | + | chr2_1:78790043-78790062 | Msa0227530:intron | 25.0% |
| ! | GCATTATGAGAATTTGAATA+TGG | + | chr2_1:78790155-78790174 | Msa0227530:intron | 25.0% |
| ! | AGAATACTATTATGTGAGAA+TGG | + | chr2_1:78790306-78790325 | Msa0227530:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | + | chr2_1:78790571-78790590 | Msa0227530:intron | 25.0% |
| !!! | ATTGAGAATATTGATTCTGA+AGG | + | chr2_1:78790715-78790734 | Msa0227530:intron | 25.0% |
| !! | TTATATACCTTTGAGTTTGT+AGG | - | chr2_1:78790902-78790921 | None:intergenic | 25.0% |
| !! | ACTCAAAGGTATATAATACA+TGG | + | chr2_1:78790906-78790925 | Msa0227530:intron | 25.0% |
| ! | TTCACATTCAAATAAGAATC+AGG | - | chr2_1:78791039-78791058 | None:intergenic | 25.0% |
| !! | TGATTCTTATTTGAATGTGA+AGG | + | chr2_1:78791038-78791057 | Msa0227530:CDS | 25.0% |
| ! | CATTCCTTATATATATACAC+AGG | - | chr2_1:78791158-78791177 | None:intergenic | 25.0% |
| ! | AAAACATCAGTATACTACAA+AGG | - | chr2_1:78791342-78791361 | None:intergenic | 25.0% |
| ! | CTATGAATTATAGCATTAGT+AGG | + | chr2_1:78791486-78791505 | Msa0227530:intron | 25.0% |
| ! | TCATATTTCTTGATGTAGAA+TGG | + | chr2_1:78791544-78791563 | Msa0227530:intron | 25.0% |
| !!! | AAGAAATTTTGAAAGGAGAA+GGG | + | chr2_1:78791747-78791766 | Msa0227530:CDS | 25.0% |
| !! | GATTTTATAGATCTTATGTC+TGG | + | chr2_1:78792276-78792295 | Msa0227530:three_prime_UTR | 25.0% |
| ACTATCAATAATCTCATCTC+TGG | - | chr2_1:78789649-78789668 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTAGGGTTTTCCAC+TGG | + | chr2_1:78789811-78789830 | Msa0227530:intron | 30.0% |
| !!! | TTTTTTTAGGGTTTTCCACT+GGG | + | chr2_1:78789812-78789831 | Msa0227530:intron | 30.0% |
| TGCTATTATGTGAGAATGAA+TGG | + | chr2_1:78789903-78789922 | Msa0227530:intron | 30.0% | |
| !!! | GAGAATGAATGGATTGTTTT+CGG | + | chr2_1:78789914-78789933 | Msa0227530:intron | 30.0% |
| ! | TCTGAATTTGATGTGGTTTT+AGG | + | chr2_1:78790025-78790044 | Msa0227530:intron | 30.0% |
| !!! | TAGGTCTATGTTAGTTTTTG+GGG | + | chr2_1:78790044-78790063 | Msa0227530:intron | 30.0% |
| ATTCTGTGAGAATGAATGTT+TGG | + | chr2_1:78790274-78790293 | Msa0227530:intron | 30.0% | |
| !!! | GTTTGGATAAGCATCTTTTT+TGG | + | chr2_1:78790379-78790398 | Msa0227530:intron | 30.0% |
| !! | AAAGTTTTGTGAGACTGTTT+GGG | - | chr2_1:78790630-78790649 | None:intergenic | 30.0% |
| !! | AAAAGTTTTGTGAGACTGTT+TGG | - | chr2_1:78790631-78790650 | None:intergenic | 30.0% |
| ! | CAAAACTTTTGTCAGTAGTT+AGG | + | chr2_1:78790641-78790660 | Msa0227530:intron | 30.0% |
| ! | TTGAATGAATGGTTGTCTTT+TGG | + | chr2_1:78790744-78790763 | Msa0227530:intron | 30.0% |
| AATGAATATAATTAGAGGCC+AGG | - | chr2_1:78791100-78791119 | None:intergenic | 30.0% | |
| GTCTCCTGTGTATATATATA+AGG | + | chr2_1:78791151-78791170 | Msa0227530:intron | 30.0% | |
| TAACCTTTGTGGTATACTAA+GGG | + | chr2_1:78791363-78791382 | Msa0227530:intron | 30.0% | |
| GTATAGTAACAGATGACAAT+TGG | - | chr2_1:78791418-78791437 | None:intergenic | 30.0% | |
| TGTCATCTGTTACTATACTT+TGG | + | chr2_1:78791420-78791439 | Msa0227530:intron | 30.0% | |
