AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0229800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229800 MtrunA17_Chr3g0120841 95.359 237 11 0 6 242 329 565 3.43e-165 468
Msa0229800 MtrunA17_Chr3g0120201 78.723 235 27 1 6 240 53 264 2.02e-132 374
Msa0229800 MtrunA17_Chr2g0290321 45.339 236 104 3 6 238 335 548 1.71e-60 199
Msa0229800 MtrunA17_Chr7g0239471 40.948 232 105 2 6 237 284 483 1.20e-48 166
Msa0229800 MtrunA17_Chr2g0290341 40.928 237 106 6 6 238 297 503 1.08e-43 154
Msa0229800 MtrunA17_Chr3g0120231 37.885 227 117 3 14 238 2 206 5.36e-43 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229800 AT4G16420.3 46.414 237 96 3 6 240 278 485 1.08e-65 211
Msa0229800 AT4G16420.2 46.414 237 96 3 6 240 275 482 1.12e-65 211
Msa0229800 AT4G16420.1 46.414 237 96 3 6 240 279 486 1.14e-65 211
Msa0229800 AT3G07740.2 49.153 236 105 5 6 238 250 473 4.37e-61 199
Msa0229800 AT3G07740.3 49.153 236 105 5 6 238 300 523 2.29e-60 198
Msa0229800 AT3G07740.1 49.153 236 105 5 6 238 321 544 2.82e-60 199
Msa0229800 AT3G07740.4 49.153 236 105 5 6 238 328 551 3.08e-60 199

Find 136 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTTGTACAATACAATTT+TGG 0.127632 2_2:+1616974 None:intergenic
TGGATATGCATCAGATTTAT+TGG 0.206249 2_2:+1610418 None:intergenic
TACATTATTATCAAATAAAA+AGG 0.207582 2_2:-1612202 Msa0229800:five_prime_UTR
TCATACTTGCATATCAAATA+TGG 0.217986 2_2:+1611918 None:intergenic
CAAAAGAATACAAGACTTAA+AGG 0.237764 2_2:-1611693 Msa0229800:intron
CTATATTCCCCAGATAATTT+AGG 0.244656 2_2:+1612402 None:intergenic
CTTTAAGTCTTGTATTCTTT+TGG 0.246239 2_2:+1611694 None:intergenic
GCCCTTGACATGTATGGATT+TGG 0.247889 2_2:-1616040 Msa0229800:five_prime_UTR
GAAAAGAAACCTAAATTATC+TGG 0.248531 2_2:-1612411 Msa0229800:five_prime_UTR
CCTTAACTCCATCATTATTC+TGG 0.272285 2_2:+1614128 None:intergenic
TCACATATTTGAAGCTCTTC+AGG 0.283060 2_2:+1611800 None:intergenic
TACTGCAACAAAGATATTTC+AGG 0.283715 2_2:-1616496 Msa0229800:five_prime_UTR
TATGACATGCTTGTGGAAAA+AGG 0.285605 2_2:-1610359 Msa0229800:CDS
CTAAATTATCTGGGGAATAT+AGG 0.294662 2_2:-1612401 Msa0229800:five_prime_UTR
CCTAGACATTGTTTGATTAG+TGG 0.301162 2_2:+1614304 None:intergenic
TCATGTACAAATTTCAGTTC+TGG 0.305916 2_2:+1617022 None:intergenic
CACAGGATTGTGGCAATAAA+AGG 0.306327 2_2:+1611991 None:intergenic
TTCAGAGTCAGCTCTGCATT+TGG 0.311067 2_2:+1614459 None:intergenic
GTCTTCTAATTATTTCTGTA+TGG 0.313895 2_2:+1610243 None:intergenic
ACATGTATGGATTTGGGAAT+TGG 0.314921 2_2:-1616033 Msa0229800:five_prime_UTR
TGTAACGGTTATAATTTATA+AGG 0.318843 2_2:-1610303 Msa0229800:three_prime_UTR
CAAGGTGACTGTAAAGAAAA+TGG 0.338873 2_2:-1610976 Msa0229800:CDS
TGCTCCGTATTTACTCAAAA+AGG 0.340521 2_2:-1612236 Msa0229800:five_prime_UTR
CCCTTGACATGTATGGATTT+GGG 0.361167 2_2:-1616039 Msa0229800:five_prime_UTR
ATGATGCTGTAGTGCCCTTA+TGG 0.365256 2_2:+1610875 None:intergenic
CAATGATGCTGAGCAAGTTT+TGG 0.365626 2_2:-1612316 Msa0229800:five_prime_UTR
TCTTCCTCTGCACTCCAATC+TGG 0.370485 2_2:+1616211 None:intergenic
CTGTTGTCGTCAGCAGCAAC+GGG 0.372446 2_2:+1616828 None:intergenic
CAATCATCCGTATCGGGTTA+TGG 0.379198 2_2:-1616383 Msa0229800:intron
TTGAAAGCTGTTGGTGAGTT+CGG 0.389481 2_2:-1616905 Msa0229800:five_prime_UTR
CCGTTGCTGCTGACGACAAC+AGG 0.390938 2_2:-1616827 Msa0229800:intron
GATTATGCAATTAGAAATTT+CGG 0.398926 2_2:-1610453 Msa0229800:CDS
GAGAGTTGAAAGCAACGAAA+TGG 0.405204 2_2:-1616883 Msa0229800:five_prime_UTR
GGTGAGAGATATTTCTCAAA+AGG 0.412382 2_2:+1611821 None:intergenic
TTGCAGGAAGCTAGAATTGC+TGG 0.412554 2_2:-1611060 Msa0229800:intron
GCCGGCGCATCCTTGATATC+AGG 0.414004 2_2:+1610850 None:intergenic
CCAGAATAATGATGGAGTTA+AGG 0.420264 2_2:-1614128 Msa0229800:five_prime_UTR
ATCAGTTTATTGAACAAAAG+AGG 0.421769 2_2:-1611014 Msa0229800:CDS
TGTCGTGTTAACTCAGAATC+AGG 0.432258 2_2:+1612058 None:intergenic
GCTACTACCAAGCTCTACTT+TGG 0.434719 2_2:+1610909 None:intergenic
GAGATATTTCTCAAAAGGAT+TGG 0.435153 2_2:+1611826 None:intergenic
TGTAAAGAAAATGGTCAGAT+TGG 0.437324 2_2:-1610967 Msa0229800:CDS
CGCAAGGACACTAGAAGAAT+GGG 0.447327 2_2:-1610812 Msa0229800:CDS
TCTTCTAATTATTTCTGTAT+GGG 0.449429 2_2:+1610244 None:intergenic
AGATATTTCTCAAAAGGATT+GGG 0.455350 2_2:+1611827 None:intergenic
TAGTTTAGATGCAAACAATC+TGG 0.457276 2_2:+1612105 None:intergenic
TCAATTTACTTCCCTCCCTT+CGG 0.457630 2_2:-1617050 Msa0229800:five_prime_UTR
TAAATTCTATCAATCTTGCT+TGG 0.458223 2_2:+1610380 None:intergenic
TTCCGCTTATATGTCCAGAT+TGG 0.463921 2_2:-1616225 Msa0229800:five_prime_UTR
CGCCGAAAAGAAGTGACAAT+AGG 0.467978 2_2:+1610140 None:intergenic
CCTGTTGTCGTCAGCAGCAA+CGG 0.470945 2_2:+1616827 None:intergenic
CCACTCAACACTTTCATAGA+AGG 0.473437 2_2:+1612378 None:intergenic
AGCATCATTTCCTGATATCA+AGG 0.475853 2_2:-1610860 Msa0229800:CDS
CCAACAGCTTTCAACTCGAT+TGG 0.476084 2_2:+1616914 None:intergenic
AAAAGAAACCTAAATTATCT+GGG 0.477686 2_2:-1612410 Msa0229800:five_prime_UTR
TCGCAAGGACACTAGAAGAA+TGG 0.484815 2_2:-1610813 Msa0229800:CDS
GACTTGATTTCCCTTTGCCA+TGG 0.486611 2_2:+1615778 None:intergenic
AGAGTCAGCTCTGCATTTGG+AGG 0.489977 2_2:+1614462 None:intergenic
TCTTTCAAGTTCAATCAAGA+AGG 0.495439 2_2:-1614164 Msa0229800:five_prime_UTR
TAAAAGCAATCATCCGTATC+GGG 0.498853 2_2:-1616389 Msa0229800:five_prime_UTR
GAACTCCTTGCCATGGCAAA+GGG 0.499938 2_2:-1615788 Msa0229800:five_prime_UTR
ACTGCAACAAAGATATTTCA+GGG 0.505834 2_2:-1616495 Msa0229800:five_prime_UTR
TCAAATAGACTTACAGGTAC+AGG 0.507290 2_2:+1615923 None:intergenic
AGAGTTGAAAGCAACGAAAT+GGG 0.508382 2_2:-1616882 Msa0229800:five_prime_UTR
TAGCCCGCGCGGTATCCATA+AGG 0.509942 2_2:-1610890 Msa0229800:CDS
TTCAGTTCTGGTTCAACCGA+AGG 0.511439 2_2:+1617034 None:intergenic
TCCCAAATCCATACATGTCA+AGG 0.513442 2_2:+1616038 None:intergenic
TTAGAAACTTCATCTGCAGC+AGG 0.517986 2_2:-1616636 Msa0229800:intron
TGCATTGAGTGCTTCTCTGT+CGG 0.520843 2_2:-1616430 Msa0229800:five_prime_UTR
GGAAGAGATGTTACTTCTTG+AGG 0.526186 2_2:-1616194 Msa0229800:intron
TCCTGATATCAAGGATGCGC+CGG 0.526937 2_2:-1610851 Msa0229800:CDS
CCACTAATCAAACAATGTCT+AGG 0.527975 2_2:-1614304 Msa0229800:five_prime_UTR
ATCATTATTCTGGCTCACAT+TGG 0.528554 2_2:+1614138 None:intergenic
AGCCCGCGCGGTATCCATAA+GGG 0.533280 2_2:-1610889 Msa0229800:CDS
GATTTCCCTTTGCCATGGCA+AGG 0.533849 2_2:+1615783 None:intergenic
TGTCCTTGCGATATCTTGTA+TGG 0.534456 2_2:+1610825 None:intergenic
