AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0438730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0438730 MtrunA17_Chr3g0120841 95.359 237 11 0 6 242 329 565 3.43e-165 468
Msa0438730 MtrunA17_Chr3g0120201 78.723 235 27 1 6 240 53 264 2.02e-132 374
Msa0438730 MtrunA17_Chr2g0290321 45.339 236 104 3 6 238 335 548 1.71e-60 199
Msa0438730 MtrunA17_Chr7g0239471 40.948 232 105 2 6 237 284 483 1.20e-48 166
Msa0438730 MtrunA17_Chr2g0290341 40.928 237 106 6 6 238 297 503 1.08e-43 154
Msa0438730 MtrunA17_Chr3g0120231 37.885 227 117 3 14 238 2 206 5.36e-43 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0438730 AT4G16420.3 46.414 237 96 3 6 240 278 485 1.08e-65 211
Msa0438730 AT4G16420.2 46.414 237 96 3 6 240 275 482 1.12e-65 211
Msa0438730 AT4G16420.1 46.414 237 96 3 6 240 279 486 1.14e-65 211
Msa0438730 AT3G07740.2 49.153 236 105 5 6 238 250 473 4.37e-61 199
Msa0438730 AT3G07740.3 49.153 236 105 5 6 238 300 523 2.29e-60 198
Msa0438730 AT3G07740.1 49.153 236 105 5 6 238 321 544 2.82e-60 199
Msa0438730 AT3G07740.4 49.153 236 105 5 6 238 328 551 3.08e-60 199

Find 136 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTTGTACAATACAATTT+TGG 0.127632 3_3:+3486201 None:intergenic
TGGATATGCATCAGATTTAT+TGG 0.206249 3_3:+3479642 None:intergenic
TACATTATTATCAAATAAAA+AGG 0.207582 3_3:-3481426 Msa0438730:five_prime_UTR
TCATACTTGCATATCAAATA+TGG 0.217986 3_3:+3481142 None:intergenic
CAAAAGAATACAAGACTTAA+AGG 0.237764 3_3:-3480917 Msa0438730:intron
CTATATTCCCCAGATAATTT+AGG 0.244656 3_3:+3481626 None:intergenic
CTTTAAGTCTTGTATTCTTT+TGG 0.246239 3_3:+3480918 None:intergenic
GCCCTTGACATGTATGGATT+TGG 0.247889 3_3:-3485267 Msa0438730:five_prime_UTR
GAAAAGAAACCTAAATTATC+TGG 0.248531 3_3:-3481635 Msa0438730:five_prime_UTR
CCTTAACTCCATCATTATTC+TGG 0.272285 3_3:+3483352 None:intergenic
TCACATATTTGAAGCTCTTC+AGG 0.283060 3_3:+3481024 None:intergenic
TACTGCAACAAAGATATTTC+AGG 0.283715 3_3:-3485723 Msa0438730:five_prime_UTR
TATGACATGCTTGTGGAAAA+AGG 0.285605 3_3:-3479583 Msa0438730:CDS
CTAAATTATCTGGGGAATAT+AGG 0.294662 3_3:-3481625 Msa0438730:five_prime_UTR
CCTAGACATTGTTTGATTAG+TGG 0.301162 3_3:+3483528 None:intergenic
TCATGTACAAATTTCAGTTC+TGG 0.305916 3_3:+3486249 None:intergenic
CACAGGATTGTGGCAATAAA+AGG 0.306327 3_3:+3481215 None:intergenic
TTCAGAGTCAGCTCTGCATT+TGG 0.311067 3_3:+3483683 None:intergenic
GTCTTCTAATTATTTCTGTA+TGG 0.313895 3_3:+3479467 None:intergenic
ACATGTATGGATTTGGGAAT+TGG 0.314921 3_3:-3485260 Msa0438730:five_prime_UTR
TGTAACGGTTATAATTTATA+AGG 0.318843 3_3:-3479527 Msa0438730:three_prime_UTR
CAAGGTGACTGTAAAGAAAA+TGG 0.338873 3_3:-3480200 Msa0438730:CDS
TGCTCCGTATTTACTCAAAA+AGG 0.340521 3_3:-3481460 Msa0438730:five_prime_UTR
CCCTTGACATGTATGGATTT+GGG 0.361167 3_3:-3485266 Msa0438730:five_prime_UTR
ATGATGCTGTAGTGCCCTTA+TGG 0.365256 3_3:+3480099 None:intergenic
CAATGATGCTGAGCAAGTTT+TGG 0.365626 3_3:-3481540 Msa0438730:five_prime_UTR
TCTTCCTCTGCACTCCAATC+TGG 0.370485 3_3:+3485438 None:intergenic
CTGTTGTCGTCAGCAGCAAC+GGG 0.372446 3_3:+3486055 None:intergenic
CAATCATCCGTATCGGGTTA+TGG 0.379198 3_3:-3485610 Msa0438730:intron
TTGAAAGCTGTTGGTGAGTT+CGG 0.389481 3_3:-3486132 Msa0438730:five_prime_UTR
CCGTTGCTGCTGACGACAAC+AGG 0.390938 3_3:-3486054 Msa0438730:intron
GATTATGCAATTAGAAATTT+CGG 0.398926 3_3:-3479677 Msa0438730:CDS
GAGAGTTGAAAGCAACGAAA+TGG 0.405204 3_3:-3486110 Msa0438730:five_prime_UTR
GGTGAGAGATATTTCTCAAA+AGG 0.412382 3_3:+3481045 None:intergenic
TTGCAGGAAGCTAGAATTGC+TGG 0.412554 3_3:-3480284 Msa0438730:intron
GCCGGCGCATCCTTGATATC+AGG 0.414004 3_3:+3480074 None:intergenic
CCAGAATAATGATGGAGTTA+AGG 0.420264 3_3:-3483352 Msa0438730:five_prime_UTR
ATCAGTTTATTGAACAAAAG+AGG 0.421769 3_3:-3480238 Msa0438730:CDS
TGTCGTGTTAACTCAGAATC+AGG 0.432258 3_3:+3481282 None:intergenic
GCTACTACCAAGCTCTACTT+TGG 0.434719 3_3:+3480133 None:intergenic
GAGATATTTCTCAAAAGGAT+TGG 0.435153 3_3:+3481050 None:intergenic
TGTAAAGAAAATGGTCAGAT+TGG 0.437324 3_3:-3480191 Msa0438730:CDS
CGCAAGGACACTAGAAGAAT+GGG 0.447327 3_3:-3480036 Msa0438730:CDS
TCTTCTAATTATTTCTGTAT+GGG 0.449429 3_3:+3479468 None:intergenic
AGATATTTCTCAAAAGGATT+GGG 0.455350 3_3:+3481051 None:intergenic
TAGTTTAGATGCAAACAATC+TGG 0.457276 3_3:+3481329 None:intergenic
TCAATTTACTTCCCTCCCTT+CGG 0.457630 3_3:-3486277 Msa0438730:five_prime_UTR
TAAATTCTATCAATCTTGCT+TGG 0.458223 3_3:+3479604 None:intergenic
TTCCGCTTATATGTCCAGAT+TGG 0.463921 3_3:-3485452 Msa0438730:five_prime_UTR
CGCCGAAAAGAAGTGACAAT+AGG 0.467978 3_3:+3479364 None:intergenic
CCTGTTGTCGTCAGCAGCAA+CGG 0.470945 3_3:+3486054 None:intergenic
CCACTCAACACTTTCATAGA+AGG 0.473437 3_3:+3481602 None:intergenic
AGCATCATTTCCTGATATCA+AGG 0.475853 3_3:-3480084 Msa0438730:CDS
CCAACAGCTTTCAACTCGAT+TGG 0.476084 3_3:+3486141 None:intergenic
AAAAGAAACCTAAATTATCT+GGG 0.477686 3_3:-3481634 Msa0438730:five_prime_UTR
TCGCAAGGACACTAGAAGAA+TGG 0.484815 3_3:-3480037 Msa0438730:CDS
GACTTGATTTCCCTTTGCCA+TGG 0.486611 3_3:+3485005 None:intergenic
AGAGTCAGCTCTGCATTTGG+AGG 0.489977 3_3:+3483686 None:intergenic
TCTTTCAAGTTCAATCAAGA+AGG 0.495439 3_3:-3483388 Msa0438730:five_prime_UTR
TAAAAGCAATCATCCGTATC+GGG 0.498853 3_3:-3485616 Msa0438730:five_prime_UTR
GAACTCCTTGCCATGGCAAA+GGG 0.499938 3_3:-3485015 Msa0438730:five_prime_UTR
ACTGCAACAAAGATATTTCA+GGG 0.505834 3_3:-3485722 Msa0438730:five_prime_UTR
TCAAATAGACTTACAGGTAC+AGG 0.507290 3_3:+3485150 None:intergenic
AGAGTTGAAAGCAACGAAAT+GGG 0.508382 3_3:-3486109 Msa0438730:five_prime_UTR
TAGCCCGCGCGGTATCCATA+AGG 0.509942 3_3:-3480114 Msa0438730:CDS
TTCAGTTCTGGTTCAACCGA+AGG 0.511439 3_3:+3486261 None:intergenic
TCCCAAATCCATACATGTCA+AGG 0.513442 3_3:+3485265 None:intergenic
TTAGAAACTTCATCTGCAGC+AGG 0.517986 3_3:-3485863 Msa0438730:intron
TGCATTGAGTGCTTCTCTGT+CGG 0.520843 3_3:-3485657 Msa0438730:five_prime_UTR
GGAAGAGATGTTACTTCTTG+AGG 0.526186 3_3:-3485421 Msa0438730:intron
TCCTGATATCAAGGATGCGC+CGG 0.526937 3_3:-3480075 Msa0438730:CDS
CCACTAATCAAACAATGTCT+AGG 0.527975 3_3:-3483528 Msa0438730:five_prime_UTR
ATCATTATTCTGGCTCACAT+TGG 0.528554 3_3:+3483362 None:intergenic
AGCCCGCGCGGTATCCATAA+GGG 0.533280 3_3:-3480113 Msa0438730:CDS
GATTTCCCTTTGCCATGGCA+AGG 0.533849 3_3:+3485010 None:intergenic
