Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228850 | XP_003621577.1 | 94.236 | 347 | 14 | 2 | 1 | 341 | 1 | 347 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228850 | sp|Q9CAA4|BIM2_ARATH | 38.710 | 310 | 155 | 8 | 3 | 305 | 2 | 283 | 3.93e-49 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228850 | G7KRZ1 | 94.236 | 347 | 14 | 2 | 1 | 341 | 1 | 347 | 0.0 | 599 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0228850 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0228850 | Msa1051110 | 0.993427 | 1.172450e-199 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228850 | MtrunA17_Chr7g0220371 | 94.236 | 347 | 14 | 2 | 1 | 341 | 1 | 347 | 0.0 | 599 |
| Msa0228850 | MtrunA17_Chr5g0420701 | 40.323 | 310 | 149 | 8 | 46 | 337 | 41 | 332 | 2.68e-57 | 189 |
| Msa0228850 | MtrunA17_Chr4g0061791 | 38.630 | 365 | 180 | 15 | 1 | 337 | 218 | 566 | 1.36e-51 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228850 | AT1G69010.1 | 38.710 | 310 | 155 | 8 | 3 | 305 | 2 | 283 | 4.00e-50 | 170 |
| Msa0228850 | AT5G38860.1 | 36.964 | 303 | 152 | 8 | 44 | 338 | 27 | 298 | 1.77e-46 | 160 |
| Msa0228850 | AT5G08130.3 | 36.721 | 305 | 147 | 10 | 1 | 293 | 103 | 373 | 2.82e-37 | 138 |
| Msa0228850 | AT5G08130.1 | 36.393 | 305 | 149 | 10 | 1 | 293 | 103 | 374 | 8.27e-37 | 137 |
| Msa0228850 | AT5G08130.5 | 36.601 | 306 | 148 | 10 | 1 | 294 | 227 | 498 | 2.12e-36 | 138 |
| Msa0228850 | AT5G08130.7 | 36.601 | 306 | 148 | 10 | 1 | 294 | 223 | 494 | 2.16e-36 | 138 |
| Msa0228850 | AT5G08130.2 | 36.275 | 306 | 150 | 10 | 1 | 294 | 223 | 495 | 5.01e-36 | 137 |
| Msa0228850 | AT5G08130.4 | 36.275 | 306 | 150 | 10 | 1 | 294 | 223 | 495 | 5.01e-36 | 137 |
| Msa0228850 | AT5G08130.8 | 36.275 | 306 | 150 | 10 | 1 | 294 | 227 | 499 | 6.19e-36 | 137 |
| Msa0228850 | AT5G08130.6 | 36.275 | 306 | 150 | 10 | 1 | 294 | 223 | 495 | 7.40e-36 | 136 |
| Msa0228850 | AT5G38860.2 | 42.328 | 189 | 94 | 4 | 44 | 217 | 27 | 215 | 2.39e-35 | 128 |
Find 92 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAATTTGTTCAAGAAAA+TGG | 0.171896 | 2_2:+186486 | Msa0228850:exon |
| AAATGTATATTTCATGATTC+TGG | 0.218307 | 2_2:+192174 | Msa0228850:three_prime_UTR |
| CCTTCTCGAGCTATTCAAAA+TGG | 0.240427 | 2_2:+188707 | Msa0228850:CDS |
| GCTTCTCTTCTGAACCTCTT+TGG | 0.254372 | 2_2:-192022 | None:intergenic |
| CAACCAATTCTTCATCTTGA+TGG | 0.291614 | 2_2:-186525 | None:intergenic |
| TTCGTGTTTAAACAGAATAT+TGG | 0.303552 | 2_2:+190734 | Msa0228850:intron |
| GTTGGTAGACGAACAAATAT+TGG | 0.308030 | 2_2:+190828 | Msa0228850:CDS |
| TGAGTATATTCATTTCTTAC+AGG | 0.317013 | 2_2:+187655 | Msa0228850:CDS |
| AACAAACCTTTGAGCTATAA+TGG | 0.339100 | 2_2:-190863 | None:intergenic |
| TGGAGGGGTCAGACACTATT+GGG | 0.346563 | 2_2:-188784 | None:intergenic |
| ACCCATGGAATTAATTTAGT+TGG | 0.355118 | 2_2:-187725 | None:intergenic |
| ACCAAGTACCTCCAACAAAA+AGG | 0.357315 | 2_2:-187534 | None:intergenic |
| GTGGAGGGGTCAGACACTAT+TGG | 0.360556 | 2_2:-188785 | None:intergenic |
| TCGTGTTTAAACAGAATATT+GGG | 0.364366 | 2_2:+190735 | Msa0228850:intron |
| TTTCCACTGCGACATTAGTC+TGG | 0.369636 | 2_2:-190800 | None:intergenic |
| ATTCAGAAGGGTTGCATCCC+TGG | 0.380134 | 2_2:+188812 | Msa0228850:CDS |
| CCAATCTCCAGCCTCAAGTA+TGG | 0.384078 | 2_2:+188960 | Msa0228850:CDS |
| ACAATATGATTGTCCTTGTT+TGG | 0.394063 | 2_2:-188992 | None:intergenic |
| AGGCCATCAAGATGAAGAAT+TGG | 0.415929 | 2_2:+186522 | Msa0228850:CDS |
| ATTCAAAATGGGTCTGTTGA+TGG | 0.420277 | 2_2:+188719 | Msa0228850:CDS |
| TCCTTATGAAGGATGGAATC+AGG | 0.425736 | 2_2:+187700 | Msa0228850:CDS |
| CCAATCGCATTTGCATGGTC+AGG | 0.430055 | 2_2:-188856 | None:intergenic |
| GAGGTTGAGCTGAGGGAAAG+AGG | 0.432735 | 2_2:+192103 | Msa0228850:three_prime_UTR |
| CCATACTTGAGGCTGGAGAT+TGG | 0.439386 | 2_2:-188960 | None:intergenic |
| ACCTGAAGATTGTAGCGCTT+GGG | 0.439567 | 2_2:-190766 | None:intergenic |
| AGGTTGAGCTGAGGGAAAGA+GGG | 0.446663 | 2_2:+192104 | Msa0228850:three_prime_UTR |
| AGCCAACTAAATTAATTCCA+TGG | 0.454176 | 2_2:+187723 | Msa0228850:CDS |
| ACCATACCACCGCTAACAAC+CGG | 0.455738 | 2_2:-188890 | None:intergenic |
| TCCTGATTCCATCCTTCATA+AGG | 0.456798 | 2_2:-187701 | None:intergenic |
| TGTTTCAGATAATACATTGA+AGG | 0.463774 | 2_2:+189012 | Msa0228850:CDS |
| CACCTGAAGATTGTAGCGCT+TGG | 0.468612 | 2_2:-190767 | None:intergenic |
| ACCCAAGCGCTACAATCTTC+AGG | 0.469010 | 2_2:+190765 | Msa0228850:CDS |
| ATTTATGAACATCCTTATGA+AGG | 0.475064 | 2_2:+187689 | Msa0228850:CDS |
| AACCTTTGAGCTATAATGGC+AGG | 0.478271 | 2_2:-190859 | None:intergenic |
| AAAGAGGGAATGGATAGGTC+AGG | 0.491712 | 2_2:+192119 | Msa0228850:three_prime_UTR |
| CTTCTCGAGCTATTCAAAAT+GGG | 0.493981 | 2_2:+188708 | Msa0228850:CDS |
| TGCTAAGCCATACTTGAGGC+TGG | 0.494117 | 2_2:-188967 | None:intergenic |
| TGAACCCATCAGAGGGAAAA+GGG | 0.494552 | 2_2:+186780 | Msa0228850:CDS |
| TGGAGATTGGAAGCCATGTC+AGG | 0.500262 | 2_2:-188947 | None:intergenic |
| ATGAACCCATCAGAGGGAAA+AGG | 0.501254 | 2_2:+186779 | Msa0228850:CDS |
| ACTACTTCTGTGGATGAACC+AGG | 0.503685 | 2_2:-188830 | None:intergenic |
| GAGGAGATGAAAATTGATAG+TGG | 0.504298 | 2_2:+189040 | Msa0228850:CDS |
| AATCAAGCAATAGCATGTTC+AGG | 0.506167 | 2_2:+191965 | Msa0228850:CDS |
