Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051110 | XP_003621577.1 | 90.202 | 347 | 14 | 3 | 1 | 327 | 1 | 347 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051110 | sp|Q9CAA4|BIM2_ARATH | 37.419 | 310 | 145 | 9 | 3 | 291 | 2 | 283 | 1.23e-44 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051110 | G7KRZ1 | 90.202 | 347 | 14 | 3 | 1 | 327 | 1 | 347 | 0.0 | 562 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0228850 | Msa1051110 | 0.993427 | 1.172450e-199 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051110 | MtrunA17_Chr7g0220371 | 90.202 | 347 | 14 | 3 | 1 | 327 | 1 | 347 | 0.0 | 562 |
| Msa1051110 | MtrunA17_Chr5g0420701 | 38.562 | 306 | 146 | 8 | 46 | 323 | 41 | 332 | 1.36e-50 | 171 |
| Msa1051110 | MtrunA17_Chr4g0061791 | 36.364 | 363 | 177 | 14 | 1 | 323 | 218 | 566 | 1.80e-44 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051110 | AT1G69010.1 | 37.419 | 310 | 145 | 9 | 3 | 291 | 2 | 283 | 1.25e-45 | 157 |
| Msa1051110 | AT5G38860.1 | 32.680 | 306 | 147 | 5 | 44 | 324 | 27 | 298 | 7.19e-40 | 142 |
| Msa1051110 | AT5G08130.3 | 34.983 | 303 | 141 | 11 | 1 | 279 | 103 | 373 | 2.08e-31 | 122 |
| Msa1051110 | AT5G08130.1 | 34.653 | 303 | 143 | 11 | 1 | 279 | 103 | 374 | 5.35e-31 | 121 |
| Msa1051110 | AT5G08130.7 | 34.437 | 302 | 146 | 9 | 1 | 280 | 223 | 494 | 1.11e-30 | 121 |
| Msa1051110 | AT5G08130.5 | 34.437 | 302 | 146 | 9 | 1 | 280 | 227 | 498 | 1.15e-30 | 121 |
| Msa1051110 | AT5G08130.2 | 34.106 | 302 | 148 | 9 | 1 | 280 | 223 | 495 | 2.44e-30 | 120 |
| Msa1051110 | AT5G08130.4 | 34.106 | 302 | 148 | 9 | 1 | 280 | 223 | 495 | 2.44e-30 | 120 |
| Msa1051110 | AT5G08130.8 | 34.539 | 304 | 144 | 11 | 1 | 280 | 227 | 499 | 2.59e-30 | 120 |
| Msa1051110 | AT5G08130.6 | 34.539 | 304 | 144 | 11 | 1 | 280 | 223 | 495 | 2.70e-30 | 120 |
| Msa1051110 | AT5G38860.2 | 40.351 | 171 | 77 | 3 | 44 | 189 | 27 | 197 | 1.23e-28 | 110 |
Find 92 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAATTTGTTCAAGAAAA+TGG | 0.171896 | 7_2:+17640394 | Msa1051110:exon |
| AAATGTATATTTCATGATTC+TGG | 0.218307 | 7_2:+17646082 | Msa1051110:three_prime_UTR |
| CCTTCTCGAGCTATTCAAAA+TGG | 0.240427 | 7_2:+17642615 | Msa1051110:CDS |
| GCTTCTCTTCTGAACCTCTT+TGG | 0.254372 | 7_2:-17645930 | None:intergenic |
| CAACCAATTCTTCATCTTGA+TGG | 0.291614 | 7_2:-17640433 | None:intergenic |
| TTCGTGTTTAAACAGAATAT+TGG | 0.303552 | 7_2:+17644642 | Msa1051110:intron |
| GTTGGTAGACGAACAAATAT+TGG | 0.308030 | 7_2:+17644736 | Msa1051110:CDS |
| TGAGTATATTCATTTCTTAC+AGG | 0.317013 | 7_2:+17641563 | Msa1051110:CDS |
| AACAAACCTTTGAGCTATAA+TGG | 0.339100 | 7_2:-17644771 | None:intergenic |
| TGGAGGGGTCAGACACTATT+GGG | 0.346563 | 7_2:-17642692 | None:intergenic |
| ACCCATGGAATTAATTTAGT+TGG | 0.355118 | 7_2:-17641633 | None:intergenic |
| ACCAAGTACCTCCAACAAAA+AGG | 0.357315 | 7_2:-17641442 | None:intergenic |
| GTGGAGGGGTCAGACACTAT+TGG | 0.360556 | 7_2:-17642693 | None:intergenic |
| TCGTGTTTAAACAGAATATT+GGG | 0.364366 | 7_2:+17644643 | Msa1051110:intron |
| TTTCCACTGCGACATTAGTC+TGG | 0.369636 | 7_2:-17644708 | None:intergenic |
| ATTCAGAAGGGTTGCATCCC+TGG | 0.380134 | 7_2:+17642720 | Msa1051110:CDS |
| CCAATCTCCAGCCTCAAGTA+TGG | 0.384078 | 7_2:+17642868 | Msa1051110:CDS |
| ACAATATGATTGTCCTTGTT+TGG | 0.394063 | 7_2:-17642900 | None:intergenic |
| AGGCCATCAAGATGAAGAAT+TGG | 0.415929 | 7_2:+17640430 | Msa1051110:CDS |
| ATTCAAAATGGGTCTGTTGA+TGG | 0.420277 | 7_2:+17642627 | Msa1051110:CDS |
| TCCTTATGAAGGATGGAATC+AGG | 0.425736 | 7_2:+17641608 | Msa1051110:CDS |
| CCAATCGCATTTGCATGGTC+AGG | 0.430055 | 7_2:-17642764 | None:intergenic |
| GAGGTTGAGCTGAGGGAAAG+AGG | 0.432735 | 7_2:+17646011 | Msa1051110:three_prime_UTR |
| CCATACTTGAGGCTGGAGAT+TGG | 0.439386 | 7_2:-17642868 | None:intergenic |
| ACCTGAAGATTGTAGCGCTT+GGG | 0.439567 | 7_2:-17644674 | None:intergenic |
| AGGTTGAGCTGAGGGAAAGA+GGG | 0.446663 | 7_2:+17646012 | Msa1051110:three_prime_UTR |
| AGCCAACTAAATTAATTCCA+TGG | 0.454176 | 7_2:+17641631 | Msa1051110:CDS |
| ACCATACCACCGCTAACAAC+CGG | 0.455738 | 7_2:-17642798 | None:intergenic |
| TCCTGATTCCATCCTTCATA+AGG | 0.456798 | 7_2:-17641609 | None:intergenic |
| TGTTTCAGATAATACATTGA+AGG | 0.463774 | 7_2:+17642920 | Msa1051110:CDS |
| CACCTGAAGATTGTAGCGCT+TGG | 0.468612 | 7_2:-17644675 | None:intergenic |
| ACCCAAGCGCTACAATCTTC+AGG | 0.469010 | 7_2:+17644673 | Msa1051110:CDS |
| ATTTATGAACATCCTTATGA+AGG | 0.475064 | 7_2:+17641597 | Msa1051110:CDS |
| AACCTTTGAGCTATAATGGC+AGG | 0.478271 | 7_2:-17644767 | None:intergenic |
| AAAGAGGGAATGGATAGGTC+AGG | 0.491712 | 7_2:+17646027 | Msa1051110:three_prime_UTR |
| CTTCTCGAGCTATTCAAAAT+GGG | 0.493981 | 7_2:+17642616 | Msa1051110:CDS |
| TGCTAAGCCATACTTGAGGC+TGG | 0.494117 | 7_2:-17642875 | None:intergenic |
| TGAACCCATCAGAGGGAAAA+GGG | 0.494552 | 7_2:+17640688 | Msa1051110:CDS |
| TGGAGATTGGAAGCCATGTC+AGG | 0.500262 | 7_2:-17642855 | None:intergenic |
| ATGAACCCATCAGAGGGAAA+AGG | 0.501254 | 7_2:+17640687 | Msa1051110:CDS |
| ACTACTTCTGTGGATGAACC+AGG | 0.503685 | 7_2:-17642738 | None:intergenic |
| GAGGAGATGAAAATTGATAG+TGG | 0.504298 | 7_2:+17642948 | Msa1051110:CDS |
| AATCAAGCAATAGCATGTTC+AGG | 0.506167 | 7_2:+17645873 | Msa1051110:CDS |
| GCCATGTCAGGATTAGATAC+AGG | 0.508965 | 7_2:-17642843 | None:intergenic |
| GAGCTGAGGGAAAGAGGGAA+TGG | 0.516947 | 7_2:+17646017 | Msa1051110:three_prime_UTR |
| CCTGACCATGCAAATGCGAT+TGG | 0.517967 | 7_2:+17642764 | Msa1051110:CDS |