TGTCCTTGCGATATCTTGTA+TGG 0.534456 3_3:+3480049 None:intergenic
ATATGCTTTATATTCTGTAA+CGG 0.536151 3_3:-3479542 Msa0438730:three_prime_UTR
GGAACTCCTTGCCATGGCAA+AGG 0.537689 3_3:-3485016 Msa0438730:five_prime_UTR
ATAAAAGCAATCATCCGTAT+CGG 0.541422 3_3:-3485617 Msa0438730:five_prime_UTR
CTTGGAGAGAACTTGAACAG+TGG 0.542544 3_3:+3479622 None:intergenic
GGGAGGAGCGTGACGCGGCA+CGG 0.542944 3_3:+3486077 None:intergenic
CAGCTCTGAAGAATCTAAGA+AGG 0.544590 3_3:-3483557 Msa0438730:five_prime_UTR
AATGTGAGCCAGAATAATGA+TGG 0.544819 3_3:-3483360 Msa0438730:five_prime_UTR
TTCTGGTTCAACCGAAGGGA+GGG 0.551095 3_3:+3486266 None:intergenic
CTTCTATGAAAGTGTTGAGT+GGG 0.555328 3_3:-3481601 Msa0438730:five_prime_UTR
GCGATATCTTGTATGGCAGC+CGG 0.560280 3_3:+3480056 None:intergenic
AATGGTCAGATTGGAACAAG+TGG 0.563482 3_3:-3480182 Msa0438730:CDS
CCAATCGAGTTGAAAGCTGT+TGG 0.564497 3_3:-3486141 Msa0438730:five_prime_UTR
TCACATATACAGTATTATAG+TGG 0.573431 3_3:+3485187 None:intergenic
TCTCAAGCAGGTCGGAGCAT+CGG 0.574038 3_3:-3481659 Msa0438730:five_prime_UTR
CGCGTAATGTTGAGGTAGTG+TGG 0.574177 3_3:+3479700 None:intergenic
TAGAATTTATGACATGCTTG+TGG 0.575676 3_3:-3479590 Msa0438730:CDS
TTGTTAGTAGAATCTCAAGC+AGG 0.576918 3_3:-3481671 Msa0438730:intron
TCAGTTCTGGTTCAACCGAA+GGG 0.576958 3_3:+3486262 None:intergenic
CTTACAGGTACAGGAAAACA+TGG 0.577655 3_3:+3485159 None:intergenic
AATGATGGAGTTAAGGTGGA+AGG 0.584215 3_3:-3483345 Msa0438730:intron
GAATAATGATGGAGTTAAGG+TGG 0.585712 3_3:-3483349 Msa0438730:five_prime_UTR
TCAAATATGTGAAAAGTACA+AGG 0.591825 3_3:-3481013 Msa0438730:CDS
AATGATGTTGCAGACAACAT+TGG 0.592297 3_3:-3485237 Msa0438730:five_prime_UTR
GTTCATACCATAACCCGATA+CGG 0.593072 3_3:+3485603 None:intergenic
GCAGGAATTGGAATAACTGA+TGG 0.599798 3_3:-3485771 Msa0438730:intron
TTTATTCCATCAGAAAAGAG+AGG 0.602975 3_3:+3483653 None:intergenic
GCATAATCCGCGTAATGTTG+AGG 0.604131 3_3:+3479692 None:intergenic
AGATATAGTACACAGGATTG+TGG 0.608012 3_3:+3481205 None:intergenic
CACACTACCTCAACATTACG+CGG 0.609087 3_3:-3479699 Msa0438730:CDS
GTTCTGGTTCAACCGAAGGG+AGG 0.609392 3_3:+3486265 None:intergenic
CAAAGAGGAACTCCTTGCCA+TGG 0.618565 3_3:-3485022 Msa0438730:five_prime_UTR
CCCAAATCCATACATGTCAA+GGG 0.618928 3_3:+3485266 None:intergenic
CTGCCATACAAGATATCGCA+AGG 0.619678 3_3:-3480052 Msa0438730:CDS
ACTCAGAATCAGGTAATCCG+AGG 0.622251 3_3:+3481292 None:intergenic
CTCAGAATCAGGTAATCCGA+GGG 0.626528 3_3:+3481293 None:intergenic
TGCCCTTATGGATACCGCGC+GGG 0.630704 3_3:+3480111 None:intergenic
AGTGGGTACAATTCTAAGAG+AGG 0.633103 3_3:-3481584 Msa0438730:five_prime_UTR
TATGCAATTAGAAATTTCGG+AGG 0.635449 3_3:-3479674 Msa0438730:CDS
GAATGATGTGTACACAACTC+AGG 0.635896 3_3:+3479389 None:intergenic
ATGGTCAGATTGGAACAAGT+GGG 0.637877 3_3:-3480181 Msa0438730:CDS
AGGACAAAAGAAGCTGAACA+AGG 0.641573 3_3:-3480218 Msa0438730:CDS
TACTTGCATATCAAATATGG+AGG 0.641966 3_3:+3481145 None:intergenic
TTGAAAGCAACGAAATGGGT+CGG 0.642486 3_3:-3486105 Msa0438730:five_prime_UTR
ATGTCCAGATTGGAGTGCAG+AGG 0.642688 3_3:-3485442 Msa0438730:five_prime_UTR
CCTTCTATGAAAGTGTTGAG+TGG 0.642901 3_3:-3481602 Msa0438730:five_prime_UTR
GTTGTCGTCAGCAGCAACGG+GGG 0.644046 3_3:+3486057 None:intergenic
ACAATGTCTAGGCTAACCTC+AGG 0.651755 3_3:-3483517 Msa0438730:intron
TCCTAAAAGATATAGTACAC+AGG 0.655997 3_3:+3481198 None:intergenic
CTCCAATCTGGACATATAAG+CGG 0.659538 3_3:+3485450 None:intergenic
GAGATCAAAATCTTGACACA+CGG 0.665618 3_3:+3485680 None:intergenic
TAACACGACATCTGTCATTG+TGG 0.667073 3_3:-3481269 Msa0438730:five_prime_UTR
AAAGAAACCTAAATTATCTG+GGG 0.667221 3_3:-3481633 Msa0438730:five_prime_UTR
TAGTAGAATCTCAAGCAGGT+CGG 0.674109 3_3:-3481667 Msa0438730:intron
ATGCAATTAGAAATTTCGGA+GGG 0.695473 3_3:-3479673 Msa0438730:CDS
TGTTGTCGTCAGCAGCAACG+GGG 0.702665 3_3:+3486056 None:intergenic
GTGCCCTTATGGATACCGCG+CGG 0.719187 3_3:+3480110 None:intergenic
TCACTCAAAAGAAGAGCACG+AGG 0.725147 3_3:-3480977 Msa0438730:CDS
GTAATGTTGAGGTAGTGTGG+CGG 0.745009 3_3:+3479703 None:intergenic
AAAAGTACAAGGTCTTCACG+CGG 0.746232 3_3:-3481002 Msa0438730:CDS
GAGCTTGGTAGTAGCCCGCG+CGG 0.796024 3_3:-3480125 Msa0438730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTATTTTTAATT+TGG - chr3_3:3483748-3483767 Msa0438730:intron 0.0%
!!! TCAATTTTTTATATAAGTAA+CGG - chr3_3:3479456-3479475 Msa0438730:three_prime_UTR 10.0%
!! TAATTATATAACTATAAAAC+AGG + chr3_3:3480061-3480080 None:intergenic 10.0%
!!! TCATTAATCAAATTAATTTT+TGG - chr3_3:3482597-3482616 Msa0438730:intron 10.0%
!!! TTTTTTTTATAAGTGATAAA+AGG - chr3_3:3482660-3482679 Msa0438730:intron 10.0%
!! TACATTATTATCAAATAAAA+AGG - chr3_3:3484196-3484215 Msa0438730:intron 10.0%
!!! TAAAATATATTTCTTTTCAC+AGG - chr3_3:3480135-3480154 Msa0438730:CDS 15.0%
!!! TTTTTTTTTTGAAAAAGTAG+AGG - chr3_3:3481379-3481398 Msa0438730:five_prime_UTR 15.0%
!! AAAAATAATGTATTCTAGAT+AGG + chr3_3:3481565-3481584 None:intergenic 15.0%
!!! AGAGAATTTTTTTTAGAATT+AGG + chr3_3:3481684-3481703 None:intergenic 15.0%
!! TTTGACAGTAATATAAAAAT+TGG - chr3_3:3482381-3482400 Msa0438730:intron 15.0%
!! TTGACAGTAATATAAAAATT+GGG - chr3_3:3482382-3482401 Msa0438730:intron 15.0%
!! TAATAATAACTACATTCAAT+TGG + chr3_3:3483660-3483679 None:intergenic 15.0%
!! GTTATTATTATTAACCAAAT+CGG - chr3_3:3483670-3483689 Msa0438730:five_prime_UTR 15.0%
!! TTATTATTATTAACCAAATC+GGG - chr3_3:3483671-3483690 Msa0438730:five_prime_UTR 15.0%
!!! TAATTTTGTTTTCATTTGTT+GGG + chr3_3:3484234-3484253 None:intergenic 15.0%
!!! TTAATTTTGTTTTCATTTGT+TGG + chr3_3:3484235-3484254 None:intergenic 15.0%
!!! TATATCTTTTAGGATATATT+TGG - chr3_3:3484433-3484452 Msa0438730:intron 15.0%
!!! TACTTGTACAATACAATTTT+GGG + chr3_3:3479423-3479442 None:intergenic 20.0%
!!! ATACTTGTACAATACAATTT+TGG + chr3_3:3479424-3479443 None:intergenic 20.0%
!! ACTTAGGATTAAGAATTATA+TGG - chr3_3:3479639-3479658 Msa0438730:CDS 20.0%
!! TGGATATTTATATGCTAATT+GGG + chr3_3:3481239-3481258 None:intergenic 20.0%
!! TTGGATATTTATATGCTAAT+TGG + chr3_3:3481240-3481259 None:intergenic 20.0%
!! AAAAGAAATTCATTTGTACA+TGG + chr3_3:3481593-3481612 None:intergenic 20.0%
!!! TTCTAAAAAAAATTCTCTTG+TGG - chr3_3:3481686-3481705 Msa0438730:intron 20.0%
!! ATAATCAGAGTAAATTAGTA+AGG + chr3_3:3482000-3482019 None:intergenic 20.0%
!! TAATGACATTCTATGTTAAT+GGG - chr3_3:3482169-3482188 Msa0438730:intron 20.0%