| GCCATGTCAGGATTAGATAC+AGG | 0.508965 | 2_2:-188935 | None:intergenic |
| GAGCTGAGGGAAAGAGGGAA+TGG | 0.516947 | 2_2:+192109 | Msa0228850:three_prime_UTR |
| CCTGACCATGCAAATGCGAT+TGG | 0.517967 | 2_2:+188856 | Msa0228850:CDS |
| ATGAACATCCTTATGAAGGA+TGG | 0.522411 | 2_2:+187693 | Msa0228850:CDS |
| GCGATTGGACATGTTTGATC+CGG | 0.526444 | 2_2:+188871 | Msa0228850:CDS |
| GCCAACTAAATTAATTCCAT+GGG | 0.528721 | 2_2:+187724 | Msa0228850:CDS |
| TCCGGTTGTTAGCGGTGGTA+TGG | 0.531955 | 2_2:+188889 | Msa0228850:CDS |
| CAATCGCATTTGCATGGTCA+GGG | 0.532625 | 2_2:-188855 | None:intergenic |
| ATGTTTGATCCGGTTGTTAG+CGG | 0.533535 | 2_2:+188881 | Msa0228850:CDS |
| CTGAATGCTTAGAACGATGA+GGG | 0.533904 | 2_2:-186807 | None:intergenic |
| TTGTGACTTGGCAGTGAAGG+TGG | 0.535432 | 2_2:+186756 | Msa0228850:intron |
| ACCTTTGAGCTATAATGGCA+GGG | 0.551595 | 2_2:-190858 | None:intergenic |
| TCTCAAGTGCCTACTCTCAA+AGG | 0.555019 | 2_2:+189080 | Msa0228850:CDS |
| AGCAATAGCATGTTCAGGAA+TGG | 0.555359 | 2_2:+191970 | Msa0228850:CDS |
| CCCCTCCACAACTATTCAGA+AGG | 0.558361 | 2_2:+188799 | Msa0228850:CDS |
| TTCCACTGCGACATTAGTCT+GGG | 0.559741 | 2_2:-190799 | None:intergenic |
| CCCTTCTGAATAGTTGTGGA+GGG | 0.566151 | 2_2:-188800 | None:intergenic |
| AAAATGGCTAGGTCTGCTAA+AGG | 0.571124 | 2_2:+186502 | Msa0228850:exon |
| CATGTCCAATCGCATTTGCA+TGG | 0.574061 | 2_2:-188861 | None:intergenic |
| TCAAATACTTACACAAGTGA+TGG | 0.579281 | 2_2:-192268 | None:intergenic |
| CCCCTGCCATTATAGCTCAA+AGG | 0.581622 | 2_2:+190857 | Msa0228850:CDS |
| TTTGATCCGGTTGTTAGCGG+TGG | 0.584063 | 2_2:+188884 | Msa0228850:CDS |
| ACCCTTCTGAATAGTTGTGG+AGG | 0.584253 | 2_2:-188801 | None:intergenic |
| GAAGAAGTAAAATTAATGAA+AGG | 0.584856 | 2_2:+186845 | Msa0228850:CDS |
| GCAACCCTTCTGAATAGTTG+TGG | 0.585019 | 2_2:-188804 | None:intergenic |
| ATTTGTTCAAGAAAATGGCT+AGG | 0.596675 | 2_2:+186491 | Msa0228850:exon |
| CCTTTGAGCTATAATGGCAG+GGG | 0.598339 | 2_2:-190857 | None:intergenic |
| TAATACATTGAAGGAACAAG+AGG | 0.600684 | 2_2:+189021 | Msa0228850:CDS |
| AGGTGGATGAACCCATCAGA+GGG | 0.603757 | 2_2:+186773 | Msa0228850:CDS |
| AACAGAACAAAATGAACATG+AGG | 0.609065 | 2_2:-192062 | None:intergenic |
| TCTGAATGCTTAGAACGATG+AGG | 0.614104 | 2_2:-186808 | None:intergenic |
| AGAAACTCACCTTTGAGAGT+AGG | 0.618012 | 2_2:-189089 | None:intergenic |
| ATGGCTTAGCAAACCAAACA+AGG | 0.619238 | 2_2:+188979 | Msa0228850:CDS |
| GCCTGTATCTAATCCTGACA+TGG | 0.619504 | 2_2:+188934 | Msa0228850:CDS |
| GGTCAGGGGAACTACTTCTG+TGG | 0.634643 | 2_2:-188840 | None:intergenic |
| CCTTCTGAATAGTTGTGGAG+GGG | 0.636473 | 2_2:-188799 | None:intergenic |
| GGTTTGCTAAGCCATACTTG+AGG | 0.640701 | 2_2:-188971 | None:intergenic |
| GTCGCAGTGGAAATTGATGT+TGG | 0.642132 | 2_2:+190810 | Msa0228850:CDS |
| AAGGTGGATGAACCCATCAG+AGG | 0.649580 | 2_2:+186772 | Msa0228850:CDS |
| AATCGCATTTGCATGGTCAG+GGG | 0.653290 | 2_2:-188854 | None:intergenic |
| CCCTCCACAACTATTCAGAA+GGG | 0.654712 | 2_2:+188800 | Msa0228850:CDS |
| GAGGGAAAGAGGGAATGGAT+AGG | 0.654849 | 2_2:+192114 | Msa0228850:three_prime_UTR |
| TCATCTCTCAACAACAACAA+TGG | 0.655170 | 2_2:+186589 | Msa0228850:CDS |
| AGGAATGGATTACTTCAGTG+AGG | 0.664514 | 2_2:+191985 | Msa0228850:CDS |
| ATTCTGAACAAAGTCCAAAG+AGG | 0.673768 | 2_2:+192008 | Msa0228850:CDS |
| AATAGCTCGAGAAGGATCTG+TGG | 0.691231 | 2_2:-188699 | None:intergenic |
| CTTTGAGCTATAATGGCAGG+GGG | 0.694018 | 2_2:-190856 | None:intergenic |
| CTACTTCTGTGGATGAACCA+GGG | 0.695417 | 2_2:-188829 | None:intergenic |
| GTCCCAGACTAATGTCGCAG+TGG | 0.698666 | 2_2:+190797 | Msa0228850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTCTTGTAAATTAAAT+TGG | + | chr2_2:187584-187603 | Msa0228850:intron | 10.0% |
| !! | ATATTCTTGTAAATTAAATT+GGG | + | chr2_2:187585-187604 | Msa0228850:intron | 10.0% |
| !!! | CTTTTTTTTGTTTATTTAAA+AGG | + | chr2_2:190936-190955 | Msa0228850:intron | 10.0% |
| !! | TAATCATATGTAAGATTATA+TGG | + | chr2_2:187996-188015 | Msa0228850:intron | 15.0% |
| !! | AATCATATGTAAGATTATAT+GGG | + | chr2_2:187997-188016 | Msa0228850:intron | 15.0% |
| !! | TAAAAAATGTTGTCAAATAA+CGG | + | chr2_2:188134-188153 | Msa0228850:intron | 15.0% |
| !! | AAAAAAGAGTTAAAACTATT+GGG | - | chr2_2:189654-189673 | None:intergenic | 15.0% |
| !! | AAAAAAAGAGTTAAAACTAT+TGG | - | chr2_2:189655-189674 | None:intergenic | 15.0% |
| !! | CATAAATACTAACAAATTAA+AGG | - | chr2_2:190128-190147 | None:intergenic | 15.0% |
| !!! | CATATAATTTTCAAAATAAG+TGG | + | chr2_2:190615-190634 | Msa0228850:intron | 15.0% |
| !! | TTTATTATATGAGAGTTTAT+GGG | - | chr2_2:191386-191405 | None:intergenic | 15.0% |
| !!! | AGAAAATTTGTTCAAGAAAA+TGG | + | chr2_2:186486-186505 | Msa0228850:exon | 20.0% |
| !! | GAAGAAGTAAAATTAATGAA+AGG | + | chr2_2:186845-186864 | Msa0228850:CDS | 20.0% |
| !! | ATATTTAGTAATGATCTATG+TGG | + | chr2_2:186978-186997 | Msa0228850:intron | 20.0% |
| !! | ACATAATTGAATGTAATTAC+AGG | - | chr2_2:187067-187086 | None:intergenic | 20.0% |
| !!! | ATTCAATTATGTCATTTTCT+TGG | + | chr2_2:187075-187094 | Msa0228850:intron | 20.0% |
| !! | TGATTGTGTAAAATTGATTA+TGG | + | chr2_2:187142-187161 | Msa0228850:intron | 20.0% |
| !! | AAGGTAAACTTATTTATGTT+TGG | + | chr2_2:187179-187198 | Msa0228850:intron | 20.0% |
