Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231070 | XP_003592963.1 | 91.699 | 518 | 11 | 10 | 1 | 517 | 1 | 487 | 0.0 | 915 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231070 | sp|Q9C518|TCP8_ARATH | 46.714 | 426 | 129 | 17 | 75 | 476 | 13 | 364 | 1.50e-79 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231070 | G7INN6 | 91.699 | 518 | 11 | 10 | 1 | 517 | 1 | 487 | 0.0 | 915 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0231070 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0231070 | Msa0270590 | 0.849044 | 4.162379e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231070 | MtrunA17_Chr2g0277361 | 93.966 | 464 | 7 | 9 | 1 | 463 | 1 | 444 | 0.0 | 846 |
| Msa0231070 | MtrunA17_Chr5g0416581 | 92.045 | 88 | 6 | 1 | 129 | 215 | 61 | 148 | 1.91e-49 | 174 |
| Msa0231070 | MtrunA17_Chr7g0224581 | 52.632 | 152 | 62 | 3 | 106 | 253 | 21 | 166 | 3.44e-38 | 141 |
| Msa0231070 | MtrunA17_Chr1g0211941 | 80.488 | 82 | 13 | 1 | 125 | 206 | 27 | 105 | 4.39e-38 | 140 |
| Msa0231070 | MtrunA17_Chr1g0204001 | 56.303 | 119 | 48 | 1 | 104 | 222 | 38 | 152 | 1.11e-36 | 138 |
| Msa0231070 | MtrunA17_Chr1g0164881 | 75.000 | 84 | 18 | 1 | 119 | 202 | 20 | 100 | 1.04e-35 | 133 |
| Msa0231070 | MtrunA17_Chr8g0350941 | 78.947 | 76 | 16 | 0 | 131 | 206 | 77 | 152 | 2.09e-35 | 135 |
| Msa0231070 | MtrunA17_Chr1g0180911 | 80.282 | 71 | 14 | 0 | 126 | 196 | 41 | 111 | 8.95e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231070 | AT1G58100.1 | 46.714 | 426 | 129 | 17 | 75 | 476 | 13 | 364 | 1.52e-80 | 257 |
| Msa0231070 | AT1G35560.1 | 42.899 | 338 | 94 | 10 | 131 | 462 | 52 | 296 | 3.21e-59 | 199 |
| Msa0231070 | AT1G58100.2 | 41.549 | 426 | 127 | 19 | 75 | 476 | 13 | 340 | 7.78e-57 | 194 |
| Msa0231070 | AT1G72010.1 | 34.679 | 421 | 144 | 16 | 123 | 511 | 52 | 373 | 4.43e-45 | 162 |
| Msa0231070 | AT1G69690.1 | 58.599 | 157 | 38 | 3 | 129 | 273 | 46 | 187 | 1.63e-41 | 152 |
| Msa0231070 | AT5G23280.1 | 77.108 | 83 | 16 | 1 | 124 | 206 | 32 | 111 | 5.49e-37 | 137 |
| Msa0231070 | AT2G45680.1 | 57.600 | 125 | 41 | 3 | 88 | 211 | 39 | 152 | 4.83e-36 | 137 |
| Msa0231070 | AT5G08330.1 | 68.750 | 96 | 27 | 1 | 109 | 204 | 9 | 101 | 1.03e-35 | 133 |
| Msa0231070 | AT3G27010.2 | 51.969 | 127 | 45 | 2 | 69 | 195 | 29 | 139 | 1.97e-34 | 132 |
| Msa0231070 | AT3G27010.1 | 51.969 | 127 | 45 | 2 | 69 | 195 | 29 | 139 | 1.97e-34 | 132 |
| Msa0231070 | AT5G51910.1 | 78.205 | 78 | 16 | 1 | 130 | 206 | 52 | 129 | 8.63e-34 | 130 |
| Msa0231070 | AT5G51910.2 | 78.205 | 78 | 16 | 1 | 130 | 206 | 52 | 129 | 8.63e-34 | 130 |
| Msa0231070 | AT2G37000.1 | 80.000 | 60 | 12 | 0 | 134 | 193 | 43 | 102 | 3.52e-27 | 108 |
| Msa0231070 | AT5G41030.1 | 51.546 | 97 | 35 | 1 | 131 | 227 | 65 | 149 | 1.59e-26 | 108 |
| Msa0231070 | AT3G45150.1 | 61.905 | 63 | 24 | 0 | 131 | 193 | 14 | 76 | 1.14e-21 | 92.4 |
Find 146 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCCATCACCTTTCATTA+TGG | 0.235639 | 2_2:-3283805 | Msa0231070:CDS |
| CTTGTTGTTGGTGGTGGGGA+TGG | 0.241546 | 2_2:+3283883 | None:intergenic |
| AGGTTCAATGTTCCAGCTTC+TGG | 0.242129 | 2_2:-3282685 | Msa0231070:CDS |
| GTTTGAAGAAGGTTGAATAT+TGG | 0.260266 | 2_2:+3283773 | None:intergenic |
| TCATCAACAACAGGATGATA+TGG | 0.263411 | 2_2:-3283001 | Msa0231070:CDS |
| TTGAAGAAAATGGTTGAATT+TGG | 0.273936 | 2_2:+3283610 | None:intergenic |
| TTGTTGTTGGTGGTGGGGAT+GGG | 0.292871 | 2_2:+3283884 | None:intergenic |
| TTCCAGTTGACCAGAGAATT+AGG | 0.308053 | 2_2:-3283468 | Msa0231070:CDS |
| GACGGTGGTGGAGGAGGTGG+TGG | 0.325996 | 2_2:-3282970 | Msa0231070:CDS |
| AATTTGGTTGTTGTTGTTGT+TGG | 0.326907 | 2_2:+3283626 | None:intergenic |
| GATAGTCATTGTGAAGTATT+AGG | 0.328404 | 2_2:+3282406 | None:intergenic |
| GACTGAACATGAGGTGTAAA+AGG | 0.331793 | 2_2:+3282763 | None:intergenic |
| ATGATTCTTGTTGTTGGTGG+TGG | 0.333014 | 2_2:+3283877 | None:intergenic |
| CGGGGAGTGGAAGTACAATT+TGG | 0.342926 | 2_2:-3282858 | Msa0231070:CDS |
| TACCAACACGCGCCTCTGTT+AGG | 0.343048 | 2_2:-3283225 | Msa0231070:CDS |
| TCTTCTCCACTCTCATCATT+AGG | 0.347346 | 2_2:+3282433 | None:intergenic |
| TGTTGTTGGTGGTGGGGATG+GGG | 0.348885 | 2_2:+3283885 | None:intergenic |
| AGGCCATCACCTTTCATTAT+GGG | 0.359459 | 2_2:-3283804 | Msa0231070:CDS |
| GTGGGGATGGGGATGAATAT+TGG | 0.363141 | 2_2:+3283896 | None:intergenic |
| GAAGGTGACGGTGGTGGAGG+AGG | 0.367290 | 2_2:-3282976 | Msa0231070:CDS |
| GGCTGGGATTGTTCCGGTGC+CGG | 0.367521 | 2_2:+3283377 | None:intergenic |
| CTGTCCTTGGTGGATCGTTT+TGG | 0.369093 | 2_2:+3283555 | None:intergenic |
| GTTGTTGCTGTTGCTGTTGT+TGG | 0.372670 | 2_2:+3283181 | None:intergenic |
| TGGACGTGGTGGTTTACAAT+TGG | 0.382459 | 2_2:-3282632 | Msa0231070:CDS |
| TGATTCTTGTTGTTGGTGGT+GGG | 0.388715 | 2_2:+3283878 | None:intergenic |
| GTATCAACCATCACAGCATT+TGG | 0.390115 | 2_2:-3282602 | Msa0231070:CDS |
| GCGGTTGAAGTTGAAGAAAA+TGG | 0.393103 | 2_2:+3283600 | None:intergenic |
| GGCCTAATTCTCTGGTCAAC+TGG | 0.396838 | 2_2:+3283466 | None:intergenic |
| GTAGCCCACATGGCTGTTGC+CGG | 0.398412 | 2_2:+3282883 | None:intergenic |
| GGATTTGTGGCCTAATTCTC+TGG | 0.401966 | 2_2:+3283458 | None:intergenic |
| GATTCTTGTTGTTGGTGGTG+GGG | 0.404293 | 2_2:+3283879 | None:intergenic |
| GGTGGTGGAGGAGGTGGTGG+TGG | 0.404546 | 2_2:-3282967 | Msa0231070:CDS |