!!! GTTAATGGGTATAATTTATA+CGG - chr3_3:3482183-3482202 Msa0438730:intron 20.0%
!!! TTAATGGGTATAATTTATAC+GGG - chr3_3:3482184-3482203 Msa0438730:intron 20.0%
!! AATATAAAAATTGGGTAGTT+TGG - chr3_3:3482390-3482409 Msa0438730:intron 20.0%
!! ATATAAAAATTGGGTAGTTT+GGG - chr3_3:3482391-3482410 Msa0438730:intron 20.0%
!!! TTTTATCATAGTAGTACAAA+TGG - chr3_3:3482516-3482535 Msa0438730:intron 20.0%
!! TTTATCATAGTAGTACAAAT+GGG - chr3_3:3482517-3482536 Msa0438730:intron 20.0%
!! TTATTGTATCACTATAGTTA+AGG + chr3_3:3482840-3482859 None:intergenic 20.0%
!! ATAAAACTGTATAACAAGTT+GGG + chr3_3:3482972-3482991 None:intergenic 20.0%
!! TATAAAACTGTATAACAAGT+TGG + chr3_3:3482973-3482992 None:intergenic 20.0%
!!! TTGTTTTTTCCTTGAATTAT+TGG - chr3_3:3483203-3483222 Msa0438730:intron 20.0%
!!! TGTTTTTTCCTTGAATTATT+GGG - chr3_3:3483204-3483223 Msa0438730:intron 20.0%
!! TTGTATCCATATTTGAATTT+GGG - chr3_3:3483255-3483274 Msa0438730:intron 20.0%
!!! TTCAGATATTTTCCATTTAT+TGG - chr3_3:3483557-3483576 Msa0438730:five_prime_UTR 20.0%
!!! TCAGATATTTTCCATTTATT+GGG - chr3_3:3483558-3483577 Msa0438730:intron 20.0%
!! AAAAGAAACCTAAATTATCT+GGG - chr3_3:3483988-3484007 Msa0438730:intron 20.0%
!! CAAAATTAACCATCTAAAAA+TGG - chr3_3:3484246-3484265 Msa0438730:intron 20.0%
!!! TTATTTCCTCTAGTTTATAA+AGG - chr3_3:3484787-3484806 Msa0438730:intron 20.0%
!!! ATTTCTTTATTAGCTTTGAT+TGG - chr3_3:3485707-3485726 Msa0438730:five_prime_UTR 20.0%
!!! TTGGCCTTTTAATTTTATTT+TGG - chr3_3:3485726-3485745 Msa0438730:five_prime_UTR 20.0%
!! CGTTCCAAAATAAAATTAAA+AGG + chr3_3:3485733-3485752 None:intergenic 20.0%
!!! TTTAATTTTATTTTGGAACG+AGG - chr3_3:3485733-3485752 Msa0438730:five_prime_UTR 20.0%
!! GATTATGCAATTAGAAATTT+CGG - chr3_3:3485945-3485964 Msa0438730:intron 20.0%
!! ATATGCTTTATATTCTGTAA+CGG - chr3_3:3486080-3486099 Msa0438730:five_prime_UTR 20.0%
!! TGTAACGGTTATAATTTATA+AGG - chr3_3:3486095-3486114 Msa0438730:five_prime_UTR 20.0%
!!! TCTTCTAATTATTTCTGTAT+GGG + chr3_3:3486157-3486176 None:intergenic 20.0%
! ATAATTCGATATTTCGACTT+AGG - chr3_3:3479623-3479642 Msa0438730:CDS 25.0%
!! TTTTAGATCCAAGAGAAAAA+AGG - chr3_3:3479716-3479735 Msa0438730:CDS 25.0%
!! TATTATTTTCTAAATGTCGC+AGG - chr3_3:3479833-3479852 Msa0438730:intron 25.0%
! TCACATATACAGTATTATAG+TGG + chr3_3:3480438-3480457 None:intergenic 25.0%
!!! ATAGGATTTGTCTCATTTTT+CGG - chr3_3:3480570-3480589 Msa0438730:intron 25.0%
!! TAGATTTTTCATGCTTGAAT+TGG - chr3_3:3480681-3480700 Msa0438730:intron 25.0%
!! TTTTCATTTCATCAAAGAGA+AGG + chr3_3:3480942-3480961 None:intergenic 25.0%
! AAAGAAAAAAAATCAAGCCT+TGG + chr3_3:3481106-3481125 None:intergenic 25.0%
!!! AGGCTTGATTTTTTTTCTTT+AGG - chr3_3:3481106-3481125 Msa0438730:CDS 25.0%
! TTGGAAAAGTAAGAAACAAA+AGG + chr3_3:3481149-3481168 None:intergenic 25.0%
! TTAAAGATAGCTTCATATCT+TGG + chr3_3:3481168-3481187 None:intergenic 25.0%
!! TATCTCTTTTGTAATCATTG+TGG + chr3_3:3481316-3481335 None:intergenic 25.0%
!!! TTTTTTGAAAAAGTAGAGGT+TGG - chr3_3:3481383-3481402 Msa0438730:five_prime_UTR 25.0%
! TTGGAAAGTTTGGTTATTAA+AGG - chr3_3:3481454-3481473 Msa0438730:five_prime_UTR 25.0%
! TGGAAAGTTTGGTTATTAAA+GGG - chr3_3:3481455-3481474 Msa0438730:five_prime_UTR 25.0%
! TAGATTATAGATGATCCAAA+GGG + chr3_3:3481775-3481794 None:intergenic 25.0%
! ATAGATTATAGATGATCCAA+AGG + chr3_3:3481776-3481795 None:intergenic 25.0%
! GTAATGACATTCTATGTTAA+TGG - chr3_3:3482168-3482187 Msa0438730:intron 25.0%
! TTTCATTAAATTTGTCTGTG+AGG - chr3_3:3482485-3482504 Msa0438730:intron 25.0%
! TTCATTAAATTTGTCTGTGA+GGG - chr3_3:3482486-3482505 Msa0438730:intron 25.0%
! TTTGATTAATGAAAGATCAG+TGG + chr3_3:3482589-3482608 None:intergenic 25.0%
! ATCTTTAACATACCTGATAA+AGG - chr3_3:3482623-3482642 Msa0438730:intron 25.0%
! TCTTTAACATACCTGATAAA+GGG - chr3_3:3482624-3482643 Msa0438730:intron 25.0%
! AAAATAGTAAACCCTTTATC+AGG + chr3_3:3482638-3482657 None:intergenic 25.0%
! CTATAGTGATACAATAATTG+TGG - chr3_3:3482843-3482862 Msa0438730:intron 25.0%
!!! GATTAGCTTTTTAACAAGTT+GGG + chr3_3:3483021-3483040 None:intergenic 25.0%
!!! TGATTAGCTTTTTAACAAGT+TGG + chr3_3:3483022-3483041 None:intergenic 25.0%
! ATAAACATATAACAGGAGTA+GGG + chr3_3:3483046-3483065 None:intergenic 25.0%
! AATAAACATATAACAGGAGT+AGG + chr3_3:3483047-3483066 None:intergenic 25.0%
! CCTCAAAATAAACATATAAC+AGG + chr3_3:3483053-3483072 None:intergenic 25.0%
!!! CCTGTTATATGTTTATTTTG+AGG - chr3_3:3483050-3483069 Msa0438730:intron 25.0%
! TCTCAGCTATTTATTATATC+CGG - chr3_3:3483074-3483093 Msa0438730:intron 25.0%
! GTTGTATCCATATTTGAATT+TGG - chr3_3:3483254-3483273 Msa0438730:intron 25.0%
! ATCTTATAACCGGAATTTAT+GGG + chr3_3:3483508-3483527 None:intergenic 25.0%
! GAAAAGAAACCTAAATTATC+TGG - chr3_3:3483987-3484006 Msa0438730:intron 25.0%
! AAAGAAACCTAAATTATCTG+GGG - chr3_3:3483989-3484008 Msa0438730:intron 25.0%
!!! CATACCTTTTTGAGTAAATA+CGG + chr3_3:3484169-3484188 None:intergenic 25.0%
! TCATACTTGCATATCAAATA+TGG + chr3_3:3484483-3484502 None:intergenic 25.0%
! AGATATTTCTCAAAAGGATT+GGG + chr3_3:3484574-3484593 None:intergenic 25.0%
!! TCAAATATGTGAAAAGTACA+AGG - chr3_3:3484609-3484628 Msa0438730:intron 25.0%
!!! CTTTAAGTCTTGTATTCTTT+TGG + chr3_3:3484707-3484726 None:intergenic 25.0%
! CAAAAGAATACAAGACTTAA+AGG - chr3_3:3484705-3484724 Msa0438730:intron 25.0%
!! AATTTGATTCGTCAATATAG+AGG - chr3_3:3485026-3485045 Msa0438730:five_prime_UTR 25.0%
!!! CTACAAGTTTTGATTAGTTT+AGG - chr3_3:3485151-3485170 Msa0438730:intron 25.0%
!!! AAGTTTTGATTAGTTTAGGA+GGG - chr3_3:3485155-3485174 Msa0438730:intron 25.0%
! ATCAGTTTATTGAACAAAAG+AGG - chr3_3:3485384-3485403 Msa0438730:intron 25.0%
!! TGAAGTACTAAAAAAACCAA+GGG + chr3_3:3485668-3485687 None:intergenic 25.0%
!! ATGAAGTACTAAAAAAACCA+AGG + chr3_3:3485669-3485688 None:intergenic 25.0%
! TAAATTCTATCAATCTTGCT+TGG + chr3_3:3486021-3486040 None:intergenic 25.0%
!!! GTCTTCTAATTATTTCTGTA+TGG + chr3_3:3486158-3486177 None:intergenic 25.0%
!!! TTATCTCAGTTCTTATTTTC+TGG + chr3_3:3486199-3486218 None:intergenic 25.0%
TCATGTACAAATTTCAGTTC+TGG + chr3_3:3479376-3479395 None:intergenic 30.0%
!!! TAAAGCAACCTTTTTTCTCT+TGG + chr3_3:3479727-3479746 None:intergenic 30.0%
TACTGCAACAAAGATATTTC+AGG - chr3_3:3479899-3479918 Msa0438730:intron 30.0%
ACTGCAACAAAGATATTTCA+GGG - chr3_3:3479900-3479919 Msa0438730:intron 30.0%