ATATGCTTTATATTCTGTAA+CGG 0.536151 2_2:-1610318 Msa0229800:three_prime_UTR
GGAACTCCTTGCCATGGCAA+AGG 0.537689 2_2:-1615789 Msa0229800:five_prime_UTR
ATAAAAGCAATCATCCGTAT+CGG 0.541422 2_2:-1616390 Msa0229800:five_prime_UTR
CTTGGAGAGAACTTGAACAG+TGG 0.542544 2_2:+1610398 None:intergenic
GGGAGGAGCGTGACGCGGCA+CGG 0.542944 2_2:+1616850 None:intergenic
CAGCTCTGAAGAATCTAAGA+AGG 0.544590 2_2:-1614333 Msa0229800:five_prime_UTR
AATGTGAGCCAGAATAATGA+TGG 0.544819 2_2:-1614136 Msa0229800:five_prime_UTR
TTCTGGTTCAACCGAAGGGA+GGG 0.551095 2_2:+1617039 None:intergenic
CTTCTATGAAAGTGTTGAGT+GGG 0.555328 2_2:-1612377 Msa0229800:five_prime_UTR
GCGATATCTTGTATGGCAGC+CGG 0.560280 2_2:+1610832 None:intergenic
AATGGTCAGATTGGAACAAG+TGG 0.563482 2_2:-1610958 Msa0229800:CDS
CCAATCGAGTTGAAAGCTGT+TGG 0.564497 2_2:-1616914 Msa0229800:five_prime_UTR
TCACATATACAGTATTATAG+TGG 0.573431 2_2:+1615960 None:intergenic
TCTCAAGCAGGTCGGAGCAT+CGG 0.574038 2_2:-1612435 Msa0229800:five_prime_UTR
CGCGTAATGTTGAGGTAGTG+TGG 0.574177 2_2:+1610476 None:intergenic
TAGAATTTATGACATGCTTG+TGG 0.575676 2_2:-1610366 Msa0229800:CDS
TTGTTAGTAGAATCTCAAGC+AGG 0.576918 2_2:-1612447 Msa0229800:intron
TCAGTTCTGGTTCAACCGAA+GGG 0.576958 2_2:+1617035 None:intergenic
CTTACAGGTACAGGAAAACA+TGG 0.577655 2_2:+1615932 None:intergenic
AATGATGGAGTTAAGGTGGA+AGG 0.584215 2_2:-1614121 Msa0229800:intron
GAATAATGATGGAGTTAAGG+TGG 0.585712 2_2:-1614125 Msa0229800:five_prime_UTR
TCAAATATGTGAAAAGTACA+AGG 0.591825 2_2:-1611789 Msa0229800:CDS
AATGATGTTGCAGACAACAT+TGG 0.592297 2_2:-1616010 Msa0229800:five_prime_UTR
GTTCATACCATAACCCGATA+CGG 0.593072 2_2:+1616376 None:intergenic
GCAGGAATTGGAATAACTGA+TGG 0.599798 2_2:-1616544 Msa0229800:intron
TTTATTCCATCAGAAAAGAG+AGG 0.602975 2_2:+1614429 None:intergenic
GCATAATCCGCGTAATGTTG+AGG 0.604131 2_2:+1610468 None:intergenic
AGATATAGTACACAGGATTG+TGG 0.608012 2_2:+1611981 None:intergenic
CACACTACCTCAACATTACG+CGG 0.609087 2_2:-1610475 Msa0229800:CDS
GTTCTGGTTCAACCGAAGGG+AGG 0.609392 2_2:+1617038 None:intergenic
CAAAGAGGAACTCCTTGCCA+TGG 0.618565 2_2:-1615795 Msa0229800:five_prime_UTR
CCCAAATCCATACATGTCAA+GGG 0.618928 2_2:+1616039 None:intergenic
CTGCCATACAAGATATCGCA+AGG 0.619678 2_2:-1610828 Msa0229800:CDS
ACTCAGAATCAGGTAATCCG+AGG 0.622251 2_2:+1612068 None:intergenic
CTCAGAATCAGGTAATCCGA+GGG 0.626528 2_2:+1612069 None:intergenic
TGCCCTTATGGATACCGCGC+GGG 0.630704 2_2:+1610887 None:intergenic
AGTGGGTACAATTCTAAGAG+AGG 0.633103 2_2:-1612360 Msa0229800:five_prime_UTR
TATGCAATTAGAAATTTCGG+AGG 0.635449 2_2:-1610450 Msa0229800:CDS
GAATGATGTGTACACAACTC+AGG 0.635896 2_2:+1610165 None:intergenic
ATGGTCAGATTGGAACAAGT+GGG 0.637877 2_2:-1610957 Msa0229800:CDS
AGGACAAAAGAAGCTGAACA+AGG 0.641573 2_2:-1610994 Msa0229800:CDS
TACTTGCATATCAAATATGG+AGG 0.641966 2_2:+1611921 None:intergenic
TTGAAAGCAACGAAATGGGT+CGG 0.642486 2_2:-1616878 Msa0229800:five_prime_UTR
ATGTCCAGATTGGAGTGCAG+AGG 0.642688 2_2:-1616215 Msa0229800:five_prime_UTR
CCTTCTATGAAAGTGTTGAG+TGG 0.642901 2_2:-1612378 Msa0229800:five_prime_UTR
GTTGTCGTCAGCAGCAACGG+GGG 0.644046 2_2:+1616830 None:intergenic
ACAATGTCTAGGCTAACCTC+AGG 0.651755 2_2:-1614293 Msa0229800:intron
TCCTAAAAGATATAGTACAC+AGG 0.655997 2_2:+1611974 None:intergenic
CTCCAATCTGGACATATAAG+CGG 0.659538 2_2:+1616223 None:intergenic
GAGATCAAAATCTTGACACA+CGG 0.665618 2_2:+1616453 None:intergenic
TAACACGACATCTGTCATTG+TGG 0.667073 2_2:-1612045 Msa0229800:five_prime_UTR
AAAGAAACCTAAATTATCTG+GGG 0.667221 2_2:-1612409 Msa0229800:five_prime_UTR
TAGTAGAATCTCAAGCAGGT+CGG 0.674109 2_2:-1612443 Msa0229800:intron
ATGCAATTAGAAATTTCGGA+GGG 0.695473 2_2:-1610449 Msa0229800:CDS
TGTTGTCGTCAGCAGCAACG+GGG 0.702665 2_2:+1616829 None:intergenic
GTGCCCTTATGGATACCGCG+CGG 0.719187 2_2:+1610886 None:intergenic
TCACTCAAAAGAAGAGCACG+AGG 0.725147 2_2:-1611753 Msa0229800:CDS
GTAATGTTGAGGTAGTGTGG+CGG 0.745009 2_2:+1610479 None:intergenic
AAAAGTACAAGGTCTTCACG+CGG 0.746232 2_2:-1611778 Msa0229800:CDS
GAGCTTGGTAGTAGCCCGCG+CGG 0.796024 2_2:-1610901 Msa0229800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTATTTTTAATT+TGG - chr2_2:1614521-1614540 Msa0229800:intron 0.0%
!!! TCAATTTTTTATATAAGTAA+CGG - chr2_2:1610232-1610251 Msa0229800:three_prime_UTR 10.0%
!! TAATTATATAACTATAAAAC+AGG + chr2_2:1610837-1610856 None:intergenic 10.0%
!!! TCATTAATCAAATTAATTTT+TGG - chr2_2:1613370-1613389 Msa0229800:intron 10.0%
!!! TTTTTTTTATAAGTGATAAA+AGG - chr2_2:1613433-1613452 Msa0229800:intron 10.0%
!! TACATTATTATCAAATAAAA+AGG - chr2_2:1614969-1614988 Msa0229800:intron 10.0%
!!! TAAAATATATTTCTTTTCAC+AGG - chr2_2:1610911-1610930 Msa0229800:CDS 15.0%
!!! TTTTTTTTTTGAAAAAGTAG+AGG - chr2_2:1612152-1612171 Msa0229800:five_prime_UTR 15.0%
!! AAAAATAATGTATTCTAGAT+AGG + chr2_2:1612338-1612357 None:intergenic 15.0%
!!! AGAGAATTTTTTTTAGAATT+AGG + chr2_2:1612457-1612476 None:intergenic 15.0%
!! TTTGACAGTAATATAAAAAT+TGG - chr2_2:1613154-1613173 Msa0229800:intron 15.0%
!! TTGACAGTAATATAAAAATT+GGG - chr2_2:1613155-1613174 Msa0229800:intron 15.0%
!! TAATAATAACTACATTCAAT+TGG + chr2_2:1614433-1614452 None:intergenic 15.0%
!! GTTATTATTATTAACCAAAT+CGG - chr2_2:1614443-1614462 Msa0229800:five_prime_UTR 15.0%
!! TTATTATTATTAACCAAATC+GGG - chr2_2:1614444-1614463 Msa0229800:five_prime_UTR 15.0%
!!! TAATTTTGTTTTCATTTGTT+GGG + chr2_2:1615007-1615026 None:intergenic 15.0%
!!! TTAATTTTGTTTTCATTTGT+TGG + chr2_2:1615008-1615027 None:intergenic 15.0%
!!! TATATCTTTTAGGATATATT+TGG - chr2_2:1615206-1615225 Msa0229800:intron 15.0%
!!! TACTTGTACAATACAATTTT+GGG + chr2_2:1610199-1610218 None:intergenic 20.0%
!!! ATACTTGTACAATACAATTT+TGG + chr2_2:1610200-1610219 None:intergenic 20.0%
!! ACTTAGGATTAAGAATTATA+TGG - chr2_2:1610415-1610434 Msa0229800:CDS 20.0%
!! TGGATATTTATATGCTAATT+GGG + chr2_2:1612015-1612034 None:intergenic 20.0%
!! TTGGATATTTATATGCTAAT+TGG + chr2_2:1612016-1612035 None:intergenic 20.0%
!! AAAAGAAATTCATTTGTACA+TGG + chr2_2:1612366-1612385 None:intergenic 20.0%
!!! TTCTAAAAAAAATTCTCTTG+TGG - chr2_2:1612459-1612478 Msa0229800:intron 20.0%
!! ATAATCAGAGTAAATTAGTA+AGG + chr2_2:1612773-1612792 None:intergenic 20.0%
!! TAATGACATTCTATGTTAAT+GGG - chr2_2:1612942-1612961 Msa0229800:intron 20.0%