| TCATCAACATTCAATGTCAT+TGG | 0.411521 | 2_2:-3282476 | Msa0231070:CDS |
| GTGAGGATGATTCTTGTTGT+TGG | 0.411900 | 2_2:+3283871 | None:intergenic |
| TTGTTTCACCATCGGATTTG+TGG | 0.412133 | 2_2:+3283445 | None:intergenic |
| CCACTCTCATCATTAGGTTG+AGG | 0.418843 | 2_2:+3282439 | None:intergenic |
| GGTGACGGTGGTGGAGGAGG+TGG | 0.419720 | 2_2:-3282973 | Msa0231070:CDS |
| TATCAACCATCACAGCATTT+GGG | 0.420346 | 2_2:-3282601 | Msa0231070:CDS |
| GGACGTGGTGGTTTACAATT+GGG | 0.421245 | 2_2:-3282631 | Msa0231070:CDS |
| TTGTTGTTGTTGGATACATC+TGG | 0.423257 | 2_2:+3283636 | None:intergenic |
| GACGTTGAGCGTTGAGAAAT+TGG | 0.424642 | 2_2:+3283356 | None:intergenic |
| CCAGCTTCTGGTGGTGGTGG+TGG | 0.427315 | 2_2:-3282673 | Msa0231070:CDS |
| AAGAGTTGTTAACGTTGAAA+TGG | 0.427409 | 2_2:+3282515 | None:intergenic |
| GAGGGAGAAGAGTTTGAAGA+AGG | 0.435751 | 2_2:+3283762 | None:intergenic |
| GGTGGTGGTGTTGAATTTCA+AGG | 0.437658 | 2_2:-3282655 | Msa0231070:CDS |
| CAGATCTGGTGGCAATTGCC+AGG | 0.437859 | 2_2:+3283670 | None:intergenic |
| CTGATGAACGCTGATCAAAT+TGG | 0.440741 | 2_2:-3283156 | Msa0231070:CDS |
| GGGATGGGGATGAATATTGG+TGG | 0.440791 | 2_2:+3283899 | None:intergenic |
| GAAATTGGCTGGGATTGTTC+CGG | 0.446496 | 2_2:+3283371 | None:intergenic |
| GGCGAAGGTGACGGTGGTGG+AGG | 0.448389 | 2_2:-3282979 | Msa0231070:CDS |
| GGCTGTATCTGATTCCAACT+TGG | 0.449042 | 2_2:-3282575 | Msa0231070:CDS |
| ACAGCCATGTGGGCTACAGC+GGG | 0.455998 | 2_2:-3282877 | Msa0231070:CDS |
| ACCAACACGCGCCTCTGTTA+GGG | 0.456330 | 2_2:-3283224 | Msa0231070:CDS |
| GGAGCTTCTTCTTCTTCTGT+AGG | 0.458812 | 2_2:-3282946 | Msa0231070:CDS |
| GGTGATGGCCTTCCATCAAA+AGG | 0.462353 | 2_2:+3283816 | None:intergenic |
| AATGTTCCAGCTTCTGGTGG+TGG | 0.463360 | 2_2:-3282679 | Msa0231070:CDS |
| CAAAACAAATCATCAACAAC+AGG | 0.467153 | 2_2:-3283010 | Msa0231070:CDS |
| CTCAGTTACATTTCATGCCA+AGG | 0.474185 | 2_2:-3282705 | Msa0231070:CDS |
| CCATTCAATTGTTTCACCAT+CGG | 0.476071 | 2_2:+3283437 | None:intergenic |
| TTGAGCGTTGAGAAATTGGC+TGG | 0.476634 | 2_2:+3283360 | None:intergenic |
| ACACCTCATTGATGCTTCCC+TGG | 0.479655 | 2_2:-3283688 | Msa0231070:CDS |
| GCTTCTTCAACAAGCGGAGC+CGG | 0.481221 | 2_2:-3283415 | Msa0231070:CDS |
| TCGACCGTCAAATATGTTAC+CGG | 0.485929 | 2_2:-3282902 | Msa0231070:CDS |
| ATCATCGCTGCCACCGGCAC+CGG | 0.486326 | 2_2:-3283390 | Msa0231070:CDS |
| ATGGGCGAAGGTGACGGTGG+TGG | 0.487166 | 2_2:-3282982 | Msa0231070:CDS |
| AGGATGATTCTTGTTGTTGG+TGG | 0.493938 | 2_2:+3283874 | None:intergenic |
| ATGTGGGCTACAGCGGGGAG+TGG | 0.494234 | 2_2:-3282871 | Msa0231070:CDS |
| GCTGTATCTGATTCCAACTT+GGG | 0.503244 | 2_2:-3282574 | Msa0231070:CDS |
| AGGATTTGCAACCGCGGTGA+CGG | 0.503756 | 2_2:+3283578 | None:intergenic |
| ACGAGAATTACATGAGAAAA+CGG | 0.506668 | 2_2:-3283119 | Msa0231070:CDS |
| CTTAATGCTTATACAAGAGC+TGG | 0.507717 | 2_2:-3282538 | Msa0231070:CDS |
| CATGTTCAGTCTCAAAATCA+AGG | 0.508213 | 2_2:-3282751 | Msa0231070:CDS |
| AGCAGCAAACATACCCAAGT+TGG | 0.510675 | 2_2:+3282561 | None:intergenic |
| ACCATCACAGCATTTGGGAT+TGG | 0.511721 | 2_2:-3282596 | Msa0231070:CDS |
| GTTCCAGCTTCTGGTGGTGG+TGG | 0.513092 | 2_2:-3282676 | Msa0231070:CDS |
| CCGGCGATCATCGCTGCCAC+CGG | 0.513461 | 2_2:-3283396 | Msa0231070:CDS |
| CAAAAGTTGACGGCCGTGGC+CGG | 0.517328 | 2_2:-3283527 | Msa0231070:CDS |
| CATCAACAACAGGATGATAT+GGG | 0.517879 | 2_2:-3283000 | Msa0231070:CDS |
| CCGGTGGCAGCGATGATCGC+CGG | 0.518014 | 2_2:+3283396 | None:intergenic |
| CAAAATGAAAGTGGCGGTGA+TGG | 0.520198 | 2_2:-3283060 | Msa0231070:CDS |
| GTTGCTGTTGCTGTTGTTGG+TGG | 0.522829 | 2_2:+3283184 | None:intergenic |
| TGGTACGCAGCTTCTTCGTA+AGG | 0.525067 | 2_2:+3283243 | None:intergenic |
| TTCAATGTTCCAGCTTCTGG+TGG | 0.527514 | 2_2:-3282682 | Msa0231070:CDS |
| CCGATGGTGAAACAATTGAA+TGG | 0.532182 | 2_2:-3283437 | Msa0231070:CDS |
| GCATTCGAATTCTCCGGCCA+CGG | 0.535337 | 2_2:+3283514 | None:intergenic |
| TGCTGATGATGAGAATTTGA+AGG | 0.536098 | 2_2:+3283849 | None:intergenic |
| TCGCCGGCATTCGAATTCTC+CGG | 0.537835 | 2_2:+3283508 | None:intergenic |
| AACAACAATCAAAATGAAAG+TGG | 0.537872 | 2_2:-3283069 | Msa0231070:CDS |
| CACACAAAAGTTGACGGCCG+TGG | 0.538934 | 2_2:-3283531 | Msa0231070:CDS |
| TGGAAGAGGAGGTTCAGATC+TGG | 0.540562 | 2_2:+3283656 | None:intergenic |
| TGTTGTTGGTGGTGTTGATG+AGG | 0.542903 | 2_2:+3283195 | None:intergenic |
| ACAGTGTAGAGCCGCTGCTA+CGG | 0.544103 | 2_2:+3283328 | None:intergenic |
| AGAAGGTTGAATATTGGAGA+TGG | 0.548864 | 2_2:+3283779 | None:intergenic |
| GACAGGCACACAAAAGTTGA+CGG | 0.553080 | 2_2:-3283537 | Msa0231070:CDS |
| TTGTTGGATACATCTGGAAG+AGG | 0.554700 | 2_2:+3283642 | None:intergenic |
| ACTCCCCGCTGTAGCCCACA+TGG | 0.560090 | 2_2:+3282873 | None:intergenic |
| GTGATGGCCTTCCATCAAAA+GGG | 0.560570 | 2_2:+3283817 | None:intergenic |
| AACAGCCATGTGGGCTACAG+CGG | 0.560758 | 2_2:-3282878 | Msa0231070:CDS |
| GTTGCCGGTAACATATTTGA+CGG | 0.564703 | 2_2:+3282898 | None:intergenic |
| CAAAACGATCCACCAAGGAC+AGG | 0.572544 | 2_2:-3283554 | Msa0231070:CDS |
| GATGATATGGGCGAAGGTGA+CGG | 0.576236 | 2_2:-3282988 | Msa0231070:CDS |
| TGGGATTGTTCCGGTGCCGG+TGG | 0.577716 | 2_2:+3283380 | None:intergenic |
| ATTTGCAACCGCGGTGACGG+CGG | 0.577827 | 2_2:+3283581 | None:intergenic |
| GTTGAATTTCAAGGTGGACG+TGG | 0.582295 | 2_2:-3282646 | Msa0231070:CDS |
| ACTCTTGCTGCACATGTCGC+CGG | 0.582995 | 2_2:+3283492 | None:intergenic |