ATAAAAGCAATCATCCGTAT+CGG - chr3_3:3480005-3480024 Msa0438730:CDS 30.0%
AACAACATTTAACATGTAGC+AGG + chr3_3:3480272-3480291 None:intergenic 30.0%
!! TAACAAGCTTGTTTCGTTTT+AGG - chr3_3:3480333-3480352 Msa0438730:intron 30.0%
TTGTATGTTGATGTTCACAT+AGG - chr3_3:3480552-3480571 Msa0438730:intron 30.0%
!! TAGGATTTGTCTCATTTTTC+GGG - chr3_3:3480571-3480590 Msa0438730:intron 30.0%
AAGGGAAATCAAGTCAAAAA+AGG - chr3_3:3480625-3480644 Msa0438730:intron 30.0%
TAAATTCTAGGCAATGTGTA+AGG - chr3_3:3481003-3481022 Msa0438730:CDS 30.0%
AAAAAGTTGCAAAGTTACAG+AGG + chr3_3:3481054-3481073 None:intergenic 30.0%
AACCAAACTTTCCAAAAACT+GGG + chr3_3:3481449-3481468 None:intergenic 30.0%
TAACCAAACTTTCCAAAAAC+TGG + chr3_3:3481450-3481469 None:intergenic 30.0%
!!! CTGTCTTGTTTTTAAGTGTT+GGG - chr3_3:3481798-3481817 Msa0438730:intron 30.0%
!!! TGTCTTGTTTTTAAGTGTTG+GGG - chr3_3:3481799-3481818 Msa0438730:intron 30.0%
! TTTTGCAATGTCAAGTTTCA+TGG - chr3_3:3481857-3481876 Msa0438730:intron 30.0%
AGGAAATTCTGCATGAAAAA+CGG + chr3_3:3481919-3481938 None:intergenic 30.0%
TTTATTCCATCAGAAAAGAG+AGG + chr3_3:3481972-3481991 None:intergenic 30.0%
CATAGAATGTCATTACGAAA+TGG + chr3_3:3482164-3482183 None:intergenic 30.0%
!! TCTTTCAAGTTCAATCAAGA+AGG - chr3_3:3482234-3482253 Msa0438730:intron 30.0%
CTACTTCAGCAACAAAATAA+GGG + chr3_3:3482335-3482354 None:intergenic 30.0%
! AGGTTTACTATGATTGCTTT+TGG - chr3_3:3482680-3482699 Msa0438730:intron 30.0%
!!! TTGCTTTTGGAATTTAATCC+TGG - chr3_3:3482693-3482712 Msa0438730:intron 30.0%
ATTTAATCCTGGACAAACTA+TGG - chr3_3:3482704-3482723 Msa0438730:intron 30.0%
TTTAATCCTGGACAAACTAT+GGG - chr3_3:3482705-3482724 Msa0438730:intron 30.0%
TTATTACAAACACATAGCCT+CGG - chr3_3:3482739-3482758 Msa0438730:intron 30.0%
CATACAACAAGGAATGTATA+TGG - chr3_3:3482896-3482915 Msa0438730:intron 30.0%
TGTTTAAGAAAAGATCCAAC+AGG + chr3_3:3483134-3483153 None:intergenic 30.0%
AATATGGATACAACGTTGAA+GGG + chr3_3:3483248-3483267 None:intergenic 30.0%
AAATATGGATACAACGTTGA+AGG + chr3_3:3483249-3483268 None:intergenic 30.0%
ATCCATATTTGAATTTGGGT+TGG - chr3_3:3483259-3483278 Msa0438730:intron 30.0%
! TCCATATTTGAATTTGGGTT+GGG - chr3_3:3483260-3483279 Msa0438730:intron 30.0%
GCTCAAGTCAAATATAAAGA+TGG + chr3_3:3483477-3483496 None:intergenic 30.0%
CCTAAAAATCCCATAAATTC+CGG - chr3_3:3483496-3483515 Msa0438730:intron 30.0%
CATCTTATAACCGGAATTTA+TGG + chr3_3:3483509-3483528 None:intergenic 30.0%
AAGTCGGTATGAAAGATATT+TGG - chr3_3:3483591-3483610 Msa0438730:intron 30.0%
! GTATGAAAGATATTTGGAGT+TGG - chr3_3:3483597-3483616 Msa0438730:intron 30.0%
TAACTACATTCAATTGGAGT+TGG + chr3_3:3483654-3483673 None:intergenic 30.0%
TTGTCATATGCTTACTAAAC+CGG - chr3_3:3483874-3483893 Msa0438730:intron 30.0%
ATGTGTGTTCTCTAATTTAC+CGG + chr3_3:3483896-3483915 None:intergenic 30.0%
CTATATTCCCCAGATAATTT+AGG + chr3_3:3483999-3484018 None:intergenic 30.0%
CTAAATTATCTGGGGAATAT+AGG - chr3_3:3483997-3484016 Msa0438730:intron 30.0%
! TTTGGCAGAAATGGAATTTT+TGG - chr3_3:3484100-3484119 Msa0438730:intron 30.0%
CGTATTTACTCAAAAAGGTA+TGG - chr3_3:3484167-3484186 Msa0438730:intron 30.0%
TAACCATCTAAAAATGGTCT+TGG - chr3_3:3484252-3484271 Msa0438730:intron 30.0%
TAGTTTAGATGCAAACAATC+TGG + chr3_3:3484296-3484315 None:intergenic 30.0%
! TCCTGTGTACTATATCTTTT+AGG - chr3_3:3484423-3484442 Msa0438730:intron 30.0%
TCCTAAAAGATATAGTACAC+AGG + chr3_3:3484427-3484446 None:intergenic 30.0%
TACTTGCATATCAAATATGG+AGG + chr3_3:3484480-3484499 None:intergenic 30.0%
CAAGTATGAAAAATCTTGAC+AGG - chr3_3:3484494-3484513 Msa0438730:intron 30.0%
GAGATATTTCTCAAAAGGAT+TGG + chr3_3:3484575-3484594 None:intergenic 30.0%
AGTCATCCTTTATAAACTAG+AGG + chr3_3:3484796-3484815 None:intergenic 30.0%
! TCTAGTTTATAAAGGATGAC+TGG - chr3_3:3484795-3484814 Msa0438730:intron 30.0%
CTAGTTTATAAAGGATGACT+GGG - chr3_3:3484796-3484815 Msa0438730:intron 30.0%
TAGTTTATAAAGGATGACTG+GGG - chr3_3:3484797-3484816 Msa0438730:intron 30.0%
!! AACATACTACTTTTCAGTTG+AGG + chr3_3:3484903-3484922 None:intergenic 30.0%
! TTTTCTATGGGAAGTTCTAT+GGG + chr3_3:3484961-3484980 None:intergenic 30.0%
! TTTTTCTATGGGAAGTTCTA+TGG + chr3_3:3484962-3484981 None:intergenic 30.0%
ATAGAACTTCCCATAGAAAA+AGG - chr3_3:3484961-3484980 Msa0438730:intron 30.0%
! GTAACTCAACCTTTTTCTAT+GGG + chr3_3:3484973-3484992 None:intergenic 30.0%
! AGTAACTCAACCTTTTTCTA+TGG + chr3_3:3484974-3484993 None:intergenic 30.0%
ACTAATCAAAACTTGTAGAC+TGG + chr3_3:3485149-3485168 None:intergenic 30.0%
!!! CAAGTTTTGATTAGTTTAGG+AGG - chr3_3:3485154-3485173 Msa0438730:intron 30.0%
!!! AGTTTTGATTAGTTTAGGAG+GGG - chr3_3:3485156-3485175 Msa0438730:intron 30.0%
TGTAAAGAAAATGGTCAGAT+TGG - chr3_3:3485431-3485450 Msa0438730:five_prime_UTR 30.0%
! AGCTCTACTTTGGAAAAATT+TGG + chr3_3:3485482-3485501 None:intergenic 30.0%
! AATTTTTCCAAAGTAGAGCT+TGG - chr3_3:3485482-3485501 Msa0438730:intron 30.0%
TATGCAATTAGAAATTTCGG+AGG - chr3_3:3485948-3485967 Msa0438730:intron 30.0%
ATGCAATTAGAAATTTCGGA+GGG - chr3_3:3485949-3485968 Msa0438730:intron 30.0%
TGGATATGCATCAGATTTAT+TGG + chr3_3:3485983-3486002 None:intergenic 30.0%
TAGAATTTATGACATGCTTG+TGG - chr3_3:3486032-3486051 Msa0438730:intron 30.0%
!!! TCAGTTCTTATTTTCTGGTT+AGG + chr3_3:3486194-3486213 None:intergenic 30.0%
!! ATCCTATTGTCACTTCTTTT+CGG - chr3_3:3486256-3486275 Msa0438730:five_prime_UTR 30.0%
AGAGTTGAAAGCAACGAAAT+GGG - chr3_3:3479513-3479532 Msa0438730:three_prime_UTR 35.0%
TTTCTAAATGTCGCAGGAAT+TGG - chr3_3:3479839-3479858 Msa0438730:intron 35.0%
GAGATCAAAATCTTGACACA+CGG + chr3_3:3479945-3479964 None:intergenic 35.0%
!! TACGGATGATTGCTTTTATG+AGG + chr3_3:3480004-3480023 None:intergenic 35.0%
TAAAAGCAATCATCCGTATC+GGG - chr3_3:3480006-3480025 Msa0438730:CDS 35.0%
GATTCATTATTCATCCATGC+TGG + chr3_3:3480096-3480115 None:intergenic 35.0%
ACATGTATGGATTTGGGAAT+TGG - chr3_3:3480362-3480381 Msa0438730:intron 35.0%
AATGATGTTGCAGACAACAT+TGG - chr3_3:3480385-3480404 Msa0438730:intron 35.0%
TCAAATAGACTTACAGGTAC+AGG + chr3_3:3480475-3480494 None:intergenic 35.0%
GTGTTGTCAAATAGACTTAC+AGG + chr3_3:3480481-3480500 None:intergenic 35.0%
!!! TTTTTCGGGAAAGAACAAAG+AGG - chr3_3:3480585-3480604 Msa0438730:intron 35.0%
! TAGCATGTCTTTAGGTTCAT+CGG + chr3_3:3480721-3480740 None:intergenic 35.0%
AAGATGTATTCACCAAGTCT+TGG + chr3_3:3480864-3480883 None:intergenic 35.0%
