Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270590 | XP_003592963.1 | 91.363 | 521 | 11 | 10 | 1 | 521 | 1 | 487 | 0.0 | 916 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270590 | sp|Q9C518|TCP8_ARATH | 44.563 | 469 | 156 | 18 | 77 | 521 | 13 | 401 | 8.61e-80 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0270590 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044510 | Msa0270590 | 0.807120 | 5.901702e-50 | -8.615850e-47 |
| Msa0183330 | Msa0270590 | 0.834402 | 3.061024e-56 | -8.615850e-47 |
| Msa0188330 | Msa0270590 | 0.887284 | 1.633926e-72 | -8.615850e-47 |
| Msa0231070 | Msa0270590 | 0.849044 | 4.162379e-60 | -8.615850e-47 |
| Msa0270590 | Msa0308950 | 0.842000 | 3.377571e-58 | -8.615850e-47 |
| Msa0270590 | Msa1366370 | 0.807846 | 4.140570e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270590 | MtrunA17_Chr2g0277361 | 93.763 | 465 | 8 | 9 | 1 | 465 | 1 | 444 | 0.0 | 844 |
| Msa0270590 | MtrunA17_Chr5g0416581 | 92.045 | 88 | 6 | 1 | 131 | 217 | 61 | 148 | 1.73e-49 | 174 |
| Msa0270590 | MtrunA17_Chr4g0060601 | 65.909 | 132 | 33 | 4 | 77 | 205 | 44 | 166 | 7.68e-44 | 160 |
| Msa0270590 | MtrunA17_Chr7g0224581 | 53.289 | 152 | 61 | 3 | 108 | 255 | 21 | 166 | 2.35e-39 | 144 |
| Msa0270590 | MtrunA17_Chr1g0211941 | 80.488 | 82 | 13 | 1 | 127 | 208 | 27 | 105 | 4.87e-38 | 140 |
| Msa0270590 | MtrunA17_Chr1g0204001 | 56.303 | 119 | 48 | 1 | 106 | 224 | 38 | 152 | 1.08e-36 | 139 |
| Msa0270590 | MtrunA17_Chr1g0164881 | 75.000 | 84 | 18 | 1 | 121 | 204 | 20 | 100 | 1.16e-35 | 133 |
| Msa0270590 | MtrunA17_Chr8g0350941 | 78.947 | 76 | 16 | 0 | 133 | 208 | 77 | 152 | 2.18e-35 | 135 |
| Msa0270590 | MtrunA17_Chr1g0180911 | 80.282 | 71 | 14 | 0 | 128 | 198 | 41 | 111 | 8.81e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270590 | AT1G58100.1 | 44.563 | 469 | 156 | 18 | 77 | 521 | 13 | 401 | 8.75e-81 | 258 |
| Msa0270590 | AT1G35560.1 | 42.899 | 338 | 94 | 10 | 133 | 464 | 52 | 296 | 3.36e-59 | 199 |
| Msa0270590 | AT1G58100.2 | 39.872 | 469 | 154 | 20 | 77 | 521 | 13 | 377 | 3.67e-57 | 195 |
| Msa0270590 | AT1G72010.1 | 40.268 | 298 | 105 | 9 | 125 | 399 | 52 | 299 | 7.24e-48 | 170 |
| Msa0270590 | AT1G69690.1 | 58.710 | 155 | 41 | 4 | 131 | 275 | 46 | 187 | 1.70e-41 | 152 |
| Msa0270590 | AT3G47620.1 | 82.353 | 85 | 13 | 1 | 123 | 205 | 102 | 186 | 2.16e-40 | 152 |
| Msa0270590 | AT5G23280.1 | 77.108 | 83 | 16 | 1 | 126 | 208 | 32 | 111 | 5.22e-37 | 137 |
| Msa0270590 | AT2G45680.1 | 57.600 | 125 | 41 | 3 | 90 | 213 | 39 | 152 | 5.14e-36 | 137 |
| Msa0270590 | AT5G08330.1 | 68.750 | 96 | 27 | 1 | 111 | 206 | 9 | 101 | 1.01e-35 | 134 |
| Msa0270590 | AT3G27010.2 | 53.600 | 125 | 42 | 2 | 73 | 197 | 31 | 139 | 7.96e-35 | 133 |
| Msa0270590 | AT3G27010.1 | 53.600 | 125 | 42 | 2 | 73 | 197 | 31 | 139 | 7.96e-35 | 133 |
| Msa0270590 | AT5G51910.1 | 78.205 | 78 | 16 | 1 | 132 | 208 | 52 | 129 | 9.03e-34 | 130 |
| Msa0270590 | AT5G51910.2 | 78.205 | 78 | 16 | 1 | 132 | 208 | 52 | 129 | 9.03e-34 | 130 |
| Msa0270590 | AT2G37000.1 | 80.000 | 60 | 12 | 0 | 136 | 195 | 43 | 102 | 3.66e-27 | 108 |
| Msa0270590 | AT5G41030.1 | 51.546 | 97 | 35 | 1 | 133 | 229 | 65 | 149 | 1.71e-26 | 108 |
| Msa0270590 | AT3G45150.1 | 61.905 | 63 | 24 | 0 | 133 | 195 | 14 | 76 | 1.33e-21 | 92.0 |
Find 150 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCCATCACCTTTCATTA+TGG | 0.235639 | 2_3:-1812883 | Msa0270590:CDS |
| CTTGTTGTTGGTGGTGGGGA+TGG | 0.241546 | 2_3:+1812961 | None:intergenic |
| AGGTTCAATGTTCCAGCTTC+TGG | 0.242129 | 2_3:-1811757 | Msa0270590:CDS |
| GTTTGAAGAAGGTTGAATAT+TGG | 0.260266 | 2_3:+1812851 | None:intergenic |
| TTGAAGAAAATGGTTGAATT+TGG | 0.273936 | 2_3:+1812682 | None:intergenic |
| TCACCAACAACAGGATGATA+TGG | 0.275830 | 2_3:-1812073 | Msa0270590:CDS |
| TTGTTGTTGGTGGTGGGGAT+GGG | 0.292871 | 2_3:+1812962 | None:intergenic |
| TTCCAGTTGACCAGAGAATT+AGG | 0.308053 | 2_3:-1812540 | Msa0270590:CDS |