| !! | AGAATCAATTATATACTTCT+AGG | + | chr2_2:187316-187335 | Msa0228850:intron | 20.0% |
| !! | TAGTAATTTAAGTGTATGTT+TGG | - | chr2_2:187370-187389 | None:intergenic | 20.0% |
| !!! | CTTAAGATTTTACCATTTTA+TGG | + | chr2_2:188532-188551 | Msa0228850:intron | 20.0% |
| !!! | TTTTTTTAGAGAAATCATCA+CGG | + | chr2_2:188662-188681 | Msa0228850:intron | 20.0% |
| !! | CATGAAGAATAATAAAATCT+AGG | - | chr2_2:189709-189728 | None:intergenic | 20.0% |
| !! | CTTAAATTAACCATTATTCT+TGG | - | chr2_2:189990-190009 | None:intergenic | 20.0% |
| !! | TCAATAGTTAATGATTAAAG+AGG | - | chr2_2:190086-190105 | None:intergenic | 20.0% |
| !!! | ATGGGTCATATAATTATTTT+TGG | - | chr2_2:190430-190449 | None:intergenic | 20.0% |
| !! | CAAATATAAAGCTTATACAT+TGG | - | chr2_2:191045-191064 | None:intergenic | 20.0% |
| !!! | CAATGTATAAGCTTTATATT+TGG | + | chr2_2:191043-191062 | Msa0228850:intron | 20.0% |
| !!! | TAAGTACTTATGTATGTTTT+TGG | + | chr2_2:191145-191164 | Msa0228850:intron | 20.0% |
| !!! | GATACTTCATTATATGTTTT+CGG | + | chr2_2:191191-191210 | Msa0228850:intron | 20.0% |
| !!! | TGAAAATAAAATTTGAGACA+TGG | - | chr2_2:191280-191299 | None:intergenic | 20.0% |
| !! | TTCAATAAGCTATTTGTATT+TGG | - | chr2_2:191350-191369 | None:intergenic | 20.0% |
| !! | GTTTATTATATGAGAGTTTA+TGG | - | chr2_2:191387-191406 | None:intergenic | 20.0% |
| !! | CTCATAATAAACACTTAATT+AGG | + | chr2_2:191497-191516 | Msa0228850:intron | 20.0% |
| !!! | TTGGTATAAGATGATTTTTA+AGG | - | chr2_2:191905-191924 | None:intergenic | 20.0% |
| !! | AAATGTATATTTCATGATTC+TGG | + | chr2_2:192174-192193 | Msa0228850:three_prime_UTR | 20.0% |
| !!! | AGCTTATTATAACTTTTGTT+TGG | + | chr2_2:192235-192254 | Msa0228850:three_prime_UTR | 20.0% |
| ! | ATTCATGATTCCTTGATTAA+TGG | + | chr2_2:186655-186674 | Msa0228850:intron | 25.0% |
| ! | TTCATGATTCCTTGATTAAT+GGG | + | chr2_2:186656-186675 | Msa0228850:intron | 25.0% |
| !! | TCATTTTCTTGGTATATGTT+TGG | + | chr2_2:187086-187105 | Msa0228850:intron | 25.0% |
| !! | TCTCTTTTTGAATCATTTTC+AGG | - | chr2_2:187506-187525 | None:intergenic | 25.0% |
| ! | TGAGTATATTCATTTCTTAC+AGG | + | chr2_2:187655-187674 | Msa0228850:CDS | 25.0% |
| ! | ATTTATGAACATCCTTATGA+AGG | + | chr2_2:187689-187708 | Msa0228850:CDS | 25.0% |
| ! | AATGAGTAATTCACTTTACA+GGG | - | chr2_2:187966-187985 | None:intergenic | 25.0% |
| ! | AAATGAGTAATTCACTTTAC+AGG | - | chr2_2:187967-187986 | None:intergenic | 25.0% |
| !!! | GACAACATTTTTTAGATATG+AGG | - | chr2_2:188128-188147 | None:intergenic | 25.0% |
| !!! | ACAAGATCAAATTTTAGAAC+AGG | - | chr2_2:188318-188337 | None:intergenic | 25.0% |
| !!! | TGTACATTTTTAGGAAATGA+CGG | - | chr2_2:188761-188780 | None:intergenic | 25.0% |
| ! | TGTTTCAGATAATACATTGA+AGG | + | chr2_2:189012-189031 | Msa0228850:CDS | 25.0% |
| ! | CATACATTTAACATGAAATC+AGG | - | chr2_2:189142-189161 | None:intergenic | 25.0% |
| ! | AAGTCATTCAATCATAATGT+TGG | + | chr2_2:189284-189303 | Msa0228850:intron | 25.0% |
| ! | ATTCAATCATAATGTTGGAT+TGG | + | chr2_2:189289-189308 | Msa0228850:intron | 25.0% |
| ! | TAAAACTATTGGGTATTTGA+TGG | - | chr2_2:189644-189663 | None:intergenic | 25.0% |
| !!! | CTCTTTTTTTAAGCGTATAT+AGG | + | chr2_2:189665-189684 | Msa0228850:intron | 25.0% |
| ! | AAACAACAGATTAAAAACAC+AGG | - | chr2_2:190154-190173 | None:intergenic | 25.0% |
| ! | AACAAAGCTGTATGTATTAT+TGG | + | chr2_2:190247-190266 | Msa0228850:intron | 25.0% |
| ! | TATTACTTAAATCTGACAGA+AGG | + | chr2_2:190281-190300 | Msa0228850:intron | 25.0% |
| ! | TTATAATTGTGCATGAGATT+CGG | + | chr2_2:190479-190498 | Msa0228850:intron | 25.0% |
| ! | TTGACATAAGAAAATGTTCA+AGG | + | chr2_2:190526-190545 | Msa0228850:intron | 25.0% |
| ! | TGACATAAGAAAATGTTCAA+GGG | + | chr2_2:190527-190546 | Msa0228850:intron | 25.0% |
| ! | TTCGTGTTTAAACAGAATAT+TGG | + | chr2_2:190734-190753 | Msa0228850:intron | 25.0% |
| ! | TCGTGTTTAAACAGAATATT+GGG | + | chr2_2:190735-190754 | Msa0228850:intron | 25.0% |
| !!! | CGTTATTTTTCTTCATTCTA+TGG | + | chr2_2:190890-190909 | Msa0228850:intron | 25.0% |
| ! | AACAATGAATAAACTTTGCA+GGG | - | chr2_2:190916-190935 | None:intergenic | 25.0% |
| ! | AAACACAAATAAACTCAACA+AGG | - | chr2_2:191114-191133 | None:intergenic | 25.0% |
| ! | ACATAAGTACTTATATAGTG+TGG | - | chr2_2:191138-191157 | None:intergenic | 25.0% |
| ! | TTGATCAGTTATATTGTTGT+TGG | + | chr2_2:191640-191659 | Msa0228850:intron | 25.0% |
| !! | ACTCTGCAACAATAAAATTT+TGG | - | chr2_2:191924-191943 | None:intergenic | 25.0% |
| !!! | GACATTTTAGAATAAACGTT+TGG | + | chr2_2:192209-192228 | Msa0228850:three_prime_UTR | 25.0% |
| ATTTGTTCAAGAAAATGGCT+AGG | + | chr2_2:186491-186510 | Msa0228850:exon | 30.0% | |
| ! | TTGAGAGATGAAGATGTTTT+TGG | - | chr2_2:186580-186599 | None:intergenic | 30.0% |
| AGGAATCATGAATCATTGTT+GGG | - | chr2_2:186648-186667 | None:intergenic | 30.0% | |
| AAGGAATCATGAATCATTGT+TGG | - | chr2_2:186649-186668 | None:intergenic | 30.0% | |
| TTTGATACACCCATTAATCA+AGG | - | chr2_2:186668-186687 | None:intergenic | 30.0% | |
| ATTGCAGAGCACAATTAAAA+TGG | - | chr2_2:186705-186724 | None:intergenic | 30.0% | |
| !!! | GCAATTTTTTTGTTGTGACT+TGG | + | chr2_2:186744-186763 | Msa0228850:intron | 30.0% |
| TATGGCTAAAAGTGAGTTAA+AGG | + | chr2_2:187160-187179 | Msa0228850:intron | 30.0% | |