| ACCCTAACAGAGGCGCGTGT+TGG | 0.587028 | 2_2:+3283223 | None:intergenic |
| GTTGCAGCACCACCACTCAC+TGG | 0.588807 | 2_2:+3282829 | None:intergenic |
| TTCTCATCATCAGCAGCTTG+TGG | 0.593589 | 2_2:-3283841 | Msa0231070:CDS |
| TGGCCGGAGAATTCGAATGC+CGG | 0.599117 | 2_2:-3283511 | Msa0231070:CDS |
| GAGATGGAGCCCATAATGAA+AGG | 0.601517 | 2_2:+3283795 | None:intergenic |
| GAGCCCATAATGAAAGGTGA+TGG | 0.605278 | 2_2:+3283801 | None:intergenic |
| TTGGATACATCTGGAAGAGG+AGG | 0.605386 | 2_2:+3283645 | None:intergenic |
| TGAATGGCTTCTTCAACAAG+CGG | 0.607294 | 2_2:-3283421 | Msa0231070:CDS |
| ATGATGAGAATTTGAAGGTG+AGG | 0.608155 | 2_2:+3283854 | None:intergenic |
| GCCAATCCCAAATGCTGTGA+TGG | 0.613902 | 2_2:+3282595 | None:intergenic |
| GAAGCTGGAACATTGAACCT+TGG | 0.618817 | 2_2:+3282688 | None:intergenic |
| GGCATGAAATGTAACTGAGA+CGG | 0.621928 | 2_2:+3282709 | None:intergenic |
| GAGTGGAAGTACAATTTGGA+TGG | 0.623430 | 2_2:-3282854 | Msa0231070:CDS |
| CAAAACAACAAGCAGAAGAG+AGG | 0.623869 | 2_2:-3283924 | Msa0231070:CDS |
| GATATGGGCGAAGGTGACGG+TGG | 0.625298 | 2_2:-3282985 | Msa0231070:CDS |
| AGATCTGGTGGCAATTGCCA+GGG | 0.625421 | 2_2:+3283671 | None:intergenic |
| CCTCAACCTAATGATGAGAG+TGG | 0.625980 | 2_2:-3282439 | Msa0231070:CDS |
| CAACAGGATGATATGGGCGA+AGG | 0.628122 | 2_2:-3282994 | Msa0231070:CDS |
| AACTTCAACCGCCGTCACCG+CGG | 0.629301 | 2_2:-3283589 | Msa0231070:CDS |
| GAAAGTGGCGGTGATGGTGA+TGG | 0.632003 | 2_2:-3283054 | Msa0231070:CDS |
| AAGAGGAGGTTCAGATCTGG+TGG | 0.633145 | 2_2:+3283659 | None:intergenic |
| AACGTCTCACTCCGTAGCAG+CGG | 0.639266 | 2_2:-3283339 | Msa0231070:CDS |
| TGAGCGTTGAGAAATTGGCT+GGG | 0.640396 | 2_2:+3283361 | None:intergenic |
| GAATTAGGCCACAAATCCGA+TGG | 0.643115 | 2_2:-3283453 | Msa0231070:CDS |
| AGCATCAATGAGGTGTTGAG+TGG | 0.643841 | 2_2:+3283695 | None:intergenic |
| CTGAGAGGAGCTGATTTCGA+CGG | 0.644392 | 2_2:+3283297 | None:intergenic |
| AACAATCAAAATGAAAGTGG+CGG | 0.649002 | 2_2:-3283066 | Msa0231070:CDS |
| GCATCAATGAGGTGTTGAGT+GGG | 0.650961 | 2_2:+3283696 | None:intergenic |
| GTTACCGGCAACAGCCATGT+GGG | 0.654057 | 2_2:-3282887 | Msa0231070:CDS |
| TGTTACCGGCAACAGCCATG+TGG | 0.658913 | 2_2:-3282888 | Msa0231070:CDS |
| GAATTTCAAGGTGGACGTGG+TGG | 0.660159 | 2_2:-3282643 | Msa0231070:CDS |
| TCCTCCAAAACGATCCACCA+AGG | 0.665860 | 2_2:-3283559 | Msa0231070:CDS |
| CAGCCATGTGGGCTACAGCG+GGG | 0.667527 | 2_2:-3282876 | Msa0231070:CDS |
| AGAGGAGCTGATTTCGACGG+CGG | 0.670392 | 2_2:+3283300 | None:intergenic |
| AGACACAGACACAAAACATG+TGG | 0.683636 | 2_2:-3282786 | Msa0231070:CDS |
| TTGCCAGGGAAGCATCAATG+AGG | 0.690178 | 2_2:+3283685 | None:intergenic |
| ATTTGGATGGTACCAGTGAG+TGG | 0.695345 | 2_2:-3282841 | Msa0231070:CDS |
| TGGATGGTACCAGTGAGTGG+TGG | 0.715883 | 2_2:-3282838 | Msa0231070:CDS |
| TGAGGATGAAACCCTAACAG+AGG | 0.720008 | 2_2:+3283213 | None:intergenic |
| AGCGCGCTATGAAAACTGAG+AGG | 0.721312 | 2_2:+3283282 | None:intergenic |
| GGTGGTGTTGAATTTCAAGG+TGG | 0.744371 | 2_2:-3282652 | Msa0231070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTGTTTTGAAACTTTT+GGG | + | chr2_2:3283335-3283354 | None:intergenic | 20.0% |
| !!! | ATGATTTGTTTTGAAACTTT+TGG | + | chr2_2:3283336-3283355 | None:intergenic | 20.0% |
| !!! | TGATTTGTTTTGAAACTTTT+GGG | + | chr2_2:3283335-3283354 | None:intergenic | 20.0% |
| !!! | ATGATTTGTTTTGAAACTTT+TGG | + | chr2_2:3283336-3283355 | None:intergenic | 20.0% |
| ! | TTGAAGAAAATGGTTGAATT+TGG | + | chr2_2:3282746-3282765 | None:intergenic | 25.0% |
| ! | AACAACAATCAAAATGAAAG+TGG | - | chr2_2:3283284-3283303 | Msa0231070:CDS | 25.0% |
| ! | TTGAAGAAAATGGTTGAATT+TGG | + | chr2_2:3282746-3282765 | None:intergenic | 25.0% |
| ! | AACAACAATCAAAATGAAAG+TGG | - | chr2_2:3283284-3283303 | Msa0231070:CDS | 25.0% |
| GTTTGAAGAAGGTTGAATAT+TGG | + | chr2_2:3282583-3282602 | None:intergenic | 30.0% | |
| TGAAGAAGAAGAAGAAGAAT+TGG | + | chr2_2:3282616-3282635 | None:intergenic | 30.0% | |
| ! | AATTTGGTTGTTGTTGTTGT+TGG | + | chr2_2:3282730-3282749 | None:intergenic | 30.0% |
| ACGAGAATTACATGAGAAAA+CGG | - | chr2_2:3283234-3283253 | Msa0231070:CDS | 30.0% | |
| AACAATCAAAATGAAAGTGG+CGG | - | chr2_2:3283287-3283306 | Msa0231070:CDS | 30.0% | |
| CAAAACAAATCATCAACAAC+AGG | - | chr2_2:3283343-3283362 | Msa0231070:CDS | 30.0% | |
| ! | TCTGTAGGTAATTCTTTTTC+TGG | - | chr2_2:3283422-3283441 | Msa0231070:CDS | 30.0% |
| AAGAGTTGTTAACGTTGAAA+TGG | + | chr2_2:3283841-3283860 | None:intergenic | 30.0% | |
| TCATCAACATTCAATGTCAT+TGG | - | chr2_2:3283877-3283896 | Msa0231070:CDS | 30.0% | |
| GTTTGAAGAAGGTTGAATAT+TGG | + | chr2_2:3282583-3282602 | None:intergenic | 30.0% | |
| TGAAGAAGAAGAAGAAGAAT+TGG | + | chr2_2:3282616-3282635 | None:intergenic | 30.0% | |
| ! | AATTTGGTTGTTGTTGTTGT+TGG | + | chr2_2:3282730-3282749 | None:intergenic | 30.0% |
| ACGAGAATTACATGAGAAAA+CGG | - | chr2_2:3283234-3283253 | Msa0231070:CDS | 30.0% | |
| AACAATCAAAATGAAAGTGG+CGG | - | chr2_2:3283287-3283306 | Msa0231070:CDS | 30.0% | |
| CAAAACAAATCATCAACAAC+AGG | - | chr2_2:3283343-3283362 | Msa0231070:CDS | 30.0% | |
| ! | TCTGTAGGTAATTCTTTTTC+TGG | - | chr2_2:3283422-3283441 | Msa0231070:CDS | 30.0% |
| AAGAGTTGTTAACGTTGAAA+TGG | + | chr2_2:3283841-3283860 | None:intergenic | 30.0% | |