| TGAATTATAGCATTAGTAGG+TGG | + | chr2_1:78791489-78791508 | Msa0227530:intron | 30.0% | |
| GAATTATAGCATTAGTAGGT+GGG | + | chr2_1:78791490-78791509 | Msa0227530:intron | 30.0% | |
| AATTATAGCATTAGTAGGTG+GGG | + | chr2_1:78791491-78791510 | Msa0227530:intron | 30.0% | |
| ! | ACAGGTCAAGAAATTTTGAA+AGG | + | chr2_1:78791740-78791759 | Msa0227530:CDS | 30.0% |
| !! | CAAGAAATTTTGAAAGGAGA+AGG | + | chr2_1:78791746-78791765 | Msa0227530:CDS | 30.0% |
| ! | ATGATCCAGACAAATTCTTT+TGG | + | chr2_1:78792188-78792207 | Msa0227530:three_prime_UTR | 30.0% |
| TCAATAATCTCATCTCTGGT+AGG | - | chr2_1:78789645-78789664 | None:intergenic | 35.0% | |
| !!! | AGGTCTATGTTAGTTTTTGG+GGG | + | chr2_1:78790045-78790064 | Msa0227530:intron | 35.0% |
| TAATGCACAACAAACAGAAC+AGG | - | chr2_1:78790074-78790093 | None:intergenic | 35.0% | |
| !!! | AAAGTGATTTTGGCTCTGTT+TGG | + | chr2_1:78790362-78790381 | Msa0227530:intron | 35.0% |
| !!! | GCATCTTTTTTGGATCTGTT+TGG | + | chr2_1:78790389-78790408 | Msa0227530:intron | 35.0% |
| TTTACAGCTTATAGCACAAG+TGG | + | chr2_1:78790424-78790443 | Msa0227530:intron | 35.0% | |
| TTTACAGTGAAGAAGAAGCT+AGG | + | chr2_1:78790809-78790828 | Msa0227530:intron | 35.0% | |
| ! | ACTAGACACTACTTTGCTTT+TGG | + | chr2_1:78790853-78790872 | Msa0227530:CDS | 35.0% |
| AATGTGAAGGAGCAAGATTA+TGG | + | chr2_1:78791051-78791070 | Msa0227530:CDS | 35.0% | |
| !! | TTGAAGTGTTGCTTATACAG+AGG | + | chr2_1:78791294-78791313 | Msa0227530:intron | 35.0% |
| !! | TGAAGTGTTGCTTATACAGA+GGG | + | chr2_1:78791295-78791314 | Msa0227530:intron | 35.0% |
| ! | CTGATGTTTTGTAACCTTTG+TGG | + | chr2_1:78791352-78791371 | Msa0227530:intron | 35.0% |
| GTAACCTTTGTGGTATACTA+AGG | + | chr2_1:78791362-78791381 | Msa0227530:intron | 35.0% | |
| ! | ATTGGTAAAATGACTAGCCA+CGG | - | chr2_1:78791400-78791419 | None:intergenic | 35.0% |
| ATTATAGCATTAGTAGGTGG+GGG | + | chr2_1:78791492-78791511 | Msa0227530:intron | 35.0% | |
| !!! | TTTTTTGTTTCCCTCTCACT+AGG | + | chr2_1:78791598-78791617 | Msa0227530:intron | 35.0% |
| TCATGATACTTGGGATCATA+TGG | - | chr2_1:78791652-78791671 | None:intergenic | 35.0% | |
| ATATGATCCCAAGTATCATG+AGG | + | chr2_1:78791651-78791670 | Msa0227530:CDS | 35.0% | |
| TGCTCCTCAAAATAACTATC+CGG | + | chr2_1:78792062-78792081 | Msa0227530:CDS | 35.0% | |
| TTATTTGACCATCCAGCATT+TGG | - | chr2_1:78792120-78792139 | None:intergenic | 35.0% | |
| ATTGGCCAAAAGAATTTGTC+TGG | - | chr2_1:78792196-78792215 | None:intergenic | 35.0% | |
| CGCAAATTCATTAGGAAGAA+GGG | - | chr2_1:78792305-78792324 | None:intergenic | 35.0% | |
| ACGCAAATTCATTAGGAAGA+AGG | - | chr2_1:78792306-78792325 | None:intergenic | 35.0% | |
| TCCTAATGAATTTGCGTTTC+AGG | + | chr2_1:78792309-78792328 | Msa0227530:three_prime_UTR | 35.0% | |
| ACCTGAAACGCAAATTCATT+AGG | - | chr2_1:78792313-78792332 | None:intergenic | 35.0% | |
| GAAGAGAAGAGAGTGAGATT+GGG | - | chr2_1:78789286-78789305 | None:intergenic | 40.0% | |
| TGAAGAGAAGAGAGTGAGAT+TGG | - | chr2_1:78789287-78789306 | None:intergenic | 40.0% | |