AAATGTCAACTCAAATGACC+AGG + chr3_3:3480895-3480914 None:intergenic 35.0%
!!! GGTCATTTGAGTTGACATTT+TGG - chr3_3:3480895-3480914 Msa0438730:intron 35.0%
!! CATTTTGGTAGTTATGTCTC+TGG - chr3_3:3480910-3480929 Msa0438730:intron 35.0%
CGCACAGAACATTAAATTCT+AGG - chr3_3:3480991-3481010 Msa0438730:CDS 35.0%
AAAAAATCAAGCCTTGGCAT+TGG + chr3_3:3481100-3481119 None:intergenic 35.0%
TGAAAGACATTGGAATACAG+TGG + chr3_3:3481272-3481291 None:intergenic 35.0%
GTATTCCAATGTCTTTCACA+AGG - chr3_3:3481274-3481293 Msa0438730:five_prime_UTR 35.0%
ATTCACCTTGTGAAAGACAT+TGG + chr3_3:3481282-3481301 None:intergenic 35.0%
GACTGCGTTTGTAAAATCTA+AGG - chr3_3:3481712-3481731 Msa0438730:intron 35.0%
!!! CTAACTTGTGCTTGTTTTAC+TGG - chr3_3:3481743-3481762 Msa0438730:intron 35.0%
CCAACACTTAAAAACAAGAC+AGG + chr3_3:3481800-3481819 None:intergenic 35.0%
!!! CCTGTCTTGTTTTTAAGTGT+TGG - chr3_3:3481797-3481816 Msa0438730:intron 35.0%
AAAATGCAAACAACAAACCG+GGG + chr3_3:3481841-3481860 None:intergenic 35.0%
CAAAATGCAAACAACAAACC+GGG + chr3_3:3481842-3481861 None:intergenic 35.0%
GCAAAATGCAAACAACAAAC+CGG + chr3_3:3481843-3481862 None:intergenic 35.0%
CCTAGACATTGTTTGATTAG+TGG + chr3_3:3482097-3482116 None:intergenic 35.0%
CCACTAATCAAACAATGTCT+AGG - chr3_3:3482094-3482113 Msa0438730:intron 35.0%
!! ATCATTATTCTGGCTCACAT+TGG + chr3_3:3482263-3482282 None:intergenic 35.0%
AATGTGAGCCAGAATAATGA+TGG - chr3_3:3482262-3482281 Msa0438730:intron 35.0%
CCTTAACTCCATCATTATTC+TGG + chr3_3:3482273-3482292 None:intergenic 35.0%
! CCAGAATAATGATGGAGTTA+AGG - chr3_3:3482270-3482289 Msa0438730:intron 35.0%
! GAATAATGATGGAGTTAAGG+TGG - chr3_3:3482273-3482292 Msa0438730:intron 35.0%
TTCAGCAACAAAATAAGGGT+CGG + chr3_3:3482331-3482350 None:intergenic 35.0%
CCTACTTCAGCAACAAAATA+AGG + chr3_3:3482336-3482355 None:intergenic 35.0%
!!! CCTTATTTTGTTGCTGAAGT+AGG - chr3_3:3482333-3482352 Msa0438730:intron 35.0%
GAGGCTATGTGTTTGTAATA+AGG + chr3_3:3482740-3482759 None:intergenic 35.0%
TATTACAAACACATAGCCTC+GGG - chr3_3:3482740-3482759 Msa0438730:intron 35.0%
! AGGAAATCTCTAAAGACTGT+AGG + chr3_3:3482820-3482839 None:intergenic 35.0%
TGCAATACAAAGTAGTGCAA+AGG - chr3_3:3482935-3482954 Msa0438730:intron 35.0%
TGGGTATGATTAACATCTTG+AGG + chr3_3:3483002-3483021 None:intergenic 35.0%
CCTATTTCAACGCACAAATT+CGG - chr3_3:3483283-3483302 Msa0438730:intron 35.0%
TCTCACATTGAATGTGGATA+TGG + chr3_3:3483354-3483373 None:intergenic 35.0%
TGAGAATCTCACATTGAATG+TGG + chr3_3:3483360-3483379 None:intergenic 35.0%
ACGATTAACCTAGACCTATT+CGG + chr3_3:3483449-3483468 None:intergenic 35.0%
! CCGGAATTTATGGGATTTTT+AGG + chr3_3:3483499-3483518 None:intergenic 35.0%
GACATCTCTCATCTTATAAC+CGG + chr3_3:3483518-3483537 None:intergenic 35.0%
!! TATCTTTCATACCGACTTCT+GGG + chr3_3:3483589-3483608 None:intergenic 35.0%
!! ATATCTTTCATACCGACTTC+TGG + chr3_3:3483590-3483609 None:intergenic 35.0%
! TGAAAGATATTTGGAGTTGG+AGG - chr3_3:3483600-3483619 Msa0438730:intron 35.0%
TGCTAACAGTAATACACACT+TGG - chr3_3:3483775-3483794 Msa0438730:intron 35.0%
GCTCTTAACACAAATAGTTC+AGG - chr3_3:3483797-3483816 Msa0438730:intron 35.0%
TTGTTAGTAGAATCTCAAGC+AGG - chr3_3:3483951-3483970 Msa0438730:intron 35.0%
!! CTTCTATGAAAGTGTTGAGT+GGG - chr3_3:3484021-3484040 Msa0438730:intron 35.0%
TGCTCCGTATTTACTCAAAA+AGG - chr3_3:3484162-3484181 Msa0438730:intron 35.0%
!! CTTCCAAGACCATTTTTAGA+TGG + chr3_3:3484258-3484277 None:intergenic 35.0%
!!! CTAGTTTTAAGCTTTTCCCT+CGG - chr3_3:3484313-3484332 Msa0438730:intron 35.0%
AGATATAGTACACAGGATTG+TGG + chr3_3:3484420-3484439 None:intergenic 35.0%
GGTGAGAGATATTTCTCAAA+AGG + chr3_3:3484580-3484599 None:intergenic 35.0%
! TCACATATTTGAAGCTCTTC+AGG + chr3_3:3484601-3484620 None:intergenic 35.0%
! CTTGTATTCTTTTGGCAAGT+CGG + chr3_3:3484699-3484718 None:intergenic 35.0%
!! AGGAATTCTGTTTCAAGTTC+AGG + chr3_3:3484834-3484853 None:intergenic 35.0%
!! TACTACTTTTCAGTTGAGGT+AGG + chr3_3:3484899-3484918 None:intergenic 35.0%
TTTCTATGGGAAGTTCTATG+GGG + chr3_3:3484960-3484979 None:intergenic 35.0%
GCGATTGATAAAACGAAAAC+TGG + chr3_3:3485090-3485109 None:intergenic 35.0%
AATCAAAACTTGTAGACTGG+TGG + chr3_3:3485146-3485165 None:intergenic 35.0%
!!! GTTTTGATTAGTTTAGGAGG+GGG - chr3_3:3485157-3485176 Msa0438730:intron 35.0%
TTCTACACATGACCAATAGT+TGG - chr3_3:3485212-3485231 Msa0438730:five_prime_UTR 35.0%
! TCTATCAAAGTGTGCTGATA+CGG - chr3_3:3485293-3485312 Msa0438730:intron 35.0%
CAAGACATTGCAAATGGAAA+TGG + chr3_3:3485321-3485340 None:intergenic 35.0%
CAAGGTGACTGTAAAGAAAA+TGG - chr3_3:3485422-3485441 Msa0438730:five_prime_UTR 35.0%
AGCATCATTTCCTGATATCA+AGG - chr3_3:3485538-3485557 Msa0438730:intron 35.0%
! TGGGATATCAGTGATTTTGA+TGG - chr3_3:3485605-3485624 Msa0438730:intron 35.0%
!! GGGATATCAGTGATTTTGAT+GGG - chr3_3:3485606-3485625 Msa0438730:intron 35.0%
!! GGATATCAGTGATTTTGATG+GGG - chr3_3:3485607-3485626 Msa0438730:intron 35.0%
! TGTAAGAGATTTTTCTCCCT+TGG - chr3_3:3485649-3485668 Msa0438730:five_prime_UTR 35.0%
AAAAAAATCCCACCATTGTC+AGG + chr3_3:3485789-3485808 None:intergenic 35.0%
!!! ATGGTGGGATTTTTTTGCAA+TGG - chr3_3:3485793-3485812 Msa0438730:intron 35.0%
! TCTGACATTGATTAACATGC+AGG - chr3_3:3485864-3485883 Msa0438730:five_prime_UTR 35.0%
TATGACATGCTTGTGGAAAA+AGG - chr3_3:3486039-3486058 Msa0438730:intron 35.0%
TCAATTTACTTCCCTCCCTT+CGG - chr3_3:3479345-3479364 Msa0438730:three_prime_UTR 40.0%
! TTGAAAGCTGTTGGTGAGTT+CGG - chr3_3:3479490-3479509 Msa0438730:three_prime_UTR 40.0%
GAGAGTTGAAAGCAACGAAA+TGG - chr3_3:3479512-3479531 Msa0438730:three_prime_UTR 40.0%
TTGAAAGCAACGAAATGGGT+CGG - chr3_3:3479517-3479536 Msa0438730:three_prime_UTR 40.0%
TTAGAAACTTCATCTGCAGC+AGG - chr3_3:3479759-3479778 Msa0438730:intron 40.0%
GCAGGAATTGGAATAACTGA+TGG - chr3_3:3479851-3479870 Msa0438730:intron 40.0%
GTTCATACCATAACCCGATA+CGG + chr3_3:3480022-3480041 None:intergenic 40.0%
AACAGGAACAGCTGAAAGAA+GGG + chr3_3:3480044-3480063 None:intergenic 40.0%
AAACAGGAACAGCTGAAAGA+AGG + chr3_3:3480045-3480064 None:intergenic 40.0%
TATGAATGAAGCTTCCAGCA+TGG - chr3_3:3480079-3480098 Msa0438730:CDS 40.0%
TTCCGCTTATATGTCCAGAT+TGG - chr3_3:3480170-3480189 Msa0438730:CDS 40.0%
CTCCAATCTGGACATATAAG+CGG + chr3_3:3480175-3480194 None:intergenic 40.0%