!!! GTTAATGGGTATAATTTATA+CGG - chr2_2:1612956-1612975 Msa0229800:intron 20.0%
!!! TTAATGGGTATAATTTATAC+GGG - chr2_2:1612957-1612976 Msa0229800:intron 20.0%
!! AATATAAAAATTGGGTAGTT+TGG - chr2_2:1613163-1613182 Msa0229800:intron 20.0%
!! ATATAAAAATTGGGTAGTTT+GGG - chr2_2:1613164-1613183 Msa0229800:intron 20.0%
!!! TTTTATCATAGTAGTACAAA+TGG - chr2_2:1613289-1613308 Msa0229800:intron 20.0%
!! TTTATCATAGTAGTACAAAT+GGG - chr2_2:1613290-1613309 Msa0229800:intron 20.0%
!! TTATTGTATCACTATAGTTA+AGG + chr2_2:1613613-1613632 None:intergenic 20.0%
!! ATAAAACTGTATAACAAGTT+GGG + chr2_2:1613745-1613764 None:intergenic 20.0%
!! TATAAAACTGTATAACAAGT+TGG + chr2_2:1613746-1613765 None:intergenic 20.0%
!!! TTGTTTTTTCCTTGAATTAT+TGG - chr2_2:1613976-1613995 Msa0229800:intron 20.0%
!!! TGTTTTTTCCTTGAATTATT+GGG - chr2_2:1613977-1613996 Msa0229800:intron 20.0%
!! TTGTATCCATATTTGAATTT+GGG - chr2_2:1614028-1614047 Msa0229800:intron 20.0%
!!! TTCAGATATTTTCCATTTAT+TGG - chr2_2:1614330-1614349 Msa0229800:five_prime_UTR 20.0%
!!! TCAGATATTTTCCATTTATT+GGG - chr2_2:1614331-1614350 Msa0229800:five_prime_UTR 20.0%
!! AAAAGAAACCTAAATTATCT+GGG - chr2_2:1614761-1614780 Msa0229800:intron 20.0%
!! CAAAATTAACCATCTAAAAA+TGG - chr2_2:1615019-1615038 Msa0229800:intron 20.0%
!!! TTATTTCCTCTAGTTTATAA+AGG - chr2_2:1615560-1615579 Msa0229800:intron 20.0%
!!! ATTTCTTTATTAGCTTTGAT+TGG - chr2_2:1616480-1616499 Msa0229800:five_prime_UTR 20.0%
!!! TTGGCCTTTTAATTTTATTT+TGG - chr2_2:1616499-1616518 Msa0229800:five_prime_UTR 20.0%
!! CGTTCCAAAATAAAATTAAA+AGG + chr2_2:1616506-1616525 None:intergenic 20.0%
!!! TTTAATTTTATTTTGGAACG+AGG - chr2_2:1616506-1616525 Msa0229800:five_prime_UTR 20.0%
!! GATTATGCAATTAGAAATTT+CGG - chr2_2:1616718-1616737 Msa0229800:intron 20.0%
!! ATATGCTTTATATTCTGTAA+CGG - chr2_2:1616853-1616872 Msa0229800:five_prime_UTR 20.0%
!! TGTAACGGTTATAATTTATA+AGG - chr2_2:1616868-1616887 Msa0229800:five_prime_UTR 20.0%
!!! TCTTCTAATTATTTCTGTAT+GGG + chr2_2:1616930-1616949 None:intergenic 20.0%
! ATAATTCGATATTTCGACTT+AGG - chr2_2:1610399-1610418 Msa0229800:CDS 25.0%
!! TTTTAGATCCAAGAGAAAAA+AGG - chr2_2:1610492-1610511 Msa0229800:CDS 25.0%
!! TATTATTTTCTAAATGTCGC+AGG - chr2_2:1610609-1610628 Msa0229800:intron 25.0%
! TCACATATACAGTATTATAG+TGG + chr2_2:1611214-1611233 None:intergenic 25.0%
!!! ATAGGATTTGTCTCATTTTT+CGG - chr2_2:1611346-1611365 Msa0229800:intron 25.0%
!! TAGATTTTTCATGCTTGAAT+TGG - chr2_2:1611457-1611476 Msa0229800:intron 25.0%
!! TTTTCATTTCATCAAAGAGA+AGG + chr2_2:1611718-1611737 None:intergenic 25.0%
! AAAGAAAAAAAATCAAGCCT+TGG + chr2_2:1611882-1611901 None:intergenic 25.0%
!!! AGGCTTGATTTTTTTTCTTT+AGG - chr2_2:1611882-1611901 Msa0229800:CDS 25.0%
! TTGGAAAAGTAAGAAACAAA+AGG + chr2_2:1611925-1611944 None:intergenic 25.0%
! TTAAAGATAGCTTCATATCT+TGG + chr2_2:1611944-1611963 None:intergenic 25.0%
!! TATCTCTTTTGTAATCATTG+TGG + chr2_2:1612092-1612111 None:intergenic 25.0%
!!! TTTTTTGAAAAAGTAGAGGT+TGG - chr2_2:1612156-1612175 Msa0229800:five_prime_UTR 25.0%
! TTGGAAAGTTTGGTTATTAA+AGG - chr2_2:1612227-1612246 Msa0229800:five_prime_UTR 25.0%
! TGGAAAGTTTGGTTATTAAA+GGG - chr2_2:1612228-1612247 Msa0229800:five_prime_UTR 25.0%
! TAGATTATAGATGATCCAAA+GGG + chr2_2:1612548-1612567 None:intergenic 25.0%
! ATAGATTATAGATGATCCAA+AGG + chr2_2:1612549-1612568 None:intergenic 25.0%
! GTAATGACATTCTATGTTAA+TGG - chr2_2:1612941-1612960 Msa0229800:intron 25.0%
! TTTCATTAAATTTGTCTGTG+AGG - chr2_2:1613258-1613277 Msa0229800:intron 25.0%
! TTCATTAAATTTGTCTGTGA+GGG - chr2_2:1613259-1613278 Msa0229800:intron 25.0%
! TTTGATTAATGAAAGATCAG+TGG + chr2_2:1613362-1613381 None:intergenic 25.0%
! ATCTTTAACATACCTGATAA+AGG - chr2_2:1613396-1613415 Msa0229800:intron 25.0%
! TCTTTAACATACCTGATAAA+GGG - chr2_2:1613397-1613416 Msa0229800:intron 25.0%
! AAAATAGTAAACCCTTTATC+AGG + chr2_2:1613411-1613430 None:intergenic 25.0%
! CTATAGTGATACAATAATTG+TGG - chr2_2:1613616-1613635 Msa0229800:intron 25.0%
!!! GATTAGCTTTTTAACAAGTT+GGG + chr2_2:1613794-1613813 None:intergenic 25.0%
!!! TGATTAGCTTTTTAACAAGT+TGG + chr2_2:1613795-1613814 None:intergenic 25.0%
! ATAAACATATAACAGGAGTA+GGG + chr2_2:1613819-1613838 None:intergenic 25.0%
! AATAAACATATAACAGGAGT+AGG + chr2_2:1613820-1613839 None:intergenic 25.0%
! CCTCAAAATAAACATATAAC+AGG + chr2_2:1613826-1613845 None:intergenic 25.0%
!!! CCTGTTATATGTTTATTTTG+AGG - chr2_2:1613823-1613842 Msa0229800:intron 25.0%
! TCTCAGCTATTTATTATATC+CGG - chr2_2:1613847-1613866 Msa0229800:intron 25.0%
! GTTGTATCCATATTTGAATT+TGG - chr2_2:1614027-1614046 Msa0229800:intron 25.0%
! ATCTTATAACCGGAATTTAT+GGG + chr2_2:1614281-1614300 None:intergenic 25.0%
! GAAAAGAAACCTAAATTATC+TGG - chr2_2:1614760-1614779 Msa0229800:intron 25.0%
! AAAGAAACCTAAATTATCTG+GGG - chr2_2:1614762-1614781 Msa0229800:intron 25.0%
!!! CATACCTTTTTGAGTAAATA+CGG + chr2_2:1614942-1614961 None:intergenic 25.0%
! TCATACTTGCATATCAAATA+TGG + chr2_2:1615256-1615275 None:intergenic 25.0%
! AGATATTTCTCAAAAGGATT+GGG + chr2_2:1615347-1615366 None:intergenic 25.0%
!! TCAAATATGTGAAAAGTACA+AGG - chr2_2:1615382-1615401 Msa0229800:intron 25.0%
!!! CTTTAAGTCTTGTATTCTTT+TGG + chr2_2:1615480-1615499 None:intergenic 25.0%
! CAAAAGAATACAAGACTTAA+AGG - chr2_2:1615478-1615497 Msa0229800:intron 25.0%
!! AATTTGATTCGTCAATATAG+AGG - chr2_2:1615799-1615818 Msa0229800:five_prime_UTR 25.0%
!!! CTACAAGTTTTGATTAGTTT+AGG - chr2_2:1615924-1615943 Msa0229800:intron 25.0%
!!! AAGTTTTGATTAGTTTAGGA+GGG - chr2_2:1615928-1615947 Msa0229800:intron 25.0%
! ATCAGTTTATTGAACAAAAG+AGG - chr2_2:1616157-1616176 Msa0229800:intron 25.0%
!! TGAAGTACTAAAAAAACCAA+GGG + chr2_2:1616441-1616460 None:intergenic 25.0%
!! ATGAAGTACTAAAAAAACCA+AGG + chr2_2:1616442-1616461 None:intergenic 25.0%
! TAAATTCTATCAATCTTGCT+TGG + chr2_2:1616794-1616813 None:intergenic 25.0%
!!! GTCTTCTAATTATTTCTGTA+TGG + chr2_2:1616931-1616950 None:intergenic 25.0%
!!! TTATCTCAGTTCTTATTTTC+TGG + chr2_2:1616972-1616991 None:intergenic 25.0%
TCATGTACAAATTTCAGTTC+TGG + chr2_2:1610152-1610171 None:intergenic 30.0%
!!! TAAAGCAACCTTTTTTCTCT+TGG + chr2_2:1610503-1610522 None:intergenic 30.0%
TACTGCAACAAAGATATTTC+AGG - chr2_2:1610675-1610694 Msa0229800:intron 30.0%
ACTGCAACAAAGATATTTCA+GGG - chr2_2:1610676-1610695 Msa0229800:intron 30.0%