| ATGAACATCCTTATGAAGGA+TGG | 0.522411 | 7_2:+17641601 | Msa1051110:CDS |
| GCGATTGGACATGTTTGATC+CGG | 0.526444 | 7_2:+17642779 | Msa1051110:CDS |
| GCCAACTAAATTAATTCCAT+GGG | 0.528721 | 7_2:+17641632 | Msa1051110:CDS |
| TCCGGTTGTTAGCGGTGGTA+TGG | 0.531955 | 7_2:+17642797 | Msa1051110:CDS |
| CAATCGCATTTGCATGGTCA+GGG | 0.532625 | 7_2:-17642763 | None:intergenic |
| ATGTTTGATCCGGTTGTTAG+CGG | 0.533535 | 7_2:+17642789 | Msa1051110:CDS |
| CTGAATGCTTAGAACGATGA+GGG | 0.533904 | 7_2:-17640715 | None:intergenic |
| TTGTGACTTGGCAGTGAAGG+TGG | 0.535432 | 7_2:+17640664 | Msa1051110:intron |
| ACCTTTGAGCTATAATGGCA+GGG | 0.551595 | 7_2:-17644766 | None:intergenic |
| TCTCAAGTGCCTACTCTCAA+AGG | 0.555019 | 7_2:+17642988 | Msa1051110:CDS |
| AGCAATAGCATGTTCAGGAA+TGG | 0.555359 | 7_2:+17645878 | Msa1051110:CDS |
| CCCCTCCACAACTATTCAGA+AGG | 0.558361 | 7_2:+17642707 | Msa1051110:CDS |
| TTCCACTGCGACATTAGTCT+GGG | 0.559741 | 7_2:-17644707 | None:intergenic |
| CCCTTCTGAATAGTTGTGGA+GGG | 0.566151 | 7_2:-17642708 | None:intergenic |
| AAAATGGCTAGGTCTGCTAA+AGG | 0.571124 | 7_2:+17640410 | Msa1051110:exon |
| CATGTCCAATCGCATTTGCA+TGG | 0.574061 | 7_2:-17642769 | None:intergenic |
| TCAAATACTTACACAAGTGA+TGG | 0.579281 | 7_2:-17646176 | None:intergenic |
| CCCCTGCCATTATAGCTCAA+AGG | 0.581622 | 7_2:+17644765 | Msa1051110:CDS |
| TTTGATCCGGTTGTTAGCGG+TGG | 0.584063 | 7_2:+17642792 | Msa1051110:CDS |
| ACCCTTCTGAATAGTTGTGG+AGG | 0.584253 | 7_2:-17642709 | None:intergenic |
| GAAGAAGTAAAATTAATGAA+AGG | 0.584856 | 7_2:+17640753 | Msa1051110:CDS |
| GCAACCCTTCTGAATAGTTG+TGG | 0.585019 | 7_2:-17642712 | None:intergenic |
| ATTTGTTCAAGAAAATGGCT+AGG | 0.596675 | 7_2:+17640399 | Msa1051110:exon |
| CCTTTGAGCTATAATGGCAG+GGG | 0.598339 | 7_2:-17644765 | None:intergenic |
| TAATACATTGAAGGAACAAG+AGG | 0.600684 | 7_2:+17642929 | Msa1051110:CDS |
| AGGTGGATGAACCCATCAGA+GGG | 0.603757 | 7_2:+17640681 | Msa1051110:CDS |
| AACAGAACAAAATGAACATG+AGG | 0.609065 | 7_2:-17645970 | None:intergenic |
| TCTGAATGCTTAGAACGATG+AGG | 0.614104 | 7_2:-17640716 | None:intergenic |
| AGAAACTCACCTTTGAGAGT+AGG | 0.618012 | 7_2:-17642997 | None:intergenic |
| ATGGCTTAGCAAACCAAACA+AGG | 0.619238 | 7_2:+17642887 | Msa1051110:CDS |
| GCCTGTATCTAATCCTGACA+TGG | 0.619504 | 7_2:+17642842 | Msa1051110:CDS |
| GGTCAGGGGAACTACTTCTG+TGG | 0.634643 | 7_2:-17642748 | None:intergenic |
| CCTTCTGAATAGTTGTGGAG+GGG | 0.636473 | 7_2:-17642707 | None:intergenic |
| GGTTTGCTAAGCCATACTTG+AGG | 0.640701 | 7_2:-17642879 | None:intergenic |
| GTCGCAGTGGAAATTGATGT+TGG | 0.642132 | 7_2:+17644718 | Msa1051110:CDS |
| AAGGTGGATGAACCCATCAG+AGG | 0.649580 | 7_2:+17640680 | Msa1051110:CDS |
| AATCGCATTTGCATGGTCAG+GGG | 0.653290 | 7_2:-17642762 | None:intergenic |
| CCCTCCACAACTATTCAGAA+GGG | 0.654712 | 7_2:+17642708 | Msa1051110:CDS |
| GAGGGAAAGAGGGAATGGAT+AGG | 0.654849 | 7_2:+17646022 | Msa1051110:three_prime_UTR |
| TCATCTCTCAACAACAACAA+TGG | 0.655170 | 7_2:+17640497 | Msa1051110:CDS |
| AGGAATGGATTACTTCAGTG+AGG | 0.664514 | 7_2:+17645893 | Msa1051110:CDS |
| ATTCTGAACAAAGTCCAAAG+AGG | 0.673768 | 7_2:+17645916 | Msa1051110:CDS |
| AATAGCTCGAGAAGGATCTG+TGG | 0.691231 | 7_2:-17642607 | None:intergenic |
| CTTTGAGCTATAATGGCAGG+GGG | 0.694018 | 7_2:-17644764 | None:intergenic |
| CTACTTCTGTGGATGAACCA+GGG | 0.695417 | 7_2:-17642737 | None:intergenic |
| GTCCCAGACTAATGTCGCAG+TGG | 0.698666 | 7_2:+17644705 | Msa1051110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTCTTGTAAATTAAAT+TGG | + | chr7_2:17641492-17641511 | Msa1051110:intron | 10.0% |
| !! | ATATTCTTGTAAATTAAATT+GGG | + | chr7_2:17641493-17641512 | Msa1051110:intron | 10.0% |
| !!! | CTTTTTTTTGTTTATTTAAA+AGG | + | chr7_2:17644844-17644863 | Msa1051110:intron | 10.0% |
| !! | TAATCATATGTAAGATTATA+TGG | + | chr7_2:17641904-17641923 | Msa1051110:intron | 15.0% |
| !! | AATCATATGTAAGATTATAT+GGG | + | chr7_2:17641905-17641924 | Msa1051110:intron | 15.0% |
| !! | TAAAAAATGTTGTCAAATAA+CGG | + | chr7_2:17642042-17642061 | Msa1051110:intron | 15.0% |
| !! | AAAAAAGAGTTAAAACTATT+GGG | - | chr7_2:17643562-17643581 | None:intergenic | 15.0% |
| !! | AAAAAAAGAGTTAAAACTAT+TGG | - | chr7_2:17643563-17643582 | None:intergenic | 15.0% |
| !! | CATAAATACTAACAAATTAA+AGG | - | chr7_2:17644036-17644055 | None:intergenic | 15.0% |
| !!! | CATATAATTTTCAAAATAAG+TGG | + | chr7_2:17644523-17644542 | Msa1051110:intron | 15.0% |
| !! | TTTATTATATGAGAGTTTAT+GGG | - | chr7_2:17645294-17645313 | None:intergenic | 15.0% |
| !!! | AGAAAATTTGTTCAAGAAAA+TGG | + | chr7_2:17640394-17640413 | Msa1051110:exon | 20.0% |
| !! | GAAGAAGTAAAATTAATGAA+AGG | + | chr7_2:17640753-17640772 | Msa1051110:CDS | 20.0% |
| !! | ATATTTAGTAATGATCTATG+TGG | + | chr7_2:17640886-17640905 | Msa1051110:intron | 20.0% |
| !! | ACATAATTGAATGTAATTAC+AGG | - | chr7_2:17640975-17640994 | None:intergenic | 20.0% |
| !!! | ATTCAATTATGTCATTTTCT+TGG | + | chr7_2:17640983-17641002 | Msa1051110:intron | 20.0% |
| !! | TGATTGTGTAAAATTGATTA+TGG | + | chr7_2:17641050-17641069 | Msa1051110:intron | 20.0% |
| !! | AAGGTAAACTTATTTATGTT+TGG | + | chr7_2:17641087-17641106 | Msa1051110:intron | 20.0% |
| !! | AGAATCAATTATATACTTCT+AGG | + | chr7_2:17641224-17641243 | Msa1051110:intron | 20.0% |
| !! | TAGTAATTTAAGTGTATGTT+TGG | - | chr7_2:17641278-17641297 | None:intergenic | 20.0% |
| !!! | CTTAAGATTTTACCATTTTA+TGG | + | chr7_2:17642440-17642459 | Msa1051110:intron | 20.0% |