| TCATCAACATTCAATGTCAT+TGG | - | chr2_2:3283877-3283896 | Msa0231070:CDS | 30.0% | |
| ATGATGAGAATTTGAAGGTG+AGG | + | chr2_2:3282502-3282521 | None:intergenic | 35.0% | |
| ! | TGCTGATGATGAGAATTTGA+AGG | + | chr2_2:3282507-3282526 | None:intergenic | 35.0% |
| AGAAGGTTGAATATTGGAGA+TGG | + | chr2_2:3282577-3282596 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAATTGGA+GGG | + | chr2_2:3282612-3282631 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAATTGG+AGG | + | chr2_2:3282613-3282632 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTTGGATACATC+TGG | + | chr2_2:3282720-3282739 | None:intergenic | 35.0% |
| CCATTCAATTGTTTCACCAT+CGG | + | chr2_2:3282919-3282938 | None:intergenic | 35.0% | |
| TCATCAACAACAGGATGATA+TGG | - | chr2_2:3283352-3283371 | Msa0231070:CDS | 35.0% | |
| CATCAACAACAGGATGATAT+GGG | - | chr2_2:3283353-3283372 | Msa0231070:CDS | 35.0% | |
| !!! | TGATTTTGAGACTGAACATG+AGG | + | chr2_2:3283602-3283621 | None:intergenic | 35.0% |
| CATGTTCAGTCTCAAAATCA+AGG | - | chr2_2:3283602-3283621 | Msa0231070:CDS | 35.0% | |
| TATCAACCATCACAGCATTT+GGG | - | chr2_2:3283752-3283771 | Msa0231070:CDS | 35.0% | |
| CTTAATGCTTATACAAGAGC+TGG | - | chr2_2:3283815-3283834 | Msa0231070:CDS | 35.0% | |
| ATGATGAGAATTTGAAGGTG+AGG | + | chr2_2:3282502-3282521 | None:intergenic | 35.0% | |
| ! | TGCTGATGATGAGAATTTGA+AGG | + | chr2_2:3282507-3282526 | None:intergenic | 35.0% |
| AGAAGGTTGAATATTGGAGA+TGG | + | chr2_2:3282577-3282596 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAATTGGA+GGG | + | chr2_2:3282612-3282631 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAATTGG+AGG | + | chr2_2:3282613-3282632 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTTGGATACATC+TGG | + | chr2_2:3282720-3282739 | None:intergenic | 35.0% |
| CCATTCAATTGTTTCACCAT+CGG | + | chr2_2:3282919-3282938 | None:intergenic | 35.0% | |
| TCATCAACAACAGGATGATA+TGG | - | chr2_2:3283352-3283371 | Msa0231070:CDS | 35.0% | |
| CATCAACAACAGGATGATAT+GGG | - | chr2_2:3283353-3283372 | Msa0231070:CDS | 35.0% | |
| !!! | TGATTTTGAGACTGAACATG+AGG | + | chr2_2:3283602-3283621 | None:intergenic | 35.0% |
| CATGTTCAGTCTCAAAATCA+AGG | - | chr2_2:3283602-3283621 | Msa0231070:CDS | 35.0% | |
| TATCAACCATCACAGCATTT+GGG | - | chr2_2:3283752-3283771 | Msa0231070:CDS | 35.0% | |
| CTTAATGCTTATACAAGAGC+TGG | - | chr2_2:3283815-3283834 | Msa0231070:CDS | 35.0% | |
| CAAAACAACAAGCAGAAGAG+AGG | - | chr2_2:3282429-3282448 | Msa0231070:CDS | 40.0% | |
| !! | TGATTCTTGTTGTTGGTGGT+GGG | + | chr2_2:3282478-3282497 | None:intergenic | 40.0% |
| !! | ATGATTCTTGTTGTTGGTGG+TGG | + | chr2_2:3282479-3282498 | None:intergenic | 40.0% |
| !! | AGGATGATTCTTGTTGTTGG+TGG | + | chr2_2:3282482-3282501 | None:intergenic | 40.0% |
| ! | GTGAGGATGATTCTTGTTGT+TGG | + | chr2_2:3282485-3282504 | None:intergenic | 40.0% |
| AAGGCCATCACCTTTCATTA+TGG | - | chr2_2:3282548-3282567 | Msa0231070:CDS | 40.0% | |
| AGGCCATCACCTTTCATTAT+GGG | - | chr2_2:3282549-3282568 | Msa0231070:CDS | 40.0% | |
| TTGTTGGATACATCTGGAAG+AGG | + | chr2_2:3282714-3282733 | None:intergenic | 40.0% | |
| GCGGTTGAAGTTGAAGAAAA+TGG | + | chr2_2:3282756-3282775 | None:intergenic | 40.0% | |
| TTCCAGTTGACCAGAGAATT+AGG | - | chr2_2:3282885-3282904 | Msa0231070:CDS | 40.0% | |
| TTGTTTCACCATCGGATTTG+TGG | + | chr2_2:3282911-3282930 | None:intergenic | 40.0% | |
| CCGATGGTGAAACAATTGAA+TGG | - | chr2_2:3282916-3282935 | Msa0231070:CDS | 40.0% | |
| TGAATGGCTTCTTCAACAAG+CGG | - | chr2_2:3282932-3282951 | Msa0231070:CDS | 40.0% | |
| CTGATGAACGCTGATCAAAT+TGG | - | chr2_2:3283197-3283216 | Msa0231070:CDS | 40.0% | |
| TCGACCGTCAAATATGTTAC+CGG | - | chr2_2:3283451-3283470 | Msa0231070:CDS | 40.0% | |
| GTTGCCGGTAACATATTTGA+CGG | + | chr2_2:3283458-3283477 | None:intergenic | 40.0% | |
| ! | GAGTGGAAGTACAATTTGGA+TGG | - | chr2_2:3283499-3283518 | Msa0231070:CDS | 40.0% |
| AGACACAGACACAAAACATG+TGG | - | chr2_2:3283567-3283586 | Msa0231070:CDS | 40.0% | |
| GACTGAACATGAGGTGTAAA+AGG | + | chr2_2:3283593-3283612 | None:intergenic | 40.0% | |
| GGCATGAAATGTAACTGAGA+CGG | + | chr2_2:3283647-3283666 | None:intergenic | 40.0% | |
| CTCAGTTACATTTCATGCCA+AGG | - | chr2_2:3283648-3283667 | Msa0231070:CDS | 40.0% | |
| GTATCAACCATCACAGCATT+TGG | - | chr2_2:3283751-3283770 | Msa0231070:CDS | 40.0% | |
| GCTGTATCTGATTCCAACTT+GGG | - | chr2_2:3283779-3283798 | Msa0231070:CDS | 40.0% | |
| TCTTCTCCACTCTCATCATT+AGG | + | chr2_2:3283923-3283942 | None:intergenic | 40.0% | |
| CAAAACAACAAGCAGAAGAG+AGG | - | chr2_2:3282429-3282448 | Msa0231070:CDS | 40.0% | |
| !! | TGATTCTTGTTGTTGGTGGT+GGG | + | chr2_2:3282478-3282497 | None:intergenic | 40.0% |
| !! | ATGATTCTTGTTGTTGGTGG+TGG | + | chr2_2:3282479-3282498 | None:intergenic | 40.0% |
| !! | AGGATGATTCTTGTTGTTGG+TGG | + | chr2_2:3282482-3282501 | None:intergenic | 40.0% |
| ! | GTGAGGATGATTCTTGTTGT+TGG | + | chr2_2:3282485-3282504 | None:intergenic | 40.0% |
| AAGGCCATCACCTTTCATTA+TGG | - | chr2_2:3282548-3282567 | Msa0231070:CDS | 40.0% | |
| AGGCCATCACCTTTCATTAT+GGG | - | chr2_2:3282549-3282568 | Msa0231070:CDS | 40.0% | |
| TTGTTGGATACATCTGGAAG+AGG | + | chr2_2:3282714-3282733 | None:intergenic | 40.0% | |
| GCGGTTGAAGTTGAAGAAAA+TGG | + | chr2_2:3282756-3282775 | None:intergenic | 40.0% | |
| TTCCAGTTGACCAGAGAATT+AGG | - | chr2_2:3282885-3282904 | Msa0231070:CDS | 40.0% | |