| AGCAAAATCGTTTCCTTTGG+TGG | - | chr2_1:78789567-78789586 | None:intergenic | 40.0% | |
| TCGAGCAAAATCGTTTCCTT+TGG | - | chr2_1:78789570-78789589 | None:intergenic | 40.0% | |
| ! | AAGGAAACGATTTTGCTCGA+TGG | + | chr2_1:78789570-78789589 | Msa0227530:CDS | 40.0% |
| ! | ATGGATGCGATTTTGAACAC+TGG | + | chr2_1:78789589-78789608 | Msa0227530:CDS | 40.0% |
| TTACATCAAAACCTTCGCTG+AGG | + | chr2_1:78789668-78789687 | Msa0227530:CDS | 40.0% | |
| AAAACCTTCGCTGAGGTTAT+TGG | + | chr2_1:78789675-78789694 | Msa0227530:CDS | 40.0% | |
| AAAGAATTTCCTTCACCCAG+TGG | - | chr2_1:78789830-78789849 | None:intergenic | 40.0% | |
| GCTGTTGTCATAAGCTATCT+TGG | + | chr2_1:78790537-78790556 | Msa0227530:intron | 40.0% | |
| GAAGGCTGTGTTTGAATGAA+TGG | + | chr2_1:78790733-78790752 | Msa0227530:intron | 40.0% | |
| GAGCTTTCCTACAAACTCAA+AGG | + | chr2_1:78790892-78790911 | Msa0227530:CDS | 40.0% | |
| AATACCCACAGCAAAGTCTT+GGG | - | chr2_1:78791257-78791276 | None:intergenic | 40.0% | |
| !! | GAAGTGTTGCTTATACAGAG+GGG | + | chr2_1:78791296-78791315 | Msa0227530:intron | 40.0% |
| !! | AAGTGTTGCTTATACAGAGG+GGG | + | chr2_1:78791297-78791316 | Msa0227530:intron | 40.0% |
| CAACCCTTAGTATACCACAA+AGG | - | chr2_1:78791369-78791388 | None:intergenic | 40.0% | |
| ! | TTGGTAAAATGACTAGCCAC+GGG | - | chr2_1:78791399-78791418 | None:intergenic | 40.0% |
| ACTGCTTGCCCATTAATGAA+GGG | - | chr2_1:78791628-78791647 | None:intergenic | 40.0% | |
| AACTGCTTGCCCATTAATGA+AGG | - | chr2_1:78791629-78791648 | None:intergenic | 40.0% | |
| ACAATGCTCGTGCTAATGAA+AGG | + | chr2_1:78791686-78791705 | Msa0227530:CDS | 40.0% | |
| TGAAAGGAGAAGGGAAAATG+TGG | + | chr2_1:78791756-78791775 | Msa0227530:CDS | 40.0% | |
| GCTCCTCAAAATAACTATCC+GGG | + | chr2_1:78792063-78792082 | Msa0227530:CDS | 40.0% | |
| CTCCTCAAAATAACTATCCG+GGG | + | chr2_1:78792064-78792083 | Msa0227530:CDS | 40.0% | |
| AACAAAACCAGAACATGGCA+GGG | + | chr2_1:78792088-78792107 | Msa0227530:CDS | 40.0% | |
| ! | TGGTTAGGGTTAGGGTTTTG+GGG | - | chr2_1:78789350-78789369 | None:intergenic | 45.0% |
| ! | GTGGTTAGGGTTAGGGTTTT+GGG | - | chr2_1:78789351-78789370 | None:intergenic | 45.0% |
| AAAGAGAGAGCGGAGGATAA+GGG | - | chr2_1:78789411-78789430 | None:intergenic | 45.0% | |
| GTTAGGGTTAGGATCGTTGA+GGG | - | chr2_1:78789532-78789551 | None:intergenic | 45.0% | |
| AGTTAGGGTTAGGATCGTTG+AGG | - | chr2_1:78789533-78789552 | None:intergenic | 45.0% | |
| TCAACGATCCTAACCCTAAC+TGG | + | chr2_1:78789532-78789551 | Msa0227530:CDS | 45.0% | |
| CAACGATCCTAACCCTAACT+GGG | + | chr2_1:78789533-78789552 | Msa0227530:CDS | 45.0% | |
| !!! | CGATTTTGAACACTGGCTTG+TGG | + | chr2_1:78789596-78789615 | Msa0227530:CDS | 45.0% |
| GTGAAGGAGCAAGATTATGG+AGG | + | chr2_1:78791054-78791073 | Msa0227530:CDS | 45.0% | |
| ATAATTAGAGGCCAGGTGAC+AGG | - | chr2_1:78791093-78791112 | None:intergenic | 45.0% | |
| AGATACCCAAGACTTTGCTG+TGG | + | chr2_1:78791249-78791268 | Msa0227530:intron | 45.0% | |