| GATAGTCATTGTGAGGTATT+AGG | 0.316778 | 2_3:+1811472 | None:intergenic |
| GACGGTGGTGGAGGAGGTGG+TGG | 0.325996 | 2_3:-1812042 | Msa0270590:CDS |
| AATTTGGTTGTTGTTGTTGT+TGG | 0.326907 | 2_3:+1812698 | None:intergenic |
| GACTGAACATGAGGTGTAAA+AGG | 0.331793 | 2_3:+1811835 | None:intergenic |
| ATGATTCTTGTTGTTGGTGG+TGG | 0.333014 | 2_3:+1812955 | None:intergenic |
| CGGGGAGTGGAAGTACAATT+TGG | 0.342926 | 2_3:-1811930 | Msa0270590:CDS |
| TACCAACACGCGCCTCTGTT+AGG | 0.343048 | 2_3:-1812297 | Msa0270590:CDS |
| TCTTCTCCACTCTCATCATT+AGG | 0.347346 | 2_3:+1811499 | None:intergenic |
| TGTTGTTGGTGGTGGGGATG+GGG | 0.348885 | 2_3:+1812963 | None:intergenic |
| CGCCCATATCATCCTGTTGT+TGG | 0.355044 | 2_3:+1812070 | None:intergenic |
| AGGCCATCACCTTTCATTAT+GGG | 0.359459 | 2_3:-1812882 | Msa0270590:CDS |
| GTGGGGATGGGGATGAATAT+TGG | 0.363141 | 2_3:+1812974 | None:intergenic |
| GTTGTTGCTGTTGTTGTTGT+TGG | 0.364428 | 2_3:+1812253 | None:intergenic |
| GAAGGTGACGGTGGTGGAGG+AGG | 0.367290 | 2_3:-1812048 | Msa0270590:CDS |
| GGCTGGGATTGTTCCGGTGC+CGG | 0.367521 | 2_3:+1812449 | None:intergenic |
| CTGTCCTTGGTGGATCGTTT+TGG | 0.369093 | 2_3:+1812627 | None:intergenic |
| TGGACGTGGTGGTTTACAAT+TGG | 0.382459 | 2_3:-1811704 | Msa0270590:CDS |
| TGATTCTTGTTGTTGGTGGT+GGG | 0.388715 | 2_3:+1812956 | None:intergenic |
| GTATCAACCATCACAGCATT+TGG | 0.390115 | 2_3:-1811674 | Msa0270590:CDS |
| GCGGTTGAAGTTGAAGAAAA+TGG | 0.393103 | 2_3:+1812672 | None:intergenic |
| GGCCTAATTCTCTGGTCAAC+TGG | 0.396838 | 2_3:+1812538 | None:intergenic |
| GTAGCCCACATGGCTGTTGC+CGG | 0.398412 | 2_3:+1811955 | None:intergenic |
| GGATTTGTGGCCTAATTCTC+TGG | 0.401966 | 2_3:+1812530 | None:intergenic |
| GATTCTTGTTGTTGGTGGTG+GGG | 0.404293 | 2_3:+1812957 | None:intergenic |
| GGTGGTGGAGGAGGTGGTGG+TGG | 0.404546 | 2_3:-1812039 | Msa0270590:CDS |
| GTGAGGATGATTCTTGTTGT+TGG | 0.411900 | 2_3:+1812949 | None:intergenic |
| TTGTTTCACCATCGGATTTG+TGG | 0.412133 | 2_3:+1812517 | None:intergenic |
| TCAACATCATTCAATGTCAT+TGG | 0.413791 | 2_3:-1811548 | Msa0270590:CDS |
| CCACTCTCATCATTAGGTTG+AGG | 0.418843 | 2_3:+1811505 | None:intergenic |
| GGTGACGGTGGTGGAGGAGG+TGG | 0.419720 | 2_3:-1812045 | Msa0270590:CDS |
| TATCAACCATCACAGCATTT+GGG | 0.420346 | 2_3:-1811673 | Msa0270590:CDS |
| GGACGTGGTGGTTTACAATT+GGG | 0.421245 | 2_3:-1811703 | Msa0270590:CDS |
| TTGTTGTTGTTGGATACATC+TGG | 0.423257 | 2_3:+1812708 | None:intergenic |
| GACGTTGAGCGTTGAGAAAT+TGG | 0.424642 | 2_3:+1812428 | None:intergenic |
| CCAGCTTCTGGTGGTGGTGG+TGG | 0.427315 | 2_3:-1811745 | Msa0270590:CDS |
| AAGAGTTGTTAACGTTGAAA+TGG | 0.427409 | 2_3:+1811587 | None:intergenic |
| GCTGTTGTTGTTGTTGGTGG+TGG | 0.434485 | 2_3:+1812259 | None:intergenic |
| GAGGGAGAAGAGTTTGAAGA+AGG | 0.435751 | 2_3:+1812840 | None:intergenic |
| GGTGGTGGTGTTGAATTTCA+AGG | 0.437658 | 2_3:-1811727 | Msa0270590:CDS |
| CAGATCTGGTGGCAATTGCC+AGG | 0.437859 | 2_3:+1812742 | None:intergenic |
| TCATCATTAGGTTGAGGTTG+AGG | 0.438959 | 2_3:+1811511 | None:intergenic |
| CTGATGAACGCTGATCAAAT+TGG | 0.440741 | 2_3:-1812228 | Msa0270590:CDS |
| GGGATGGGGATGAATATTGG+TGG | 0.440791 | 2_3:+1812977 | None:intergenic |
| GAAATTGGCTGGGATTGTTC+CGG | 0.446496 | 2_3:+1812443 | None:intergenic |
| GGCGAAGGTGACGGTGGTGG+AGG | 0.448389 | 2_3:-1812051 | Msa0270590:CDS |
| GGCTGTATCTGATTCCAACT+TGG | 0.449042 | 2_3:-1811647 | Msa0270590:CDS |
| ACAGCCATGTGGGCTACAGC+GGG | 0.455998 | 2_3:-1811949 | Msa0270590:CDS |
| ACCAACACGCGCCTCTGTTA+GGG | 0.456330 | 2_3:-1812296 | Msa0270590:CDS |
| GGAGCTTCTTCTTCTTCTGT+AGG | 0.458812 | 2_3:-1812018 | Msa0270590:CDS |
| GGTGATGGCCTTCCATCAAA+AGG | 0.462353 | 2_3:+1812894 | None:intergenic |
| AATGTTCCAGCTTCTGGTGG+TGG | 0.463360 | 2_3:-1811751 | Msa0270590:CDS |
| CAAAACAAATCACCAACAAC+AGG | 0.468328 | 2_3:-1812082 | Msa0270590:CDS |
| CTCAGTTACATTTCATGCCA+AGG | 0.474185 | 2_3:-1811777 | Msa0270590:CDS |
| CCATTCAATTGTTTCACCAT+CGG | 0.476071 | 2_3:+1812509 | None:intergenic |