| TTGTTTCACCATCGGATTTG+TGG | + | chr2_2:3282911-3282930 | None:intergenic | 40.0% | |
| CCGATGGTGAAACAATTGAA+TGG | - | chr2_2:3282916-3282935 | Msa0231070:CDS | 40.0% | |
| TGAATGGCTTCTTCAACAAG+CGG | - | chr2_2:3282932-3282951 | Msa0231070:CDS | 40.0% | |
| CTGATGAACGCTGATCAAAT+TGG | - | chr2_2:3283197-3283216 | Msa0231070:CDS | 40.0% | |
| TCGACCGTCAAATATGTTAC+CGG | - | chr2_2:3283451-3283470 | Msa0231070:CDS | 40.0% | |
| GTTGCCGGTAACATATTTGA+CGG | + | chr2_2:3283458-3283477 | None:intergenic | 40.0% | |
| ! | GAGTGGAAGTACAATTTGGA+TGG | - | chr2_2:3283499-3283518 | Msa0231070:CDS | 40.0% |
| AGACACAGACACAAAACATG+TGG | - | chr2_2:3283567-3283586 | Msa0231070:CDS | 40.0% | |
| GACTGAACATGAGGTGTAAA+AGG | + | chr2_2:3283593-3283612 | None:intergenic | 40.0% | |
| GGCATGAAATGTAACTGAGA+CGG | + | chr2_2:3283647-3283666 | None:intergenic | 40.0% | |
| CTCAGTTACATTTCATGCCA+AGG | - | chr2_2:3283648-3283667 | Msa0231070:CDS | 40.0% | |
| GTATCAACCATCACAGCATT+TGG | - | chr2_2:3283751-3283770 | Msa0231070:CDS | 40.0% | |
| GCTGTATCTGATTCCAACTT+GGG | - | chr2_2:3283779-3283798 | Msa0231070:CDS | 40.0% | |
| TCTTCTCCACTCTCATCATT+AGG | + | chr2_2:3283923-3283942 | None:intergenic | 40.0% | |
| !! | GATTCTTGTTGTTGGTGGTG+GGG | + | chr2_2:3282477-3282496 | None:intergenic | 45.0% |
| TTCTCATCATCAGCAGCTTG+TGG | - | chr2_2:3282512-3282531 | Msa0231070:CDS | 45.0% | |
| ! | TTGTGGTCCCTTTTGATGGA+AGG | - | chr2_2:3282529-3282548 | Msa0231070:CDS | 45.0% |
| GTGATGGCCTTCCATCAAAA+GGG | + | chr2_2:3282539-3282558 | None:intergenic | 45.0% | |
| GAGCCCATAATGAAAGGTGA+TGG | + | chr2_2:3282555-3282574 | None:intergenic | 45.0% | |
| GAGATGGAGCCCATAATGAA+AGG | + | chr2_2:3282561-3282580 | None:intergenic | 45.0% | |
| GAGGGAGAAGAGTTTGAAGA+AGG | + | chr2_2:3282594-3282613 | None:intergenic | 45.0% | |
| !! | GCATCAATGAGGTGTTGAGT+GGG | + | chr2_2:3282660-3282679 | None:intergenic | 45.0% |
| !! | AGCATCAATGAGGTGTTGAG+TGG | + | chr2_2:3282661-3282680 | None:intergenic | 45.0% |
| TTGGATACATCTGGAAGAGG+AGG | + | chr2_2:3282711-3282730 | None:intergenic | 45.0% | |
| !! | TTTTGGAGGATTTGCAACCG+CGG | + | chr2_2:3282784-3282803 | None:intergenic | 45.0% |
| ! | AACTTTTGTGTGCCTGTCCT+TGG | + | chr2_2:3282814-3282833 | None:intergenic | 45.0% |
| GACAGGCACACAAAAGTTGA+CGG | - | chr2_2:3282816-3282835 | Msa0231070:CDS | 45.0% | |
| GGATTTGTGGCCTAATTCTC+TGG | + | chr2_2:3282898-3282917 | None:intergenic | 45.0% | |
| GAATTAGGCCACAAATCCGA+TGG | - | chr2_2:3282900-3282919 | Msa0231070:CDS | 45.0% | |
| GAAATTGGCTGGGATTGTTC+CGG | + | chr2_2:3282985-3283004 | None:intergenic | 45.0% | |
| !! | TGAGCGTTGAGAAATTGGCT+GGG | + | chr2_2:3282995-3283014 | None:intergenic | 45.0% |
| !! | TTGAGCGTTGAGAAATTGGC+TGG | + | chr2_2:3282996-3283015 | None:intergenic | 45.0% |
| !! | GACGTTGAGCGTTGAGAAAT+TGG | + | chr2_2:3283000-3283019 | None:intergenic | 45.0% |
| TGAGGATGAAACCCTAACAG+AGG | + | chr2_2:3283143-3283162 | None:intergenic | 45.0% | |
| !! | TGTTGTTGGTGGTGTTGATG+AGG | + | chr2_2:3283161-3283180 | None:intergenic | 45.0% |
| ! | GTTGTTGCTGTTGCTGTTGT+TGG | + | chr2_2:3283175-3283194 | None:intergenic | 45.0% |
| CAAAATGAAAGTGGCGGTGA+TGG | - | chr2_2:3283293-3283312 | Msa0231070:CDS | 45.0% | |
| GGAGCTTCTTCTTCTTCTGT+AGG | - | chr2_2:3283407-3283426 | Msa0231070:CDS | 45.0% | |
| ATTTGGATGGTACCAGTGAG+TGG | - | chr2_2:3283512-3283531 | Msa0231070:CDS | 45.0% | |
| GAAGCTGGAACATTGAACCT+TGG | + | chr2_2:3283668-3283687 | None:intergenic | 45.0% | |
| AGGTTCAATGTTCCAGCTTC+TGG | - | chr2_2:3283668-3283687 | Msa0231070:CDS | 45.0% | |
| TTCAATGTTCCAGCTTCTGG+TGG | - | chr2_2:3283671-3283690 | Msa0231070:CDS | 45.0% | |
| ! | GGTGGTGGTGTTGAATTTCA+AGG | - | chr2_2:3283698-3283717 | Msa0231070:CDS | 45.0% |
| ! | GGTGGTGTTGAATTTCAAGG+TGG | - | chr2_2:3283701-3283720 | Msa0231070:CDS | 45.0% |
| GTTGAATTTCAAGGTGGACG+TGG | - | chr2_2:3283707-3283726 | Msa0231070:CDS | 45.0% | |
| TGGACGTGGTGGTTTACAAT+TGG | - | chr2_2:3283721-3283740 | Msa0231070:CDS | 45.0% | |
| GGACGTGGTGGTTTACAATT+GGG | - | chr2_2:3283722-3283741 | Msa0231070:CDS | 45.0% | |
| ! | ACCATCACAGCATTTGGGAT+TGG | - | chr2_2:3283757-3283776 | Msa0231070:CDS | 45.0% |
| GGCTGTATCTGATTCCAACT+TGG | - | chr2_2:3283778-3283797 | Msa0231070:CDS | 45.0% | |
| AGCAGCAAACATACCCAAGT+TGG | + | chr2_2:3283795-3283814 | None:intergenic | 45.0% | |
| ! | CCACTCTCATCATTAGGTTG+AGG | + | chr2_2:3283917-3283936 | None:intergenic | 45.0% |
| CCTCAACCTAATGATGAGAG+TGG | - | chr2_2:3283914-3283933 | Msa0231070:CDS | 45.0% | |
| !! | GATTCTTGTTGTTGGTGGTG+GGG | + | chr2_2:3282477-3282496 | None:intergenic | 45.0% |
| TTCTCATCATCAGCAGCTTG+TGG | - | chr2_2:3282512-3282531 | Msa0231070:CDS | 45.0% | |
| ! | TTGTGGTCCCTTTTGATGGA+AGG | - | chr2_2:3282529-3282548 | Msa0231070:CDS | 45.0% |
| GTGATGGCCTTCCATCAAAA+GGG | + | chr2_2:3282539-3282558 | None:intergenic | 45.0% | |
| GAGCCCATAATGAAAGGTGA+TGG | + | chr2_2:3282555-3282574 | None:intergenic | 45.0% | |
| GAGATGGAGCCCATAATGAA+AGG | + | chr2_2:3282561-3282580 | None:intergenic | 45.0% | |
| GAGGGAGAAGAGTTTGAAGA+AGG | + | chr2_2:3282594-3282613 | None:intergenic | 45.0% | |
| !! | GCATCAATGAGGTGTTGAGT+GGG | + | chr2_2:3282660-3282679 | None:intergenic | 45.0% |