| ! | GATACCCAAGACTTTGCTGT+GGG | + | chr2_1:78791250-78791269 | Msa0227530:intron | 45.0% |
| GAATACCCACAGCAAAGTCT+TGG | - | chr2_1:78791258-78791277 | None:intergenic | 45.0% | |
| !! | AGTGTTGCTTATACAGAGGG+GGG | + | chr2_1:78791298-78791317 | Msa0227530:intron | 45.0% |
| TAGGCGAGCCCTTCATTAAT+GGG | + | chr2_1:78791617-78791636 | Msa0227530:intron | 45.0% | |
| ATCCCAAGTATCATGAGGAG+TGG | + | chr2_1:78791656-78791675 | Msa0227530:CDS | 45.0% | |
| TCCCAAGTATCATGAGGAGT+GGG | + | chr2_1:78791657-78791676 | Msa0227530:CDS | 45.0% | |
| ACCCACTCCTCATGATACTT+GGG | - | chr2_1:78791661-78791680 | None:intergenic | 45.0% | |
| AACCCACTCCTCATGATACT+TGG | - | chr2_1:78791662-78791681 | None:intergenic | 45.0% | |
| CTCGTGCTAATGAAAGGAAC+AGG | + | chr2_1:78791692-78791711 | Msa0227530:CDS | 45.0% | |
| AAAGGAACAGGCGCAATGAT+AGG | + | chr2_1:78791704-78791723 | Msa0227530:CDS | 45.0% | |
| ATAGGCCTCGTAATAACGAC+AGG | + | chr2_1:78791722-78791741 | Msa0227530:CDS | 45.0% | |
| CTTGACCTGTCGTTATTACG+AGG | - | chr2_1:78791730-78791749 | None:intergenic | 45.0% | |
| TGAACCGAGACATGCAAAGT+AGG | + | chr2_1:78791779-78791798 | Msa0227530:CDS | 45.0% | |
| ! | TTGGGAGGGTAAGCATTGTT+TGG | - | chr2_1:78791832-78791851 | None:intergenic | 45.0% |
| GGATATGCACCTCCAAATCA+AGG | + | chr2_1:78791910-78791929 | Msa0227530:CDS | 45.0% | |
| TATGCACCTCCAAATCAAGG+CGG | + | chr2_1:78791913-78791932 | Msa0227530:CDS | 45.0% | |
| !! | TGCCCCGGATAGTTATTTTG+AGG | - | chr2_1:78792069-78792088 | None:intergenic | 45.0% |
| !!! | ATGTTCTGGTTTTGTTGCCC+CGG | - | chr2_1:78792084-78792103 | None:intergenic | 45.0% |
| CAACAAAACCAGAACATGGC+AGG | + | chr2_1:78792087-78792106 | Msa0227530:CDS | 45.0% | |
| TTTGACCATCCAGCATTTGG+AGG | - | chr2_1:78792117-78792136 | None:intergenic | 45.0% | |
| AAGCAGTGTCTCTTCCAAAC+AGG | - | chr2_1:78792158-78792177 | None:intergenic | 45.0% | |
| !!! | TAAAAAAGTAAATTTAATTT+TGG | - | chr2_1:78789744-78789763 | None:intergenic | 5.0% |
| !!! | TATAAAAAATGTTTTTTTTT+TGG | + | chr2_1:78789870-78789889 | Msa0227530:intron | 5.0% |
| TCTCTTCACACACACTGCGA+TGG | + | chr2_1:78789299-78789318 | Msa0227530:exon | 50.0% | |
| ! | GGTGGTTAGGGTTAGGGTTT+TGG | - | chr2_1:78789352-78789371 | None:intergenic | 50.0% |
| GAGGAAGGTGGTTAGGGTTA+GGG | - | chr2_1:78789358-78789377 | None:intergenic | 50.0% | |
| AGAGGAAGGTGGTTAGGGTT+AGG | - | chr2_1:78789359-78789378 | None:intergenic | 50.0% | |
| GAAAGAGAGAGCGGAGGATA+AGG | - | chr2_1:78789412-78789431 | None:intergenic | 50.0% | |
| GTTAGGATCGTTGAGGGAAG+AGG | - | chr2_1:78789526-78789545 | None:intergenic | 50.0% | |
| ! | CGTTTCCTTTGGTGGACGAT+TGG | - | chr2_1:78789559-78789578 | None:intergenic | 50.0% |
| !! | TGAACACTGGCTTGTGGTTG+TGG | + | chr2_1:78789602-78789621 | Msa0227530:CDS | 50.0% |
| TCTCTGGTAGGATCACCTTC+AGG | - | chr2_1:78789633-78789652 | None:intergenic | 50.0% | |
| CCTTCCAATAACCTCAGCGA+AGG | - | chr2_1:78789682-78789701 | None:intergenic | 50.0% | |
| CCTTCGCTGAGGTTATTGGA+AGG | + | chr2_1:78789679-78789698 | Msa0227530:CDS | 50.0% | |