| TTGAGCGTTGAGAAATTGGC+TGG | 0.476634 | 2_3:+1812432 | None:intergenic |
| ACACCTCATTGATGCTTCCC+TGG | 0.479655 | 2_3:-1812760 | Msa0270590:CDS |
| GCTTCTTCAACAAGCGGAGC+CGG | 0.481221 | 2_3:-1812487 | Msa0270590:CDS |
| TCGACCGTCAAATATGTTAC+CGG | 0.485929 | 2_3:-1811974 | Msa0270590:CDS |
| ATCATCGCTGCCACCGGCAC+CGG | 0.486326 | 2_3:-1812462 | Msa0270590:CDS |
| ATGGGCGAAGGTGACGGTGG+TGG | 0.487166 | 2_3:-1812054 | Msa0270590:CDS |
| GTTGCTGTTGTTGTTGTTGG+TGG | 0.491277 | 2_3:+1812256 | None:intergenic |
| AGGATGATTCTTGTTGTTGG+TGG | 0.493938 | 2_3:+1812952 | None:intergenic |
| ATGTGGGCTACAGCGGGGAG+TGG | 0.494234 | 2_3:-1811943 | Msa0270590:CDS |
| GCTGTATCTGATTCCAACTT+GGG | 0.503244 | 2_3:-1811646 | Msa0270590:CDS |
| AGGATTTGCAACCGCGGTGA+CGG | 0.503756 | 2_3:+1812650 | None:intergenic |
| ACGAGAATTACATGAGAAAA+CGG | 0.506668 | 2_3:-1812191 | Msa0270590:CDS |
| CTTAATGCTTATACAAGAGC+TGG | 0.507717 | 2_3:-1811610 | Msa0270590:CDS |
| CATGTTCAGTCTCAAAATCA+AGG | 0.508213 | 2_3:-1811823 | Msa0270590:CDS |
| AGCAGCAAACATACCCAAGT+TGG | 0.510675 | 2_3:+1811633 | None:intergenic |
| ACCATCACAGCATTTGGGAT+TGG | 0.511721 | 2_3:-1811668 | Msa0270590:CDS |
| GTTCCAGCTTCTGGTGGTGG+TGG | 0.513092 | 2_3:-1811748 | Msa0270590:CDS |
| CCGGCGATCATCGCTGCCAC+CGG | 0.513461 | 2_3:-1812468 | Msa0270590:CDS |
| CAAAAGTTGACGGCCGTGGC+CGG | 0.517328 | 2_3:-1812599 | Msa0270590:CDS |
| CCGGTGGCAGCGATGATCGC+CGG | 0.518014 | 2_3:+1812468 | None:intergenic |
| CAAAATGAAAGTGGCGGTGA+TGG | 0.520198 | 2_3:-1812132 | Msa0270590:CDS |
| TGGTACGCAGCTTCTTCGTA+AGG | 0.525067 | 2_3:+1812315 | None:intergenic |
| TTCAATGTTCCAGCTTCTGG+TGG | 0.527514 | 2_3:-1811754 | Msa0270590:CDS |
| CACCAACAACAGGATGATAT+GGG | 0.530307 | 2_3:-1812072 | Msa0270590:CDS |
| CCGATGGTGAAACAATTGAA+TGG | 0.532182 | 2_3:-1812509 | Msa0270590:CDS |
| GCATTCGAATTCTCCGGCCA+CGG | 0.535337 | 2_3:+1812586 | None:intergenic |
| TGCTGATGATGAGAATTTGA+AGG | 0.536098 | 2_3:+1812927 | None:intergenic |
| TCGCCGGCATTCGAATTCTC+CGG | 0.537835 | 2_3:+1812580 | None:intergenic |
| AACAACAATCAAAATGAAAG+TGG | 0.537872 | 2_3:-1812141 | Msa0270590:CDS |
| CACACAAAAGTTGACGGCCG+TGG | 0.538934 | 2_3:-1812603 | Msa0270590:CDS |
| TGGAAGAGGAGGTTCAGATC+TGG | 0.540562 | 2_3:+1812728 | None:intergenic |
| TGTTGTTGGTGGTGGTGATG+AGG | 0.542903 | 2_3:+1812267 | None:intergenic |
| ACAGTGTAGAGCCGCTGCTA+CGG | 0.544103 | 2_3:+1812400 | None:intergenic |
| AGAAGGTTGAATATTGGAGA+TGG | 0.548864 | 2_3:+1812857 | None:intergenic |
| GACAGGCACACAAAAGTTGA+CGG | 0.553080 | 2_3:-1812609 | Msa0270590:CDS |
| TTGTTGGATACATCTGGAAG+AGG | 0.554700 | 2_3:+1812714 | None:intergenic |
| ACTCCCCGCTGTAGCCCACA+TGG | 0.560090 | 2_3:+1811945 | None:intergenic |
| GTGATGGCCTTCCATCAAAA+GGG | 0.560570 | 2_3:+1812895 | None:intergenic |
| AACAGCCATGTGGGCTACAG+CGG | 0.560758 | 2_3:-1811950 | Msa0270590:CDS |
| GTTGCCGGTAACATATTTGA+CGG | 0.564703 | 2_3:+1811970 | None:intergenic |
| CAAAACGATCCACCAAGGAC+AGG | 0.572544 | 2_3:-1812626 | Msa0270590:CDS |
| GATGATATGGGCGAAGGTGA+CGG | 0.576236 | 2_3:-1812060 | Msa0270590:CDS |
| TGGGATTGTTCCGGTGCCGG+TGG | 0.577716 | 2_3:+1812452 | None:intergenic |
| ATTTGCAACCGCGGTGACGG+CGG | 0.577827 | 2_3:+1812653 | None:intergenic |
| GTTGAATTTCAAGGTGGACG+TGG | 0.582295 | 2_3:-1811718 | Msa0270590:CDS |
| ACTCTTGCTGCACATGTCGC+CGG | 0.582995 | 2_3:+1812564 | None:intergenic |
| ACCCTAACAGAGGCGCGTGT+TGG | 0.587028 | 2_3:+1812295 | None:intergenic |
| GTTGCAGCACCACCACTCAC+TGG | 0.588807 | 2_3:+1811901 | None:intergenic |
| TTCTCATCATCAGCAGCTTG+TGG | 0.593589 | 2_3:-1812919 | Msa0270590:CDS |
| TGGCCGGAGAATTCGAATGC+CGG | 0.599117 | 2_3:-1812583 | Msa0270590:CDS |
| GAGATGGAGCCCATAATGAA+AGG | 0.601517 | 2_3:+1812873 | None:intergenic |
| GAGCCCATAATGAAAGGTGA+TGG | 0.605278 | 2_3:+1812879 | None:intergenic |
| TTGGATACATCTGGAAGAGG+AGG | 0.605386 | 2_3:+1812717 | None:intergenic |
| TGAATGGCTTCTTCAACAAG+CGG | 0.607294 | 2_3:-1812493 | Msa0270590:CDS |