| ATATTTGTGTGACAGATTTC+AGG | + | chr2_2:187463-187482 | Msa0228850:intron | 30.0% | |
| ! | AGATAAAGCTTCCTTTTTGT+TGG | + | chr2_2:187523-187542 | Msa0228850:CDS | 30.0% |
| TGCACATAAGACAAAAACAA+AGG | - | chr2_2:187629-187648 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTGTCTTATGTGC+AGG | + | chr2_2:187628-187647 | Msa0228850:intron | 30.0% |
| AGCCAACTAAATTAATTCCA+TGG | + | chr2_2:187723-187742 | Msa0228850:CDS | 30.0% | |
| GCCAACTAAATTAATTCCAT+GGG | + | chr2_2:187724-187743 | Msa0228850:CDS | 30.0% | |
| ACCCATGGAATTAATTTAGT+TGG | - | chr2_2:187728-187747 | None:intergenic | 30.0% | |
| ATTCCATGGGTAAAGTTATT+TGG | + | chr2_2:187737-187756 | Msa0228850:intron | 30.0% | |
| ATTCCAAATAACTTTACCCA+TGG | - | chr2_2:187743-187762 | None:intergenic | 30.0% | |
| ! | TCCATTGCTTTATTCATCAA+CGG | - | chr2_2:187852-187871 | None:intergenic | 30.0% |
| GCAACAAATTATGAATGCAT+TGG | + | chr2_2:187891-187910 | Msa0228850:intron | 30.0% | |
| ! | ACCGTTGATTGATTAGTATA+TGG | + | chr2_2:187921-187940 | Msa0228850:intron | 30.0% |
| CCCATATACTAATCAATCAA+CGG | - | chr2_2:187925-187944 | None:intergenic | 30.0% | |
| ! | CCGTTGATTGATTAGTATAT+GGG | + | chr2_2:187922-187941 | Msa0228850:intron | 30.0% |
| !!! | CTACTGTTATTTTGTGATAC+AGG | + | chr2_2:188189-188208 | Msa0228850:intron | 30.0% |
| GTTTCTTCTGCATTTAAATC+AGG | - | chr2_2:188437-188456 | None:intergenic | 30.0% | |
| TTATGCACTTGACATACAAT+CGG | - | chr2_2:188479-188498 | None:intergenic | 30.0% | |
| TTGTGAGAACTATATCATTG+AGG | - | chr2_2:188568-188587 | None:intergenic | 30.0% | |
| ! | ATTGGGTTCTGTACATTTTT+AGG | - | chr2_2:188770-188789 | None:intergenic | 30.0% |
| ACAATATGATTGTCCTTGTT+TGG | - | chr2_2:188995-189014 | None:intergenic | 30.0% | |
| TAATACATTGAAGGAACAAG+AGG | + | chr2_2:189021-189040 | Msa0228850:CDS | 30.0% | |
| ! | CACATTTTGTGTGTTACAAA+AGG | + | chr2_2:189190-189209 | Msa0228850:intron | 30.0% |
| CAATAGAGAACATAGACATA+CGG | - | chr2_2:189458-189477 | None:intergenic | 30.0% | |
| ATCTGCAATTAGGATTTAAC+TGG | + | chr2_2:189612-189631 | Msa0228850:intron | 30.0% | |
| TAACCATTATTCTTGGATGT+TGG | - | chr2_2:189983-190002 | None:intergenic | 30.0% | |
| ! | TTGTTTAGTCTTCGTAATAG+CGG | + | chr2_2:190168-190187 | Msa0228850:intron | 30.0% |
| CTGTATGTATTATTGGTGTA+AGG | + | chr2_2:190254-190273 | Msa0228850:intron | 30.0% | |
| ! | ACTACTCTTTGCAATTTGTT+AGG | + | chr2_2:190390-190409 | Msa0228850:intron | 30.0% |
| ! | CTCTAATAATTTTGTCGGAT+GGG | - | chr2_2:190448-190467 | None:intergenic | 30.0% |
| ! | ACTCTAATAATTTTGTCGGA+TGG | - | chr2_2:190449-190468 | None:intergenic | 30.0% |
| ! | TGGCACTCTAATAATTTTGT+CGG | - | chr2_2:190453-190472 | None:intergenic | 30.0% |
| ! | AAAATTATTAGAGTGCCACT+TGG | + | chr2_2:190455-190474 | Msa0228850:intron | 30.0% |
| ATGCACAATTATAAACCAAG+TGG | - | chr2_2:190473-190492 | None:intergenic | 30.0% | |
| GTGTTGAAGAATTAATTTCC+TGG | - | chr2_2:190657-190676 | None:intergenic | 30.0% | |
| AACAAACCTTTGAGCTATAA+TGG | - | chr2_2:190866-190885 | None:intergenic | 30.0% | |
| GAACAATGAATAAACTTTGC+AGG | - | chr2_2:190917-190936 | None:intergenic | 30.0% | |
| TCATCTAATTTGATCTCTTC+AGG | - | chr2_2:190974-190993 | None:intergenic | 30.0% | |
| AGAGATCAAATTAGATGATC+TGG | + | chr2_2:190976-190995 | Msa0228850:intron | 30.0% | |
| TATTTGGACAGAGTCAATTT+AGG | + | chr2_2:191059-191078 | Msa0228850:intron | 30.0% | |
| !!! | ACCTTTTTCAAGATAGCATA+TGG | + | chr2_2:191225-191244 | Msa0228850:intron | 30.0% |
| !!! | CCTTTTTCAAGATAGCATAT+GGG | + | chr2_2:191226-191245 | Msa0228850:intron | 30.0% |
| !! | TTTTAAAAACTGAGCTGAAC+CGG | + | chr2_2:191572-191591 | Msa0228850:intron | 30.0% |
| TCAACCAATTTAACTGGAAA+CGG | + | chr2_2:191600-191619 | Msa0228850:intron | 30.0% | |
| TGATCAAAGCAACTGTAAAA+TGG | - | chr2_2:191627-191646 | None:intergenic | 30.0% | |
| ! | ATATTGTTGTTGGATTGAAC+CGG | + | chr2_2:191650-191669 | Msa0228850:intron | 30.0% |
| AGGAGAAATGAAACAATATG+AGG | - | chr2_2:191885-191904 | None:intergenic | 30.0% | |
| AACAGAACAAAATGAACATG+AGG | - | chr2_2:192065-192084 | None:intergenic | 30.0% | |
| !!! | ATGATTCTGGTTTTGAAACA+AGG | + | chr2_2:192187-192206 | Msa0228850:three_prime_UTR | 30.0% |
| TCAAATACTTACACAAGTGA+TGG | - | chr2_2:192271-192290 | None:intergenic | 30.0% | |
| CAACCAATTCTTCATCTTGA+TGG | - | chr2_2:186528-186547 | None:intergenic | 35.0% | |
| TCATCTCTCAACAACAACAA+TGG | + | chr2_2:186589-186608 | Msa0228850:CDS | 35.0% | |
| TATTGTAGAGAGAGAAAAGG+AGG | - | chr2_2:186625-186644 | None:intergenic | 35.0% | |
| GCTTGAAGTAGAATCAATTC+TGG | + | chr2_2:187257-187276 | Msa0228850:intron | 35.0% | |
| ! | TGTTTGGTTTCACATCTAGA+GGG | - | chr2_2:187354-187373 | None:intergenic | 35.0% |
| ! | ATGTTTGGTTTCACATCTAG+AGG | - | chr2_2:187355-187374 | None:intergenic | 35.0% |
| ! | TAAAGCTTCCTTTTTGTTGG+AGG | + | chr2_2:187526-187545 | Msa0228850:CDS | 35.0% |
| ATGAACATCCTTATGAAGGA+TGG | + | chr2_2:187693-187712 | Msa0228850:CDS | 35.0% | |
| ! | ACCGTTGATGAATAAAGCAA+TGG | + | chr2_2:187848-187867 | Msa0228850:intron | 35.0% |
| TTGTCAAATAACGGCTATAG+TGG | + | chr2_2:188143-188162 | Msa0228850:intron | 35.0% | |
| GTTATAGCATTGTAGCGTAT+CGG | + | chr2_2:188249-188268 | Msa0228850:intron | 35.0% | |