| !!! | TTTTTTTAGAGAAATCATCA+CGG | + | chr7_2:17642570-17642589 | Msa1051110:intron | 20.0% |
| !! | CATGAAGAATAATAAAATCT+AGG | - | chr7_2:17643617-17643636 | None:intergenic | 20.0% |
| !! | CTTAAATTAACCATTATTCT+TGG | - | chr7_2:17643898-17643917 | None:intergenic | 20.0% |
| !! | TCAATAGTTAATGATTAAAG+AGG | - | chr7_2:17643994-17644013 | None:intergenic | 20.0% |
| !!! | ATGGGTCATATAATTATTTT+TGG | - | chr7_2:17644338-17644357 | None:intergenic | 20.0% |
| !! | CAAATATAAAGCTTATACAT+TGG | - | chr7_2:17644953-17644972 | None:intergenic | 20.0% |
| !!! | CAATGTATAAGCTTTATATT+TGG | + | chr7_2:17644951-17644970 | Msa1051110:intron | 20.0% |
| !!! | TAAGTACTTATGTATGTTTT+TGG | + | chr7_2:17645053-17645072 | Msa1051110:intron | 20.0% |
| !!! | GATACTTCATTATATGTTTT+CGG | + | chr7_2:17645099-17645118 | Msa1051110:intron | 20.0% |
| !!! | TGAAAATAAAATTTGAGACA+TGG | - | chr7_2:17645188-17645207 | None:intergenic | 20.0% |
| !! | TTCAATAAGCTATTTGTATT+TGG | - | chr7_2:17645258-17645277 | None:intergenic | 20.0% |
| !! | GTTTATTATATGAGAGTTTA+TGG | - | chr7_2:17645295-17645314 | None:intergenic | 20.0% |
| !! | CTCATAATAAACACTTAATT+AGG | + | chr7_2:17645405-17645424 | Msa1051110:intron | 20.0% |
| !!! | TTGGTATAAGATGATTTTTA+AGG | - | chr7_2:17645813-17645832 | None:intergenic | 20.0% |
| !! | AAATGTATATTTCATGATTC+TGG | + | chr7_2:17646082-17646101 | Msa1051110:three_prime_UTR | 20.0% |
| !!! | AGCTTATTATAACTTTTGTT+TGG | + | chr7_2:17646143-17646162 | Msa1051110:three_prime_UTR | 20.0% |
| ! | ATTCATGATTCCTTGATTAA+TGG | + | chr7_2:17640563-17640582 | Msa1051110:intron | 25.0% |
| ! | TTCATGATTCCTTGATTAAT+GGG | + | chr7_2:17640564-17640583 | Msa1051110:intron | 25.0% |
| !! | TCATTTTCTTGGTATATGTT+TGG | + | chr7_2:17640994-17641013 | Msa1051110:intron | 25.0% |
| !! | TCTCTTTTTGAATCATTTTC+AGG | - | chr7_2:17641414-17641433 | None:intergenic | 25.0% |
| ! | TGAGTATATTCATTTCTTAC+AGG | + | chr7_2:17641563-17641582 | Msa1051110:CDS | 25.0% |
| ! | ATTTATGAACATCCTTATGA+AGG | + | chr7_2:17641597-17641616 | Msa1051110:CDS | 25.0% |
| ! | AATGAGTAATTCACTTTACA+GGG | - | chr7_2:17641874-17641893 | None:intergenic | 25.0% |
| ! | AAATGAGTAATTCACTTTAC+AGG | - | chr7_2:17641875-17641894 | None:intergenic | 25.0% |
| !!! | GACAACATTTTTTAGATATG+AGG | - | chr7_2:17642036-17642055 | None:intergenic | 25.0% |
| !!! | ACAAGATCAAATTTTAGAAC+AGG | - | chr7_2:17642226-17642245 | None:intergenic | 25.0% |
| !!! | TGTACATTTTTAGGAAATGA+CGG | - | chr7_2:17642669-17642688 | None:intergenic | 25.0% |
| ! | TGTTTCAGATAATACATTGA+AGG | + | chr7_2:17642920-17642939 | Msa1051110:CDS | 25.0% |
| ! | CATACATTTAACATGAAATC+AGG | - | chr7_2:17643050-17643069 | None:intergenic | 25.0% |
| ! | AAGTCATTCAATCATAATGT+TGG | + | chr7_2:17643192-17643211 | Msa1051110:intron | 25.0% |
| ! | ATTCAATCATAATGTTGGAT+TGG | + | chr7_2:17643197-17643216 | Msa1051110:intron | 25.0% |
| ! | TAAAACTATTGGGTATTTGA+TGG | - | chr7_2:17643552-17643571 | None:intergenic | 25.0% |
| !!! | CTCTTTTTTTAAGCGTATAT+AGG | + | chr7_2:17643573-17643592 | Msa1051110:intron | 25.0% |
| ! | AAACAACAGATTAAAAACAC+AGG | - | chr7_2:17644062-17644081 | None:intergenic | 25.0% |
| ! | AACAAAGCTGTATGTATTAT+TGG | + | chr7_2:17644155-17644174 | Msa1051110:intron | 25.0% |
| ! | TATTACTTAAATCTGACAGA+AGG | + | chr7_2:17644189-17644208 | Msa1051110:intron | 25.0% |
| ! | TTATAATTGTGCATGAGATT+CGG | + | chr7_2:17644387-17644406 | Msa1051110:intron | 25.0% |
| ! | TTGACATAAGAAAATGTTCA+AGG | + | chr7_2:17644434-17644453 | Msa1051110:intron | 25.0% |
| ! | TGACATAAGAAAATGTTCAA+GGG | + | chr7_2:17644435-17644454 | Msa1051110:intron | 25.0% |
| ! | TTCGTGTTTAAACAGAATAT+TGG | + | chr7_2:17644642-17644661 | Msa1051110:intron | 25.0% |
| ! | TCGTGTTTAAACAGAATATT+GGG | + | chr7_2:17644643-17644662 | Msa1051110:intron | 25.0% |
| !!! | CGTTATTTTTCTTCATTCTA+TGG | + | chr7_2:17644798-17644817 | Msa1051110:intron | 25.0% |
| ! | AACAATGAATAAACTTTGCA+GGG | - | chr7_2:17644824-17644843 | None:intergenic | 25.0% |
| ! | AAACACAAATAAACTCAACA+AGG | - | chr7_2:17645022-17645041 | None:intergenic | 25.0% |
| ! | ACATAAGTACTTATATAGTG+TGG | - | chr7_2:17645046-17645065 | None:intergenic | 25.0% |
| ! | TTGATCAGTTATATTGTTGT+TGG | + | chr7_2:17645548-17645567 | Msa1051110:intron | 25.0% |
| !! | ACTCTGCAACAATAAAATTT+TGG | - | chr7_2:17645832-17645851 | None:intergenic | 25.0% |
| !!! | GACATTTTAGAATAAACGTT+TGG | + | chr7_2:17646117-17646136 | Msa1051110:three_prime_UTR | 25.0% |
| ATTTGTTCAAGAAAATGGCT+AGG | + | chr7_2:17640399-17640418 | Msa1051110:exon | 30.0% | |
| ! | TTGAGAGATGAAGATGTTTT+TGG | - | chr7_2:17640488-17640507 | None:intergenic | 30.0% |
| AGGAATCATGAATCATTGTT+GGG | - | chr7_2:17640556-17640575 | None:intergenic | 30.0% | |
| AAGGAATCATGAATCATTGT+TGG | - | chr7_2:17640557-17640576 | None:intergenic | 30.0% | |
| TTTGATACACCCATTAATCA+AGG | - | chr7_2:17640576-17640595 | None:intergenic | 30.0% | |
| ATTGCAGAGCACAATTAAAA+TGG | - | chr7_2:17640613-17640632 | None:intergenic | 30.0% | |
| !!! | GCAATTTTTTTGTTGTGACT+TGG | + | chr7_2:17640652-17640671 | Msa1051110:intron | 30.0% |
| TATGGCTAAAAGTGAGTTAA+AGG | + | chr7_2:17641068-17641087 | Msa1051110:intron | 30.0% | |
| ATATTTGTGTGACAGATTTC+AGG | + | chr7_2:17641371-17641390 | Msa1051110:intron | 30.0% | |
| ! | AGATAAAGCTTCCTTTTTGT+TGG | + | chr7_2:17641431-17641450 | Msa1051110:CDS | 30.0% |