| ! | TAGGGTTTTCCACTGGGTGA+AGG | + | chr2_1:78789818-78789837 | Msa0227530:intron | 50.0% |
| TCCAATTGCAGAACTGCCCA+AGG | + | chr2_1:78790999-78791018 | Msa0227530:intron | 50.0% | |
| ACCTTGGGCAGTTCTGCAAT+TGG | - | chr2_1:78791003-78791022 | None:intergenic | 50.0% | |
| AGAACTGCCCAAGGTTCGAT+GGG | + | chr2_1:78791008-78791027 | Msa0227530:intron | 50.0% | |
| GGAAGAACCCATCGAACCTT+GGG | - | chr2_1:78791018-78791037 | None:intergenic | 50.0% | |
| AGGAAGAACCCATCGAACCT+TGG | - | chr2_1:78791019-78791038 | None:intergenic | 50.0% | |
| CTTATACAGAGGGGGGTGAA+TGG | + | chr2_1:78791305-78791324 | Msa0227530:intron | 50.0% | |
| TAAGGGTTGAAGTTCACCCG+TGG | + | chr2_1:78791380-78791399 | Msa0227530:intron | 50.0% | |
| CTAGGCGAGCCCTTCATTAA+TGG | + | chr2_1:78791616-78791635 | Msa0227530:intron | 50.0% | |
| GAGGCCTACTTTGCATGTCT+CGG | - | chr2_1:78791786-78791805 | None:intergenic | 50.0% | |
| ! | GGGTAAGCATTGTTTGGAGG+TGG | - | chr2_1:78791826-78791845 | None:intergenic | 50.0% |
| ! | GGAGGGTAAGCATTGTTTGG+AGG | - | chr2_1:78791829-78791848 | None:intergenic | 50.0% |
| TTACCCTCCCAACAATGCTG+CGG | + | chr2_1:78791840-78791859 | Msa0227530:CDS | 50.0% | |
| ATCCACCAGCATTGTTGGGA+GGG | - | chr2_1:78791870-78791889 | None:intergenic | 50.0% | |
| TATCCACCAGCATTGTTGGG+AGG | - | chr2_1:78791871-78791890 | None:intergenic | 50.0% | |
| GGGTATCCACCAGCATTGTT+GGG | - | chr2_1:78791874-78791893 | None:intergenic | 50.0% | |
| ! | AGGGTATCCACCAGCATTGT+TGG | - | chr2_1:78791875-78791894 | None:intergenic | 50.0% |
| GCATATCCGCCTTGGTTGTT+GGG | - | chr2_1:78791898-78791917 | None:intergenic | 50.0% | |
| TGCATATCCGCCTTGGTTGT+TGG | - | chr2_1:78791899-78791918 | None:intergenic | 50.0% | |
| !! | GTATCCGCCTTGATTTGGAG+GGG | - | chr2_1:78791920-78791939 | None:intergenic | 50.0% |
| !! | CGTATCCGCCTTGATTTGGA+GGG | - | chr2_1:78791921-78791940 | None:intergenic | 50.0% |
| !! | ATCCACCGCCTTGATTTGGA+GGG | - | chr2_1:78791969-78791988 | None:intergenic | 50.0% |
| !! | TATCCACCGCCTTGATTTGG+AGG | - | chr2_1:78791970-78791989 | None:intergenic | 50.0% |
| ! | GGAGCACCATATCCACTGTT+GGG | - | chr2_1:78792048-78792067 | None:intergenic | 50.0% |
| !! | AGGAGCACCATATCCACTGT+TGG | - | chr2_1:78792049-78792068 | None:intergenic | 50.0% |
| GGGGCAACAAAACCAGAACA+TGG | + | chr2_1:78792083-78792102 | Msa0227530:CDS | 50.0% | |
| CAGTAGACTCCTGACCTGTT+TGG | + | chr2_1:78792141-78792160 | Msa0227530:exon | 50.0% | |
| GTGTCTCTTCCAAACAGGTC+AGG | - | chr2_1:78792153-78792172 | None:intergenic | 50.0% | |
| GCGAGAGAGGAAGGTGGTTA+GGG | - | chr2_1:78789364-78789383 | None:intergenic | 55.0% | |
| AGCGAGAGAGGAAGGTGGTT+AGG | - | chr2_1:78789365-78789384 | None:intergenic | 55.0% | |
| ! | AGTGGTGGTTGTGGTGGAGA+TGG | - | chr2_1:78789388-78789407 | None:intergenic | 55.0% |
| TAAGGGAGTGGTGGTTGTGG+TGG | - | chr2_1:78789394-78789413 | None:intergenic | 55.0% | |
| GGATAAGGGAGTGGTGGTTG+TGG | - | chr2_1:78789397-78789416 | None:intergenic | 55.0% | |
| AGGAAGGGAGGAGGATGTGA+CGG | - | chr2_1:78789476-78789495 | None:intergenic | 55.0% | |