ATAAAAGCAATCATCCGTAT+CGG - chr2_2:1610781-1610800 Msa0229800:CDS 30.0%
AACAACATTTAACATGTAGC+AGG + chr2_2:1611048-1611067 None:intergenic 30.0%
!! TAACAAGCTTGTTTCGTTTT+AGG - chr2_2:1611109-1611128 Msa0229800:intron 30.0%
TTGTATGTTGATGTTCACAT+AGG - chr2_2:1611328-1611347 Msa0229800:intron 30.0%
!! TAGGATTTGTCTCATTTTTC+GGG - chr2_2:1611347-1611366 Msa0229800:intron 30.0%
AAGGGAAATCAAGTCAAAAA+AGG - chr2_2:1611401-1611420 Msa0229800:intron 30.0%
TAAATTCTAGGCAATGTGTA+AGG - chr2_2:1611779-1611798 Msa0229800:CDS 30.0%
AAAAAGTTGCAAAGTTACAG+AGG + chr2_2:1611830-1611849 None:intergenic 30.0%
AACCAAACTTTCCAAAAACT+GGG + chr2_2:1612222-1612241 None:intergenic 30.0%
TAACCAAACTTTCCAAAAAC+TGG + chr2_2:1612223-1612242 None:intergenic 30.0%
!!! CTGTCTTGTTTTTAAGTGTT+GGG - chr2_2:1612571-1612590 Msa0229800:intron 30.0%
!!! TGTCTTGTTTTTAAGTGTTG+GGG - chr2_2:1612572-1612591 Msa0229800:intron 30.0%
! TTTTGCAATGTCAAGTTTCA+TGG - chr2_2:1612630-1612649 Msa0229800:intron 30.0%
AGGAAATTCTGCATGAAAAA+CGG + chr2_2:1612692-1612711 None:intergenic 30.0%
TTTATTCCATCAGAAAAGAG+AGG + chr2_2:1612745-1612764 None:intergenic 30.0%
CATAGAATGTCATTACGAAA+TGG + chr2_2:1612937-1612956 None:intergenic 30.0%
!! TCTTTCAAGTTCAATCAAGA+AGG - chr2_2:1613007-1613026 Msa0229800:intron 30.0%
CTACTTCAGCAACAAAATAA+GGG + chr2_2:1613108-1613127 None:intergenic 30.0%
! AGGTTTACTATGATTGCTTT+TGG - chr2_2:1613453-1613472 Msa0229800:intron 30.0%
!!! TTGCTTTTGGAATTTAATCC+TGG - chr2_2:1613466-1613485 Msa0229800:intron 30.0%
ATTTAATCCTGGACAAACTA+TGG - chr2_2:1613477-1613496 Msa0229800:intron 30.0%
TTTAATCCTGGACAAACTAT+GGG - chr2_2:1613478-1613497 Msa0229800:intron 30.0%
TTATTACAAACACATAGCCT+CGG - chr2_2:1613512-1613531 Msa0229800:intron 30.0%
CATACAACAAGGAATGTATA+TGG - chr2_2:1613669-1613688 Msa0229800:intron 30.0%
TGTTTAAGAAAAGATCCAAC+AGG + chr2_2:1613907-1613926 None:intergenic 30.0%
AATATGGATACAACGTTGAA+GGG + chr2_2:1614021-1614040 None:intergenic 30.0%
AAATATGGATACAACGTTGA+AGG + chr2_2:1614022-1614041 None:intergenic 30.0%
ATCCATATTTGAATTTGGGT+TGG - chr2_2:1614032-1614051 Msa0229800:intron 30.0%
! TCCATATTTGAATTTGGGTT+GGG - chr2_2:1614033-1614052 Msa0229800:intron 30.0%
GCTCAAGTCAAATATAAAGA+TGG + chr2_2:1614250-1614269 None:intergenic 30.0%
CCTAAAAATCCCATAAATTC+CGG - chr2_2:1614269-1614288 Msa0229800:intron 30.0%
CATCTTATAACCGGAATTTA+TGG + chr2_2:1614282-1614301 None:intergenic 30.0%
AAGTCGGTATGAAAGATATT+TGG - chr2_2:1614364-1614383 Msa0229800:intron 30.0%
! GTATGAAAGATATTTGGAGT+TGG - chr2_2:1614370-1614389 Msa0229800:intron 30.0%
TAACTACATTCAATTGGAGT+TGG + chr2_2:1614427-1614446 None:intergenic 30.0%
TTGTCATATGCTTACTAAAC+CGG - chr2_2:1614647-1614666 Msa0229800:intron 30.0%
ATGTGTGTTCTCTAATTTAC+CGG + chr2_2:1614669-1614688 None:intergenic 30.0%
CTATATTCCCCAGATAATTT+AGG + chr2_2:1614772-1614791 None:intergenic 30.0%
CTAAATTATCTGGGGAATAT+AGG - chr2_2:1614770-1614789 Msa0229800:intron 30.0%
! TTTGGCAGAAATGGAATTTT+TGG - chr2_2:1614873-1614892 Msa0229800:intron 30.0%
CGTATTTACTCAAAAAGGTA+TGG - chr2_2:1614940-1614959 Msa0229800:intron 30.0%
TAACCATCTAAAAATGGTCT+TGG - chr2_2:1615025-1615044 Msa0229800:intron 30.0%
TAGTTTAGATGCAAACAATC+TGG + chr2_2:1615069-1615088 None:intergenic 30.0%
! TCCTGTGTACTATATCTTTT+AGG - chr2_2:1615196-1615215 Msa0229800:intron 30.0%
TCCTAAAAGATATAGTACAC+AGG + chr2_2:1615200-1615219 None:intergenic 30.0%
TACTTGCATATCAAATATGG+AGG + chr2_2:1615253-1615272 None:intergenic 30.0%
CAAGTATGAAAAATCTTGAC+AGG - chr2_2:1615267-1615286 Msa0229800:intron 30.0%
GAGATATTTCTCAAAAGGAT+TGG + chr2_2:1615348-1615367 None:intergenic 30.0%
AGTCATCCTTTATAAACTAG+AGG + chr2_2:1615569-1615588 None:intergenic 30.0%
! TCTAGTTTATAAAGGATGAC+TGG - chr2_2:1615568-1615587 Msa0229800:intron 30.0%
CTAGTTTATAAAGGATGACT+GGG - chr2_2:1615569-1615588 Msa0229800:intron 30.0%
TAGTTTATAAAGGATGACTG+GGG - chr2_2:1615570-1615589 Msa0229800:intron 30.0%
!! AACATACTACTTTTCAGTTG+AGG + chr2_2:1615676-1615695 None:intergenic 30.0%
! TTTTCTATGGGAAGTTCTAT+GGG + chr2_2:1615734-1615753 None:intergenic 30.0%
! TTTTTCTATGGGAAGTTCTA+TGG + chr2_2:1615735-1615754 None:intergenic 30.0%
ATAGAACTTCCCATAGAAAA+AGG - chr2_2:1615734-1615753 Msa0229800:intron 30.0%
! GTAACTCAACCTTTTTCTAT+GGG + chr2_2:1615746-1615765 None:intergenic 30.0%
! AGTAACTCAACCTTTTTCTA+TGG + chr2_2:1615747-1615766 None:intergenic 30.0%
ACTAATCAAAACTTGTAGAC+TGG + chr2_2:1615922-1615941 None:intergenic 30.0%
!!! CAAGTTTTGATTAGTTTAGG+AGG - chr2_2:1615927-1615946 Msa0229800:intron 30.0%
!!! AGTTTTGATTAGTTTAGGAG+GGG - chr2_2:1615929-1615948 Msa0229800:intron 30.0%
TGTAAAGAAAATGGTCAGAT+TGG - chr2_2:1616204-1616223 Msa0229800:five_prime_UTR 30.0%
! AGCTCTACTTTGGAAAAATT+TGG + chr2_2:1616255-1616274 None:intergenic 30.0%
! AATTTTTCCAAAGTAGAGCT+TGG - chr2_2:1616255-1616274 Msa0229800:intron 30.0%
TATGCAATTAGAAATTTCGG+AGG - chr2_2:1616721-1616740 Msa0229800:intron 30.0%
ATGCAATTAGAAATTTCGGA+GGG - chr2_2:1616722-1616741 Msa0229800:intron 30.0%
TGGATATGCATCAGATTTAT+TGG + chr2_2:1616756-1616775 None:intergenic 30.0%
TAGAATTTATGACATGCTTG+TGG - chr2_2:1616805-1616824 Msa0229800:intron 30.0%
!!! TCAGTTCTTATTTTCTGGTT+AGG + chr2_2:1616967-1616986 None:intergenic 30.0%
!! ATCCTATTGTCACTTCTTTT+CGG - chr2_2:1617029-1617048 Msa0229800:five_prime_UTR 30.0%
AGAGTTGAAAGCAACGAAAT+GGG - chr2_2:1610289-1610308 Msa0229800:three_prime_UTR 35.0%
TTTCTAAATGTCGCAGGAAT+TGG - chr2_2:1610615-1610634 Msa0229800:intron 35.0%
GAGATCAAAATCTTGACACA+CGG + chr2_2:1610721-1610740 None:intergenic 35.0%
!! TACGGATGATTGCTTTTATG+AGG + chr2_2:1610780-1610799 None:intergenic 35.0%
TAAAAGCAATCATCCGTATC+GGG - chr2_2:1610782-1610801 Msa0229800:CDS 35.0%
GATTCATTATTCATCCATGC+TGG + chr2_2:1610872-1610891 None:intergenic 35.0%
ACATGTATGGATTTGGGAAT+TGG - chr2_2:1611138-1611157 Msa0229800:intron 35.0%
AATGATGTTGCAGACAACAT+TGG - chr2_2:1611161-1611180 Msa0229800:intron 35.0%
TCAAATAGACTTACAGGTAC+AGG + chr2_2:1611251-1611270 None:intergenic 35.0%
GTGTTGTCAAATAGACTTAC+AGG + chr2_2:1611257-1611276 None:intergenic 35.0%
!!! TTTTTCGGGAAAGAACAAAG+AGG - chr2_2:1611361-1611380 Msa0229800:intron 35.0%
! TAGCATGTCTTTAGGTTCAT+CGG + chr2_2:1611497-1611516 None:intergenic 35.0%
AAGATGTATTCACCAAGTCT+TGG + chr2_2:1611640-1611659 None:intergenic 35.0%