| ATGATGAGAATTTGAAGGTG+AGG | 0.608155 | 2_3:+1812932 | None:intergenic |
| GCCAATCCCAAATGCTGTGA+TGG | 0.613902 | 2_3:+1811667 | None:intergenic |
| GAAGCTGGAACATTGAACCT+TGG | 0.618817 | 2_3:+1811760 | None:intergenic |
| GGCATGAAATGTAACTGAGA+CGG | 0.621928 | 2_3:+1811781 | None:intergenic |
| GAGTGGAAGTACAATTTGGA+TGG | 0.623430 | 2_3:-1811926 | Msa0270590:CDS |
| CAAAACAACAAGCAGAAGAG+AGG | 0.623869 | 2_3:-1813002 | Msa0270590:CDS |
| GATATGGGCGAAGGTGACGG+TGG | 0.625298 | 2_3:-1812057 | Msa0270590:CDS |
| AGATCTGGTGGCAATTGCCA+GGG | 0.625421 | 2_3:+1812743 | None:intergenic |
| CCTCAACCTAATGATGAGAG+TGG | 0.625980 | 2_3:-1811505 | Msa0270590:CDS |
| CAACAGGATGATATGGGCGA+AGG | 0.628122 | 2_3:-1812066 | Msa0270590:CDS |
| AACTTCAACCGCCGTCACCG+CGG | 0.629301 | 2_3:-1812661 | Msa0270590:CDS |
| GAAAGTGGCGGTGATGGTGA+TGG | 0.632003 | 2_3:-1812126 | Msa0270590:CDS |
| AAGAGGAGGTTCAGATCTGG+TGG | 0.633145 | 2_3:+1812731 | None:intergenic |
| AACGTCTCACTCCGTAGCAG+CGG | 0.639266 | 2_3:-1812411 | Msa0270590:CDS |
| TGAGCGTTGAGAAATTGGCT+GGG | 0.640396 | 2_3:+1812433 | None:intergenic |
| GAATTAGGCCACAAATCCGA+TGG | 0.643115 | 2_3:-1812525 | Msa0270590:CDS |
| AGCATCAATGAGGTGTTGAG+TGG | 0.643841 | 2_3:+1812767 | None:intergenic |
| CTGAGAGGAGCTGATTTCGA+CGG | 0.644392 | 2_3:+1812369 | None:intergenic |
| AACAATCAAAATGAAAGTGG+CGG | 0.649002 | 2_3:-1812138 | Msa0270590:CDS |
| GCATCAATGAGGTGTTGAGT+GGG | 0.650961 | 2_3:+1812768 | None:intergenic |
| GTTACCGGCAACAGCCATGT+GGG | 0.654057 | 2_3:-1811959 | Msa0270590:CDS |
| TGTTACCGGCAACAGCCATG+TGG | 0.658913 | 2_3:-1811960 | Msa0270590:CDS |
| GGTAGTAGATAGTCATTGTG+AGG | 0.659915 | 2_3:+1811465 | None:intergenic |
| GAATTTCAAGGTGGACGTGG+TGG | 0.660159 | 2_3:-1811715 | Msa0270590:CDS |
| TCCTCCAAAACGATCCACCA+AGG | 0.665860 | 2_3:-1812631 | Msa0270590:CDS |
| CAGCCATGTGGGCTACAGCG+GGG | 0.667527 | 2_3:-1811948 | Msa0270590:CDS |
| AGAGGAGCTGATTTCGACGG+CGG | 0.670392 | 2_3:+1812372 | None:intergenic |
| AGACACAGACACAAAACATG+TGG | 0.683636 | 2_3:-1811858 | Msa0270590:CDS |
| TTGCCAGGGAAGCATCAATG+AGG | 0.690178 | 2_3:+1812757 | None:intergenic |
| ATTTGGATGGTACCAGTGAG+TGG | 0.695345 | 2_3:-1811913 | Msa0270590:CDS |
| TGGATGGTACCAGTGAGTGG+TGG | 0.715883 | 2_3:-1811910 | Msa0270590:CDS |
| AGCGCGCTATGAAAACTGAG+AGG | 0.721312 | 2_3:+1812354 | None:intergenic |
| TGAGGATGAAACCCTAACAG+AGG | 0.728996 | 2_3:+1812285 | None:intergenic |
| GGTGGTGTTGAATTTCAAGG+TGG | 0.744371 | 2_3:-1811724 | Msa0270590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTGTTTTGAAACTTTT+GGG | + | chr2_3:1812407-1812426 | None:intergenic | 20.0% |
| !!! | TGATTTGTTTTGAAACTTTT+GGG | + | chr2_3:1812407-1812426 | None:intergenic | 20.0% |
| ! | TTGAAGAAAATGGTTGAATT+TGG | + | chr2_3:1811818-1811837 | None:intergenic | 25.0% |
| ! | AACAACAATCAAAATGAAAG+TGG | - | chr2_3:1812356-1812375 | Msa0270590:CDS | 25.0% |
| !!! | GTGATTTGTTTTGAAACTTT+TGG | + | chr2_3:1812408-1812427 | None:intergenic | 25.0% |
| ! | TTGAAGAAAATGGTTGAATT+TGG | + | chr2_3:1811818-1811837 | None:intergenic | 25.0% |
| ! | AACAACAATCAAAATGAAAG+TGG | - | chr2_3:1812356-1812375 | Msa0270590:CDS | 25.0% |
| !!! | GTGATTTGTTTTGAAACTTT+TGG | + | chr2_3:1812408-1812427 | None:intergenic | 25.0% |
| GTTTGAAGAAGGTTGAATAT+TGG | + | chr2_3:1811649-1811668 | None:intergenic | 30.0% | |
| TGAAGAAGAAGAAGAAGAAT+TGG | + | chr2_3:1811682-1811701 | None:intergenic | 30.0% | |
| ! | AATTTGGTTGTTGTTGTTGT+TGG | + | chr2_3:1811802-1811821 | None:intergenic | 30.0% |
| ACGAGAATTACATGAGAAAA+CGG | - | chr2_3:1812306-1812325 | Msa0270590:CDS | 30.0% | |
| AACAATCAAAATGAAAGTGG+CGG | - | chr2_3:1812359-1812378 | Msa0270590:CDS | 30.0% | |
| ! | TCTGTAGGTAATTCTTTTTC+TGG | - | chr2_3:1812494-1812513 | Msa0270590:CDS | 30.0% |
| AAGAGTTGTTAACGTTGAAA+TGG | + | chr2_3:1812913-1812932 | None:intergenic | 30.0% | |
| TCAACATCATTCAATGTCAT+TGG | - | chr2_3:1812949-1812968 | Msa0270590:CDS | 30.0% | |