| !!! | TTTTAGAACAGGTTTGTCGA+TGG | - | chr2_2:188307-188326 | None:intergenic | 35.0% |
| TATGCACTTGACATACAATC+GGG | - | chr2_2:188478-188497 | None:intergenic | 35.0% | |
| ! | GTTCAAGAATTCAAGTTCAG+TGG | + | chr2_2:188507-188526 | Msa0228850:intron | 35.0% |
| GGTTGCTAAATGCCATAAAA+TGG | - | chr2_2:188547-188566 | None:intergenic | 35.0% | |
| AAGCCTTGAAATAATAGCAC+TGG | + | chr2_2:188605-188624 | Msa0228850:intron | 35.0% | |
| ! | AGAAGGATCTGTGGTATTTT+CGG | - | chr2_2:188693-188712 | None:intergenic | 35.0% |
| CTTCTCGAGCTATTCAAAAT+GGG | + | chr2_2:188708-188727 | Msa0228850:CDS | 35.0% | |
| ATTCAAAATGGGTCTGTTGA+TGG | + | chr2_2:188719-188738 | Msa0228850:CDS | 35.0% | |
| GAGGAGATGAAAATTGATAG+TGG | + | chr2_2:189040-189059 | Msa0228850:CDS | 35.0% | |
| GCTATAGCATTGTAACATTG+TGG | + | chr2_2:189382-189401 | Msa0228850:intron | 35.0% | |
| TATACCAATGTTGTCAATCG+CGG | - | chr2_2:189435-189454 | None:intergenic | 35.0% | |
| ACGCAATAAGGATGTGATAA+AGG | - | chr2_2:189575-189594 | None:intergenic | 35.0% | |
| TGGAGAAACAGAAGAAACAT+GGG | - | chr2_2:189876-189895 | None:intergenic | 35.0% | |
| AAACTCAAAGATCAGAGCAA+AGG | - | chr2_2:189924-189943 | None:intergenic | 35.0% | |
| ACACCAACATCCAAGAATAA+TGG | + | chr2_2:189977-189996 | Msa0228850:intron | 35.0% | |
| AATGGTTAATTTAAGCCGAC+TGG | + | chr2_2:189995-190014 | Msa0228850:intron | 35.0% | |
| TTGGGAATGGAATTCTTTGA+AGG | + | chr2_2:190036-190055 | Msa0228850:intron | 35.0% | |
| ! | TTGTTGTTAGTCCCAAATAG+TGG | - | chr2_2:190232-190251 | None:intergenic | 35.0% |
| CAAAGCATATGAATGTGGAA+TGG | - | chr2_2:190337-190356 | None:intergenic | 35.0% | |
| ATCGACAAAGCATATGAATG+TGG | - | chr2_2:190342-190361 | None:intergenic | 35.0% | |
| ! | AGATTCGGTTCTTGGAAAAA+AGG | + | chr2_2:190494-190513 | Msa0228850:intron | 35.0% |
| TCAACTGCAATAAGACATTC+TGG | - | chr2_2:190559-190578 | None:intergenic | 35.0% | |
| TGTCAATATATGATGCTGAC+TGG | + | chr2_2:190710-190729 | Msa0228850:intron | 35.0% | |
| ! | GTTGGTAGACGAACAAATAT+TGG | + | chr2_2:190828-190847 | Msa0228850:CDS | 35.0% |
| GTTACCAGAATGCGTTAAAA+AGG | + | chr2_2:191000-191019 | Msa0228850:intron | 35.0% | |
| ! | TCATCCTTTTTAACGCATTC+TGG | - | chr2_2:191007-191026 | None:intergenic | 35.0% |
| GAATGCGTTAAAAAGGATGA+AGG | + | chr2_2:191007-191026 | Msa0228850:intron | 35.0% | |
| ! | AGAGTCAATTTAGGACTAGT+GGG | + | chr2_2:191068-191087 | Msa0228850:intron | 35.0% |
| CCCATATGCTATCTTGAAAA+AGG | - | chr2_2:191229-191248 | None:intergenic | 35.0% | |
| TGAGACATGGAAAACAATGA+GGG | - | chr2_2:191267-191286 | None:intergenic | 35.0% | |
| TTGAGACATGGAAAACAATG+AGG | - | chr2_2:191268-191287 | None:intergenic | 35.0% | |
| ! | AGATAACGGCGACATATTTA+GGG | - | chr2_2:191539-191558 | None:intergenic | 35.0% |
| ACATTGAGCTGAACAGATAA+CGG | - | chr2_2:191553-191572 | None:intergenic | 35.0% | |
| TCCAGTTAAATTGGTTGAAC+CGG | - | chr2_2:191598-191617 | None:intergenic | 35.0% | |
| CAACCAATTTAACTGGAAAC+GGG | + | chr2_2:191601-191620 | Msa0228850:intron | 35.0% | |
| ! | TATTGTTGTTGGATTGAACC+GGG | + | chr2_2:191651-191670 | Msa0228850:intron | 35.0% |
| ! | TAAACTGCAGTTGGTTCAAT+CGG | + | chr2_2:191685-191704 | Msa0228850:intron | 35.0% |
| ! | TGGTTCAATTGGTTTAACCA+CGG | - | chr2_2:191791-191810 | None:intergenic | 35.0% |
| ! | CATAGTTCAACTGGTTCAAT+TGG | - | chr2_2:191802-191821 | None:intergenic | 35.0% |
| !! | TGGTTCTAAGGATGCAAAAT+TGG | + | chr2_2:191854-191873 | Msa0228850:intron | 35.0% |
| AATCAAGCAATAGCATGTTC+AGG | + | chr2_2:191965-191984 | Msa0228850:CDS | 35.0% | |
| ATTCTGAACAAAGTCCAAAG+AGG | + | chr2_2:192008-192027 | Msa0228850:CDS | 35.0% | |
| !!! | TATTTTTTGAGGTTGAGCTG+AGG | + | chr2_2:192095-192114 | Msa0228850:three_prime_UTR | 35.0% |
| !!! | ATTTTTTGAGGTTGAGCTGA+GGG | + | chr2_2:192096-192115 | Msa0228850:three_prime_UTR | 35.0% |
| AAAATGGCTAGGTCTGCTAA+AGG | + | chr2_2:186502-186521 | Msa0228850:exon | 40.0% | |
| AGGCCATCAAGATGAAGAAT+TGG | + | chr2_2:186522-186541 | Msa0228850:CDS | 40.0% | |
| ! | GGGTATTGTAGAGAGAGAAA+AGG | - | chr2_2:186628-186647 | None:intergenic | 40.0% |
| CTGAATGCTTAGAACGATGA+GGG | - | chr2_2:186810-186829 | None:intergenic | 40.0% | |
| TCTGAATGCTTAGAACGATG+AGG | - | chr2_2:186811-186830 | None:intergenic | 40.0% | |
| ! | GGTTCTGCGTTGACAAAAAT+TGG | + | chr2_2:187107-187126 | Msa0228850:intron | 40.0% |
| ! | GTTTGGTTTCACATCTAGAG+GGG | - | chr2_2:187353-187372 | None:intergenic | 40.0% |
| TGTGCTTCATAGGTGATGAT+TGG | + | chr2_2:187424-187443 | Msa0228850:intron | 40.0% | |
| !!! | TCCTTTTTGTTGGAGGTACT+TGG | + | chr2_2:187533-187552 | Msa0228850:intron | 40.0% |
| ACCAAGTACCTCCAACAAAA+AGG | - | chr2_2:187537-187556 | None:intergenic | 40.0% | |
| TCCTTATGAAGGATGGAATC+AGG | + | chr2_2:187700-187719 | Msa0228850:CDS | 40.0% | |
| TCCTGATTCCATCCTTCATA+AGG | - | chr2_2:187704-187723 | None:intergenic | 40.0% | |
| ATACTTCTACGGTCATGCAT+TGG | - | chr2_2:187796-187815 | None:intergenic | 40.0% | |
| ! | ACCGTAGAAGTATGCATTTG+TGG | + | chr2_2:187803-187822 | Msa0228850:intron | 40.0% |
| CCCACAAATGCATACTTCTA+CGG | - | chr2_2:187807-187826 | None:intergenic | 40.0% | |
| ! | CCGTAGAAGTATGCATTTGT+GGG | + | chr2_2:187804-187823 | Msa0228850:intron | 40.0% |