| !! | AGCATCAATGAGGTGTTGAG+TGG | + | chr2_2:3282661-3282680 | None:intergenic | 45.0% |
| TTGGATACATCTGGAAGAGG+AGG | + | chr2_2:3282711-3282730 | None:intergenic | 45.0% | |
| !! | TTTTGGAGGATTTGCAACCG+CGG | + | chr2_2:3282784-3282803 | None:intergenic | 45.0% |
| ! | AACTTTTGTGTGCCTGTCCT+TGG | + | chr2_2:3282814-3282833 | None:intergenic | 45.0% |
| GACAGGCACACAAAAGTTGA+CGG | - | chr2_2:3282816-3282835 | Msa0231070:CDS | 45.0% | |
| GGATTTGTGGCCTAATTCTC+TGG | + | chr2_2:3282898-3282917 | None:intergenic | 45.0% | |
| GAATTAGGCCACAAATCCGA+TGG | - | chr2_2:3282900-3282919 | Msa0231070:CDS | 45.0% | |
| GAAATTGGCTGGGATTGTTC+CGG | + | chr2_2:3282985-3283004 | None:intergenic | 45.0% | |
| !! | TGAGCGTTGAGAAATTGGCT+GGG | + | chr2_2:3282995-3283014 | None:intergenic | 45.0% |
| !! | TTGAGCGTTGAGAAATTGGC+TGG | + | chr2_2:3282996-3283015 | None:intergenic | 45.0% |
| !! | GACGTTGAGCGTTGAGAAAT+TGG | + | chr2_2:3283000-3283019 | None:intergenic | 45.0% |
| TGAGGATGAAACCCTAACAG+AGG | + | chr2_2:3283143-3283162 | None:intergenic | 45.0% | |
| !! | TGTTGTTGGTGGTGTTGATG+AGG | + | chr2_2:3283161-3283180 | None:intergenic | 45.0% |
| ! | GTTGTTGCTGTTGCTGTTGT+TGG | + | chr2_2:3283175-3283194 | None:intergenic | 45.0% |
| CAAAATGAAAGTGGCGGTGA+TGG | - | chr2_2:3283293-3283312 | Msa0231070:CDS | 45.0% | |
| GGAGCTTCTTCTTCTTCTGT+AGG | - | chr2_2:3283407-3283426 | Msa0231070:CDS | 45.0% | |
| ATTTGGATGGTACCAGTGAG+TGG | - | chr2_2:3283512-3283531 | Msa0231070:CDS | 45.0% | |
| GAAGCTGGAACATTGAACCT+TGG | + | chr2_2:3283668-3283687 | None:intergenic | 45.0% | |
| AGGTTCAATGTTCCAGCTTC+TGG | - | chr2_2:3283668-3283687 | Msa0231070:CDS | 45.0% | |
| TTCAATGTTCCAGCTTCTGG+TGG | - | chr2_2:3283671-3283690 | Msa0231070:CDS | 45.0% | |
| ! | GGTGGTGGTGTTGAATTTCA+AGG | - | chr2_2:3283698-3283717 | Msa0231070:CDS | 45.0% |
| ! | GGTGGTGTTGAATTTCAAGG+TGG | - | chr2_2:3283701-3283720 | Msa0231070:CDS | 45.0% |
| GTTGAATTTCAAGGTGGACG+TGG | - | chr2_2:3283707-3283726 | Msa0231070:CDS | 45.0% | |
| TGGACGTGGTGGTTTACAAT+TGG | - | chr2_2:3283721-3283740 | Msa0231070:CDS | 45.0% | |
| GGACGTGGTGGTTTACAATT+GGG | - | chr2_2:3283722-3283741 | Msa0231070:CDS | 45.0% | |
| ! | ACCATCACAGCATTTGGGAT+TGG | - | chr2_2:3283757-3283776 | Msa0231070:CDS | 45.0% |
| GGCTGTATCTGATTCCAACT+TGG | - | chr2_2:3283778-3283797 | Msa0231070:CDS | 45.0% | |
| AGCAGCAAACATACCCAAGT+TGG | + | chr2_2:3283795-3283814 | None:intergenic | 45.0% | |
| ! | CCACTCTCATCATTAGGTTG+AGG | + | chr2_2:3283917-3283936 | None:intergenic | 45.0% |
| CCTCAACCTAATGATGAGAG+TGG | - | chr2_2:3283914-3283933 | Msa0231070:CDS | 45.0% | |
| GGGATGGGGATGAATATTGG+TGG | + | chr2_2:3282457-3282476 | None:intergenic | 50.0% | |
| GTGGGGATGGGGATGAATAT+TGG | + | chr2_2:3282460-3282479 | None:intergenic | 50.0% | |
| !! | TTGTTGTTGGTGGTGGGGAT+GGG | + | chr2_2:3282472-3282491 | None:intergenic | 50.0% |
| ! | CAGCTTGTGGTCCCTTTTGA+TGG | - | chr2_2:3282525-3282544 | Msa0231070:CDS | 50.0% |
| ! | GGTGATGGCCTTCCATCAAA+AGG | + | chr2_2:3282540-3282559 | None:intergenic | 50.0% |
| ACACCTCATTGATGCTTCCC+TGG | - | chr2_2:3282665-3282684 | Msa0231070:CDS | 50.0% | |
| !! | TTGCCAGGGAAGCATCAATG+AGG | + | chr2_2:3282671-3282690 | None:intergenic | 50.0% |
| AGATCTGGTGGCAATTGCCA+GGG | + | chr2_2:3282685-3282704 | None:intergenic | 50.0% | |
| AAGAGGAGGTTCAGATCTGG+TGG | + | chr2_2:3282697-3282716 | None:intergenic | 50.0% | |
| TGGAAGAGGAGGTTCAGATC+TGG | + | chr2_2:3282700-3282719 | None:intergenic | 50.0% | |
| TCCTCCAAAACGATCCACCA+AGG | - | chr2_2:3282794-3282813 | Msa0231070:CDS | 50.0% | |
| !! | TCCTTGGTGGATCGTTTTGG+AGG | + | chr2_2:3282798-3282817 | None:intergenic | 50.0% |
| !! | CTGTCCTTGGTGGATCGTTT+TGG | + | chr2_2:3282801-3282820 | None:intergenic | 50.0% |
| CAAAACGATCCACCAAGGAC+AGG | - | chr2_2:3282799-3282818 | Msa0231070:CDS | 50.0% | |
| ! | TTTTGTGTGCCTGTCCTTGG+TGG | + | chr2_2:3282811-3282830 | None:intergenic | 50.0% |
| GGCCTAATTCTCTGGTCAAC+TGG | + | chr2_2:3282890-3282909 | None:intergenic | 50.0% | |
| ! | CTGAGAGGAGCTGATTTCGA+CGG | + | chr2_2:3283059-3283078 | None:intergenic | 50.0% |
| AGCGCGCTATGAAAACTGAG+AGG | + | chr2_2:3283074-3283093 | None:intergenic | 50.0% | |
| ! | TTTTCATAGCGCGCTTGCAC+TGG | - | chr2_2:3283079-3283098 | Msa0231070:CDS | 50.0% |
| TGGTACGCAGCTTCTTCGTA+AGG | + | chr2_2:3283113-3283132 | None:intergenic | 50.0% | |
| ! | GTTGCTGTTGCTGTTGTTGG+TGG | + | chr2_2:3283172-3283191 | None:intergenic | 50.0% |
| CAACAGGATGATATGGGCGA+AGG | - | chr2_2:3283359-3283378 | Msa0231070:CDS | 50.0% | |
| GATGATATGGGCGAAGGTGA+CGG | - | chr2_2:3283365-3283384 | Msa0231070:CDS | 50.0% | |
| ! | CGGGGAGTGGAAGTACAATT+TGG | - | chr2_2:3283495-3283514 | Msa0231070:CDS | 50.0% |
| AATGTTCCAGCTTCTGGTGG+TGG | - | chr2_2:3283674-3283693 | Msa0231070:CDS | 50.0% | |
| GAATTTCAAGGTGGACGTGG+TGG | - | chr2_2:3283710-3283729 | Msa0231070:CDS | 50.0% | |
| GCCAATCCCAAATGCTGTGA+TGG | + | chr2_2:3283761-3283780 | None:intergenic | 50.0% | |
| GGGATGGGGATGAATATTGG+TGG | + | chr2_2:3282457-3282476 | None:intergenic | 50.0% | |
| GTGGGGATGGGGATGAATAT+TGG | + | chr2_2:3282460-3282479 | None:intergenic | 50.0% | |
| !! | TTGTTGTTGGTGGTGGGGAT+GGG | + | chr2_2:3282472-3282491 | None:intergenic | 50.0% |
| ! | CAGCTTGTGGTCCCTTTTGA+TGG | - | chr2_2:3282525-3282544 | Msa0231070:CDS | 50.0% |