| GTTTGAAGAAGGTTGAATAT+TGG | + | chr2_3:1811649-1811668 | None:intergenic | 30.0% | |
| TGAAGAAGAAGAAGAAGAAT+TGG | + | chr2_3:1811682-1811701 | None:intergenic | 30.0% | |
| ! | AATTTGGTTGTTGTTGTTGT+TGG | + | chr2_3:1811802-1811821 | None:intergenic | 30.0% |
| ACGAGAATTACATGAGAAAA+CGG | - | chr2_3:1812306-1812325 | Msa0270590:CDS | 30.0% | |
| AACAATCAAAATGAAAGTGG+CGG | - | chr2_3:1812359-1812378 | Msa0270590:CDS | 30.0% | |
| ! | TCTGTAGGTAATTCTTTTTC+TGG | - | chr2_3:1812494-1812513 | Msa0270590:CDS | 30.0% |
| AAGAGTTGTTAACGTTGAAA+TGG | + | chr2_3:1812913-1812932 | None:intergenic | 30.0% | |
| TCAACATCATTCAATGTCAT+TGG | - | chr2_3:1812949-1812968 | Msa0270590:CDS | 30.0% | |
| ATGATGAGAATTTGAAGGTG+AGG | + | chr2_3:1811568-1811587 | None:intergenic | 35.0% | |
| ! | TGCTGATGATGAGAATTTGA+AGG | + | chr2_3:1811573-1811592 | None:intergenic | 35.0% |
| AGAAGGTTGAATATTGGAGA+TGG | + | chr2_3:1811643-1811662 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAATTGGA+GGG | + | chr2_3:1811678-1811697 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAATTGG+AGG | + | chr2_3:1811679-1811698 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTTGGATACATC+TGG | + | chr2_3:1811792-1811811 | None:intergenic | 35.0% |
| CCATTCAATTGTTTCACCAT+CGG | + | chr2_3:1811991-1812010 | None:intergenic | 35.0% | |
| CAAAACAAATCACCAACAAC+AGG | - | chr2_3:1812415-1812434 | Msa0270590:CDS | 35.0% | |
| !!! | TGATTTTGAGACTGAACATG+AGG | + | chr2_3:1812674-1812693 | None:intergenic | 35.0% |
| CATGTTCAGTCTCAAAATCA+AGG | - | chr2_3:1812674-1812693 | Msa0270590:CDS | 35.0% | |
| TATCAACCATCACAGCATTT+GGG | - | chr2_3:1812824-1812843 | Msa0270590:CDS | 35.0% | |
| CTTAATGCTTATACAAGAGC+TGG | - | chr2_3:1812887-1812906 | Msa0270590:CDS | 35.0% | |
| ATGATGAGAATTTGAAGGTG+AGG | + | chr2_3:1811568-1811587 | None:intergenic | 35.0% | |
| ! | TGCTGATGATGAGAATTTGA+AGG | + | chr2_3:1811573-1811592 | None:intergenic | 35.0% |
| AGAAGGTTGAATATTGGAGA+TGG | + | chr2_3:1811643-1811662 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAATTGGA+GGG | + | chr2_3:1811678-1811697 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAATTGG+AGG | + | chr2_3:1811679-1811698 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTTGGATACATC+TGG | + | chr2_3:1811792-1811811 | None:intergenic | 35.0% |
| CCATTCAATTGTTTCACCAT+CGG | + | chr2_3:1811991-1812010 | None:intergenic | 35.0% | |
| CAAAACAAATCACCAACAAC+AGG | - | chr2_3:1812415-1812434 | Msa0270590:CDS | 35.0% | |
| !!! | TGATTTTGAGACTGAACATG+AGG | + | chr2_3:1812674-1812693 | None:intergenic | 35.0% |
| CATGTTCAGTCTCAAAATCA+AGG | - | chr2_3:1812674-1812693 | Msa0270590:CDS | 35.0% | |
| TATCAACCATCACAGCATTT+GGG | - | chr2_3:1812824-1812843 | Msa0270590:CDS | 35.0% | |
| CTTAATGCTTATACAAGAGC+TGG | - | chr2_3:1812887-1812906 | Msa0270590:CDS | 35.0% | |
| CAAAACAACAAGCAGAAGAG+AGG | - | chr2_3:1811495-1811514 | Msa0270590:CDS | 40.0% | |
| !! | TGATTCTTGTTGTTGGTGGT+GGG | + | chr2_3:1811544-1811563 | None:intergenic | 40.0% |
| !! | ATGATTCTTGTTGTTGGTGG+TGG | + | chr2_3:1811545-1811564 | None:intergenic | 40.0% |
| !! | AGGATGATTCTTGTTGTTGG+TGG | + | chr2_3:1811548-1811567 | None:intergenic | 40.0% |
| ! | GTGAGGATGATTCTTGTTGT+TGG | + | chr2_3:1811551-1811570 | None:intergenic | 40.0% |
| AAGGCCATCACCTTTCATTA+TGG | - | chr2_3:1811614-1811633 | Msa0270590:CDS | 40.0% | |
| AGGCCATCACCTTTCATTAT+GGG | - | chr2_3:1811615-1811634 | Msa0270590:CDS | 40.0% | |
| TTGTTGGATACATCTGGAAG+AGG | + | chr2_3:1811786-1811805 | None:intergenic | 40.0% | |
| GCGGTTGAAGTTGAAGAAAA+TGG | + | chr2_3:1811828-1811847 | None:intergenic | 40.0% | |
| TTCCAGTTGACCAGAGAATT+AGG | - | chr2_3:1811957-1811976 | Msa0270590:CDS | 40.0% | |
| TTGTTTCACCATCGGATTTG+TGG | + | chr2_3:1811983-1812002 | None:intergenic | 40.0% | |
| CCGATGGTGAAACAATTGAA+TGG | - | chr2_3:1811988-1812007 | Msa0270590:CDS | 40.0% | |
| TGAATGGCTTCTTCAACAAG+CGG | - | chr2_3:1812004-1812023 | Msa0270590:CDS | 40.0% | |