| TGCACATAAGACAAAAACAA+AGG | - | chr7_2:17641537-17641556 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTGTCTTATGTGC+AGG | + | chr7_2:17641536-17641555 | Msa1051110:intron | 30.0% |
| AGCCAACTAAATTAATTCCA+TGG | + | chr7_2:17641631-17641650 | Msa1051110:CDS | 30.0% | |
| GCCAACTAAATTAATTCCAT+GGG | + | chr7_2:17641632-17641651 | Msa1051110:CDS | 30.0% | |
| ACCCATGGAATTAATTTAGT+TGG | - | chr7_2:17641636-17641655 | None:intergenic | 30.0% | |
| ATTCCATGGGTAAAGTTATT+TGG | + | chr7_2:17641645-17641664 | Msa1051110:intron | 30.0% | |
| ATTCCAAATAACTTTACCCA+TGG | - | chr7_2:17641651-17641670 | None:intergenic | 30.0% | |
| ! | TCCATTGCTTTATTCATCAA+CGG | - | chr7_2:17641760-17641779 | None:intergenic | 30.0% |
| GCAACAAATTATGAATGCAT+TGG | + | chr7_2:17641799-17641818 | Msa1051110:intron | 30.0% | |
| ! | ACCGTTGATTGATTAGTATA+TGG | + | chr7_2:17641829-17641848 | Msa1051110:intron | 30.0% |
| CCCATATACTAATCAATCAA+CGG | - | chr7_2:17641833-17641852 | None:intergenic | 30.0% | |
| ! | CCGTTGATTGATTAGTATAT+GGG | + | chr7_2:17641830-17641849 | Msa1051110:intron | 30.0% |
| !!! | CTACTGTTATTTTGTGATAC+AGG | + | chr7_2:17642097-17642116 | Msa1051110:intron | 30.0% |
| GTTTCTTCTGCATTTAAATC+AGG | - | chr7_2:17642345-17642364 | None:intergenic | 30.0% | |
| TTATGCACTTGACATACAAT+CGG | - | chr7_2:17642387-17642406 | None:intergenic | 30.0% | |
| TTGTGAGAACTATATCATTG+AGG | - | chr7_2:17642476-17642495 | None:intergenic | 30.0% | |
| ! | ATTGGGTTCTGTACATTTTT+AGG | - | chr7_2:17642678-17642697 | None:intergenic | 30.0% |
| ACAATATGATTGTCCTTGTT+TGG | - | chr7_2:17642903-17642922 | None:intergenic | 30.0% | |
| TAATACATTGAAGGAACAAG+AGG | + | chr7_2:17642929-17642948 | Msa1051110:CDS | 30.0% | |
| ! | CACATTTTGTGTGTTACAAA+AGG | + | chr7_2:17643098-17643117 | Msa1051110:intron | 30.0% |
| CAATAGAGAACATAGACATA+CGG | - | chr7_2:17643366-17643385 | None:intergenic | 30.0% | |
| ATCTGCAATTAGGATTTAAC+TGG | + | chr7_2:17643520-17643539 | Msa1051110:intron | 30.0% | |
| TAACCATTATTCTTGGATGT+TGG | - | chr7_2:17643891-17643910 | None:intergenic | 30.0% | |
| ! | TTGTTTAGTCTTCGTAATAG+CGG | + | chr7_2:17644076-17644095 | Msa1051110:intron | 30.0% |
| CTGTATGTATTATTGGTGTA+AGG | + | chr7_2:17644162-17644181 | Msa1051110:intron | 30.0% | |
| ! | ACTACTCTTTGCAATTTGTT+AGG | + | chr7_2:17644298-17644317 | Msa1051110:intron | 30.0% |
| ! | CTCTAATAATTTTGTCGGAT+GGG | - | chr7_2:17644356-17644375 | None:intergenic | 30.0% |
| ! | ACTCTAATAATTTTGTCGGA+TGG | - | chr7_2:17644357-17644376 | None:intergenic | 30.0% |
| ! | TGGCACTCTAATAATTTTGT+CGG | - | chr7_2:17644361-17644380 | None:intergenic | 30.0% |
| ! | AAAATTATTAGAGTGCCACT+TGG | + | chr7_2:17644363-17644382 | Msa1051110:intron | 30.0% |
| ATGCACAATTATAAACCAAG+TGG | - | chr7_2:17644381-17644400 | None:intergenic | 30.0% | |
| GTGTTGAAGAATTAATTTCC+TGG | - | chr7_2:17644565-17644584 | None:intergenic | 30.0% | |
| AACAAACCTTTGAGCTATAA+TGG | - | chr7_2:17644774-17644793 | None:intergenic | 30.0% | |
| GAACAATGAATAAACTTTGC+AGG | - | chr7_2:17644825-17644844 | None:intergenic | 30.0% | |
| TCATCTAATTTGATCTCTTC+AGG | - | chr7_2:17644882-17644901 | None:intergenic | 30.0% | |
| AGAGATCAAATTAGATGATC+TGG | + | chr7_2:17644884-17644903 | Msa1051110:intron | 30.0% | |
| TATTTGGACAGAGTCAATTT+AGG | + | chr7_2:17644967-17644986 | Msa1051110:intron | 30.0% | |
| !!! | ACCTTTTTCAAGATAGCATA+TGG | + | chr7_2:17645133-17645152 | Msa1051110:intron | 30.0% |
| !!! | CCTTTTTCAAGATAGCATAT+GGG | + | chr7_2:17645134-17645153 | Msa1051110:intron | 30.0% |
| !! | TTTTAAAAACTGAGCTGAAC+CGG | + | chr7_2:17645480-17645499 | Msa1051110:intron | 30.0% |
| TCAACCAATTTAACTGGAAA+CGG | + | chr7_2:17645508-17645527 | Msa1051110:intron | 30.0% | |
| TGATCAAAGCAACTGTAAAA+TGG | - | chr7_2:17645535-17645554 | None:intergenic | 30.0% | |
| ! | ATATTGTTGTTGGATTGAAC+CGG | + | chr7_2:17645558-17645577 | Msa1051110:intron | 30.0% |
| AGGAGAAATGAAACAATATG+AGG | - | chr7_2:17645793-17645812 | None:intergenic | 30.0% | |
| AACAGAACAAAATGAACATG+AGG | - | chr7_2:17645973-17645992 | None:intergenic | 30.0% | |
| !!! | ATGATTCTGGTTTTGAAACA+AGG | + | chr7_2:17646095-17646114 | Msa1051110:three_prime_UTR | 30.0% |
| TCAAATACTTACACAAGTGA+TGG | - | chr7_2:17646179-17646198 | None:intergenic | 30.0% | |
| CAACCAATTCTTCATCTTGA+TGG | - | chr7_2:17640436-17640455 | None:intergenic | 35.0% | |
| TCATCTCTCAACAACAACAA+TGG | + | chr7_2:17640497-17640516 | Msa1051110:CDS | 35.0% | |
| TATTGTAGAGAGAGAAAAGG+AGG | - | chr7_2:17640533-17640552 | None:intergenic | 35.0% | |
| GCTTGAAGTAGAATCAATTC+TGG | + | chr7_2:17641165-17641184 | Msa1051110:intron | 35.0% | |
| ! | TGTTTGGTTTCACATCTAGA+GGG | - | chr7_2:17641262-17641281 | None:intergenic | 35.0% |
| ! | ATGTTTGGTTTCACATCTAG+AGG | - | chr7_2:17641263-17641282 | None:intergenic | 35.0% |
| ! | TAAAGCTTCCTTTTTGTTGG+AGG | + | chr7_2:17641434-17641453 | Msa1051110:CDS | 35.0% |
| ATGAACATCCTTATGAAGGA+TGG | + | chr7_2:17641601-17641620 | Msa1051110:CDS | 35.0% | |
| ! | ACCGTTGATGAATAAAGCAA+TGG | + | chr7_2:17641756-17641775 | Msa1051110:intron | 35.0% |
| TTGTCAAATAACGGCTATAG+TGG | + | chr7_2:17642051-17642070 | Msa1051110:intron | 35.0% | |
| GTTATAGCATTGTAGCGTAT+CGG | + | chr7_2:17642157-17642176 | Msa1051110:intron | 35.0% | |
| !!! | TTTTAGAACAGGTTTGTCGA+TGG | - | chr7_2:17642215-17642234 | None:intergenic | 35.0% |
| TATGCACTTGACATACAATC+GGG | - | chr7_2:17642386-17642405 | None:intergenic | 35.0% | |
| ! | GTTCAAGAATTCAAGTTCAG+TGG | + | chr7_2:17642415-17642434 | Msa1051110:intron | 35.0% |