AAATGTCAACTCAAATGACC+AGG + chr2_2:1611671-1611690 None:intergenic 35.0%
!!! GGTCATTTGAGTTGACATTT+TGG - chr2_2:1611671-1611690 Msa0229800:intron 35.0%
!! CATTTTGGTAGTTATGTCTC+TGG - chr2_2:1611686-1611705 Msa0229800:intron 35.0%
CGCACAGAACATTAAATTCT+AGG - chr2_2:1611767-1611786 Msa0229800:CDS 35.0%
AAAAAATCAAGCCTTGGCAT+TGG + chr2_2:1611876-1611895 None:intergenic 35.0%
TGAAAGACATTGGAATACAG+TGG + chr2_2:1612048-1612067 None:intergenic 35.0%
GTATTCCAATGTCTTTCACA+AGG - chr2_2:1612050-1612069 Msa0229800:five_prime_UTR 35.0%
ATTCACCTTGTGAAAGACAT+TGG + chr2_2:1612058-1612077 None:intergenic 35.0%
GACTGCGTTTGTAAAATCTA+AGG - chr2_2:1612485-1612504 Msa0229800:intron 35.0%
!!! CTAACTTGTGCTTGTTTTAC+TGG - chr2_2:1612516-1612535 Msa0229800:intron 35.0%
CCAACACTTAAAAACAAGAC+AGG + chr2_2:1612573-1612592 None:intergenic 35.0%
!!! CCTGTCTTGTTTTTAAGTGT+TGG - chr2_2:1612570-1612589 Msa0229800:intron 35.0%
AAAATGCAAACAACAAACCG+GGG + chr2_2:1612614-1612633 None:intergenic 35.0%
CAAAATGCAAACAACAAACC+GGG + chr2_2:1612615-1612634 None:intergenic 35.0%
GCAAAATGCAAACAACAAAC+CGG + chr2_2:1612616-1612635 None:intergenic 35.0%
CCTAGACATTGTTTGATTAG+TGG + chr2_2:1612870-1612889 None:intergenic 35.0%
CCACTAATCAAACAATGTCT+AGG - chr2_2:1612867-1612886 Msa0229800:intron 35.0%
!! ATCATTATTCTGGCTCACAT+TGG + chr2_2:1613036-1613055 None:intergenic 35.0%
AATGTGAGCCAGAATAATGA+TGG - chr2_2:1613035-1613054 Msa0229800:intron 35.0%
CCTTAACTCCATCATTATTC+TGG + chr2_2:1613046-1613065 None:intergenic 35.0%
! CCAGAATAATGATGGAGTTA+AGG - chr2_2:1613043-1613062 Msa0229800:intron 35.0%
! GAATAATGATGGAGTTAAGG+TGG - chr2_2:1613046-1613065 Msa0229800:intron 35.0%
TTCAGCAACAAAATAAGGGT+CGG + chr2_2:1613104-1613123 None:intergenic 35.0%
CCTACTTCAGCAACAAAATA+AGG + chr2_2:1613109-1613128 None:intergenic 35.0%
!!! CCTTATTTTGTTGCTGAAGT+AGG - chr2_2:1613106-1613125 Msa0229800:intron 35.0%
GAGGCTATGTGTTTGTAATA+AGG + chr2_2:1613513-1613532 None:intergenic 35.0%
TATTACAAACACATAGCCTC+GGG - chr2_2:1613513-1613532 Msa0229800:intron 35.0%
! AGGAAATCTCTAAAGACTGT+AGG + chr2_2:1613593-1613612 None:intergenic 35.0%
TGCAATACAAAGTAGTGCAA+AGG - chr2_2:1613708-1613727 Msa0229800:intron 35.0%
TGGGTATGATTAACATCTTG+AGG + chr2_2:1613775-1613794 None:intergenic 35.0%
CCTATTTCAACGCACAAATT+CGG - chr2_2:1614056-1614075 Msa0229800:intron 35.0%
TCTCACATTGAATGTGGATA+TGG + chr2_2:1614127-1614146 None:intergenic 35.0%
TGAGAATCTCACATTGAATG+TGG + chr2_2:1614133-1614152 None:intergenic 35.0%
ACGATTAACCTAGACCTATT+CGG + chr2_2:1614222-1614241 None:intergenic 35.0%
! CCGGAATTTATGGGATTTTT+AGG + chr2_2:1614272-1614291 None:intergenic 35.0%
GACATCTCTCATCTTATAAC+CGG + chr2_2:1614291-1614310 None:intergenic 35.0%
!! TATCTTTCATACCGACTTCT+GGG + chr2_2:1614362-1614381 None:intergenic 35.0%
!! ATATCTTTCATACCGACTTC+TGG + chr2_2:1614363-1614382 None:intergenic 35.0%
! TGAAAGATATTTGGAGTTGG+AGG - chr2_2:1614373-1614392 Msa0229800:intron 35.0%
TGCTAACAGTAATACACACT+TGG - chr2_2:1614548-1614567 Msa0229800:intron 35.0%
GCTCTTAACACAAATAGTTC+AGG - chr2_2:1614570-1614589 Msa0229800:intron 35.0%
TTGTTAGTAGAATCTCAAGC+AGG - chr2_2:1614724-1614743 Msa0229800:intron 35.0%
!! CTTCTATGAAAGTGTTGAGT+GGG - chr2_2:1614794-1614813 Msa0229800:intron 35.0%
TGCTCCGTATTTACTCAAAA+AGG - chr2_2:1614935-1614954 Msa0229800:intron 35.0%
!! CTTCCAAGACCATTTTTAGA+TGG + chr2_2:1615031-1615050 None:intergenic 35.0%
!!! CTAGTTTTAAGCTTTTCCCT+CGG - chr2_2:1615086-1615105 Msa0229800:intron 35.0%
AGATATAGTACACAGGATTG+TGG + chr2_2:1615193-1615212 None:intergenic 35.0%
GGTGAGAGATATTTCTCAAA+AGG + chr2_2:1615353-1615372 None:intergenic 35.0%
! TCACATATTTGAAGCTCTTC+AGG + chr2_2:1615374-1615393 None:intergenic 35.0%
! CTTGTATTCTTTTGGCAAGT+CGG + chr2_2:1615472-1615491 None:intergenic 35.0%
!! AGGAATTCTGTTTCAAGTTC+AGG + chr2_2:1615607-1615626 None:intergenic 35.0%
!! TACTACTTTTCAGTTGAGGT+AGG + chr2_2:1615672-1615691 None:intergenic 35.0%
TTTCTATGGGAAGTTCTATG+GGG + chr2_2:1615733-1615752 None:intergenic 35.0%
GCGATTGATAAAACGAAAAC+TGG + chr2_2:1615863-1615882 None:intergenic 35.0%
AATCAAAACTTGTAGACTGG+TGG + chr2_2:1615919-1615938 None:intergenic 35.0%
!!! GTTTTGATTAGTTTAGGAGG+GGG - chr2_2:1615930-1615949 Msa0229800:intron 35.0%
TTCTACACATGACCAATAGT+TGG - chr2_2:1615985-1616004 Msa0229800:five_prime_UTR 35.0%
! TCTATCAAAGTGTGCTGATA+CGG - chr2_2:1616066-1616085 Msa0229800:intron 35.0%
CAAGACATTGCAAATGGAAA+TGG + chr2_2:1616094-1616113 None:intergenic 35.0%
CAAGGTGACTGTAAAGAAAA+TGG - chr2_2:1616195-1616214 Msa0229800:five_prime_UTR 35.0%
AGCATCATTTCCTGATATCA+AGG - chr2_2:1616311-1616330 Msa0229800:intron 35.0%
! TGGGATATCAGTGATTTTGA+TGG - chr2_2:1616378-1616397 Msa0229800:intron 35.0%
!! GGGATATCAGTGATTTTGAT+GGG - chr2_2:1616379-1616398 Msa0229800:intron 35.0%
!! GGATATCAGTGATTTTGATG+GGG - chr2_2:1616380-1616399 Msa0229800:intron 35.0%
! TGTAAGAGATTTTTCTCCCT+TGG - chr2_2:1616422-1616441 Msa0229800:five_prime_UTR 35.0%
AAAAAAATCCCACCATTGTC+AGG + chr2_2:1616562-1616581 None:intergenic 35.0%
!!! ATGGTGGGATTTTTTTGCAA+TGG - chr2_2:1616566-1616585 Msa0229800:intron 35.0%
! TCTGACATTGATTAACATGC+AGG - chr2_2:1616637-1616656 Msa0229800:five_prime_UTR 35.0%
TATGACATGCTTGTGGAAAA+AGG - chr2_2:1616812-1616831 Msa0229800:intron 35.0%
TCAATTTACTTCCCTCCCTT+CGG - chr2_2:1610121-1610140 Msa0229800:three_prime_UTR 40.0%
! TTGAAAGCTGTTGGTGAGTT+CGG - chr2_2:1610266-1610285 Msa0229800:three_prime_UTR 40.0%
GAGAGTTGAAAGCAACGAAA+TGG - chr2_2:1610288-1610307 Msa0229800:three_prime_UTR 40.0%
TTGAAAGCAACGAAATGGGT+CGG - chr2_2:1610293-1610312 Msa0229800:three_prime_UTR 40.0%
TTAGAAACTTCATCTGCAGC+AGG - chr2_2:1610535-1610554 Msa0229800:intron 40.0%
GCAGGAATTGGAATAACTGA+TGG - chr2_2:1610627-1610646 Msa0229800:intron 40.0%
GTTCATACCATAACCCGATA+CGG + chr2_2:1610798-1610817 None:intergenic 40.0%
AACAGGAACAGCTGAAAGAA+GGG + chr2_2:1610820-1610839 None:intergenic 40.0%
AAACAGGAACAGCTGAAAGA+AGG + chr2_2:1610821-1610840 None:intergenic 40.0%
TATGAATGAAGCTTCCAGCA+TGG - chr2_2:1610855-1610874 Msa0229800:CDS 40.0%
TTCCGCTTATATGTCCAGAT+TGG - chr2_2:1610946-1610965 Msa0229800:CDS 40.0%
CTCCAATCTGGACATATAAG+CGG + chr2_2:1610951-1610970 None:intergenic 40.0%