| ! | GTTGTTGCTGTTGTTGTTGT+TGG | + | chr2_3:1812247-1812266 | None:intergenic | 40.0% |
| CTGATGAACGCTGATCAAAT+TGG | - | chr2_3:1812269-1812288 | Msa0270590:CDS | 40.0% | |
| TCACCAACAACAGGATGATA+TGG | - | chr2_3:1812424-1812443 | Msa0270590:CDS | 40.0% | |
| CACCAACAACAGGATGATAT+GGG | - | chr2_3:1812425-1812444 | Msa0270590:CDS | 40.0% | |
| TCGACCGTCAAATATGTTAC+CGG | - | chr2_3:1812523-1812542 | Msa0270590:CDS | 40.0% | |
| GTTGCCGGTAACATATTTGA+CGG | + | chr2_3:1812530-1812549 | None:intergenic | 40.0% | |
| ! | GAGTGGAAGTACAATTTGGA+TGG | - | chr2_3:1812571-1812590 | Msa0270590:CDS | 40.0% |
| AGACACAGACACAAAACATG+TGG | - | chr2_3:1812639-1812658 | Msa0270590:CDS | 40.0% | |
| GACTGAACATGAGGTGTAAA+AGG | + | chr2_3:1812665-1812684 | None:intergenic | 40.0% | |
| GGCATGAAATGTAACTGAGA+CGG | + | chr2_3:1812719-1812738 | None:intergenic | 40.0% | |
| CTCAGTTACATTTCATGCCA+AGG | - | chr2_3:1812720-1812739 | Msa0270590:CDS | 40.0% | |
| GTATCAACCATCACAGCATT+TGG | - | chr2_3:1812823-1812842 | Msa0270590:CDS | 40.0% | |
| GCTGTATCTGATTCCAACTT+GGG | - | chr2_3:1812851-1812870 | Msa0270590:CDS | 40.0% | |
| !! | TCATCATTAGGTTGAGGTTG+AGG | + | chr2_3:1812989-1813008 | None:intergenic | 40.0% |
| TCTTCTCCACTCTCATCATT+AGG | + | chr2_3:1813001-1813020 | None:intergenic | 40.0% | |
| CAAAACAACAAGCAGAAGAG+AGG | - | chr2_3:1811495-1811514 | Msa0270590:CDS | 40.0% | |
| !! | TGATTCTTGTTGTTGGTGGT+GGG | + | chr2_3:1811544-1811563 | None:intergenic | 40.0% |
| !! | ATGATTCTTGTTGTTGGTGG+TGG | + | chr2_3:1811545-1811564 | None:intergenic | 40.0% |
| !! | AGGATGATTCTTGTTGTTGG+TGG | + | chr2_3:1811548-1811567 | None:intergenic | 40.0% |
| ! | GTGAGGATGATTCTTGTTGT+TGG | + | chr2_3:1811551-1811570 | None:intergenic | 40.0% |
| AAGGCCATCACCTTTCATTA+TGG | - | chr2_3:1811614-1811633 | Msa0270590:CDS | 40.0% | |
| AGGCCATCACCTTTCATTAT+GGG | - | chr2_3:1811615-1811634 | Msa0270590:CDS | 40.0% | |
| TTGTTGGATACATCTGGAAG+AGG | + | chr2_3:1811786-1811805 | None:intergenic | 40.0% | |
| GCGGTTGAAGTTGAAGAAAA+TGG | + | chr2_3:1811828-1811847 | None:intergenic | 40.0% | |
| TTCCAGTTGACCAGAGAATT+AGG | - | chr2_3:1811957-1811976 | Msa0270590:CDS | 40.0% | |
| TTGTTTCACCATCGGATTTG+TGG | + | chr2_3:1811983-1812002 | None:intergenic | 40.0% | |
| CCGATGGTGAAACAATTGAA+TGG | - | chr2_3:1811988-1812007 | Msa0270590:CDS | 40.0% | |
| TGAATGGCTTCTTCAACAAG+CGG | - | chr2_3:1812004-1812023 | Msa0270590:CDS | 40.0% | |
| ! | GTTGTTGCTGTTGTTGTTGT+TGG | + | chr2_3:1812247-1812266 | None:intergenic | 40.0% |
| CTGATGAACGCTGATCAAAT+TGG | - | chr2_3:1812269-1812288 | Msa0270590:CDS | 40.0% | |
| TCACCAACAACAGGATGATA+TGG | - | chr2_3:1812424-1812443 | Msa0270590:CDS | 40.0% | |
| CACCAACAACAGGATGATAT+GGG | - | chr2_3:1812425-1812444 | Msa0270590:CDS | 40.0% | |
| TCGACCGTCAAATATGTTAC+CGG | - | chr2_3:1812523-1812542 | Msa0270590:CDS | 40.0% | |
| GTTGCCGGTAACATATTTGA+CGG | + | chr2_3:1812530-1812549 | None:intergenic | 40.0% | |
| ! | GAGTGGAAGTACAATTTGGA+TGG | - | chr2_3:1812571-1812590 | Msa0270590:CDS | 40.0% |
| AGACACAGACACAAAACATG+TGG | - | chr2_3:1812639-1812658 | Msa0270590:CDS | 40.0% | |
| GACTGAACATGAGGTGTAAA+AGG | + | chr2_3:1812665-1812684 | None:intergenic | 40.0% | |
| GGCATGAAATGTAACTGAGA+CGG | + | chr2_3:1812719-1812738 | None:intergenic | 40.0% | |
| CTCAGTTACATTTCATGCCA+AGG | - | chr2_3:1812720-1812739 | Msa0270590:CDS | 40.0% | |
| GTATCAACCATCACAGCATT+TGG | - | chr2_3:1812823-1812842 | Msa0270590:CDS | 40.0% | |
| GCTGTATCTGATTCCAACTT+GGG | - | chr2_3:1812851-1812870 | Msa0270590:CDS | 40.0% | |
| !! | TCATCATTAGGTTGAGGTTG+AGG | + | chr2_3:1812989-1813008 | None:intergenic | 40.0% |
| TCTTCTCCACTCTCATCATT+AGG | + | chr2_3:1813001-1813020 | None:intergenic | 40.0% | |
| !! | GATTCTTGTTGTTGGTGGTG+GGG | + | chr2_3:1811543-1811562 | None:intergenic | 45.0% |
| TTCTCATCATCAGCAGCTTG+TGG | - | chr2_3:1811578-1811597 | Msa0270590:CDS | 45.0% | |
| ! | TTGTGGTCCCTTTTGATGGA+AGG | - | chr2_3:1811595-1811614 | Msa0270590:CDS | 45.0% |