| GGTTGCTAAATGCCATAAAA+TGG | - | chr7_2:17642455-17642474 | None:intergenic | 35.0% | |
| AAGCCTTGAAATAATAGCAC+TGG | + | chr7_2:17642513-17642532 | Msa1051110:intron | 35.0% | |
| ! | AGAAGGATCTGTGGTATTTT+CGG | - | chr7_2:17642601-17642620 | None:intergenic | 35.0% |
| CTTCTCGAGCTATTCAAAAT+GGG | + | chr7_2:17642616-17642635 | Msa1051110:CDS | 35.0% | |
| ATTCAAAATGGGTCTGTTGA+TGG | + | chr7_2:17642627-17642646 | Msa1051110:CDS | 35.0% | |
| GAGGAGATGAAAATTGATAG+TGG | + | chr7_2:17642948-17642967 | Msa1051110:CDS | 35.0% | |
| GCTATAGCATTGTAACATTG+TGG | + | chr7_2:17643290-17643309 | Msa1051110:intron | 35.0% | |
| TATACCAATGTTGTCAATCG+CGG | - | chr7_2:17643343-17643362 | None:intergenic | 35.0% | |
| ACGCAATAAGGATGTGATAA+AGG | - | chr7_2:17643483-17643502 | None:intergenic | 35.0% | |
| TGGAGAAACAGAAGAAACAT+GGG | - | chr7_2:17643784-17643803 | None:intergenic | 35.0% | |
| AAACTCAAAGATCAGAGCAA+AGG | - | chr7_2:17643832-17643851 | None:intergenic | 35.0% | |
| ACACCAACATCCAAGAATAA+TGG | + | chr7_2:17643885-17643904 | Msa1051110:intron | 35.0% | |
| AATGGTTAATTTAAGCCGAC+TGG | + | chr7_2:17643903-17643922 | Msa1051110:intron | 35.0% | |
| TTGGGAATGGAATTCTTTGA+AGG | + | chr7_2:17643944-17643963 | Msa1051110:intron | 35.0% | |
| ! | TTGTTGTTAGTCCCAAATAG+TGG | - | chr7_2:17644140-17644159 | None:intergenic | 35.0% |
| CAAAGCATATGAATGTGGAA+TGG | - | chr7_2:17644245-17644264 | None:intergenic | 35.0% | |
| ATCGACAAAGCATATGAATG+TGG | - | chr7_2:17644250-17644269 | None:intergenic | 35.0% | |
| ! | AGATTCGGTTCTTGGAAAAA+AGG | + | chr7_2:17644402-17644421 | Msa1051110:intron | 35.0% |
| TCAACTGCAATAAGACATTC+TGG | - | chr7_2:17644467-17644486 | None:intergenic | 35.0% | |
| TGTCAATATATGATGCTGAC+TGG | + | chr7_2:17644618-17644637 | Msa1051110:intron | 35.0% | |
| ! | GTTGGTAGACGAACAAATAT+TGG | + | chr7_2:17644736-17644755 | Msa1051110:CDS | 35.0% |
| GTTACCAGAATGCGTTAAAA+AGG | + | chr7_2:17644908-17644927 | Msa1051110:intron | 35.0% | |
| ! | TCATCCTTTTTAACGCATTC+TGG | - | chr7_2:17644915-17644934 | None:intergenic | 35.0% |
| GAATGCGTTAAAAAGGATGA+AGG | + | chr7_2:17644915-17644934 | Msa1051110:intron | 35.0% | |
| ! | AGAGTCAATTTAGGACTAGT+GGG | + | chr7_2:17644976-17644995 | Msa1051110:intron | 35.0% |
| CCCATATGCTATCTTGAAAA+AGG | - | chr7_2:17645137-17645156 | None:intergenic | 35.0% | |
| TGAGACATGGAAAACAATGA+GGG | - | chr7_2:17645175-17645194 | None:intergenic | 35.0% | |
| TTGAGACATGGAAAACAATG+AGG | - | chr7_2:17645176-17645195 | None:intergenic | 35.0% | |
| ! | AGATAACGGCGACATATTTA+GGG | - | chr7_2:17645447-17645466 | None:intergenic | 35.0% |
| ACATTGAGCTGAACAGATAA+CGG | - | chr7_2:17645461-17645480 | None:intergenic | 35.0% | |
| TCCAGTTAAATTGGTTGAAC+CGG | - | chr7_2:17645506-17645525 | None:intergenic | 35.0% | |
| CAACCAATTTAACTGGAAAC+GGG | + | chr7_2:17645509-17645528 | Msa1051110:intron | 35.0% | |
| ! | TATTGTTGTTGGATTGAACC+GGG | + | chr7_2:17645559-17645578 | Msa1051110:intron | 35.0% |
| ! | TAAACTGCAGTTGGTTCAAT+CGG | + | chr7_2:17645593-17645612 | Msa1051110:intron | 35.0% |
| ! | TGGTTCAATTGGTTTAACCA+CGG | - | chr7_2:17645699-17645718 | None:intergenic | 35.0% |
| ! | CATAGTTCAACTGGTTCAAT+TGG | - | chr7_2:17645710-17645729 | None:intergenic | 35.0% |
| !! | TGGTTCTAAGGATGCAAAAT+TGG | + | chr7_2:17645762-17645781 | Msa1051110:intron | 35.0% |
| AATCAAGCAATAGCATGTTC+AGG | + | chr7_2:17645873-17645892 | Msa1051110:CDS | 35.0% | |
| ATTCTGAACAAAGTCCAAAG+AGG | + | chr7_2:17645916-17645935 | Msa1051110:CDS | 35.0% | |
| !!! | TATTTTTTGAGGTTGAGCTG+AGG | + | chr7_2:17646003-17646022 | Msa1051110:three_prime_UTR | 35.0% |
| !!! | ATTTTTTGAGGTTGAGCTGA+GGG | + | chr7_2:17646004-17646023 | Msa1051110:three_prime_UTR | 35.0% |
| AAAATGGCTAGGTCTGCTAA+AGG | + | chr7_2:17640410-17640429 | Msa1051110:exon | 40.0% | |
| AGGCCATCAAGATGAAGAAT+TGG | + | chr7_2:17640430-17640449 | Msa1051110:CDS | 40.0% | |
| ! | GGGTATTGTAGAGAGAGAAA+AGG | - | chr7_2:17640536-17640555 | None:intergenic | 40.0% |
| CTGAATGCTTAGAACGATGA+GGG | - | chr7_2:17640718-17640737 | None:intergenic | 40.0% | |
| TCTGAATGCTTAGAACGATG+AGG | - | chr7_2:17640719-17640738 | None:intergenic | 40.0% | |
| ! | GGTTCTGCGTTGACAAAAAT+TGG | + | chr7_2:17641015-17641034 | Msa1051110:intron | 40.0% |
| ! | GTTTGGTTTCACATCTAGAG+GGG | - | chr7_2:17641261-17641280 | None:intergenic | 40.0% |
| TGTGCTTCATAGGTGATGAT+TGG | + | chr7_2:17641332-17641351 | Msa1051110:intron | 40.0% | |
| !!! | TCCTTTTTGTTGGAGGTACT+TGG | + | chr7_2:17641441-17641460 | Msa1051110:intron | 40.0% |
| ACCAAGTACCTCCAACAAAA+AGG | - | chr7_2:17641445-17641464 | None:intergenic | 40.0% | |
| TCCTTATGAAGGATGGAATC+AGG | + | chr7_2:17641608-17641627 | Msa1051110:CDS | 40.0% | |
| TCCTGATTCCATCCTTCATA+AGG | - | chr7_2:17641612-17641631 | None:intergenic | 40.0% | |
| ATACTTCTACGGTCATGCAT+TGG | - | chr7_2:17641704-17641723 | None:intergenic | 40.0% | |
| ! | ACCGTAGAAGTATGCATTTG+TGG | + | chr7_2:17641711-17641730 | Msa1051110:intron | 40.0% |
| CCCACAAATGCATACTTCTA+CGG | - | chr7_2:17641715-17641734 | None:intergenic | 40.0% | |
| ! | CCGTAGAAGTATGCATTTGT+GGG | + | chr7_2:17641712-17641731 | Msa1051110:intron | 40.0% |
| CTCCTATAAGAGGAACTGTT+CGG | + | chr7_2:17641995-17642014 | Msa1051110:intron | 40.0% | |
| ATCCGAACAGTTCCTCTTAT+AGG | - | chr7_2:17642000-17642019 | None:intergenic | 40.0% | |
| ATGCACTTGACATACAATCG+GGG | - | chr7_2:17642385-17642404 | None:intergenic | 40.0% | |