| ! | TGGAGAAAGCGCGGAAGGAA+GGG | - | chr2_1:78789491-78789510 | None:intergenic | 55.0% |
| CGTTGAGGGAAGAGGTGGTA+GGG | - | chr2_1:78789518-78789537 | None:intergenic | 55.0% | |
| TCGTTGAGGGAAGAGGTGGT+AGG | - | chr2_1:78789519-78789538 | None:intergenic | 55.0% | |
| AGGATCGTTGAGGGAAGAGG+TGG | - | chr2_1:78789523-78789542 | None:intergenic | 55.0% | |
| ! | CGATTGGCCCAGTTAGGGTT+AGG | - | chr2_1:78789543-78789562 | None:intergenic | 55.0% |
| ! | GTGGACGATTGGCCCAGTTA+GGG | - | chr2_1:78789548-78789567 | None:intergenic | 55.0% |
| GTGGTTGTGGAGAAGCCTGA+AGG | + | chr2_1:78789615-78789634 | Msa0227530:CDS | 55.0% | |
| CAGAACTGCCCAAGGTTCGA+TGG | + | chr2_1:78791007-78791026 | Msa0227530:intron | 55.0% | |
| AGGCCTCCAGTGCAGAATTC+TGG | + | chr2_1:78791799-78791818 | Msa0227530:CDS | 55.0% | |
| GGACCAGAATTCTGCACTGG+AGG | - | chr2_1:78791805-78791824 | None:intergenic | 55.0% | |
| GGTGGACCAGAATTCTGCAC+TGG | - | chr2_1:78791808-78791827 | None:intergenic | 55.0% | |
| TACCCTCCCAACAATGCTGC+GGG | + | chr2_1:78791841-78791860 | Msa0227530:CDS | 55.0% | |
| ATCCCGCAGCATTGTTGGGA+GGG | - | chr2_1:78791846-78791865 | None:intergenic | 55.0% | |
| TATCCCGCAGCATTGTTGGG+AGG | - | chr2_1:78791847-78791866 | None:intergenic | 55.0% | |
| GGGTATCCCGCAGCATTGTT+GGG | - | chr2_1:78791850-78791869 | None:intergenic | 55.0% | |
| ! | AGGGTATCCCGCAGCATTGT+TGG | - | chr2_1:78791851-78791870 | None:intergenic | 55.0% |
| GGATACCCTCCCAACAATGC+TGG | + | chr2_1:78791862-78791881 | Msa0227530:CDS | 55.0% | |
| TACCCTCCCAACAATGCTGG+TGG | + | chr2_1:78791865-78791884 | Msa0227530:CDS | 55.0% | |
| GGATACCCTCCCAACAACCA+AGG | + | chr2_1:78791886-78791905 | Msa0227530:CDS | 55.0% | |
| TACCCTCCCAACAACCAAGG+CGG | + | chr2_1:78791889-78791908 | Msa0227530:CDS | 55.0% | |
| ATCCGCCTTGGTTGTTGGGA+GGG | - | chr2_1:78791894-78791913 | None:intergenic | 55.0% | |
| TATCCGCCTTGGTTGTTGGG+AGG | - | chr2_1:78791895-78791914 | None:intergenic | 55.0% | |
| ! | TTGGAGGTGCATATCCGCCT+TGG | - | chr2_1:78791906-78791925 | None:intergenic | 55.0% |
| !! | GCGTATCCGCCTTGATTTGG+AGG | - | chr2_1:78791922-78791941 | None:intergenic | 55.0% |
| GGATACGCCCCTCCAAATCA+AGG | + | chr2_1:78791934-78791953 | Msa0227530:CDS | 55.0% | |
| TACGCCCCTCCAAATCAAGG+CGG | + | chr2_1:78791937-78791956 | Msa0227530:CDS | 55.0% | |
| !! | GCGTATCCGCCTTGATTTGG+AGG | - | chr2_1:78791922-78791941 | None:intergenic | 55.0% |
| GGATACGCCCCTCCAAATCA+AGG | + | chr2_1:78791934-78791953 | Msa0227530:CDS | 55.0% | |
| TACGCCCCTCCAAATCAAGG+CGG | + | chr2_1:78791937-78791956 | Msa0227530:CDS | 55.0% | |
| !! | TCCACCGCCTTGATTTGGAG+GGG | - | chr2_1:78791968-78791987 | None:intergenic | 55.0% |
| GGGTATCCACCGCCTTGATT+TGG | - | chr2_1:78791973-78791992 | None:intergenic | 55.0% | |
| TATCCACTGTTGGGAGGAGG+AGG | - | chr2_1:78792039-78792058 | None:intergenic | 55.0% | |
| CCATATCCACTGTTGGGAGG+AGG | - | chr2_1:78792042-78792061 | None:intergenic | 55.0% | |