! GGAAGAGATGTTACTTCTTG+AGG - chr3_3:3480201-3480220 Msa0438730:CDS 40.0%
! TTTTAGGCCCTTGACATGTA+TGG - chr3_3:3480349-3480368 Msa0438730:intron 40.0%
CCCAAATCCATACATGTCAA+GGG + chr3_3:3480359-3480378 None:intergenic 40.0%
CCCTTGACATGTATGGATTT+GGG - chr3_3:3480356-3480375 Msa0438730:intron 40.0%
TCCCAAATCCATACATGTCA+AGG + chr3_3:3480360-3480379 None:intergenic 40.0%
CTTACAGGTACAGGAAAACA+TGG + chr3_3:3480466-3480485 None:intergenic 40.0%
TACACCATGCATTCAAACAC+AGG + chr3_3:3480527-3480546 None:intergenic 40.0%
CGGTTACATAGCATGTCTTT+AGG + chr3_3:3480729-3480748 None:intergenic 40.0%
AGACATGCTATGTAACCGAT+TGG - chr3_3:3480731-3480750 Msa0438730:intron 40.0%
TCCTTCTCTACACAACCAAT+CGG + chr3_3:3480749-3480768 None:intergenic 40.0%
TAGCTATGTGTGTGTAACCA+AGG - chr3_3:3480779-3480798 Msa0438730:intron 40.0%
AGCTATGTGTGTGTAACCAA+GGG - chr3_3:3480780-3480799 Msa0438730:intron 40.0%
CATGATCTATATACTCCCCT+TGG + chr3_3:3480799-3480818 None:intergenic 40.0%
AGCTACTCGTGTAAGAAGTT+TGG + chr3_3:3480826-3480845 None:intergenic 40.0%
TGTATTCACCAAGTCTTGGA+GGG + chr3_3:3480860-3480879 None:intergenic 40.0%
ATGTATTCACCAAGTCTTGG+AGG + chr3_3:3480861-3480880 None:intergenic 40.0%
! AATACATCTTCTAGCTAGCC+TGG - chr3_3:3480874-3480893 Msa0438730:intron 40.0%
GAGACAATTGAGCTCACAAA+TGG - chr3_3:3481074-3481093 Msa0438730:CDS 40.0%
! AATACAGTGGCTCAAGTTGT+TGG + chr3_3:3481259-3481278 None:intergenic 40.0%
GAGATACATGTCTTGCATGT+TGG - chr3_3:3481330-3481349 Msa0438730:five_prime_UTR 40.0%
TCTTGCATGTTGGAAGATCA+AGG - chr3_3:3481340-3481359 Msa0438730:five_prime_UTR 40.0%
TTTCACTGACAGTATCTGTC+TGG - chr3_3:3481422-3481441 Msa0438730:five_prime_UTR 40.0%
!! GACCCAGTTTTTGGAAAGTT+TGG - chr3_3:3481444-3481463 Msa0438730:five_prime_UTR 40.0%
TGCTCATCAGGAATCTATAG+TGG + chr3_3:3481540-3481559 None:intergenic 40.0%
! TTTTACTGGTCACTTCCCTT+TGG - chr3_3:3481757-3481776 Msa0438730:intron 40.0%
! GAAGAACCTCTCTTTTCTGA+TGG - chr3_3:3481963-3481982 Msa0438730:intron 40.0%
!! CAGCTCTGAAGAATCTAAGA+AGG - chr3_3:3482065-3482084 Msa0438730:intron 40.0%
CAAGCTATACATTGTACCTG+AGG + chr3_3:3482124-3482143 None:intergenic 40.0%
! AATGATGGAGTTAAGGTGGA+AGG - chr3_3:3482277-3482296 Msa0438730:intron 40.0%
AAAGATCAGTGGCATCAAAC+TGG + chr3_3:3482578-3482597 None:intergenic 40.0%
! TGTTATCCCATAGTTTGTCC+AGG + chr3_3:3482714-3482733 None:intergenic 40.0%
! CTTGTTGTATGTTGTGCTCA+GGG + chr3_3:3482887-3482906 None:intergenic 40.0%
GATGTGTTAGGAATAGAGAC+CGG + chr3_3:3483096-3483115 None:intergenic 40.0%
TCTATTCCTAACACATCCCA+TGG - chr3_3:3483099-3483118 Msa0438730:intron 40.0%
GCTGCAAACCCAATAATTCA+AGG + chr3_3:3483215-3483234 None:intergenic 40.0%
GCCCAACCCAAATTCAAATA+TGG + chr3_3:3483264-3483283 None:intergenic 40.0%
CCGAATTTGTGCGTTGAAAT+AGG + chr3_3:3483286-3483305 None:intergenic 40.0%
CTATTCGGCTACTCATTATC+GGG + chr3_3:3483434-3483453 None:intergenic 40.0%
CCTATTCGGCTACTCATTAT+CGG + chr3_3:3483435-3483454 None:intergenic 40.0%
CTACATTCAATTGGAGTTGG+AGG + chr3_3:3483651-3483670 None:intergenic 40.0%
TAGTAGAATCTCAAGCAGGT+CGG - chr3_3:3483955-3483974 Msa0438730:intron 40.0%
CCACTCAACACTTTCATAGA+AGG + chr3_3:3484023-3484042 None:intergenic 40.0%
!! CCTTCTATGAAAGTGTTGAG+TGG - chr3_3:3484020-3484039 Msa0438730:intron 40.0%
! AGTGGGTACAATTCTAAGAG+AGG - chr3_3:3484038-3484057 Msa0438730:intron 40.0%
! CAATGATGCTGAGCAAGTTT+TGG - chr3_3:3484082-3484101 Msa0438730:intron 40.0%
!! TGAGCAAGTTTTGGCAGAAA+TGG - chr3_3:3484091-3484110 Msa0438730:intron 40.0%
TGTCGTGTTAACTCAGAATC+AGG + chr3_3:3484343-3484362 None:intergenic 40.0%
TAACACGACATCTGTCATTG+TGG - chr3_3:3484353-3484372 Msa0438730:intron 40.0%
CACAGGATTGTGGCAATAAA+AGG + chr3_3:3484410-3484429 None:intergenic 40.0%
! AAAAGTACAAGGTCTTCACG+CGG - chr3_3:3484620-3484639 Msa0438730:intron 40.0%
!! AGTTGGTGAAAAGAAGGAAC+AGG + chr3_3:3484854-3484873 None:intergenic 40.0%
AAATCTGTAGTAGCAGGAGT+TGG + chr3_3:3484871-3484890 None:intergenic 40.0%
GATGCAAAATCTGTAGTAGC+AGG + chr3_3:3484877-3484896 None:intergenic 40.0%
TTCCATTTGCAATGTCTTGC+AGG - chr3_3:3485322-3485341 Msa0438730:intron 40.0%
TTCCTGCAAGACATTGCAAA+TGG + chr3_3:3485327-3485346 None:intergenic 40.0%
AGGACAAAAGAAGCTGAACA+AGG - chr3_3:3485404-3485423 Msa0438730:intron 40.0%
AATGGTCAGATTGGAACAAG+TGG - chr3_3:3485440-3485459 Msa0438730:five_prime_UTR 40.0%
ATGGTCAGATTGGAACAAGT+GGG - chr3_3:3485441-3485460 Msa0438730:five_prime_UTR 40.0%
TGTCCTTGCGATATCTTGTA+TGG + chr3_3:3485576-3485595 None:intergenic 40.0%
GAATGATGTGTACACAACTC+AGG + chr3_3:3486236-3486255 None:intergenic 40.0%
!! TCAGTTCTGGTTCAACCGAA+GGG + chr3_3:3479363-3479382 None:intergenic 45.0%
!! TTCAGTTCTGGTTCAACCGA+AGG + chr3_3:3479364-3479383 None:intergenic 45.0%
CCAACAGCTTTCAACTCGAT+TGG + chr3_3:3479484-3479503 None:intergenic 45.0%
!! CCAATCGAGTTGAAAGCTGT+TGG - chr3_3:3479481-3479500 Msa0438730:three_prime_UTR 45.0%
TGCATTGAGTGCTTCTCTGT+CGG - chr3_3:3479965-3479984 Msa0438730:intron 45.0%
CAATCATCCGTATCGGGTTA+TGG - chr3_3:3480012-3480031 Msa0438730:CDS 45.0%
GCCCTTGACATGTATGGATT+TGG - chr3_3:3480355-3480374 Msa0438730:intron 45.0%
GACTTGATTTCCCTTTGCCA+TGG + chr3_3:3480620-3480639 None:intergenic 45.0%
! ACCGATTGGTTGTGTAGAGA+AGG - chr3_3:3480745-3480764 Msa0438730:intron 45.0%
GCTATGTGTGTGTAACCAAG+GGG - chr3_3:3480781-3480800 Msa0438730:intron 45.0%
AGGCAATGTGTAAGGTAGCT+TGG - chr3_3:3481011-3481030 Msa0438730:CDS 45.0%
GCATGTTGGAAGATCAAGGT+TGG - chr3_3:3481344-3481363 Msa0438730:five_prime_UTR 45.0%
TGTTGGAAGATCAAGGTTGG+TGG - chr3_3:3481347-3481366 Msa0438730:five_prime_UTR 45.0%
! ATCTGTCTGGACCCAGTTTT+TGG - chr3_3:3481435-3481454 Msa0438730:five_prime_UTR 45.0%
! TCTAGATAGGCTTGCTCATC+AGG + chr3_3:3481552-3481571 None:intergenic 45.0%
TTCAGAGTCAGCTCTGCATT+TGG + chr3_3:3481942-3481961 None:intergenic 45.0%
GAGCTGAGATGTTGCAACAA+AGG + chr3_3:3482051-3482070 None:intergenic 45.0%
ACAATGTCTAGGCTAACCTC+AGG - chr3_3:3482105-3482124 Msa0438730:intron 45.0%
! CCTTGTTGTATGTTGTGCTC+AGG + chr3_3:3482888-3482907 None:intergenic 45.0%
CCTGAGCACAACATACAACA+AGG - chr3_3:3482885-3482904 Msa0438730:intron 45.0%
! ACGCACAAATTCGGCTTGTA+AGG - chr3_3:3483292-3483311 Msa0438730:intron 45.0%
ACGTTCAATCATGAGCGTGA+GGG + chr3_3:3483391-3483410 None:intergenic 45.0%
CTACTCATTATCGGGTCACT+CGG + chr3_3:3483426-3483445 None:intergenic 45.0%