| ! | GAGCCAGTGCTATTATTTCA+AGG | - | chr7_2:17642519-17642538 | None:intergenic | 40.0% |
| ! | CCATTTTGAATAGCTCGAGA+AGG | - | chr7_2:17642618-17642637 | None:intergenic | 40.0% |
| CCTTCTCGAGCTATTCAAAA+TGG | + | chr7_2:17642615-17642634 | Msa1051110:CDS | 40.0% | |
| ATGTTTGATCCGGTTGTTAG+CGG | + | chr7_2:17642789-17642808 | Msa1051110:CDS | 40.0% | |
| ATGGCTTAGCAAACCAAACA+AGG | + | chr7_2:17642887-17642906 | Msa1051110:CDS | 40.0% | |
| ! | AGAAACTCACCTTTGAGAGT+AGG | - | chr7_2:17643000-17643019 | None:intergenic | 40.0% |
| ! | TGTGATAAAGGCGCAATTTG+CGG | - | chr7_2:17643471-17643490 | None:intergenic | 40.0% |
| AATCCTAATTGCAGATGTGC+AGG | - | chr7_2:17643516-17643535 | None:intergenic | 40.0% | |
| TGGAAGAATGAGAATGGGAA+TGG | - | chr7_2:17643712-17643731 | None:intergenic | 40.0% | |
| GTGGAGAAACAGAAGAAACA+TGG | - | chr7_2:17643785-17643804 | None:intergenic | 40.0% | |
| AAAAACCAGAGGAGTAGTAG+TGG | - | chr7_2:17643804-17643823 | None:intergenic | 40.0% | |
| !!! | ACTACTACTCCTCTGGTTTT+TGG | + | chr7_2:17643803-17643822 | Msa1051110:intron | 40.0% |
| ! | TGAGTTTTCTGCGAGAACAA+TGG | + | chr7_2:17643845-17643864 | Msa1051110:intron | 40.0% |
| GCTATCCGCTATAGAAGTTT+CGG | + | chr7_2:17644098-17644117 | Msa1051110:intron | 40.0% | |
| CTATCCGCTATAGAAGTTTC+GGG | + | chr7_2:17644099-17644118 | Msa1051110:intron | 40.0% | |
| TATCCGCTATAGAAGTTTCG+GGG | + | chr7_2:17644100-17644119 | Msa1051110:intron | 40.0% | |
| AAACCCCGAAACTTCTATAG+CGG | - | chr7_2:17644106-17644125 | None:intergenic | 40.0% | |
| AGTAGTTGACAAGACTCAAG+CGG | - | chr7_2:17644284-17644303 | None:intergenic | 40.0% | |
| ! | GGTGCAACAATACATTTTCC+AGG | + | chr7_2:17644544-17644563 | Msa1051110:intron | 40.0% |
| ACCTTTGAGCTATAATGGCA+GGG | - | chr7_2:17644769-17644788 | None:intergenic | 40.0% | |
| AACCTTTGAGCTATAATGGC+AGG | - | chr7_2:17644770-17644789 | None:intergenic | 40.0% | |
| ! | CAGAGTCAATTTAGGACTAG+TGG | + | chr7_2:17644975-17644994 | Msa1051110:intron | 40.0% |
| ! | AATTTAGGACTAGTGGGTGA+TGG | + | chr7_2:17644982-17645001 | Msa1051110:intron | 40.0% |
| ! | GATAACGGCGACATATTTAG+GGG | - | chr7_2:17645446-17645465 | None:intergenic | 40.0% |
| ! | CAGATAACGGCGACATATTT+AGG | - | chr7_2:17645448-17645467 | None:intergenic | 40.0% |
| ! | ATTGTTGTTGGATTGAACCG+GGG | + | chr7_2:17645560-17645579 | Msa1051110:intron | 40.0% |
| TGAAGCAGTTAAACTGCAGT+TGG | + | chr7_2:17645584-17645603 | Msa1051110:intron | 40.0% | |
| ! | TTTGTCATCTAGTTCAACCG+TGG | + | chr7_2:17645679-17645698 | Msa1051110:intron | 40.0% |
| ! | CTTTCGAGTCATAGTTCAAC+TGG | - | chr7_2:17645719-17645738 | None:intergenic | 40.0% |
| CTAAGGATGCAAAATTGGCA+TGG | + | chr7_2:17645767-17645786 | Msa1051110:intron | 40.0% | |
| AGCAATAGCATGTTCAGGAA+TGG | + | chr7_2:17645878-17645897 | Msa1051110:CDS | 40.0% | |
| !! | AGGAATGGATTACTTCAGTG+AGG | + | chr7_2:17645893-17645912 | Msa1051110:CDS | 40.0% |
| ! | TTGTTGTGACTTGGCAGTGA+AGG | + | chr7_2:17640661-17640680 | Msa1051110:intron | 45.0% |
| ATGAACCCATCAGAGGGAAA+AGG | + | chr7_2:17640687-17640706 | Msa1051110:CDS | 45.0% | |
| TGAACCCATCAGAGGGAAAA+GGG | + | chr7_2:17640688-17640707 | Msa1051110:CDS | 45.0% | |
| ! | TTAGCCCTTTTCCCTCTGAT+GGG | - | chr7_2:17640695-17640714 | None:intergenic | 45.0% |
| AAGCCTTCTATCCGAAGTGT+CGG | - | chr7_2:17640914-17640933 | None:intergenic | 45.0% | |
| CATAGACACATGTCAGACAC+CGG | - | chr7_2:17640939-17640958 | None:intergenic | 45.0% | |
| CGACGTGTTAGTGTTGTGTT+CGG | + | chr7_2:17641305-17641324 | Msa1051110:intron | 45.0% | |
| !! | GTTCGGTGTTTGTGCTTCAT+AGG | + | chr7_2:17641322-17641341 | Msa1051110:intron | 45.0% |
| AGCTCCTGTAAGCTAGAATC+CGG | + | chr7_2:17641963-17641982 | Msa1051110:intron | 45.0% | |
| ! | CTTATAGGAGCAAGTTGAGC+CGG | - | chr7_2:17641985-17642004 | None:intergenic | 45.0% |
| ! | GCTCAACTTGCTCCTATAAG+AGG | + | chr7_2:17641985-17642004 | Msa1051110:intron | 45.0% |
| ! | ACAATCGGGGTTAGTGTTGT+TGG | - | chr7_2:17642372-17642391 | None:intergenic | 45.0% |
| ! | GGATCTGTGGTATTTTCGGA+AGG | - | chr7_2:17642597-17642616 | None:intergenic | 45.0% |
| AATAGCTCGAGAAGGATCTG+TGG | - | chr7_2:17642610-17642629 | None:intergenic | 45.0% | |
| CCTTCTGAATAGTTGTGGAG+GGG | - | chr7_2:17642710-17642729 | None:intergenic | 45.0% | |
| CCCTTCTGAATAGTTGTGGA+GGG | - | chr7_2:17642711-17642730 | None:intergenic | 45.0% | |
| CCCTCCACAACTATTCAGAA+GGG | + | chr7_2:17642708-17642727 | Msa1051110:CDS | 45.0% | |
| ACCCTTCTGAATAGTTGTGG+AGG | - | chr7_2:17642712-17642731 | None:intergenic | 45.0% | |
| GCAACCCTTCTGAATAGTTG+TGG | - | chr7_2:17642715-17642734 | None:intergenic | 45.0% | |
| CTACTTCTGTGGATGAACCA+GGG | - | chr7_2:17642740-17642759 | None:intergenic | 45.0% | |
| ACTACTTCTGTGGATGAACC+AGG | - | chr7_2:17642741-17642760 | None:intergenic | 45.0% | |
| AATCGCATTTGCATGGTCAG+GGG | - | chr7_2:17642765-17642784 | None:intergenic | 45.0% | |
| CAATCGCATTTGCATGGTCA+GGG | - | chr7_2:17642766-17642785 | None:intergenic | 45.0% | |
| CATGTCCAATCGCATTTGCA+TGG | - | chr7_2:17642772-17642791 | None:intergenic | 45.0% | |
| GCGATTGGACATGTTTGATC+CGG | + | chr7_2:17642779-17642798 | Msa1051110:CDS | 45.0% | |
| GCCTGTATCTAATCCTGACA+TGG | + | chr7_2:17642842-17642861 | Msa1051110:CDS | 45.0% | |
| GCCATGTCAGGATTAGATAC+AGG | - | chr7_2:17642846-17642865 | None:intergenic | 45.0% | |
| !! | GGTTTGCTAAGCCATACTTG+AGG | - | chr7_2:17642882-17642901 | None:intergenic | 45.0% |