| CCTCCTCCCAACAGTGGATA+TGG | + | chr2_1:78792039-78792058 | Msa0227530:CDS | 55.0% | |
| GCACCATATCCACTGTTGGG+AGG | - | chr2_1:78792045-78792064 | None:intergenic | 55.0% | |
| GGATGCCTCCAAATGCTGGA+TGG | + | chr2_1:78792109-78792128 | Msa0227530:CDS | 55.0% | |
| GATGGAGCGAGAGAGGAAGG+TGG | - | chr2_1:78789370-78789389 | None:intergenic | 60.0% | |
| GGAGATGGAGCGAGAGAGGA+AGG | - | chr2_1:78789373-78789392 | None:intergenic | 60.0% | |
| TGGTGGAGATGGAGCGAGAG+AGG | - | chr2_1:78789377-78789396 | None:intergenic | 60.0% | |
| AGCGGAGGATAAGGGAGTGG+TGG | - | chr2_1:78789403-78789422 | None:intergenic | 60.0% | |
| GAGAGCGGAGGATAAGGGAG+TGG | - | chr2_1:78789406-78789425 | None:intergenic | 60.0% | |
| ACGGCGGAGGAAAGAGAGAG+CGG | - | chr2_1:78789421-78789440 | None:intergenic | 60.0% | |
| ! | GATGTGACGGGAGGTGATGG+CGG | - | chr2_1:78789463-78789482 | None:intergenic | 60.0% |
| ! | GAGGATGTGACGGGAGGTGA+TGG | - | chr2_1:78789466-78789485 | None:intergenic | 60.0% |
| GGAAGGGAGGAGGATGTGAC+GGG | - | chr2_1:78789475-78789494 | None:intergenic | 60.0% | |
| ! | AGAAAGCGCGGAAGGAAGGG+AGG | - | chr2_1:78789488-78789507 | None:intergenic | 60.0% |
| ! | GTGGAGAAAGCGCGGAAGGA+AGG | - | chr2_1:78789492-78789511 | None:intergenic | 60.0% |
| TAGGGCGAGTGGAGAAAGCG+CGG | - | chr2_1:78789500-78789519 | None:intergenic | 60.0% | |
| ! | GGTGGACGATTGGCCCAGTT+AGG | - | chr2_1:78789549-78789568 | None:intergenic | 60.0% |
| CTGGGCCAATCGTCCACCAA+AGG | + | chr2_1:78789551-78789570 | Msa0227530:CDS | 60.0% | |
| AGCTCTGCTGTCCTGTCACC+TGG | + | chr2_1:78791079-78791098 | Msa0227530:intron | 60.0% | |
| TACAGAGGGGGGTGAATGGC+TGG | + | chr2_1:78791309-78791328 | Msa0227530:intron | 60.0% | |
| GAAGGGCTCGCCTAGTGAGA+GGG | - | chr2_1:78791611-78791630 | None:intergenic | 60.0% | |
| TGAAGGGCTCGCCTAGTGAG+AGG | - | chr2_1:78791612-78791631 | None:intergenic | 60.0% | |
| GGGGCGTATCCGCCTTGATT+TGG | - | chr2_1:78791925-78791944 | None:intergenic | 60.0% | |
| GGGGCGTATCCGCCTTGATT+TGG | - | chr2_1:78791925-78791944 | None:intergenic | 60.0% | |
| TACCCTCCCCCCAACATGAG+CGG | + | chr2_1:78791988-78792007 | Msa0227530:CDS | 60.0% | |
| AGGAGGTCCGCTCATGTTGG+GGG | - | chr2_1:78791998-78792017 | None:intergenic | 60.0% | |
| GAGGAGGTCCGCTCATGTTG+GGG | - | chr2_1:78791999-78792018 | None:intergenic | 60.0% | |
| GGAGGAGGTCCGCTCATGTT+GGG | - | chr2_1:78792000-78792019 | None:intergenic | 60.0% | |
| AGGAGGAGGTCCGCTCATGT+TGG | - | chr2_1:78792001-78792020 | None:intergenic | 60.0% | |
| CGGCTCATGTTAGGAGGAGG+AGG | - | chr2_1:78792015-78792034 | None:intergenic | 60.0% | |
| ! | GGTCGGCTCATGTTAGGAGG+AGG | - | chr2_1:78792018-78792037 | None:intergenic | 60.0% |
| ! | GGAGGTCGGCTCATGTTAGG+AGG | - | chr2_1:78792021-78792040 | None:intergenic | 60.0% |
| ! | GGAGGAGGTCGGCTCATGTT+AGG | - | chr2_1:78792024-78792043 | None:intergenic | 60.0% |
| CACTGTTGGGAGGAGGAGGT+CGG | - | chr2_1:78792035-78792054 | None:intergenic | 60.0% | |
| ! | GAGGCATCCCTGCCATGTTC+TGG | - | chr2_1:78792098-78792117 | None:intergenic | 60.0% |