CCGATAATGAGTAGCCGAAT+AGG - chr3_3:3483432-3483451 Msa0438730:intron 45.0%
ATGAGTAGCCGAATAGGTCT+AGG - chr3_3:3483438-3483457 Msa0438730:intron 45.0%
TCTGGGAGTCTCCCAATAAA+TGG + chr3_3:3483572-3483591 None:intergenic 45.0%
! ATATTTGGAGTTGGAGGTCC+TGG - chr3_3:3483606-3483625 Msa0438730:intron 45.0%
! TATTTGGAGTTGGAGGTCCT+GGG - chr3_3:3483607-3483626 Msa0438730:intron 45.0%
TCAAGAACACAGAGGAGTGA+CGG + chr3_3:3483706-3483725 None:intergenic 45.0%
AGGAAGACTCAAGAACACAG+AGG + chr3_3:3483714-3483733 None:intergenic 45.0%
CTCAGAATCAGGTAATCCGA+GGG + chr3_3:3484332-3484351 None:intergenic 45.0%
ACTCAGAATCAGGTAATCCG+AGG + chr3_3:3484333-3484352 None:intergenic 45.0%
! TCACTCAAAAGAAGAGCACG+AGG - chr3_3:3484645-3484664 Msa0438730:intron 45.0%
!! AGCAGGAGTTGGTGAAAAGA+AGG + chr3_3:3484860-3484879 None:intergenic 45.0%
AGTGAACTATGTGACCAGAG+GGG + chr3_3:3485003-3485022 None:intergenic 45.0%
GAGTGAACTATGTGACCAGA+GGG + chr3_3:3485004-3485023 None:intergenic 45.0%
TGAGTGAACTATGTGACCAG+AGG + chr3_3:3485005-3485024 None:intergenic 45.0%
AGTTTAGGAGGGGGATATGT+TGG - chr3_3:3485166-3485185 Msa0438730:five_prime_UTR 45.0%
TTGCAGGAAGCTAGAATTGC+TGG - chr3_3:3485338-3485357 Msa0438730:intron 45.0%
GCTACTACCAAGCTCTACTT+TGG + chr3_3:3485492-3485511 None:intergenic 45.0%
ATGATGCTGTAGTGCCCTTA+TGG + chr3_3:3485526-3485545 None:intergenic 45.0%
CTGCCATACAAGATATCGCA+AGG - chr3_3:3485570-3485589 Msa0438730:intron 45.0%
TCGCAAGGACACTAGAAGAA+TGG - chr3_3:3485585-3485604 Msa0438730:intron 45.0%
CGCAAGGACACTAGAAGAAT+GGG - chr3_3:3485586-3485605 Msa0438730:intron 45.0%
TGGCCTGCCTTCAGTTTATT+TGG - chr3_3:3485813-3485832 Msa0438730:intron 45.0%
GGCCTGCCTTCAGTTTATTT+GGG - chr3_3:3485814-3485833 Msa0438730:intron 45.0%
AGCCCAAATAAACTGAAGGC+AGG + chr3_3:3485819-3485838 None:intergenic 45.0%
CCTTCAGTTTATTTGGGCTG+CGG - chr3_3:3485820-3485839 Msa0438730:intron 45.0%
CTTCAGTTTATTTGGGCTGC+GGG - chr3_3:3485821-3485840 Msa0438730:intron 45.0%
TTCAGTTTATTTGGGCTGCG+GGG - chr3_3:3485822-3485841 Msa0438730:intron 45.0%
GTAATGTTGAGGTAGTGTGG+CGG + chr3_3:3485922-3485941 None:intergenic 45.0%
CACACTACCTCAACATTACG+CGG - chr3_3:3485923-3485942 Msa0438730:intron 45.0%
GCATAATCCGCGTAATGTTG+AGG + chr3_3:3485933-3485952 None:intergenic 45.0%
CTTGGAGAGAACTTGAACAG+TGG + chr3_3:3486003-3486022 None:intergenic 45.0%
CGCCGAAAAGAAGTGACAAT+AGG + chr3_3:3486261-3486280 None:intergenic 45.0%
!! TAAAAAATAAAAAAAATTTC+AGG + chr3_3:3483734-3483753 None:intergenic 5.0%
!! TTCTGGTTCAACCGAAGGGA+GGG + chr3_3:3479359-3479378 None:intergenic 50.0%
ATGTCCAGATTGGAGTGCAG+AGG - chr3_3:3480180-3480199 Msa0438730:CDS 50.0%
TCTTCCTCTGCACTCCAATC+TGG + chr3_3:3480187-3480206 None:intergenic 50.0%
GCGACCTGTGTTTGAATGCA+TGG - chr3_3:3480520-3480539 Msa0438730:intron 50.0%
CAAAGAGGAACTCCTTGCCA+TGG - chr3_3:3480600-3480619 Msa0438730:intron 50.0%
GAACTCCTTGCCATGGCAAA+GGG - chr3_3:3480607-3480626 Msa0438730:intron 50.0%
GATTTCCCTTTGCCATGGCA+AGG + chr3_3:3480615-3480634 None:intergenic 50.0%
ATGCCAATCCCTCCAAGACT+TGG - chr3_3:3480849-3480868 Msa0438730:intron 50.0%
TCACCAAGTCTTGGAGGGAT+TGG + chr3_3:3480855-3480874 None:intergenic 50.0%
CTCACAAATGGCCAATGCCA+AGG - chr3_3:3481086-3481105 Msa0438730:CDS 50.0%
GTGCATGATACTGTACTCCC+CGG - chr3_3:3481821-3481840 Msa0438730:intron 50.0%
AGAGTCAGCTCTGCATTTGG+AGG + chr3_3:3481939-3481958 None:intergenic 50.0%
TGTTGTGCTCAGGGTAAGAG+AGG + chr3_3:3482878-3482897 None:intergenic 50.0%
GTGTGTCCATGGGATGTGTT+AGG + chr3_3:3483108-3483127 None:intergenic 50.0%
GGATACAACGTTGAAGGGTC+AGG + chr3_3:3483243-3483262 None:intergenic 50.0%
CGTTCAATCATGAGCGTGAG+GGG + chr3_3:3483390-3483409 None:intergenic 50.0%
GACGTTCAATCATGAGCGTG+AGG + chr3_3:3483392-3483411 None:intergenic 50.0%
ATTGGGAGACTCCCAGAAGT+CGG - chr3_3:3483575-3483594 Msa0438730:intron 50.0%
GTTGACTGCAGCAGAATGCA+TGG + chr3_3:3484743-3484762 None:intergenic 50.0%
TCTATGGGGCACAGTGAGAT+CGG + chr3_3:3484946-3484965 None:intergenic 50.0%
GAGTTACTACAACTCCCCTC+TGG - chr3_3:3484986-3485005 Msa0438730:intron 50.0%
ATATAGAGGACCCTCGAGCT+TGG - chr3_3:3485040-3485059 Msa0438730:five_prime_UTR 50.0%
AGAACCCAAACCAAGCTCGA+GGG + chr3_3:3485053-3485072 None:intergenic 50.0%
CGAAAACTGGATCACACAGC+AGG + chr3_3:3485077-3485096 None:intergenic 50.0%
TTATCAATCGCACCACCGAG+TGG - chr3_3:3485099-3485118 Msa0438730:intron 50.0%
CAAGCTGCAGCTCCAACTAT+TGG + chr3_3:3485227-3485246 None:intergenic 50.0%
TCCTGATATCAAGGATGCGC+CGG - chr3_3:3485547-3485566 Msa0438730:intron 50.0%
GCGATATCTTGTATGGCAGC+CGG + chr3_3:3485569-3485588 None:intergenic 50.0%
CCATTGTCAGGTGTAGGGAA+GGG + chr3_3:3485777-3485796 None:intergenic 50.0%
ACCATTGTCAGGTGTAGGGA+AGG + chr3_3:3485778-3485797 None:intergenic 50.0%
TTCCCTACACCTGACAATGG+TGG - chr3_3:3485777-3485796 Msa0438730:intron 50.0%
TCCCTACACCTGACAATGGT+GGG - chr3_3:3485778-3485797 Msa0438730:intron 50.0%
TCCCACCATTGTCAGGTGTA+GGG + chr3_3:3485782-3485801 None:intergenic 50.0%
ATCCCACCATTGTCAGGTGT+AGG + chr3_3:3485783-3485802 None:intergenic 50.0%
CCGCAGCCCAAATAAACTGA+AGG + chr3_3:3485823-3485842 None:intergenic 50.0%
CGCGTAATGTTGAGGTAGTG+TGG + chr3_3:3485925-3485944 None:intergenic 50.0%
!! GTTCTGGTTCAACCGAAGGG+AGG + chr3_3:3479360-3479379 None:intergenic 55.0%
TGTTGTCGTCAGCAGCAACG+GGG + chr3_3:3479569-3479588 None:intergenic 55.0%
CTGTTGTCGTCAGCAGCAAC+GGG + chr3_3:3479570-3479589 None:intergenic 55.0%
CCTGTTGTCGTCAGCAGCAA+CGG + chr3_3:3479571-3479590 None:intergenic 55.0%
GGAACTCCTTGCCATGGCAA+AGG - chr3_3:3480606-3480625 Msa0438730:intron 55.0%
ACACATAGCCTCGGGCTTGA+AGG - chr3_3:3482748-3482767 Msa0438730:intron 55.0%
GTGTTAAGCCTTCAAGCCCG+AGG + chr3_3:3482759-3482778 None:intergenic 55.0%
CAACAGGCACGTGTGTCCAT+GGG + chr3_3:3483118-3483137 None:intergenic 55.0%
! ACAGAGGAGTGACGGAGACT+GGG + chr3_3:3483698-3483717 None:intergenic 55.0%
TCTCAAGCAGGTCGGAGCAT+CGG - chr3_3:3483963-3483982 Msa0438730:intron 55.0%
AGGACCCTCGAGCTTGGTTT+GGG - chr3_3:3485046-3485065 Msa0438730:five_prime_UTR 55.0%
CAGAACCCAAACCAAGCTCG+AGG + chr3_3:3485054-3485073 None:intergenic 55.0%
!! ACCACCGAGTGGTGATGGTA+GGG - chr3_3:3485110-3485129 Msa0438730:intron 55.0%
AACCCCCTACCATCACCACT+CGG + chr3_3:3485117-3485136 None:intergenic 55.0%