| ! | GGTGATGGCCTTCCATCAAA+AGG | + | chr2_2:3282540-3282559 | None:intergenic | 50.0% |
| ACACCTCATTGATGCTTCCC+TGG | - | chr2_2:3282665-3282684 | Msa0231070:CDS | 50.0% | |
| !! | TTGCCAGGGAAGCATCAATG+AGG | + | chr2_2:3282671-3282690 | None:intergenic | 50.0% |
| AGATCTGGTGGCAATTGCCA+GGG | + | chr2_2:3282685-3282704 | None:intergenic | 50.0% | |
| AAGAGGAGGTTCAGATCTGG+TGG | + | chr2_2:3282697-3282716 | None:intergenic | 50.0% | |
| TGGAAGAGGAGGTTCAGATC+TGG | + | chr2_2:3282700-3282719 | None:intergenic | 50.0% | |
| TCCTCCAAAACGATCCACCA+AGG | - | chr2_2:3282794-3282813 | Msa0231070:CDS | 50.0% | |
| !! | TCCTTGGTGGATCGTTTTGG+AGG | + | chr2_2:3282798-3282817 | None:intergenic | 50.0% |
| !! | CTGTCCTTGGTGGATCGTTT+TGG | + | chr2_2:3282801-3282820 | None:intergenic | 50.0% |
| CAAAACGATCCACCAAGGAC+AGG | - | chr2_2:3282799-3282818 | Msa0231070:CDS | 50.0% | |
| ! | TTTTGTGTGCCTGTCCTTGG+TGG | + | chr2_2:3282811-3282830 | None:intergenic | 50.0% |
| GGCCTAATTCTCTGGTCAAC+TGG | + | chr2_2:3282890-3282909 | None:intergenic | 50.0% | |
| ! | CTGAGAGGAGCTGATTTCGA+CGG | + | chr2_2:3283059-3283078 | None:intergenic | 50.0% |
| AGCGCGCTATGAAAACTGAG+AGG | + | chr2_2:3283074-3283093 | None:intergenic | 50.0% | |
| ! | TTTTCATAGCGCGCTTGCAC+TGG | - | chr2_2:3283079-3283098 | Msa0231070:CDS | 50.0% |
| TGGTACGCAGCTTCTTCGTA+AGG | + | chr2_2:3283113-3283132 | None:intergenic | 50.0% | |
| ! | GTTGCTGTTGCTGTTGTTGG+TGG | + | chr2_2:3283172-3283191 | None:intergenic | 50.0% |
| CAACAGGATGATATGGGCGA+AGG | - | chr2_2:3283359-3283378 | Msa0231070:CDS | 50.0% | |
| GATGATATGGGCGAAGGTGA+CGG | - | chr2_2:3283365-3283384 | Msa0231070:CDS | 50.0% | |
| ! | CGGGGAGTGGAAGTACAATT+TGG | - | chr2_2:3283495-3283514 | Msa0231070:CDS | 50.0% |
| AATGTTCCAGCTTCTGGTGG+TGG | - | chr2_2:3283674-3283693 | Msa0231070:CDS | 50.0% | |
| GAATTTCAAGGTGGACGTGG+TGG | - | chr2_2:3283710-3283729 | Msa0231070:CDS | 50.0% | |
| GCCAATCCCAAATGCTGTGA+TGG | + | chr2_2:3283761-3283780 | None:intergenic | 50.0% | |
| !! | TGTTGTTGGTGGTGGGGATG+GGG | + | chr2_2:3282471-3282490 | None:intergenic | 55.0% |
| !! | CTTGTTGTTGGTGGTGGGGA+TGG | + | chr2_2:3282473-3282492 | None:intergenic | 55.0% |
| CAGATCTGGTGGCAATTGCC+AGG | + | chr2_2:3282686-3282705 | None:intergenic | 55.0% | |
| AGGATTTGCAACCGCGGTGA+CGG | + | chr2_2:3282778-3282797 | None:intergenic | 55.0% | |
| CACACAAAAGTTGACGGCCG+TGG | - | chr2_2:3282822-3282841 | Msa0231070:CDS | 55.0% | |
| GCATTCGAATTCTCCGGCCA+CGG | + | chr2_2:3282842-3282861 | None:intergenic | 55.0% | |
| TGGCCGGAGAATTCGAATGC+CGG | - | chr2_2:3282842-3282861 | Msa0231070:CDS | 55.0% | |
| TCGCCGGCATTCGAATTCTC+CGG | + | chr2_2:3282848-3282867 | None:intergenic | 55.0% | |
| ACTCTTGCTGCACATGTCGC+CGG | + | chr2_2:3282864-3282883 | None:intergenic | 55.0% | |
| GCTTCTTCAACAAGCGGAGC+CGG | - | chr2_2:3282938-3282957 | Msa0231070:CDS | 55.0% | |
| AACGTCTCACTCCGTAGCAG+CGG | - | chr2_2:3283014-3283033 | Msa0231070:CDS | 55.0% | |
| ACAGTGTAGAGCCGCTGCTA+CGG | + | chr2_2:3283028-3283047 | None:intergenic | 55.0% | |
| ! | AGAGGAGCTGATTTCGACGG+CGG | + | chr2_2:3283056-3283075 | None:intergenic | 55.0% |
| TACCAACACGCGCCTCTGTT+AGG | - | chr2_2:3283128-3283147 | Msa0231070:CDS | 55.0% | |
| ACCAACACGCGCCTCTGTTA+GGG | - | chr2_2:3283129-3283148 | Msa0231070:CDS | 55.0% | |
| ! | GAAAGTGGCGGTGATGGTGA+TGG | - | chr2_2:3283299-3283318 | Msa0231070:CDS | 55.0% |
| TGTTACCGGCAACAGCCATG+TGG | - | chr2_2:3283465-3283484 | Msa0231070:CDS | 55.0% | |
| GTTACCGGCAACAGCCATGT+GGG | - | chr2_2:3283466-3283485 | Msa0231070:CDS | 55.0% | |
| ! | AACAGCCATGTGGGCTACAG+CGG | - | chr2_2:3283475-3283494 | Msa0231070:CDS | 55.0% |
| TGGATGGTACCAGTGAGTGG+TGG | - | chr2_2:3283515-3283534 | Msa0231070:CDS | 55.0% | |
| !! | TGTTGTTGGTGGTGGGGATG+GGG | + | chr2_2:3282471-3282490 | None:intergenic | 55.0% |
| !! | CTTGTTGTTGGTGGTGGGGA+TGG | + | chr2_2:3282473-3282492 | None:intergenic | 55.0% |
| CAGATCTGGTGGCAATTGCC+AGG | + | chr2_2:3282686-3282705 | None:intergenic | 55.0% | |
| AGGATTTGCAACCGCGGTGA+CGG | + | chr2_2:3282778-3282797 | None:intergenic | 55.0% | |
| CACACAAAAGTTGACGGCCG+TGG | - | chr2_2:3282822-3282841 | Msa0231070:CDS | 55.0% | |
| GCATTCGAATTCTCCGGCCA+CGG | + | chr2_2:3282842-3282861 | None:intergenic | 55.0% | |
| TGGCCGGAGAATTCGAATGC+CGG | - | chr2_2:3282842-3282861 | Msa0231070:CDS | 55.0% | |
| TCGCCGGCATTCGAATTCTC+CGG | + | chr2_2:3282848-3282867 | None:intergenic | 55.0% | |
| ACTCTTGCTGCACATGTCGC+CGG | + | chr2_2:3282864-3282883 | None:intergenic | 55.0% | |
| GCTTCTTCAACAAGCGGAGC+CGG | - | chr2_2:3282938-3282957 | Msa0231070:CDS | 55.0% | |
| AACGTCTCACTCCGTAGCAG+CGG | - | chr2_2:3283014-3283033 | Msa0231070:CDS | 55.0% | |
| ACAGTGTAGAGCCGCTGCTA+CGG | + | chr2_2:3283028-3283047 | None:intergenic | 55.0% | |
| ! | AGAGGAGCTGATTTCGACGG+CGG | + | chr2_2:3283056-3283075 | None:intergenic | 55.0% |
| TACCAACACGCGCCTCTGTT+AGG | - | chr2_2:3283128-3283147 | Msa0231070:CDS | 55.0% | |
| ACCAACACGCGCCTCTGTTA+GGG | - | chr2_2:3283129-3283148 | Msa0231070:CDS | 55.0% | |
| ! | GAAAGTGGCGGTGATGGTGA+TGG | - | chr2_2:3283299-3283318 | Msa0231070:CDS | 55.0% |
| TGTTACCGGCAACAGCCATG+TGG | - | chr2_2:3283465-3283484 | Msa0231070:CDS | 55.0% | |
| GTTACCGGCAACAGCCATGT+GGG | - | chr2_2:3283466-3283485 | Msa0231070:CDS | 55.0% | |