| GCAGGGATGCCTCCAAATGC+TGG | + | chr2_1:78792105-78792124 | Msa0227530:CDS | 60.0% | |
| GCGGAGGAAAGAGAGAGCGG+AGG | - | chr2_1:78789418-78789437 | None:intergenic | 65.0% | |
| AAAGAGGACGGAGACGGCGG+AGG | - | chr2_1:78789434-78789453 | None:intergenic | 65.0% | |
| CGGAAAGAGGACGGAGACGG+CGG | - | chr2_1:78789437-78789456 | None:intergenic | 65.0% | |
| CGGCGGAAAGAGGACGGAGA+CGG | - | chr2_1:78789440-78789459 | None:intergenic | 65.0% | |
| ! | AGGGAGGAGGATGTGACGGG+AGG | - | chr2_1:78789472-78789491 | None:intergenic | 65.0% |
| AAGCGCGGAAGGAAGGGAGG+AGG | - | chr2_1:78789485-78789504 | None:intergenic | 65.0% | |
| ! | GCGAGTGGAGAAAGCGCGGA+AGG | - | chr2_1:78789496-78789515 | None:intergenic | 65.0% |
| GGAAGAGGTGGTAGGGCGAG+TGG | - | chr2_1:78789511-78789530 | None:intergenic | 65.0% | |
| GCCCCTCCAAATCAAGGCGG+TGG | + | chr2_1:78791940-78791959 | Msa0227530:CDS | 65.0% | |
| GTCCGCTCATGTTGGGGGGA+GGG | - | chr2_1:78791993-78792012 | None:intergenic | 65.0% | |
| GGAGGTCCGCTCATGTTGGG+GGG | - | chr2_1:78791997-78792016 | None:intergenic | 65.0% | |
| CGACCTCCTCCTCCCAACAG+TGG | + | chr2_1:78792033-78792052 | Msa0227530:CDS | 65.0% | |
| TGGCGGCGGCGGAAAGAGGA+CGG | - | chr2_1:78789446-78789465 | None:intergenic | 70.0% | |
| !! | GTGATGGCGGCGGCGGAAAG+AGG | - | chr2_1:78789450-78789469 | None:intergenic | 70.0% |
| !! | GTGACGGGAGGTGATGGCGG+CGG | - | chr2_1:78789460-78789479 | None:intergenic | 70.0% |
| GGTCCGCTCATGTTGGGGGG+AGG | - | chr2_1:78791994-78792013 | None:intergenic | 70.0% | |
| !! | ACGGGAGGTGATGGCGGCGG+CGG | - | chr2_1:78789457-78789476 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 78789252 | 78792471 | 78789252 | ID=Msa0227530;Name=Msa0227530 |
| chr2_1 | mRNA | 78789252 | 78792471 | 78789252 | ID=Msa0227530-mRNA-1;Parent=Msa0227530;Name=Msa0227530-mRNA-1;_AED=0.20;_eAED=0.20;_QI=66|1|1|1|1|1|4|325|357 |
| chr2_1 | exon | 78789252 | 78789700 | 78789252 | ID=Msa0227530-mRNA-1:exon:23972;Parent=Msa0227530-mRNA-1 |
| chr2_1 | exon | 78790816 | 78790913 | 78790816 | ID=Msa0227530-mRNA-1:exon:23973;Parent=Msa0227530-mRNA-1 |
| chr2_1 | exon | 78791010 | 78791075 | 78791010 | ID=Msa0227530-mRNA-1:exon:23974;Parent=Msa0227530-mRNA-1 |
| chr2_1 | exon | 78791620 | 78792471 | 78791620 | ID=Msa0227530-mRNA-1:exon:23975;Parent=Msa0227530-mRNA-1 |
| chr2_1 | five_prime_UTR | 78789252 | 78789317 | 78789252 | ID=Msa0227530-mRNA-1:five_prime_utr;Parent=Msa0227530-mRNA-1 |
| chr2_1 | CDS | 78789318 | 78789700 | 78789318 | ID=Msa0227530-mRNA-1:cds;Parent=Msa0227530-mRNA-1 |
| chr2_1 | CDS | 78790816 | 78790913 | 78790816 | ID=Msa0227530-mRNA-1:cds;Parent=Msa0227530-mRNA-1 |
| chr2_1 | CDS | 78791010 | 78791075 | 78791010 | ID=Msa0227530-mRNA-1:cds;Parent=Msa0227530-mRNA-1 |
| chr2_1 | CDS | 78791620 | 78792146 | 78791620 | ID=Msa0227530-mRNA-1:cds;Parent=Msa0227530-mRNA-1 |
| chr2_1 | three_prime_UTR | 78792147 | 78792471 | 78792147 | ID=Msa0227530-mRNA-1:three_prime_utr;Parent=Msa0227530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