| TCTCAAGTGCCTACTCTCAA+AGG | + | chr7_2:17642988-17643007 | Msa1051110:CDS | 45.0% | |
| TGCGGTATACAACTACGAAG+AGG | - | chr7_2:17643254-17643273 | None:intergenic | 45.0% | |
| ACCGCAGTGTTGTCAAATAG+AGG | + | chr7_2:17643268-17643287 | Msa1051110:intron | 45.0% | |
| GCCTCTATTTGACAACACTG+CGG | - | chr7_2:17643272-17643291 | None:intergenic | 45.0% | |
| TGATCCGCGATTGACAACAT+TGG | + | chr7_2:17643336-17643355 | Msa1051110:intron | 45.0% | |
| AGCACACTATCACAGATTCG+AGG | + | chr7_2:17643395-17643414 | Msa1051110:intron | 45.0% | |
| AAGAAGAGTCGCACGAATCA+GGG | - | chr7_2:17643679-17643698 | None:intergenic | 45.0% | |
| GCACGTGGAAGAATGAGAAT+GGG | - | chr7_2:17643717-17643736 | None:intergenic | 45.0% | |
| TGCACGTGGAAGAATGAGAA+TGG | - | chr7_2:17643718-17643737 | None:intergenic | 45.0% | |
| TTCCACGTGCAAACTGTGAA+GGG | + | chr7_2:17643727-17643746 | Msa1051110:intron | 45.0% | |
| TCAGTTCGCAGGAAGAAGAA+TGG | - | chr7_2:17643756-17643775 | None:intergenic | 45.0% | |
| TTTCTCCACTACTACTCCTC+TGG | + | chr7_2:17643796-17643815 | Msa1051110:intron | 45.0% | |
| CAAAGGAAGCCAAAAACCAG+AGG | - | chr7_2:17643815-17643834 | None:intergenic | 45.0% | |
| AACAATGGCATCCTCCTCAT+CGG | + | chr7_2:17643860-17643879 | Msa1051110:intron | 45.0% | |
| ACTTCAAGGTTGTCACCAGT+CGG | - | chr7_2:17643921-17643940 | None:intergenic | 45.0% | |
| TGACAACCTTGAAGTGGCTT+GGG | + | chr7_2:17643926-17643945 | Msa1051110:intron | 45.0% | |
| TGTCACTCTACGCCACTATT+TGG | + | chr7_2:17644125-17644144 | Msa1051110:intron | 45.0% | |
| GTCACTCTACGCCACTATTT+GGG | + | chr7_2:17644126-17644145 | Msa1051110:intron | 45.0% | |
| CAAGACTCAAGCGGGTAAAA+TGG | - | chr7_2:17644275-17644294 | None:intergenic | 45.0% | |
| GTAGTTGACAAGACTCAAGC+GGG | - | chr7_2:17644283-17644302 | None:intergenic | 45.0% | |
| ! | TGTGCATGAGATTCGGTTCT+TGG | + | chr7_2:17644394-17644413 | Msa1051110:intron | 45.0% |
| ACCTGAAGATTGTAGCGCTT+GGG | - | chr7_2:17644677-17644696 | None:intergenic | 45.0% | |
| ! | TTCCACTGCGACATTAGTCT+GGG | - | chr7_2:17644710-17644729 | None:intergenic | 45.0% |
| TTTCCACTGCGACATTAGTC+TGG | - | chr7_2:17644711-17644730 | None:intergenic | 45.0% | |
| GTCGCAGTGGAAATTGATGT+TGG | + | chr7_2:17644718-17644737 | Msa1051110:CDS | 45.0% | |
| CTTTGAGCTATAATGGCAGG+GGG | - | chr7_2:17644767-17644786 | None:intergenic | 45.0% | |
| CCTTTGAGCTATAATGGCAG+GGG | - | chr7_2:17644768-17644787 | None:intergenic | 45.0% | |
| !! | GCGACATATTTAGGGGTGTT+TGG | - | chr7_2:17645439-17645458 | None:intergenic | 45.0% |
| GTTAAATTGGTTGAACCGGC+CGG | - | chr7_2:17645502-17645521 | None:intergenic | 45.0% | |
| ! | GCCGGTTCAACCAATTTAAC+TGG | + | chr7_2:17645502-17645521 | Msa1051110:intron | 45.0% |
| TGGCCCGTTTCCAGTTAAAT+TGG | - | chr7_2:17645515-17645534 | None:intergenic | 45.0% | |
| CAGTTTAACTGCTTCAACCC+CGG | - | chr7_2:17645580-17645599 | None:intergenic | 45.0% | |
| CTATGACTCGAAAGTCTCAC+CGG | + | chr7_2:17645725-17645744 | Msa1051110:intron | 45.0% | |
| AACCAGAGTGAAGATCGAAC+CGG | - | chr7_2:17645747-17645766 | None:intergenic | 45.0% | |
| !! | CGATCTTCACTCTGGTTCTA+AGG | + | chr7_2:17645750-17645769 | Msa1051110:intron | 45.0% |
| GCTTCTCTTCTGAACCTCTT+TGG | - | chr7_2:17645933-17645952 | None:intergenic | 45.0% | |
| AAAGAGGGAATGGATAGGTC+AGG | + | chr7_2:17646027-17646046 | Msa1051110:three_prime_UTR | 45.0% | |
| !!! | TTAAATATTATTATTTTTTG+AGG | + | chr7_2:17645992-17646011 | Msa1051110:three_prime_UTR | 5.0% |
| ! | TTGTGACTTGGCAGTGAAGG+TGG | + | chr7_2:17640664-17640683 | Msa1051110:intron | 50.0% |
| AAGGTGGATGAACCCATCAG+AGG | + | chr7_2:17640680-17640699 | Msa1051110:CDS | 50.0% | |
| AGGTGGATGAACCCATCAGA+GGG | + | chr7_2:17640681-17640700 | Msa1051110:CDS | 50.0% | |
| ! | GTTAGCCCTTTTCCCTCTGA+TGG | - | chr7_2:17640696-17640715 | None:intergenic | 50.0% |
| !! | TCTATGTGGCACCGACACTT+CGG | + | chr7_2:17640900-17640919 | Msa1051110:intron | 50.0% |
| CTTCGGATAGAAGGCTTGTC+CGG | + | chr7_2:17640917-17640936 | Msa1051110:intron | 50.0% | |
| !! | TGAGCCGGATTCTAGCTTAC+AGG | - | chr7_2:17641970-17641989 | None:intergenic | 50.0% |
| TGGAGGGGTCAGACACTATT+GGG | - | chr7_2:17642695-17642714 | None:intergenic | 50.0% | |
| CCCCTCCACAACTATTCAGA+AGG | + | chr7_2:17642707-17642726 | Msa1051110:CDS | 50.0% | |
| ATTCAGAAGGGTTGCATCCC+TGG | + | chr7_2:17642720-17642739 | Msa1051110:CDS | 50.0% | |
| CCAATCGCATTTGCATGGTC+AGG | - | chr7_2:17642767-17642786 | None:intergenic | 50.0% | |
| CCTGACCATGCAAATGCGAT+TGG | + | chr7_2:17642764-17642783 | Msa1051110:CDS | 50.0% | |
| TTTGATCCGGTTGTTAGCGG+TGG | + | chr7_2:17642792-17642811 | Msa1051110:CDS | 50.0% | |
| ACCATACCACCGCTAACAAC+CGG | - | chr7_2:17642801-17642820 | None:intergenic | 50.0% | |
| TGGAGATTGGAAGCCATGTC+AGG | - | chr7_2:17642858-17642877 | None:intergenic | 50.0% | |
| CCATACTTGAGGCTGGAGAT+TGG | - | chr7_2:17642871-17642890 | None:intergenic | 50.0% | |
| CCAATCTCCAGCCTCAAGTA+TGG | + | chr7_2:17642868-17642887 | Msa1051110:CDS | 50.0% | |
| TGCTAAGCCATACTTGAGGC+TGG | - | chr7_2:17642878-17642897 | None:intergenic | 50.0% | |
| AGATTCGAGGAGCAGCAATG+TGG | + | chr7_2:17643408-17643427 | Msa1051110:intron | 50.0% | |
| TGCAGATGTGCAGGAGCAAT+GGG | - | chr7_2:17643507-17643526 | None:intergenic | 50.0% | |
| TTGCAGATGTGCAGGAGCAA+TGG | - | chr7_2:17643508-17643527 | None:intergenic | 50.0% | |
| GCTCCTGCACATCTGCAATT+AGG | + | chr7_2:17643510-17643529 | Msa1051110:intron | 50.0% | |