! GGAAGAGATGTTACTTCTTG+AGG - chr2_2:1610977-1610996 Msa0229800:CDS 40.0%
! TTTTAGGCCCTTGACATGTA+TGG - chr2_2:1611125-1611144 Msa0229800:intron 40.0%
CCCAAATCCATACATGTCAA+GGG + chr2_2:1611135-1611154 None:intergenic 40.0%
CCCTTGACATGTATGGATTT+GGG - chr2_2:1611132-1611151 Msa0229800:intron 40.0%
TCCCAAATCCATACATGTCA+AGG + chr2_2:1611136-1611155 None:intergenic 40.0%
CTTACAGGTACAGGAAAACA+TGG + chr2_2:1611242-1611261 None:intergenic 40.0%
TACACCATGCATTCAAACAC+AGG + chr2_2:1611303-1611322 None:intergenic 40.0%
CGGTTACATAGCATGTCTTT+AGG + chr2_2:1611505-1611524 None:intergenic 40.0%
AGACATGCTATGTAACCGAT+TGG - chr2_2:1611507-1611526 Msa0229800:intron 40.0%
TCCTTCTCTACACAACCAAT+CGG + chr2_2:1611525-1611544 None:intergenic 40.0%
TAGCTATGTGTGTGTAACCA+AGG - chr2_2:1611555-1611574 Msa0229800:intron 40.0%
AGCTATGTGTGTGTAACCAA+GGG - chr2_2:1611556-1611575 Msa0229800:intron 40.0%
CATGATCTATATACTCCCCT+TGG + chr2_2:1611575-1611594 None:intergenic 40.0%
AGCTACTCGTGTAAGAAGTT+TGG + chr2_2:1611602-1611621 None:intergenic 40.0%
TGTATTCACCAAGTCTTGGA+GGG + chr2_2:1611636-1611655 None:intergenic 40.0%
ATGTATTCACCAAGTCTTGG+AGG + chr2_2:1611637-1611656 None:intergenic 40.0%
! AATACATCTTCTAGCTAGCC+TGG - chr2_2:1611650-1611669 Msa0229800:intron 40.0%
GAGACAATTGAGCTCACAAA+TGG - chr2_2:1611850-1611869 Msa0229800:CDS 40.0%
! AATACAGTGGCTCAAGTTGT+TGG + chr2_2:1612035-1612054 None:intergenic 40.0%
GAGATACATGTCTTGCATGT+TGG - chr2_2:1612106-1612125 Msa0229800:five_prime_UTR 40.0%
TCTTGCATGTTGGAAGATCA+AGG - chr2_2:1612116-1612135 Msa0229800:five_prime_UTR 40.0%
TTTCACTGACAGTATCTGTC+TGG - chr2_2:1612195-1612214 Msa0229800:five_prime_UTR 40.0%
!! GACCCAGTTTTTGGAAAGTT+TGG - chr2_2:1612217-1612236 Msa0229800:five_prime_UTR 40.0%
TGCTCATCAGGAATCTATAG+TGG + chr2_2:1612313-1612332 None:intergenic 40.0%
! TTTTACTGGTCACTTCCCTT+TGG - chr2_2:1612530-1612549 Msa0229800:intron 40.0%
! GAAGAACCTCTCTTTTCTGA+TGG - chr2_2:1612736-1612755 Msa0229800:intron 40.0%
!! CAGCTCTGAAGAATCTAAGA+AGG - chr2_2:1612838-1612857 Msa0229800:intron 40.0%
CAAGCTATACATTGTACCTG+AGG + chr2_2:1612897-1612916 None:intergenic 40.0%
! AATGATGGAGTTAAGGTGGA+AGG - chr2_2:1613050-1613069 Msa0229800:intron 40.0%
AAAGATCAGTGGCATCAAAC+TGG + chr2_2:1613351-1613370 None:intergenic 40.0%
! TGTTATCCCATAGTTTGTCC+AGG + chr2_2:1613487-1613506 None:intergenic 40.0%
! CTTGTTGTATGTTGTGCTCA+GGG + chr2_2:1613660-1613679 None:intergenic 40.0%
GATGTGTTAGGAATAGAGAC+CGG + chr2_2:1613869-1613888 None:intergenic 40.0%
TCTATTCCTAACACATCCCA+TGG - chr2_2:1613872-1613891 Msa0229800:intron 40.0%
GCTGCAAACCCAATAATTCA+AGG + chr2_2:1613988-1614007 None:intergenic 40.0%
GCCCAACCCAAATTCAAATA+TGG + chr2_2:1614037-1614056 None:intergenic 40.0%
CCGAATTTGTGCGTTGAAAT+AGG + chr2_2:1614059-1614078 None:intergenic 40.0%
CTATTCGGCTACTCATTATC+GGG + chr2_2:1614207-1614226 None:intergenic 40.0%
CCTATTCGGCTACTCATTAT+CGG + chr2_2:1614208-1614227 None:intergenic 40.0%
CTACATTCAATTGGAGTTGG+AGG + chr2_2:1614424-1614443 None:intergenic 40.0%
TAGTAGAATCTCAAGCAGGT+CGG - chr2_2:1614728-1614747 Msa0229800:intron 40.0%
CCACTCAACACTTTCATAGA+AGG + chr2_2:1614796-1614815 None:intergenic 40.0%
!! CCTTCTATGAAAGTGTTGAG+TGG - chr2_2:1614793-1614812 Msa0229800:intron 40.0%
! AGTGGGTACAATTCTAAGAG+AGG - chr2_2:1614811-1614830 Msa0229800:intron 40.0%
! CAATGATGCTGAGCAAGTTT+TGG - chr2_2:1614855-1614874 Msa0229800:intron 40.0%
!! TGAGCAAGTTTTGGCAGAAA+TGG - chr2_2:1614864-1614883 Msa0229800:intron 40.0%
TGTCGTGTTAACTCAGAATC+AGG + chr2_2:1615116-1615135 None:intergenic 40.0%
TAACACGACATCTGTCATTG+TGG - chr2_2:1615126-1615145 Msa0229800:intron 40.0%
CACAGGATTGTGGCAATAAA+AGG + chr2_2:1615183-1615202 None:intergenic 40.0%
! AAAAGTACAAGGTCTTCACG+CGG - chr2_2:1615393-1615412 Msa0229800:intron 40.0%
!! AGTTGGTGAAAAGAAGGAAC+AGG + chr2_2:1615627-1615646 None:intergenic 40.0%
AAATCTGTAGTAGCAGGAGT+TGG + chr2_2:1615644-1615663 None:intergenic 40.0%
GATGCAAAATCTGTAGTAGC+AGG + chr2_2:1615650-1615669 None:intergenic 40.0%
TTCCATTTGCAATGTCTTGC+AGG - chr2_2:1616095-1616114 Msa0229800:intron 40.0%
TTCCTGCAAGACATTGCAAA+TGG + chr2_2:1616100-1616119 None:intergenic 40.0%
AGGACAAAAGAAGCTGAACA+AGG - chr2_2:1616177-1616196 Msa0229800:intron 40.0%
AATGGTCAGATTGGAACAAG+TGG - chr2_2:1616213-1616232 Msa0229800:five_prime_UTR 40.0%
ATGGTCAGATTGGAACAAGT+GGG - chr2_2:1616214-1616233 Msa0229800:five_prime_UTR 40.0%
TGTCCTTGCGATATCTTGTA+TGG + chr2_2:1616349-1616368 None:intergenic 40.0%
GAATGATGTGTACACAACTC+AGG + chr2_2:1617009-1617028 None:intergenic 40.0%
!! TCAGTTCTGGTTCAACCGAA+GGG + chr2_2:1610139-1610158 None:intergenic 45.0%
!! TTCAGTTCTGGTTCAACCGA+AGG + chr2_2:1610140-1610159 None:intergenic 45.0%
CCAACAGCTTTCAACTCGAT+TGG + chr2_2:1610260-1610279 None:intergenic 45.0%
!! CCAATCGAGTTGAAAGCTGT+TGG - chr2_2:1610257-1610276 Msa0229800:three_prime_UTR 45.0%
TGCATTGAGTGCTTCTCTGT+CGG - chr2_2:1610741-1610760 Msa0229800:intron 45.0%
CAATCATCCGTATCGGGTTA+TGG - chr2_2:1610788-1610807 Msa0229800:CDS 45.0%
GCCCTTGACATGTATGGATT+TGG - chr2_2:1611131-1611150 Msa0229800:intron 45.0%
GACTTGATTTCCCTTTGCCA+TGG + chr2_2:1611396-1611415 None:intergenic 45.0%
! ACCGATTGGTTGTGTAGAGA+AGG - chr2_2:1611521-1611540 Msa0229800:intron 45.0%
GCTATGTGTGTGTAACCAAG+GGG - chr2_2:1611557-1611576 Msa0229800:intron 45.0%
AGGCAATGTGTAAGGTAGCT+TGG - chr2_2:1611787-1611806 Msa0229800:CDS 45.0%
GCATGTTGGAAGATCAAGGT+TGG - chr2_2:1612120-1612139 Msa0229800:five_prime_UTR 45.0%
TGTTGGAAGATCAAGGTTGG+TGG - chr2_2:1612123-1612142 Msa0229800:five_prime_UTR 45.0%
! ATCTGTCTGGACCCAGTTTT+TGG - chr2_2:1612208-1612227 Msa0229800:five_prime_UTR 45.0%
! TCTAGATAGGCTTGCTCATC+AGG + chr2_2:1612325-1612344 None:intergenic 45.0%
TTCAGAGTCAGCTCTGCATT+TGG + chr2_2:1612715-1612734 None:intergenic 45.0%
GAGCTGAGATGTTGCAACAA+AGG + chr2_2:1612824-1612843 None:intergenic 45.0%
ACAATGTCTAGGCTAACCTC+AGG - chr2_2:1612878-1612897 Msa0229800:intron 45.0%
! CCTTGTTGTATGTTGTGCTC+AGG + chr2_2:1613661-1613680 None:intergenic 45.0%
CCTGAGCACAACATACAACA+AGG - chr2_2:1613658-1613677 Msa0229800:intron 45.0%
! ACGCACAAATTCGGCTTGTA+AGG - chr2_2:1614065-1614084 Msa0229800:intron 45.0%
ACGTTCAATCATGAGCGTGA+GGG + chr2_2:1614164-1614183 None:intergenic 45.0%
CTACTCATTATCGGGTCACT+CGG + chr2_2:1614199-1614218 None:intergenic 45.0%