| CTCCTATAAGAGGAACTGTT+CGG | + | chr2_2:188087-188106 | Msa0228850:intron | 40.0% | |
| ATCCGAACAGTTCCTCTTAT+AGG | - | chr2_2:188092-188111 | None:intergenic | 40.0% | |
| ATGCACTTGACATACAATCG+GGG | - | chr2_2:188477-188496 | None:intergenic | 40.0% | |
| ! | GAGCCAGTGCTATTATTTCA+AGG | - | chr2_2:188611-188630 | None:intergenic | 40.0% |
| ! | CCATTTTGAATAGCTCGAGA+AGG | - | chr2_2:188710-188729 | None:intergenic | 40.0% |
| CCTTCTCGAGCTATTCAAAA+TGG | + | chr2_2:188707-188726 | Msa0228850:CDS | 40.0% | |
| ATGTTTGATCCGGTTGTTAG+CGG | + | chr2_2:188881-188900 | Msa0228850:CDS | 40.0% | |
| ATGGCTTAGCAAACCAAACA+AGG | + | chr2_2:188979-188998 | Msa0228850:CDS | 40.0% | |
| ! | AGAAACTCACCTTTGAGAGT+AGG | - | chr2_2:189092-189111 | None:intergenic | 40.0% |
| ! | TGTGATAAAGGCGCAATTTG+CGG | - | chr2_2:189563-189582 | None:intergenic | 40.0% |
| AATCCTAATTGCAGATGTGC+AGG | - | chr2_2:189608-189627 | None:intergenic | 40.0% | |
| TGGAAGAATGAGAATGGGAA+TGG | - | chr2_2:189804-189823 | None:intergenic | 40.0% | |
| GTGGAGAAACAGAAGAAACA+TGG | - | chr2_2:189877-189896 | None:intergenic | 40.0% | |
| AAAAACCAGAGGAGTAGTAG+TGG | - | chr2_2:189896-189915 | None:intergenic | 40.0% | |
| !!! | ACTACTACTCCTCTGGTTTT+TGG | + | chr2_2:189895-189914 | Msa0228850:intron | 40.0% |
| ! | TGAGTTTTCTGCGAGAACAA+TGG | + | chr2_2:189937-189956 | Msa0228850:intron | 40.0% |
| GCTATCCGCTATAGAAGTTT+CGG | + | chr2_2:190190-190209 | Msa0228850:intron | 40.0% | |
| CTATCCGCTATAGAAGTTTC+GGG | + | chr2_2:190191-190210 | Msa0228850:intron | 40.0% | |
| TATCCGCTATAGAAGTTTCG+GGG | + | chr2_2:190192-190211 | Msa0228850:intron | 40.0% | |
| AAACCCCGAAACTTCTATAG+CGG | - | chr2_2:190198-190217 | None:intergenic | 40.0% | |
| AGTAGTTGACAAGACTCAAG+CGG | - | chr2_2:190376-190395 | None:intergenic | 40.0% | |
| ! | GGTGCAACAATACATTTTCC+AGG | + | chr2_2:190636-190655 | Msa0228850:intron | 40.0% |
| ACCTTTGAGCTATAATGGCA+GGG | - | chr2_2:190861-190880 | None:intergenic | 40.0% | |
| AACCTTTGAGCTATAATGGC+AGG | - | chr2_2:190862-190881 | None:intergenic | 40.0% | |
| ! | CAGAGTCAATTTAGGACTAG+TGG | + | chr2_2:191067-191086 | Msa0228850:intron | 40.0% |
| ! | AATTTAGGACTAGTGGGTGA+TGG | + | chr2_2:191074-191093 | Msa0228850:intron | 40.0% |
| ! | GATAACGGCGACATATTTAG+GGG | - | chr2_2:191538-191557 | None:intergenic | 40.0% |
| ! | CAGATAACGGCGACATATTT+AGG | - | chr2_2:191540-191559 | None:intergenic | 40.0% |
| ! | ATTGTTGTTGGATTGAACCG+GGG | + | chr2_2:191652-191671 | Msa0228850:intron | 40.0% |
| TGAAGCAGTTAAACTGCAGT+TGG | + | chr2_2:191676-191695 | Msa0228850:intron | 40.0% | |
| ! | TTTGTCATCTAGTTCAACCG+TGG | + | chr2_2:191771-191790 | Msa0228850:intron | 40.0% |
| ! | CTTTCGAGTCATAGTTCAAC+TGG | - | chr2_2:191811-191830 | None:intergenic | 40.0% |
| CTAAGGATGCAAAATTGGCA+TGG | + | chr2_2:191859-191878 | Msa0228850:intron | 40.0% | |
| AGCAATAGCATGTTCAGGAA+TGG | + | chr2_2:191970-191989 | Msa0228850:CDS | 40.0% | |
| !! | AGGAATGGATTACTTCAGTG+AGG | + | chr2_2:191985-192004 | Msa0228850:CDS | 40.0% |
| ! | TTGTTGTGACTTGGCAGTGA+AGG | + | chr2_2:186753-186772 | Msa0228850:intron | 45.0% |
| ATGAACCCATCAGAGGGAAA+AGG | + | chr2_2:186779-186798 | Msa0228850:CDS | 45.0% | |
| TGAACCCATCAGAGGGAAAA+GGG | + | chr2_2:186780-186799 | Msa0228850:CDS | 45.0% | |
| ! | TTAGCCCTTTTCCCTCTGAT+GGG | - | chr2_2:186787-186806 | None:intergenic | 45.0% |
| AAGCCTTCTATCCGAAGTGT+CGG | - | chr2_2:187006-187025 | None:intergenic | 45.0% | |
| CATAGACACATGTCAGACAC+CGG | - | chr2_2:187031-187050 | None:intergenic | 45.0% | |
| CGACGTGTTAGTGTTGTGTT+CGG | + | chr2_2:187397-187416 | Msa0228850:intron | 45.0% | |
| !! | GTTCGGTGTTTGTGCTTCAT+AGG | + | chr2_2:187414-187433 | Msa0228850:intron | 45.0% |
| AGCTCCTGTAAGCTAGAATC+CGG | + | chr2_2:188055-188074 | Msa0228850:intron | 45.0% | |
| ! | CTTATAGGAGCAAGTTGAGC+CGG | - | chr2_2:188077-188096 | None:intergenic | 45.0% |
| ! | GCTCAACTTGCTCCTATAAG+AGG | + | chr2_2:188077-188096 | Msa0228850:intron | 45.0% |
| ! | ACAATCGGGGTTAGTGTTGT+TGG | - | chr2_2:188464-188483 | None:intergenic | 45.0% |
| ! | GGATCTGTGGTATTTTCGGA+AGG | - | chr2_2:188689-188708 | None:intergenic | 45.0% |
| AATAGCTCGAGAAGGATCTG+TGG | - | chr2_2:188702-188721 | None:intergenic | 45.0% | |
| CCTTCTGAATAGTTGTGGAG+GGG | - | chr2_2:188802-188821 | None:intergenic | 45.0% | |
| CCCTTCTGAATAGTTGTGGA+GGG | - | chr2_2:188803-188822 | None:intergenic | 45.0% | |
| CCCTCCACAACTATTCAGAA+GGG | + | chr2_2:188800-188819 | Msa0228850:CDS | 45.0% | |
| ACCCTTCTGAATAGTTGTGG+AGG | - | chr2_2:188804-188823 | None:intergenic | 45.0% | |
| GCAACCCTTCTGAATAGTTG+TGG | - | chr2_2:188807-188826 | None:intergenic | 45.0% | |
| CTACTTCTGTGGATGAACCA+GGG | - | chr2_2:188832-188851 | None:intergenic | 45.0% | |
| ACTACTTCTGTGGATGAACC+AGG | - | chr2_2:188833-188852 | None:intergenic | 45.0% | |
| AATCGCATTTGCATGGTCAG+GGG | - | chr2_2:188857-188876 | None:intergenic | 45.0% | |
| CAATCGCATTTGCATGGTCA+GGG | - | chr2_2:188858-188877 | None:intergenic | 45.0% | |
| CATGTCCAATCGCATTTGCA+TGG | - | chr2_2:188864-188883 | None:intergenic | 45.0% | |
| GCGATTGGACATGTTTGATC+CGG | + | chr2_2:188871-188890 | Msa0228850:CDS | 45.0% | |