| AGAAGAGTCGCACGAATCAG+GGG | - | chr7_2:17643678-17643697 | None:intergenic | 50.0% | |
| GAAGAAGAGTCGCACGAATC+AGG | - | chr7_2:17643680-17643699 | None:intergenic | 50.0% | |
| CTTCCACGTGCAAACTGTGA+AGG | + | chr7_2:17643726-17643745 | Msa1051110:intron | 50.0% | |
| TTCCCTTCACAGTTTGCACG+TGG | - | chr7_2:17643732-17643751 | None:intergenic | 50.0% | |
| ! | TGTTGGTGTTTCCGATGAGG+AGG | - | chr7_2:17643874-17643893 | None:intergenic | 50.0% |
| ! | GGATGTTGGTGTTTCCGATG+AGG | - | chr7_2:17643877-17643896 | None:intergenic | 50.0% |
| GACTGGTGACAACCTTGAAG+TGG | + | chr7_2:17643920-17643939 | Msa1051110:intron | 50.0% | |
| GTGACAACCTTGAAGTGGCT+TGG | + | chr7_2:17643925-17643944 | Msa1051110:intron | 50.0% | |
| ! | ACCTTGAAGTGGCTTGGGAA+TGG | + | chr7_2:17643931-17643950 | Msa1051110:intron | 50.0% |
| TCCATTCCCAAGCCACTTCA+AGG | - | chr7_2:17643935-17643954 | None:intergenic | 50.0% | |
| ACCCAAGCGCTACAATCTTC+AGG | + | chr7_2:17644673-17644692 | Msa1051110:CDS | 50.0% | |
| CACCTGAAGATTGTAGCGCT+TGG | - | chr7_2:17644678-17644697 | None:intergenic | 50.0% | |
| CCCCTGCCATTATAGCTCAA+AGG | + | chr7_2:17644765-17644784 | Msa1051110:CDS | 50.0% | |
| ! | TTAGGACTAGTGGGTGATGG+TGG | + | chr7_2:17644985-17645004 | Msa1051110:intron | 50.0% |
| AAAAACTGAGCTGAACCGGC+CGG | + | chr7_2:17645484-17645503 | Msa1051110:intron | 50.0% | |
| AGGTTGAGCTGAGGGAAAGA+GGG | + | chr7_2:17646012-17646031 | Msa1051110:three_prime_UTR | 50.0% | |
| GAGGGAAAGAGGGAATGGAT+AGG | + | chr7_2:17646022-17646041 | Msa1051110:three_prime_UTR | 50.0% | |
| ! | GCACCGACACTTCGGATAGA+AGG | + | chr7_2:17640908-17640927 | Msa1051110:intron | 55.0% |
| GTGGAGGGGTCAGACACTAT+TGG | - | chr7_2:17642696-17642715 | None:intergenic | 55.0% | |
| GGTCAGGGGAACTACTTCTG+TGG | - | chr7_2:17642751-17642770 | None:intergenic | 55.0% | |
| TCCGGTTGTTAGCGGTGGTA+TGG | + | chr7_2:17642797-17642816 | Msa1051110:CDS | 55.0% | |
| !! | CTACGAAGAGGCACTCCTAC+TGG | - | chr7_2:17643242-17643261 | None:intergenic | 55.0% |
| TCCATTGCGACGCGTTCACT+AGG | + | chr7_2:17643431-17643450 | Msa1051110:intron | 55.0% | |
| ACCTAGTGAACGCGTCGCAA+TGG | - | chr7_2:17643435-17643454 | None:intergenic | 55.0% | |
| GGAGCAATGGGGACGCAATA+AGG | - | chr7_2:17643495-17643514 | None:intergenic | 55.0% | |
| GCAGATGTGCAGGAGCAATG+GGG | - | chr7_2:17643506-17643525 | None:intergenic | 55.0% | |
| GAAGAGTCGCACGAATCAGG+GGG | - | chr7_2:17643677-17643696 | None:intergenic | 55.0% | |
| CATGGGCTTTCTCAGTTCGC+AGG | - | chr7_2:17643767-17643786 | None:intergenic | 55.0% | |
| GTCCCAGACTAATGTCGCAG+TGG | + | chr7_2:17644705-17644724 | Msa1051110:CDS | 55.0% | |
| !! | CACCGGTTCGATCTTCACTC+TGG | + | chr7_2:17645742-17645761 | Msa1051110:intron | 55.0% |
| GAGGTTGAGCTGAGGGAAAG+AGG | + | chr7_2:17646011-17646030 | Msa1051110:three_prime_UTR | 55.0% | |
| GAGCTGAGGGAAAGAGGGAA+TGG | + | chr7_2:17646017-17646036 | Msa1051110:three_prime_UTR | 55.0% | |
| CAGCAGCAGCAGTAGCCAGT+AGG | + | chr7_2:17643224-17643243 | Msa1051110:intron | 60.0% | |
| GACGCGTTCACTAGGTGCGT+CGG | + | chr7_2:17643439-17643458 | Msa1051110:intron | 60.0% | |
| ! | TTCACTAGGTGCGTCGGTCG+TGG | + | chr7_2:17643445-17643464 | Msa1051110:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 17640366 | 17646238 | 17640366 | ID=Msa1051110;Name=Msa1051110 |
| chr7_2 | mRNA | 17640366 | 17646238 | 17640366 | ID=Msa1051110-mRNA-1;Parent=Msa1051110;Name=Msa1051110-mRNA-1;_AED=0.31;_eAED=0.31;_QI=47|0.71|0.62|1|0.42|0.37|8|279|327 |
| chr7_2 | exon | 17640366 | 17640518 | 17640366 | ID=Msa1051110-mRNA-1:exon:3950;Parent=Msa1051110-mRNA-1 |
| chr7_2 | exon | 17640678 | 17640774 | 17640678 | ID=Msa1051110-mRNA-1:exon:3951;Parent=Msa1051110-mRNA-1 |
| chr7_2 | exon | 17641431 | 17641455 | 17641431 | ID=Msa1051110-mRNA-1:exon:3952;Parent=Msa1051110-mRNA-1 |
| chr7_2 | exon | 17641558 | 17641653 | 17641558 | ID=Msa1051110-mRNA-1:exon:3953;Parent=Msa1051110-mRNA-1 |
| chr7_2 | exon | 17642579 | 17642818 | 17642579 | ID=Msa1051110-mRNA-1:exon:3954;Parent=Msa1051110-mRNA-1 |
| chr7_2 | exon | 17642831 | 17643009 | 17642831 | ID=Msa1051110-mRNA-1:exon:3955;Parent=Msa1051110-mRNA-1 |
| chr7_2 | exon | 17644657 | 17644786 | 17644657 | ID=Msa1051110-mRNA-1:exon:3956;Parent=Msa1051110-mRNA-1 |
| chr7_2 | exon | 17645849 | 17646238 | 17645849 | ID=Msa1051110-mRNA-1:exon:3957;Parent=Msa1051110-mRNA-1 |
| chr7_2 | five_prime_UTR | 17640366 | 17640412 | 17640366 | ID=Msa1051110-mRNA-1:five_prime_utr;Parent=Msa1051110-mRNA-1 |
| chr7_2 | CDS | 17640413 | 17640518 | 17640413 | ID=Msa1051110-mRNA-1:cds;Parent=Msa1051110-mRNA-1 |
| chr7_2 | CDS | 17640678 | 17640774 | 17640678 | ID=Msa1051110-mRNA-1:cds;Parent=Msa1051110-mRNA-1 |
| chr7_2 | CDS | 17641431 | 17641455 | 17641431 | ID=Msa1051110-mRNA-1:cds;Parent=Msa1051110-mRNA-1 |
| chr7_2 | CDS | 17641558 | 17641653 | 17641558 | ID=Msa1051110-mRNA-1:cds;Parent=Msa1051110-mRNA-1 |
| chr7_2 | CDS | 17642579 | 17642818 | 17642579 | ID=Msa1051110-mRNA-1:cds;Parent=Msa1051110-mRNA-1 |
| chr7_2 | CDS | 17642831 | 17643009 | 17642831 | ID=Msa1051110-mRNA-1:cds;Parent=Msa1051110-mRNA-1 |
| chr7_2 | CDS | 17644657 | 17644786 | 17644657 | ID=Msa1051110-mRNA-1:cds;Parent=Msa1051110-mRNA-1 |
| chr7_2 | CDS | 17645849 | 17645959 | 17645849 | ID=Msa1051110-mRNA-1:cds;Parent=Msa1051110-mRNA-1 |
| chr7_2 | three_prime_UTR | 17645960 | 17646238 | 17645960 | ID=Msa1051110-mRNA-1:three_prime_utr;Parent=Msa1051110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