CCGATAATGAGTAGCCGAAT+AGG - chr2_2:1614205-1614224 Msa0229800:intron 45.0%
ATGAGTAGCCGAATAGGTCT+AGG - chr2_2:1614211-1614230 Msa0229800:intron 45.0%
TCTGGGAGTCTCCCAATAAA+TGG + chr2_2:1614345-1614364 None:intergenic 45.0%
! ATATTTGGAGTTGGAGGTCC+TGG - chr2_2:1614379-1614398 Msa0229800:intron 45.0%
! TATTTGGAGTTGGAGGTCCT+GGG - chr2_2:1614380-1614399 Msa0229800:intron 45.0%
TCAAGAACACAGAGGAGTGA+CGG + chr2_2:1614479-1614498 None:intergenic 45.0%
AGGAAGACTCAAGAACACAG+AGG + chr2_2:1614487-1614506 None:intergenic 45.0%
CTCAGAATCAGGTAATCCGA+GGG + chr2_2:1615105-1615124 None:intergenic 45.0%
ACTCAGAATCAGGTAATCCG+AGG + chr2_2:1615106-1615125 None:intergenic 45.0%
! TCACTCAAAAGAAGAGCACG+AGG - chr2_2:1615418-1615437 Msa0229800:intron 45.0%
!! AGCAGGAGTTGGTGAAAAGA+AGG + chr2_2:1615633-1615652 None:intergenic 45.0%
AGTGAACTATGTGACCAGAG+GGG + chr2_2:1615776-1615795 None:intergenic 45.0%
GAGTGAACTATGTGACCAGA+GGG + chr2_2:1615777-1615796 None:intergenic 45.0%
TGAGTGAACTATGTGACCAG+AGG + chr2_2:1615778-1615797 None:intergenic 45.0%
AGTTTAGGAGGGGGATATGT+TGG - chr2_2:1615939-1615958 Msa0229800:five_prime_UTR 45.0%
TTGCAGGAAGCTAGAATTGC+TGG - chr2_2:1616111-1616130 Msa0229800:intron 45.0%
GCTACTACCAAGCTCTACTT+TGG + chr2_2:1616265-1616284 None:intergenic 45.0%
ATGATGCTGTAGTGCCCTTA+TGG + chr2_2:1616299-1616318 None:intergenic 45.0%
CTGCCATACAAGATATCGCA+AGG - chr2_2:1616343-1616362 Msa0229800:intron 45.0%
TCGCAAGGACACTAGAAGAA+TGG - chr2_2:1616358-1616377 Msa0229800:intron 45.0%
CGCAAGGACACTAGAAGAAT+GGG - chr2_2:1616359-1616378 Msa0229800:intron 45.0%
TGGCCTGCCTTCAGTTTATT+TGG - chr2_2:1616586-1616605 Msa0229800:intron 45.0%
GGCCTGCCTTCAGTTTATTT+GGG - chr2_2:1616587-1616606 Msa0229800:intron 45.0%
AGCCCAAATAAACTGAAGGC+AGG + chr2_2:1616592-1616611 None:intergenic 45.0%
CCTTCAGTTTATTTGGGCTG+CGG - chr2_2:1616593-1616612 Msa0229800:intron 45.0%
CTTCAGTTTATTTGGGCTGC+GGG - chr2_2:1616594-1616613 Msa0229800:intron 45.0%
TTCAGTTTATTTGGGCTGCG+GGG - chr2_2:1616595-1616614 Msa0229800:intron 45.0%
GTAATGTTGAGGTAGTGTGG+CGG + chr2_2:1616695-1616714 None:intergenic 45.0%
CACACTACCTCAACATTACG+CGG - chr2_2:1616696-1616715 Msa0229800:intron 45.0%
GCATAATCCGCGTAATGTTG+AGG + chr2_2:1616706-1616725 None:intergenic 45.0%
CTTGGAGAGAACTTGAACAG+TGG + chr2_2:1616776-1616795 None:intergenic 45.0%
CGCCGAAAAGAAGTGACAAT+AGG + chr2_2:1617034-1617053 None:intergenic 45.0%
!! TAAAAAATAAAAAAAATTTC+AGG + chr2_2:1614507-1614526 None:intergenic 5.0%
!! TTCTGGTTCAACCGAAGGGA+GGG + chr2_2:1610135-1610154 None:intergenic 50.0%
ATGTCCAGATTGGAGTGCAG+AGG - chr2_2:1610956-1610975 Msa0229800:CDS 50.0%
TCTTCCTCTGCACTCCAATC+TGG + chr2_2:1610963-1610982 None:intergenic 50.0%
GCGACCTGTGTTTGAATGCA+TGG - chr2_2:1611296-1611315 Msa0229800:intron 50.0%
CAAAGAGGAACTCCTTGCCA+TGG - chr2_2:1611376-1611395 Msa0229800:intron 50.0%
GAACTCCTTGCCATGGCAAA+GGG - chr2_2:1611383-1611402 Msa0229800:intron 50.0%
GATTTCCCTTTGCCATGGCA+AGG + chr2_2:1611391-1611410 None:intergenic 50.0%
ATGCCAATCCCTCCAAGACT+TGG - chr2_2:1611625-1611644 Msa0229800:intron 50.0%
TCACCAAGTCTTGGAGGGAT+TGG + chr2_2:1611631-1611650 None:intergenic 50.0%
CTCACAAATGGCCAATGCCA+AGG - chr2_2:1611862-1611881 Msa0229800:CDS 50.0%
GTGCATGATACTGTACTCCC+CGG - chr2_2:1612594-1612613 Msa0229800:intron 50.0%
AGAGTCAGCTCTGCATTTGG+AGG + chr2_2:1612712-1612731 None:intergenic 50.0%
TGTTGTGCTCAGGGTAAGAG+AGG + chr2_2:1613651-1613670 None:intergenic 50.0%
GTGTGTCCATGGGATGTGTT+AGG + chr2_2:1613881-1613900 None:intergenic 50.0%
GGATACAACGTTGAAGGGTC+AGG + chr2_2:1614016-1614035 None:intergenic 50.0%
CGTTCAATCATGAGCGTGAG+GGG + chr2_2:1614163-1614182 None:intergenic 50.0%
GACGTTCAATCATGAGCGTG+AGG + chr2_2:1614165-1614184 None:intergenic 50.0%
ATTGGGAGACTCCCAGAAGT+CGG - chr2_2:1614348-1614367 Msa0229800:intron 50.0%
GTTGACTGCAGCAGAATGCA+TGG + chr2_2:1615516-1615535 None:intergenic 50.0%
TCTATGGGGCACAGTGAGAT+CGG + chr2_2:1615719-1615738 None:intergenic 50.0%
GAGTTACTACAACTCCCCTC+TGG - chr2_2:1615759-1615778 Msa0229800:intron 50.0%
ATATAGAGGACCCTCGAGCT+TGG - chr2_2:1615813-1615832 Msa0229800:five_prime_UTR 50.0%
AGAACCCAAACCAAGCTCGA+GGG + chr2_2:1615826-1615845 None:intergenic 50.0%
CGAAAACTGGATCACACAGC+AGG + chr2_2:1615850-1615869 None:intergenic 50.0%
TTATCAATCGCACCACCGAG+TGG - chr2_2:1615872-1615891 Msa0229800:intron 50.0%
CAAGCTGCAGCTCCAACTAT+TGG + chr2_2:1616000-1616019 None:intergenic 50.0%
TCCTGATATCAAGGATGCGC+CGG - chr2_2:1616320-1616339 Msa0229800:intron 50.0%
GCGATATCTTGTATGGCAGC+CGG + chr2_2:1616342-1616361 None:intergenic 50.0%
CCATTGTCAGGTGTAGGGAA+GGG + chr2_2:1616550-1616569 None:intergenic 50.0%
ACCATTGTCAGGTGTAGGGA+AGG + chr2_2:1616551-1616570 None:intergenic 50.0%
TTCCCTACACCTGACAATGG+TGG - chr2_2:1616550-1616569 Msa0229800:intron 50.0%
TCCCTACACCTGACAATGGT+GGG - chr2_2:1616551-1616570 Msa0229800:intron 50.0%
TCCCACCATTGTCAGGTGTA+GGG + chr2_2:1616555-1616574 None:intergenic 50.0%
ATCCCACCATTGTCAGGTGT+AGG + chr2_2:1616556-1616575 None:intergenic 50.0%
CCGCAGCCCAAATAAACTGA+AGG + chr2_2:1616596-1616615 None:intergenic 50.0%
CGCGTAATGTTGAGGTAGTG+TGG + chr2_2:1616698-1616717 None:intergenic 50.0%
!! GTTCTGGTTCAACCGAAGGG+AGG + chr2_2:1610136-1610155 None:intergenic 55.0%
TGTTGTCGTCAGCAGCAACG+GGG + chr2_2:1610345-1610364 None:intergenic 55.0%
CTGTTGTCGTCAGCAGCAAC+GGG + chr2_2:1610346-1610365 None:intergenic 55.0%
CCTGTTGTCGTCAGCAGCAA+CGG + chr2_2:1610347-1610366 None:intergenic 55.0%
GGAACTCCTTGCCATGGCAA+AGG - chr2_2:1611382-1611401 Msa0229800:intron 55.0%
ACACATAGCCTCGGGCTTGA+AGG - chr2_2:1613521-1613540 Msa0229800:intron 55.0%
GTGTTAAGCCTTCAAGCCCG+AGG + chr2_2:1613532-1613551 None:intergenic 55.0%
CAACAGGCACGTGTGTCCAT+GGG + chr2_2:1613891-1613910 None:intergenic 55.0%
! ACAGAGGAGTGACGGAGACT+GGG + chr2_2:1614471-1614490 None:intergenic 55.0%
TCTCAAGCAGGTCGGAGCAT+CGG - chr2_2:1614736-1614755 Msa0229800:intron 55.0%
AGGACCCTCGAGCTTGGTTT+GGG - chr2_2:1615819-1615838 Msa0229800:five_prime_UTR 55.0%
CAGAACCCAAACCAAGCTCG+AGG + chr2_2:1615827-1615846 None:intergenic 55.0%
!! ACCACCGAGTGGTGATGGTA+GGG - chr2_2:1615883-1615902 Msa0229800:intron 55.0%
AACCCCCTACCATCACCACT+CGG + chr2_2:1615890-1615909 None:intergenic 55.0%