TGTCAGGTGTAGGGAAGGGA+GGG + chr3_3:3485773-3485792 None:intergenic 55.0%
TTGTCAGGTGTAGGGAAGGG+AGG + chr3_3:3485774-3485793 None:intergenic 55.0%
CCCTTCCCTACACCTGACAA+TGG - chr3_3:3485774-3485793 Msa0438730:intron 55.0%
!! CGGGGAGCGTTCTATCTGAT+TGG - chr3_3:3485840-3485859 Msa0438730:intron 55.0%
GTTGTCGTCAGCAGCAACGG+GGG + chr3_3:3479568-3479587 None:intergenic 60.0%
CCGTTGCTGCTGACGACAAC+AGG - chr3_3:3479568-3479587 Msa0438730:CDS 60.0%
CCAACAGGCACGTGTGTCCA+TGG + chr3_3:3483119-3483138 None:intergenic 60.0%
CCATGGACACACGTGCCTGT+TGG - chr3_3:3483116-3483135 Msa0438730:intron 60.0%
GGAGGTCCTGGGTTCAAACC+CGG - chr3_3:3483618-3483637 Msa0438730:intron 60.0%
GAGGTCCTGGGTTCAAACCC+GGG - chr3_3:3483619-3483638 Msa0438730:intron 60.0%
ACGGAGACTGGGACCCGATT+TGG + chr3_3:3483687-3483706 None:intergenic 60.0%
! CACAGAGGAGTGACGGAGAC+TGG + chr3_3:3483699-3483718 None:intergenic 60.0%
GAGGACCCTCGAGCTTGGTT+TGG - chr3_3:3485045-3485064 Msa0438730:five_prime_UTR 60.0%
ATCGCACCACCGAGTGGTGA+TGG - chr3_3:3485105-3485124 Msa0438730:intron 60.0%
!! CACCACCGAGTGGTGATGGT+AGG - chr3_3:3485109-3485128 Msa0438730:intron 60.0%
!! CCACCGAGTGGTGATGGTAG+GGG - chr3_3:3485111-3485130 Msa0438730:intron 60.0%
!! CACCGAGTGGTGATGGTAGG+GGG - chr3_3:3485112-3485131 Msa0438730:intron 60.0%
TAGCCCGCGCGGTATCCATA+AGG - chr3_3:3485508-3485527 Msa0438730:intron 60.0%
AGCCCGCGCGGTATCCATAA+GGG - chr3_3:3485509-3485528 Msa0438730:intron 60.0%
TGCCCTTATGGATACCGCGC+GGG + chr3_3:3485514-3485533 None:intergenic 60.0%
GTGCCCTTATGGATACCGCG+CGG + chr3_3:3485515-3485534 None:intergenic 60.0%
GCCGGCGCATCCTTGATATC+AGG + chr3_3:3485551-3485570 None:intergenic 60.0%
TCCTGGGTTCAAACCCGGGC+AGG - chr3_3:3483623-3483642 Msa0438730:intron 65.0%
CCTGGGTTCAAACCCGGGCA+GGG - chr3_3:3483624-3483643 Msa0438730:intron 65.0%
TGGAGTTGGAGGTCCCTGCC+CGG + chr3_3:3483640-3483659 None:intergenic 65.0%
CCCCTACCATCACCACTCGG+TGG + chr3_3:3485114-3485133 None:intergenic 65.0%
! GAGCTTGGTAGTAGCCCGCG+CGG - chr3_3:3485497-3485516 Msa0438730:intron 65.0%
! AACGGGGGAGGAGCGTGACG+CGG + chr3_3:3479553-3479572 None:intergenic 70.0%
GTCGTCAGCAGCAACGGGGG+AGG + chr3_3:3479565-3479584 None:intergenic 70.0%
CCCTGCCCGGGTTTGAACCC+AGG + chr3_3:3483627-3483646 None:intergenic 70.0%
GGAGTTGGAGGTCCCTGCCC+GGG + chr3_3:3483639-3483658 None:intergenic 70.0%
! GGGAGGAGCGTGACGCGGCA+CGG + chr3_3:3479548-3479567 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 3479343 3486301 3479343 ID=Msa0438730;Name=Msa0438730
chr3_3 mRNA 3479343 3486301 3479343 ID=Msa0438730-mRNA-1;Parent=Msa0438730;Name=Msa0438730-mRNA-1;_AED=0.13;_eAED=0.13;_QI=1486|1|1|1|1|0.91|12|221|242
chr3_3 exon 3479343 3479758 3479343 ID=Msa0438730-mRNA-1:exon:841;Parent=Msa0438730-mRNA-1
chr3_3 exon 3479995 3480300 3479995 ID=Msa0438730-mRNA-1:exon:840;Parent=Msa0438730-mRNA-1
chr3_3 exon 3480918 3481683 3480918 ID=Msa0438730-mRNA-1:exon:839;Parent=Msa0438730-mRNA-1
chr3_3 exon 3483346 3483423 3483346 ID=Msa0438730-mRNA-1:exon:838;Parent=Msa0438730-mRNA-1
chr3_3 exon 3483518 3483576 3483518 ID=Msa0438730-mRNA-1:exon:837;Parent=Msa0438730-mRNA-1
chr3_3 exon 3483653 3483713 3483653 ID=Msa0438730-mRNA-1:exon:836;Parent=Msa0438730-mRNA-1
chr3_3 exon 3484998 3485070 3484998 ID=Msa0438730-mRNA-1:exon:835;Parent=Msa0438730-mRNA-1
chr3_3 exon 3485164 3485289 3485164 ID=Msa0438730-mRNA-1:exon:834;Parent=Msa0438730-mRNA-1
chr3_3 exon 3485422 3485487 3485422 ID=Msa0438730-mRNA-1:exon:833;Parent=Msa0438730-mRNA-1
chr3_3 exon 3485611 3485789 3485611 ID=Msa0438730-mRNA-1:exon:832;Parent=Msa0438730-mRNA-1
chr3_3 exon 3485864 3485922 3485864 ID=Msa0438730-mRNA-1:exon:831;Parent=Msa0438730-mRNA-1
chr3_3 exon 3486055 3486301 3486055 ID=Msa0438730-mRNA-1:exon:830;Parent=Msa0438730-mRNA-1
chr3_3 five_prime_UTR 3486055 3486301 3486055 ID=Msa0438730-mRNA-1:five_prime_utr;Parent=Msa0438730-mRNA-1
chr3_3 five_prime_UTR 3485864 3485922 3485864 ID=Msa0438730-mRNA-1:five_prime_utr;Parent=Msa0438730-mRNA-1
chr3_3 five_prime_UTR 3485611 3485789 3485611 ID=Msa0438730-mRNA-1:five_prime_utr;Parent=Msa0438730-mRNA-1
chr3_3 five_prime_UTR 3485422 3485487 3485422 ID=Msa0438730-mRNA-1:five_prime_utr;Parent=Msa0438730-mRNA-1
chr3_3 five_prime_UTR 3485164 3485289 3485164 ID=Msa0438730-mRNA-1:five_prime_utr;Parent=Msa0438730-mRNA-1
chr3_3 five_prime_UTR 3484998 3485070 3484998 ID=Msa0438730-mRNA-1:five_prime_utr;Parent=Msa0438730-mRNA-1
chr3_3 five_prime_UTR 3483653 3483713 3483653 ID=Msa0438730-mRNA-1:five_prime_utr;Parent=Msa0438730-mRNA-1
chr3_3 five_prime_UTR 3483518 3483576 3483518 ID=Msa0438730-mRNA-1:five_prime_utr;Parent=Msa0438730-mRNA-1
chr3_3 five_prime_UTR 3483346 3483423 3483346 ID=Msa0438730-mRNA-1:five_prime_utr;Parent=Msa0438730-mRNA-1
chr3_3 five_prime_UTR 3481146 3481683 3481146 ID=Msa0438730-mRNA-1:five_prime_utr;Parent=Msa0438730-mRNA-1
chr3_3 CDS 3480918 3481145 3480918 ID=Msa0438730-mRNA-1:cds;Parent=Msa0438730-mRNA-1
chr3_3 CDS 3479995 3480300 3479995 ID=Msa0438730-mRNA-1:cds;Parent=Msa0438730-mRNA-1
chr3_3 CDS 3479564 3479758 3479564 ID=Msa0438730-mRNA-1:cds;Parent=Msa0438730-mRNA-1
chr3_3 three_prime_UTR 3479343 3479563 3479343 ID=Msa0438730-mRNA-1:three_prime_utr;Parent=Msa0438730-mRNA-1
Gene Sequence

>Msa0438730

ATGAAAAATCTTGACAGGTTAGATGAACGAAAGCGCAGAAAAGATTTTATACTTGAAAGAAATTTACTTTGTCCCAATCCTTTTGAGAAATATCTCTCACCTGAAGAGCTTCAAATATGTGAAAAGTACAAGGTCTTCACGCGGTTTCACTCAAAAGAAGAGCACGAGGAGTTGCTAAAAACTATTATTAAAGAACACCGACTTGCCAAAAGAATACAAGACTTAAAGGAAGCTAGAATTGCTGGCTGTGTAACTGCTGCTGAAGCTTATCAGTTTATTGAACAAAAGAGGACAAAAGAAGCTGAACAAGGTGACTGTAAAGAAAATGGTCAGATTGGAACAAGTGGGAAGACTTCACAGAGACCAAATTTTTCCAAAGTAGAGCTTGGTAGTAGCCCGCGCGGTATCCATAAGGGCACTACAGCATCATTTCCTGATATCAAGGATGCGCCGGCTGCCATACAAGATATCGCAAGGACACTAGAAGAATGGGATATCAGTGATTTTGATGGGGCTGAGTTGCTTTCTGAATCTGAAATAAAGCTTTGTAATGAGATCAGAATGCTGCCGCCACACTACCTCAACATTACGCGGATTATGCAATTAGAAATTTCGGAGGGCAGAGTAACCAATAAATCTGATGCATATCCACTGTTCAAGTTCTCTCCAAGCAAGATTGATAGAATTTATGACATGCTTGTGGAAAAAGGAGTTGTTCAAGAAAAATGA
Protein sequence

>Msa0438730

MKNLDRLDERKRRKDFILERNLLCPNPFEKYLSPEELQICEKYKVFTRFHSKEEHEELLKTIIKEHRLAKRIQDLKEARIAGCVTAAEAYQFIEQKRTKEAEQGDCKENGQIGTSGKTSQRPNFSKVELGSSPRGIHKGTTASFPDIKDAPAAIQDIARTLEEWDISDFDGAELLSESEIKLCNEIRMLPPHYLNITRIMQLEISEGRVTNKSDAYPLFKFSPSKIDRIYDMLVEKGVVQEK*