| GCCTGTATCTAATCCTGACA+TGG | + | chr2_2:188934-188953 | Msa0228850:CDS | 45.0% | |
| GCCATGTCAGGATTAGATAC+AGG | - | chr2_2:188938-188957 | None:intergenic | 45.0% | |
| !! | GGTTTGCTAAGCCATACTTG+AGG | - | chr2_2:188974-188993 | None:intergenic | 45.0% |
| TCTCAAGTGCCTACTCTCAA+AGG | + | chr2_2:189080-189099 | Msa0228850:CDS | 45.0% | |
| TGCGGTATACAACTACGAAG+AGG | - | chr2_2:189346-189365 | None:intergenic | 45.0% | |
| ACCGCAGTGTTGTCAAATAG+AGG | + | chr2_2:189360-189379 | Msa0228850:intron | 45.0% | |
| GCCTCTATTTGACAACACTG+CGG | - | chr2_2:189364-189383 | None:intergenic | 45.0% | |
| TGATCCGCGATTGACAACAT+TGG | + | chr2_2:189428-189447 | Msa0228850:intron | 45.0% | |
| AGCACACTATCACAGATTCG+AGG | + | chr2_2:189487-189506 | Msa0228850:intron | 45.0% | |
| AAGAAGAGTCGCACGAATCA+GGG | - | chr2_2:189771-189790 | None:intergenic | 45.0% | |
| GCACGTGGAAGAATGAGAAT+GGG | - | chr2_2:189809-189828 | None:intergenic | 45.0% | |
| TGCACGTGGAAGAATGAGAA+TGG | - | chr2_2:189810-189829 | None:intergenic | 45.0% | |
| TTCCACGTGCAAACTGTGAA+GGG | + | chr2_2:189819-189838 | Msa0228850:intron | 45.0% | |
| TCAGTTCGCAGGAAGAAGAA+TGG | - | chr2_2:189848-189867 | None:intergenic | 45.0% | |
| TTTCTCCACTACTACTCCTC+TGG | + | chr2_2:189888-189907 | Msa0228850:intron | 45.0% | |
| CAAAGGAAGCCAAAAACCAG+AGG | - | chr2_2:189907-189926 | None:intergenic | 45.0% | |
| AACAATGGCATCCTCCTCAT+CGG | + | chr2_2:189952-189971 | Msa0228850:intron | 45.0% | |
| ACTTCAAGGTTGTCACCAGT+CGG | - | chr2_2:190013-190032 | None:intergenic | 45.0% | |
| TGACAACCTTGAAGTGGCTT+GGG | + | chr2_2:190018-190037 | Msa0228850:intron | 45.0% | |
| TGTCACTCTACGCCACTATT+TGG | + | chr2_2:190217-190236 | Msa0228850:intron | 45.0% | |
| GTCACTCTACGCCACTATTT+GGG | + | chr2_2:190218-190237 | Msa0228850:intron | 45.0% | |
| CAAGACTCAAGCGGGTAAAA+TGG | - | chr2_2:190367-190386 | None:intergenic | 45.0% | |
| GTAGTTGACAAGACTCAAGC+GGG | - | chr2_2:190375-190394 | None:intergenic | 45.0% | |
| ! | TGTGCATGAGATTCGGTTCT+TGG | + | chr2_2:190486-190505 | Msa0228850:intron | 45.0% |
| ACCTGAAGATTGTAGCGCTT+GGG | - | chr2_2:190769-190788 | None:intergenic | 45.0% | |
| ! | TTCCACTGCGACATTAGTCT+GGG | - | chr2_2:190802-190821 | None:intergenic | 45.0% |
| TTTCCACTGCGACATTAGTC+TGG | - | chr2_2:190803-190822 | None:intergenic | 45.0% | |
| GTCGCAGTGGAAATTGATGT+TGG | + | chr2_2:190810-190829 | Msa0228850:CDS | 45.0% | |
| CTTTGAGCTATAATGGCAGG+GGG | - | chr2_2:190859-190878 | None:intergenic | 45.0% | |
| CCTTTGAGCTATAATGGCAG+GGG | - | chr2_2:190860-190879 | None:intergenic | 45.0% | |
| !! | GCGACATATTTAGGGGTGTT+TGG | - | chr2_2:191531-191550 | None:intergenic | 45.0% |
| GTTAAATTGGTTGAACCGGC+CGG | - | chr2_2:191594-191613 | None:intergenic | 45.0% | |
| ! | GCCGGTTCAACCAATTTAAC+TGG | + | chr2_2:191594-191613 | Msa0228850:intron | 45.0% |
| TGGCCCGTTTCCAGTTAAAT+TGG | - | chr2_2:191607-191626 | None:intergenic | 45.0% | |
| CAGTTTAACTGCTTCAACCC+CGG | - | chr2_2:191672-191691 | None:intergenic | 45.0% | |
| CTATGACTCGAAAGTCTCAC+CGG | + | chr2_2:191817-191836 | Msa0228850:intron | 45.0% | |
| AACCAGAGTGAAGATCGAAC+CGG | - | chr2_2:191839-191858 | None:intergenic | 45.0% | |
| !! | CGATCTTCACTCTGGTTCTA+AGG | + | chr2_2:191842-191861 | Msa0228850:intron | 45.0% |
| GCTTCTCTTCTGAACCTCTT+TGG | - | chr2_2:192025-192044 | None:intergenic | 45.0% | |
| AAAGAGGGAATGGATAGGTC+AGG | + | chr2_2:192119-192138 | Msa0228850:three_prime_UTR | 45.0% | |
| !!! | TTAAATATTATTATTTTTTG+AGG | + | chr2_2:192084-192103 | Msa0228850:three_prime_UTR | 5.0% |
| ! | TTGTGACTTGGCAGTGAAGG+TGG | + | chr2_2:186756-186775 | Msa0228850:intron | 50.0% |
| AAGGTGGATGAACCCATCAG+AGG | + | chr2_2:186772-186791 | Msa0228850:CDS | 50.0% | |
| AGGTGGATGAACCCATCAGA+GGG | + | chr2_2:186773-186792 | Msa0228850:CDS | 50.0% | |
| ! | GTTAGCCCTTTTCCCTCTGA+TGG | - | chr2_2:186788-186807 | None:intergenic | 50.0% |
| !! | TCTATGTGGCACCGACACTT+CGG | + | chr2_2:186992-187011 | Msa0228850:intron | 50.0% |
| CTTCGGATAGAAGGCTTGTC+CGG | + | chr2_2:187009-187028 | Msa0228850:intron | 50.0% | |
| !! | TGAGCCGGATTCTAGCTTAC+AGG | - | chr2_2:188062-188081 | None:intergenic | 50.0% |
| TGGAGGGGTCAGACACTATT+GGG | - | chr2_2:188787-188806 | None:intergenic | 50.0% | |
| CCCCTCCACAACTATTCAGA+AGG | + | chr2_2:188799-188818 | Msa0228850:CDS | 50.0% | |
| ATTCAGAAGGGTTGCATCCC+TGG | + | chr2_2:188812-188831 | Msa0228850:CDS | 50.0% | |
| CCAATCGCATTTGCATGGTC+AGG | - | chr2_2:188859-188878 | None:intergenic | 50.0% | |
| CCTGACCATGCAAATGCGAT+TGG | + | chr2_2:188856-188875 | Msa0228850:CDS | 50.0% | |
| TTTGATCCGGTTGTTAGCGG+TGG | + | chr2_2:188884-188903 | Msa0228850:CDS | 50.0% | |
| ACCATACCACCGCTAACAAC+CGG | - | chr2_2:188893-188912 | None:intergenic | 50.0% | |
| TGGAGATTGGAAGCCATGTC+AGG | - | chr2_2:188950-188969 | None:intergenic | 50.0% | |
| CCATACTTGAGGCTGGAGAT+TGG | - | chr2_2:188963-188982 | None:intergenic | 50.0% | |
| CCAATCTCCAGCCTCAAGTA+TGG | + | chr2_2:188960-188979 | Msa0228850:CDS | 50.0% | |
| TGCTAAGCCATACTTGAGGC+TGG | - | chr2_2:188970-188989 | None:intergenic | 50.0% | |
| AGATTCGAGGAGCAGCAATG+TGG | + | chr2_2:189500-189519 | Msa0228850:intron | 50.0% | |
| TGCAGATGTGCAGGAGCAAT+GGG | - | chr2_2:189599-189618 | None:intergenic | 50.0% | |