TGTCAGGTGTAGGGAAGGGA+GGG + chr2_2:1616546-1616565 None:intergenic 55.0%
TTGTCAGGTGTAGGGAAGGG+AGG + chr2_2:1616547-1616566 None:intergenic 55.0%
CCCTTCCCTACACCTGACAA+TGG - chr2_2:1616547-1616566 Msa0229800:intron 55.0%
!! CGGGGAGCGTTCTATCTGAT+TGG - chr2_2:1616613-1616632 Msa0229800:intron 55.0%
GTTGTCGTCAGCAGCAACGG+GGG + chr2_2:1610344-1610363 None:intergenic 60.0%
CCGTTGCTGCTGACGACAAC+AGG - chr2_2:1610344-1610363 Msa0229800:CDS 60.0%
CCAACAGGCACGTGTGTCCA+TGG + chr2_2:1613892-1613911 None:intergenic 60.0%
CCATGGACACACGTGCCTGT+TGG - chr2_2:1613889-1613908 Msa0229800:intron 60.0%
GGAGGTCCTGGGTTCAAACC+CGG - chr2_2:1614391-1614410 Msa0229800:intron 60.0%
GAGGTCCTGGGTTCAAACCC+GGG - chr2_2:1614392-1614411 Msa0229800:intron 60.0%
ACGGAGACTGGGACCCGATT+TGG + chr2_2:1614460-1614479 None:intergenic 60.0%
! CACAGAGGAGTGACGGAGAC+TGG + chr2_2:1614472-1614491 None:intergenic 60.0%
GAGGACCCTCGAGCTTGGTT+TGG - chr2_2:1615818-1615837 Msa0229800:five_prime_UTR 60.0%
ATCGCACCACCGAGTGGTGA+TGG - chr2_2:1615878-1615897 Msa0229800:intron 60.0%
!! CACCACCGAGTGGTGATGGT+AGG - chr2_2:1615882-1615901 Msa0229800:intron 60.0%
!! CCACCGAGTGGTGATGGTAG+GGG - chr2_2:1615884-1615903 Msa0229800:intron 60.0%
!! CACCGAGTGGTGATGGTAGG+GGG - chr2_2:1615885-1615904 Msa0229800:intron 60.0%
TAGCCCGCGCGGTATCCATA+AGG - chr2_2:1616281-1616300 Msa0229800:intron 60.0%
AGCCCGCGCGGTATCCATAA+GGG - chr2_2:1616282-1616301 Msa0229800:intron 60.0%
TGCCCTTATGGATACCGCGC+GGG + chr2_2:1616287-1616306 None:intergenic 60.0%
GTGCCCTTATGGATACCGCG+CGG + chr2_2:1616288-1616307 None:intergenic 60.0%
GCCGGCGCATCCTTGATATC+AGG + chr2_2:1616324-1616343 None:intergenic 60.0%
TCCTGGGTTCAAACCCGGGC+AGG - chr2_2:1614396-1614415 Msa0229800:intron 65.0%
CCTGGGTTCAAACCCGGGCA+GGG - chr2_2:1614397-1614416 Msa0229800:intron 65.0%
TGGAGTTGGAGGTCCCTGCC+CGG + chr2_2:1614413-1614432 None:intergenic 65.0%
CCCCTACCATCACCACTCGG+TGG + chr2_2:1615887-1615906 None:intergenic 65.0%
! GAGCTTGGTAGTAGCCCGCG+CGG - chr2_2:1616270-1616289 Msa0229800:intron 65.0%
! AACGGGGGAGGAGCGTGACG+CGG + chr2_2:1610329-1610348 None:intergenic 70.0%
GTCGTCAGCAGCAACGGGGG+AGG + chr2_2:1610341-1610360 None:intergenic 70.0%
CCCTGCCCGGGTTTGAACCC+AGG + chr2_2:1614400-1614419 None:intergenic 70.0%
GGAGTTGGAGGTCCCTGCCC+GGG + chr2_2:1614412-1614431 None:intergenic 70.0%
! GGGAGGAGCGTGACGCGGCA+CGG + chr2_2:1610324-1610343 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 1610119 1617074 1610119 ID=Msa0229800;Name=Msa0229800
chr2_2 mRNA 1610119 1617074 1610119 ID=Msa0229800-mRNA-1;Parent=Msa0229800;Name=Msa0229800-mRNA-1;_AED=0.13;_eAED=0.13;_QI=1486|1|1|1|1|0.91|12|221|242
chr2_2 exon 1610119 1610534 1610119 ID=Msa0229800-mRNA-1:exon:591;Parent=Msa0229800-mRNA-1
chr2_2 exon 1610771 1611076 1610771 ID=Msa0229800-mRNA-1:exon:590;Parent=Msa0229800-mRNA-1
chr2_2 exon 1611694 1612459 1611694 ID=Msa0229800-mRNA-1:exon:589;Parent=Msa0229800-mRNA-1
chr2_2 exon 1614122 1614199 1614122 ID=Msa0229800-mRNA-1:exon:588;Parent=Msa0229800-mRNA-1
chr2_2 exon 1614294 1614352 1614294 ID=Msa0229800-mRNA-1:exon:587;Parent=Msa0229800-mRNA-1
chr2_2 exon 1614429 1614489 1614429 ID=Msa0229800-mRNA-1:exon:586;Parent=Msa0229800-mRNA-1
chr2_2 exon 1615771 1615843 1615771 ID=Msa0229800-mRNA-1:exon:585;Parent=Msa0229800-mRNA-1
chr2_2 exon 1615937 1616062 1615937 ID=Msa0229800-mRNA-1:exon:584;Parent=Msa0229800-mRNA-1
chr2_2 exon 1616195 1616260 1616195 ID=Msa0229800-mRNA-1:exon:583;Parent=Msa0229800-mRNA-1
chr2_2 exon 1616384 1616562 1616384 ID=Msa0229800-mRNA-1:exon:582;Parent=Msa0229800-mRNA-1
chr2_2 exon 1616637 1616695 1616637 ID=Msa0229800-mRNA-1:exon:581;Parent=Msa0229800-mRNA-1
chr2_2 exon 1616828 1617074 1616828 ID=Msa0229800-mRNA-1:exon:580;Parent=Msa0229800-mRNA-1
chr2_2 five_prime_UTR 1616828 1617074 1616828 ID=Msa0229800-mRNA-1:five_prime_utr;Parent=Msa0229800-mRNA-1
chr2_2 five_prime_UTR 1616637 1616695 1616637 ID=Msa0229800-mRNA-1:five_prime_utr;Parent=Msa0229800-mRNA-1
chr2_2 five_prime_UTR 1616384 1616562 1616384 ID=Msa0229800-mRNA-1:five_prime_utr;Parent=Msa0229800-mRNA-1
chr2_2 five_prime_UTR 1616195 1616260 1616195 ID=Msa0229800-mRNA-1:five_prime_utr;Parent=Msa0229800-mRNA-1
chr2_2 five_prime_UTR 1615937 1616062 1615937 ID=Msa0229800-mRNA-1:five_prime_utr;Parent=Msa0229800-mRNA-1
chr2_2 five_prime_UTR 1615771 1615843 1615771 ID=Msa0229800-mRNA-1:five_prime_utr;Parent=Msa0229800-mRNA-1
chr2_2 five_prime_UTR 1614429 1614489 1614429 ID=Msa0229800-mRNA-1:five_prime_utr;Parent=Msa0229800-mRNA-1
chr2_2 five_prime_UTR 1614294 1614352 1614294 ID=Msa0229800-mRNA-1:five_prime_utr;Parent=Msa0229800-mRNA-1
chr2_2 five_prime_UTR 1614122 1614199 1614122 ID=Msa0229800-mRNA-1:five_prime_utr;Parent=Msa0229800-mRNA-1
chr2_2 five_prime_UTR 1611922 1612459 1611922 ID=Msa0229800-mRNA-1:five_prime_utr;Parent=Msa0229800-mRNA-1
chr2_2 CDS 1611694 1611921 1611694 ID=Msa0229800-mRNA-1:cds;Parent=Msa0229800-mRNA-1
chr2_2 CDS 1610771 1611076 1610771 ID=Msa0229800-mRNA-1:cds;Parent=Msa0229800-mRNA-1
chr2_2 CDS 1610340 1610534 1610340 ID=Msa0229800-mRNA-1:cds;Parent=Msa0229800-mRNA-1
chr2_2 three_prime_UTR 1610119 1610339 1610119 ID=Msa0229800-mRNA-1:three_prime_utr;Parent=Msa0229800-mRNA-1
Gene Sequence

>Msa0229800

ATGAAAAATCTTGACAGGTTAGATGAACGAAAGCGCAGAAAAGATTTTATACTTGAAAGAAATTTACTTTGTCCCAATCCTTTTGAGAAATATCTCTCACCTGAAGAGCTTCAAATATGTGAAAAGTACAAGGTCTTCACGCGGTTTCACTCAAAAGAAGAGCACGAGGAGTTGCTAAAAACTATTATTAAAGAACACCGACTTGCCAAAAGAATACAAGACTTAAAGGAAGCTAGAATTGCTGGCTGTGTAACTGCTGCTGAAGCTTATCAGTTTATTGAACAAAAGAGGACAAAAGAAGCTGAACAAGGTGACTGTAAAGAAAATGGTCAGATTGGAACAAGTGGGAAGACTTCACAGAGACCAAATTTTTCCAAAGTAGAGCTTGGTAGTAGCCCGCGCGGTATCCATAAGGGCACTACAGCATCATTTCCTGATATCAAGGATGCGCCGGCTGCCATACAAGATATCGCAAGGACACTAGAAGAATGGGATATCAGTGATTTTGATGGGGCTGAGTTGCTTTCTGAATCTGAAATAAAGCTTTGTAATGAGATCAGAATGCTGCCGCCACACTACCTCAACATTACGCGGATTATGCAATTAGAAATTTCGGAGGGCAGAGTAACCAATAAATCTGATGCATATCCACTGTTCAAGTTCTCTCCAAGCAAGATTGATAGAATTTATGACATGCTTGTGGAAAAAGGAGTTGTTCAAGAAAAATGA
Protein sequence

>Msa0229800

MKNLDRLDERKRRKDFILERNLLCPNPFEKYLSPEELQICEKYKVFTRFHSKEEHEELLKTIIKEHRLAKRIQDLKEARIAGCVTAAEAYQFIEQKRTKEAEQGDCKENGQIGTSGKTSQRPNFSKVELGSSPRGIHKGTTASFPDIKDAPAAIQDIARTLEEWDISDFDGAELLSESEIKLCNEIRMLPPHYLNITRIMQLEISEGRVTNKSDAYPLFKFSPSKIDRIYDMLVEKGVVQEK*