| GTGATGGCCTTCCATCAAAA+GGG | + | chr2_3:1811605-1811624 | None:intergenic | 45.0% | |
| GAGCCCATAATGAAAGGTGA+TGG | + | chr2_3:1811621-1811640 | None:intergenic | 45.0% | |
| GAGATGGAGCCCATAATGAA+AGG | + | chr2_3:1811627-1811646 | None:intergenic | 45.0% | |
| GAGGGAGAAGAGTTTGAAGA+AGG | + | chr2_3:1811660-1811679 | None:intergenic | 45.0% | |
| !! | GCATCAATGAGGTGTTGAGT+GGG | + | chr2_3:1811732-1811751 | None:intergenic | 45.0% |
| !! | AGCATCAATGAGGTGTTGAG+TGG | + | chr2_3:1811733-1811752 | None:intergenic | 45.0% |
| TTGGATACATCTGGAAGAGG+AGG | + | chr2_3:1811783-1811802 | None:intergenic | 45.0% | |
| !! | TTTTGGAGGATTTGCAACCG+CGG | + | chr2_3:1811856-1811875 | None:intergenic | 45.0% |
| ! | AACTTTTGTGTGCCTGTCCT+TGG | + | chr2_3:1811886-1811905 | None:intergenic | 45.0% |
| GACAGGCACACAAAAGTTGA+CGG | - | chr2_3:1811888-1811907 | Msa0270590:CDS | 45.0% | |
| GGATTTGTGGCCTAATTCTC+TGG | + | chr2_3:1811970-1811989 | None:intergenic | 45.0% | |
| GAATTAGGCCACAAATCCGA+TGG | - | chr2_3:1811972-1811991 | Msa0270590:CDS | 45.0% | |
| GAAATTGGCTGGGATTGTTC+CGG | + | chr2_3:1812057-1812076 | None:intergenic | 45.0% | |
| !! | TGAGCGTTGAGAAATTGGCT+GGG | + | chr2_3:1812067-1812086 | None:intergenic | 45.0% |
| !! | TTGAGCGTTGAGAAATTGGC+TGG | + | chr2_3:1812068-1812087 | None:intergenic | 45.0% |
| !! | GACGTTGAGCGTTGAGAAAT+TGG | + | chr2_3:1812072-1812091 | None:intergenic | 45.0% |
| TGAGGATGAAACCCTAACAG+AGG | + | chr2_3:1812215-1812234 | None:intergenic | 45.0% | |
| ! | GTTGCTGTTGTTGTTGTTGG+TGG | + | chr2_3:1812244-1812263 | None:intergenic | 45.0% |
| CAAAATGAAAGTGGCGGTGA+TGG | - | chr2_3:1812365-1812384 | Msa0270590:CDS | 45.0% | |
| GGAGCTTCTTCTTCTTCTGT+AGG | - | chr2_3:1812479-1812498 | Msa0270590:CDS | 45.0% | |
| ATTTGGATGGTACCAGTGAG+TGG | - | chr2_3:1812584-1812603 | Msa0270590:CDS | 45.0% | |
| GAAGCTGGAACATTGAACCT+TGG | + | chr2_3:1812740-1812759 | None:intergenic | 45.0% | |
| AGGTTCAATGTTCCAGCTTC+TGG | - | chr2_3:1812740-1812759 | Msa0270590:CDS | 45.0% | |
| TTCAATGTTCCAGCTTCTGG+TGG | - | chr2_3:1812743-1812762 | Msa0270590:CDS | 45.0% | |
| ! | GGTGGTGGTGTTGAATTTCA+AGG | - | chr2_3:1812770-1812789 | Msa0270590:CDS | 45.0% |
| ! | GGTGGTGTTGAATTTCAAGG+TGG | - | chr2_3:1812773-1812792 | Msa0270590:CDS | 45.0% |
| GTTGAATTTCAAGGTGGACG+TGG | - | chr2_3:1812779-1812798 | Msa0270590:CDS | 45.0% | |
| TGGACGTGGTGGTTTACAAT+TGG | - | chr2_3:1812793-1812812 | Msa0270590:CDS | 45.0% | |
| GGACGTGGTGGTTTACAATT+GGG | - | chr2_3:1812794-1812813 | Msa0270590:CDS | 45.0% | |
| ! | ACCATCACAGCATTTGGGAT+TGG | - | chr2_3:1812829-1812848 | Msa0270590:CDS | 45.0% |
| GGCTGTATCTGATTCCAACT+TGG | - | chr2_3:1812850-1812869 | Msa0270590:CDS | 45.0% | |
| AGCAGCAAACATACCCAAGT+TGG | + | chr2_3:1812867-1812886 | None:intergenic | 45.0% | |
| ! | CCACTCTCATCATTAGGTTG+AGG | + | chr2_3:1812995-1813014 | None:intergenic | 45.0% |
| CCTCAACCTAATGATGAGAG+TGG | - | chr2_3:1812992-1813011 | Msa0270590:CDS | 45.0% | |
| !! | GATTCTTGTTGTTGGTGGTG+GGG | + | chr2_3:1811543-1811562 | None:intergenic | 45.0% |
| TTCTCATCATCAGCAGCTTG+TGG | - | chr2_3:1811578-1811597 | Msa0270590:CDS | 45.0% | |
| ! | TTGTGGTCCCTTTTGATGGA+AGG | - | chr2_3:1811595-1811614 | Msa0270590:CDS | 45.0% |
| GTGATGGCCTTCCATCAAAA+GGG | + | chr2_3:1811605-1811624 | None:intergenic | 45.0% | |
| GAGCCCATAATGAAAGGTGA+TGG | + | chr2_3:1811621-1811640 | None:intergenic | 45.0% | |
| GAGATGGAGCCCATAATGAA+AGG | + | chr2_3:1811627-1811646 | None:intergenic | 45.0% | |
| GAGGGAGAAGAGTTTGAAGA+AGG | + | chr2_3:1811660-1811679 | None:intergenic | 45.0% | |
| !! | GCATCAATGAGGTGTTGAGT+GGG | + | chr2_3:1811732-1811751 | None:intergenic | 45.0% |
| !! | AGCATCAATGAGGTGTTGAG+TGG | + | chr2_3:1811733-1811752 | None:intergenic | 45.0% |
| TTGGATACATCTGGAAGAGG+AGG | + | chr2_3:1811783-1811802 | None:intergenic | 45.0% | |
| !! | TTTTGGAGGATTTGCAACCG+CGG | + | chr2_3:1811856-1811875 | None:intergenic | 45.0% |