| ! | AACAGCCATGTGGGCTACAG+CGG | - | chr2_2:3283475-3283494 | Msa0231070:CDS | 55.0% |
| TGGATGGTACCAGTGAGTGG+TGG | - | chr2_2:3283515-3283534 | Msa0231070:CDS | 55.0% | |
| AACTTCAACCGCCGTCACCG+CGG | - | chr2_2:3282764-3282783 | Msa0231070:CDS | 60.0% | |
| ! | ATTTGCAACCGCGGTGACGG+CGG | + | chr2_2:3282775-3282794 | None:intergenic | 60.0% |
| CAAAAGTTGACGGCCGTGGC+CGG | - | chr2_2:3282826-3282845 | Msa0231070:CDS | 60.0% | |
| ! | ACCCTAACAGAGGCGCGTGT+TGG | + | chr2_2:3283133-3283152 | None:intergenic | 60.0% |
| ! | GATATGGGCGAAGGTGACGG+TGG | - | chr2_2:3283368-3283387 | Msa0231070:CDS | 60.0% |
| GTAGCCCACATGGCTGTTGC+CGG | + | chr2_2:3283473-3283492 | None:intergenic | 60.0% | |
| ! | ACAGCCATGTGGGCTACAGC+GGG | - | chr2_2:3283476-3283495 | Msa0231070:CDS | 60.0% |
| GTTGCAGCACCACCACTCAC+TGG | + | chr2_2:3283527-3283546 | None:intergenic | 60.0% | |
| !! | GTTCCAGCTTCTGGTGGTGG+TGG | - | chr2_2:3283677-3283696 | Msa0231070:CDS | 60.0% |
| AACTTCAACCGCCGTCACCG+CGG | - | chr2_2:3282764-3282783 | Msa0231070:CDS | 60.0% | |
| ! | ATTTGCAACCGCGGTGACGG+CGG | + | chr2_2:3282775-3282794 | None:intergenic | 60.0% |
| CAAAAGTTGACGGCCGTGGC+CGG | - | chr2_2:3282826-3282845 | Msa0231070:CDS | 60.0% | |
| ! | ACCCTAACAGAGGCGCGTGT+TGG | + | chr2_2:3283133-3283152 | None:intergenic | 60.0% |
| ! | GATATGGGCGAAGGTGACGG+TGG | - | chr2_2:3283368-3283387 | Msa0231070:CDS | 60.0% |
| GTAGCCCACATGGCTGTTGC+CGG | + | chr2_2:3283473-3283492 | None:intergenic | 60.0% | |
| ! | ACAGCCATGTGGGCTACAGC+GGG | - | chr2_2:3283476-3283495 | Msa0231070:CDS | 60.0% |
| GTTGCAGCACCACCACTCAC+TGG | + | chr2_2:3283527-3283546 | None:intergenic | 60.0% | |
| !! | GTTCCAGCTTCTGGTGGTGG+TGG | - | chr2_2:3283677-3283696 | Msa0231070:CDS | 60.0% |
| ATCATCGCTGCCACCGGCAC+CGG | - | chr2_2:3282963-3282982 | Msa0231070:CDS | 65.0% | |
| ! | TGGGATTGTTCCGGTGCCGG+TGG | + | chr2_2:3282976-3282995 | None:intergenic | 65.0% |
| GGCTGGGATTGTTCCGGTGC+CGG | + | chr2_2:3282979-3282998 | None:intergenic | 65.0% | |
| ! | ATGGGCGAAGGTGACGGTGG+TGG | - | chr2_2:3283371-3283390 | Msa0231070:CDS | 65.0% |
| !! | GAAGGTGACGGTGGTGGAGG+AGG | - | chr2_2:3283377-3283396 | Msa0231070:CDS | 65.0% |
| ! | CAGCCATGTGGGCTACAGCG+GGG | - | chr2_2:3283477-3283496 | Msa0231070:CDS | 65.0% |
| ACTCCCCGCTGTAGCCCACA+TGG | + | chr2_2:3283483-3283502 | None:intergenic | 65.0% | |
| ! | ATGTGGGCTACAGCGGGGAG+TGG | - | chr2_2:3283482-3283501 | Msa0231070:CDS | 65.0% |
| CCACCACCACCACCAGAAGC+TGG | + | chr2_2:3283683-3283702 | None:intergenic | 65.0% | |
| !! | CCAGCTTCTGGTGGTGGTGG+TGG | - | chr2_2:3283680-3283699 | Msa0231070:CDS | 65.0% |
| !! | GCTTCTGGTGGTGGTGGTGG+TGG | - | chr2_2:3283683-3283702 | Msa0231070:CDS | 65.0% |
| ATCATCGCTGCCACCGGCAC+CGG | - | chr2_2:3282963-3282982 | Msa0231070:CDS | 65.0% | |
| ! | TGGGATTGTTCCGGTGCCGG+TGG | + | chr2_2:3282976-3282995 | None:intergenic | 65.0% |
| GGCTGGGATTGTTCCGGTGC+CGG | + | chr2_2:3282979-3282998 | None:intergenic | 65.0% | |
| ! | ATGGGCGAAGGTGACGGTGG+TGG | - | chr2_2:3283371-3283390 | Msa0231070:CDS | 65.0% |
| !! | GAAGGTGACGGTGGTGGAGG+AGG | - | chr2_2:3283377-3283396 | Msa0231070:CDS | 65.0% |
| ! | CAGCCATGTGGGCTACAGCG+GGG | - | chr2_2:3283477-3283496 | Msa0231070:CDS | 65.0% |
| ACTCCCCGCTGTAGCCCACA+TGG | + | chr2_2:3283483-3283502 | None:intergenic | 65.0% | |
| ! | ATGTGGGCTACAGCGGGGAG+TGG | - | chr2_2:3283482-3283501 | Msa0231070:CDS | 65.0% |
| CCACCACCACCACCAGAAGC+TGG | + | chr2_2:3283683-3283702 | None:intergenic | 65.0% | |
| !! | CCAGCTTCTGGTGGTGGTGG+TGG | - | chr2_2:3283680-3283699 | Msa0231070:CDS | 65.0% |
| !! | GCTTCTGGTGGTGGTGGTGG+TGG | - | chr2_2:3283683-3283702 | Msa0231070:CDS | 65.0% |
| CCGGTGGCAGCGATGATCGC+CGG | + | chr2_2:3282960-3282979 | None:intergenic | 70.0% | |
| CCGGCGATCATCGCTGCCAC+CGG | - | chr2_2:3282957-3282976 | Msa0231070:CDS | 70.0% | |
| ! | GGCGAAGGTGACGGTGGTGG+AGG | - | chr2_2:3283374-3283393 | Msa0231070:CDS | 70.0% |
| !! | GGTGACGGTGGTGGAGGAGG+TGG | - | chr2_2:3283380-3283399 | Msa0231070:CDS | 70.0% |
| !! | GACGGTGGTGGAGGAGGTGG+TGG | - | chr2_2:3283383-3283402 | Msa0231070:CDS | 70.0% |
| !! | GGTGGTGGAGGAGGTGGTGG+TGG | - | chr2_2:3283386-3283405 | Msa0231070:CDS | 70.0% |
| CCGGTGGCAGCGATGATCGC+CGG | + | chr2_2:3282960-3282979 | None:intergenic | 70.0% | |
| CCGGCGATCATCGCTGCCAC+CGG | - | chr2_2:3282957-3282976 | Msa0231070:CDS | 70.0% | |
| ! | GGCGAAGGTGACGGTGGTGG+AGG | - | chr2_2:3283374-3283393 | Msa0231070:CDS | 70.0% |
| !! | GGTGACGGTGGTGGAGGAGG+TGG | - | chr2_2:3283380-3283399 | Msa0231070:CDS | 70.0% |
| !! | GACGGTGGTGGAGGAGGTGG+TGG | - | chr2_2:3283383-3283402 | Msa0231070:CDS | 70.0% |
| !! | GGTGGTGGAGGAGGTGGTGG+TGG | - | chr2_2:3283386-3283405 | Msa0231070:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 3282411 | 3283964 | 3282411 | ID=Msa0231070;Name=Msa0231070 |
| chr2_2 | mRNA | 3282411 | 3283964 | 3282411 | ID=Msa0231070-mRNA-1;Parent=Msa0231070;Name=Msa0231070-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|517 |
| chr2_2 | exon | 3282411 | 3283964 | 3282411 | ID=Msa0231070-mRNA-1:exon:1226;Parent=Msa0231070-mRNA-1 |
| chr2_2 | CDS | 3282411 | 3283964 | 3282411 | ID=Msa0231070-mRNA-1:cds;Parent=Msa0231070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