| TTGCAGATGTGCAGGAGCAA+TGG | - | chr2_2:189600-189619 | None:intergenic | 50.0% | |
| GCTCCTGCACATCTGCAATT+AGG | + | chr2_2:189602-189621 | Msa0228850:intron | 50.0% | |
| AGAAGAGTCGCACGAATCAG+GGG | - | chr2_2:189770-189789 | None:intergenic | 50.0% | |
| GAAGAAGAGTCGCACGAATC+AGG | - | chr2_2:189772-189791 | None:intergenic | 50.0% | |
| CTTCCACGTGCAAACTGTGA+AGG | + | chr2_2:189818-189837 | Msa0228850:intron | 50.0% | |
| TTCCCTTCACAGTTTGCACG+TGG | - | chr2_2:189824-189843 | None:intergenic | 50.0% | |
| ! | TGTTGGTGTTTCCGATGAGG+AGG | - | chr2_2:189966-189985 | None:intergenic | 50.0% |
| ! | GGATGTTGGTGTTTCCGATG+AGG | - | chr2_2:189969-189988 | None:intergenic | 50.0% |
| GACTGGTGACAACCTTGAAG+TGG | + | chr2_2:190012-190031 | Msa0228850:intron | 50.0% | |
| GTGACAACCTTGAAGTGGCT+TGG | + | chr2_2:190017-190036 | Msa0228850:intron | 50.0% | |
| ! | ACCTTGAAGTGGCTTGGGAA+TGG | + | chr2_2:190023-190042 | Msa0228850:intron | 50.0% |
| TCCATTCCCAAGCCACTTCA+AGG | - | chr2_2:190027-190046 | None:intergenic | 50.0% | |
| ACCCAAGCGCTACAATCTTC+AGG | + | chr2_2:190765-190784 | Msa0228850:CDS | 50.0% | |
| CACCTGAAGATTGTAGCGCT+TGG | - | chr2_2:190770-190789 | None:intergenic | 50.0% | |
| CCCCTGCCATTATAGCTCAA+AGG | + | chr2_2:190857-190876 | Msa0228850:CDS | 50.0% | |
| ! | TTAGGACTAGTGGGTGATGG+TGG | + | chr2_2:191077-191096 | Msa0228850:intron | 50.0% |
| AAAAACTGAGCTGAACCGGC+CGG | + | chr2_2:191576-191595 | Msa0228850:intron | 50.0% | |
| AGGTTGAGCTGAGGGAAAGA+GGG | + | chr2_2:192104-192123 | Msa0228850:three_prime_UTR | 50.0% | |
| GAGGGAAAGAGGGAATGGAT+AGG | + | chr2_2:192114-192133 | Msa0228850:three_prime_UTR | 50.0% | |
| ! | GCACCGACACTTCGGATAGA+AGG | + | chr2_2:187000-187019 | Msa0228850:intron | 55.0% |
| GTGGAGGGGTCAGACACTAT+TGG | - | chr2_2:188788-188807 | None:intergenic | 55.0% | |
| GGTCAGGGGAACTACTTCTG+TGG | - | chr2_2:188843-188862 | None:intergenic | 55.0% | |
| TCCGGTTGTTAGCGGTGGTA+TGG | + | chr2_2:188889-188908 | Msa0228850:CDS | 55.0% | |
| !! | CTACGAAGAGGCACTCCTAC+TGG | - | chr2_2:189334-189353 | None:intergenic | 55.0% |
| TCCATTGCGACGCGTTCACT+AGG | + | chr2_2:189523-189542 | Msa0228850:intron | 55.0% | |
| ACCTAGTGAACGCGTCGCAA+TGG | - | chr2_2:189527-189546 | None:intergenic | 55.0% | |
| GGAGCAATGGGGACGCAATA+AGG | - | chr2_2:189587-189606 | None:intergenic | 55.0% | |
| GCAGATGTGCAGGAGCAATG+GGG | - | chr2_2:189598-189617 | None:intergenic | 55.0% | |
| GAAGAGTCGCACGAATCAGG+GGG | - | chr2_2:189769-189788 | None:intergenic | 55.0% | |
| CATGGGCTTTCTCAGTTCGC+AGG | - | chr2_2:189859-189878 | None:intergenic | 55.0% | |
| GTCCCAGACTAATGTCGCAG+TGG | + | chr2_2:190797-190816 | Msa0228850:CDS | 55.0% | |
| !! | CACCGGTTCGATCTTCACTC+TGG | + | chr2_2:191834-191853 | Msa0228850:intron | 55.0% |
| GAGGTTGAGCTGAGGGAAAG+AGG | + | chr2_2:192103-192122 | Msa0228850:three_prime_UTR | 55.0% | |
| GAGCTGAGGGAAAGAGGGAA+TGG | + | chr2_2:192109-192128 | Msa0228850:three_prime_UTR | 55.0% | |
| CAGCAGCAGCAGTAGCCAGT+AGG | + | chr2_2:189316-189335 | Msa0228850:intron | 60.0% | |
| GACGCGTTCACTAGGTGCGT+CGG | + | chr2_2:189531-189550 | Msa0228850:intron | 60.0% | |
| ! | TTCACTAGGTGCGTCGGTCG+TGG | + | chr2_2:189537-189556 | Msa0228850:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 186458 | 192330 | 186458 | ID=Msa0228850;Name=Msa0228850 |
| chr2_2 | mRNA | 186458 | 192330 | 186458 | ID=Msa0228850-mRNA-1;Parent=Msa0228850;Name=Msa0228850-mRNA-1;_AED=0.30;_eAED=0.30;_QI=47|0.83|0.85|1|0.83|0.85|7|279|341 |
| chr2_2 | exon | 186458 | 186610 | 186458 | ID=Msa0228850-mRNA-1:exon:86;Parent=Msa0228850-mRNA-1 |
| chr2_2 | exon | 186770 | 186866 | 186770 | ID=Msa0228850-mRNA-1:exon:87;Parent=Msa0228850-mRNA-1 |
| chr2_2 | exon | 187493 | 187547 | 187493 | ID=Msa0228850-mRNA-1:exon:88;Parent=Msa0228850-mRNA-1 |
| chr2_2 | exon | 187650 | 187745 | 187650 | ID=Msa0228850-mRNA-1:exon:89;Parent=Msa0228850-mRNA-1 |
| chr2_2 | exon | 188671 | 189101 | 188671 | ID=Msa0228850-mRNA-1:exon:90;Parent=Msa0228850-mRNA-1 |
| chr2_2 | exon | 190749 | 190878 | 190749 | ID=Msa0228850-mRNA-1:exon:91;Parent=Msa0228850-mRNA-1 |
| chr2_2 | exon | 191941 | 192330 | 191941 | ID=Msa0228850-mRNA-1:exon:92;Parent=Msa0228850-mRNA-1 |
| chr2_2 | five_prime_UTR | 186458 | 186504 | 186458 | ID=Msa0228850-mRNA-1:five_prime_utr;Parent=Msa0228850-mRNA-1 |
| chr2_2 | CDS | 186505 | 186610 | 186505 | ID=Msa0228850-mRNA-1:cds;Parent=Msa0228850-mRNA-1 |
| chr2_2 | CDS | 186770 | 186866 | 186770 | ID=Msa0228850-mRNA-1:cds;Parent=Msa0228850-mRNA-1 |
| chr2_2 | CDS | 187493 | 187547 | 187493 | ID=Msa0228850-mRNA-1:cds;Parent=Msa0228850-mRNA-1 |
| chr2_2 | CDS | 187650 | 187745 | 187650 | ID=Msa0228850-mRNA-1:cds;Parent=Msa0228850-mRNA-1 |
| chr2_2 | CDS | 188671 | 189101 | 188671 | ID=Msa0228850-mRNA-1:cds;Parent=Msa0228850-mRNA-1 |
| chr2_2 | CDS | 190749 | 190878 | 190749 | ID=Msa0228850-mRNA-1:cds;Parent=Msa0228850-mRNA-1 |
| chr2_2 | CDS | 191941 | 192051 | 191941 | ID=Msa0228850-mRNA-1:cds;Parent=Msa0228850-mRNA-1 |
| chr2_2 | three_prime_UTR | 192052 | 192330 | 192052 | ID=Msa0228850-mRNA-1:three_prime_utr;Parent=Msa0228850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