| ! | AACTTTTGTGTGCCTGTCCT+TGG | + | chr2_3:1811886-1811905 | None:intergenic | 45.0% |
| GACAGGCACACAAAAGTTGA+CGG | - | chr2_3:1811888-1811907 | Msa0270590:CDS | 45.0% | |
| GGATTTGTGGCCTAATTCTC+TGG | + | chr2_3:1811970-1811989 | None:intergenic | 45.0% | |
| GAATTAGGCCACAAATCCGA+TGG | - | chr2_3:1811972-1811991 | Msa0270590:CDS | 45.0% | |
| GAAATTGGCTGGGATTGTTC+CGG | + | chr2_3:1812057-1812076 | None:intergenic | 45.0% | |
| !! | TGAGCGTTGAGAAATTGGCT+GGG | + | chr2_3:1812067-1812086 | None:intergenic | 45.0% |
| !! | TTGAGCGTTGAGAAATTGGC+TGG | + | chr2_3:1812068-1812087 | None:intergenic | 45.0% |
| !! | GACGTTGAGCGTTGAGAAAT+TGG | + | chr2_3:1812072-1812091 | None:intergenic | 45.0% |
| TGAGGATGAAACCCTAACAG+AGG | + | chr2_3:1812215-1812234 | None:intergenic | 45.0% | |
| ! | GTTGCTGTTGTTGTTGTTGG+TGG | + | chr2_3:1812244-1812263 | None:intergenic | 45.0% |
| CAAAATGAAAGTGGCGGTGA+TGG | - | chr2_3:1812365-1812384 | Msa0270590:CDS | 45.0% | |
| GGAGCTTCTTCTTCTTCTGT+AGG | - | chr2_3:1812479-1812498 | Msa0270590:CDS | 45.0% | |
| ATTTGGATGGTACCAGTGAG+TGG | - | chr2_3:1812584-1812603 | Msa0270590:CDS | 45.0% | |
| GAAGCTGGAACATTGAACCT+TGG | + | chr2_3:1812740-1812759 | None:intergenic | 45.0% | |
| AGGTTCAATGTTCCAGCTTC+TGG | - | chr2_3:1812740-1812759 | Msa0270590:CDS | 45.0% | |
| TTCAATGTTCCAGCTTCTGG+TGG | - | chr2_3:1812743-1812762 | Msa0270590:CDS | 45.0% | |
| ! | GGTGGTGGTGTTGAATTTCA+AGG | - | chr2_3:1812770-1812789 | Msa0270590:CDS | 45.0% |
| ! | GGTGGTGTTGAATTTCAAGG+TGG | - | chr2_3:1812773-1812792 | Msa0270590:CDS | 45.0% |
| GTTGAATTTCAAGGTGGACG+TGG | - | chr2_3:1812779-1812798 | Msa0270590:CDS | 45.0% | |
| TGGACGTGGTGGTTTACAAT+TGG | - | chr2_3:1812793-1812812 | Msa0270590:CDS | 45.0% | |
| GGACGTGGTGGTTTACAATT+GGG | - | chr2_3:1812794-1812813 | Msa0270590:CDS | 45.0% | |
| ! | ACCATCACAGCATTTGGGAT+TGG | - | chr2_3:1812829-1812848 | Msa0270590:CDS | 45.0% |
| GGCTGTATCTGATTCCAACT+TGG | - | chr2_3:1812850-1812869 | Msa0270590:CDS | 45.0% | |
| AGCAGCAAACATACCCAAGT+TGG | + | chr2_3:1812867-1812886 | None:intergenic | 45.0% | |
| ! | CCACTCTCATCATTAGGTTG+AGG | + | chr2_3:1812995-1813014 | None:intergenic | 45.0% |
| CCTCAACCTAATGATGAGAG+TGG | - | chr2_3:1812992-1813011 | Msa0270590:CDS | 45.0% | |
| GGGATGGGGATGAATATTGG+TGG | + | chr2_3:1811523-1811542 | None:intergenic | 50.0% | |
| GTGGGGATGGGGATGAATAT+TGG | + | chr2_3:1811526-1811545 | None:intergenic | 50.0% | |
| !! | TTGTTGTTGGTGGTGGGGAT+GGG | + | chr2_3:1811538-1811557 | None:intergenic | 50.0% |
| ! | CAGCTTGTGGTCCCTTTTGA+TGG | - | chr2_3:1811591-1811610 | Msa0270590:CDS | 50.0% |
| ! | GGTGATGGCCTTCCATCAAA+AGG | + | chr2_3:1811606-1811625 | None:intergenic | 50.0% |
| ACACCTCATTGATGCTTCCC+TGG | - | chr2_3:1811737-1811756 | Msa0270590:CDS | 50.0% | |
| !! | TTGCCAGGGAAGCATCAATG+AGG | + | chr2_3:1811743-1811762 | None:intergenic | 50.0% |
| AGATCTGGTGGCAATTGCCA+GGG | + | chr2_3:1811757-1811776 | None:intergenic | 50.0% | |
| AAGAGGAGGTTCAGATCTGG+TGG | + | chr2_3:1811769-1811788 | None:intergenic | 50.0% | |
| TGGAAGAGGAGGTTCAGATC+TGG | + | chr2_3:1811772-1811791 | None:intergenic | 50.0% | |
| TCCTCCAAAACGATCCACCA+AGG | - | chr2_3:1811866-1811885 | Msa0270590:CDS | 50.0% | |
| !! | TCCTTGGTGGATCGTTTTGG+AGG | + | chr2_3:1811870-1811889 | None:intergenic | 50.0% |
| !! | CTGTCCTTGGTGGATCGTTT+TGG | + | chr2_3:1811873-1811892 | None:intergenic | 50.0% |
| CAAAACGATCCACCAAGGAC+AGG | - | chr2_3:1811871-1811890 | Msa0270590:CDS | 50.0% | |
| ! | TTTTGTGTGCCTGTCCTTGG+TGG | + | chr2_3:1811883-1811902 | None:intergenic | 50.0% |
| GGCCTAATTCTCTGGTCAAC+TGG | + | chr2_3:1811962-1811981 | None:intergenic | 50.0% | |
| ! | CTGAGAGGAGCTGATTTCGA+CGG | + | chr2_3:1812131-1812150 | None:intergenic | 50.0% |
| AGCGCGCTATGAAAACTGAG+AGG | + | chr2_3:1812146-1812165 | None:intergenic | 50.0% | |
| ! | TTTTCATAGCGCGCTTGCAC+TGG | - | chr2_3:1812151-1812170 | Msa0270590:CDS | 50.0% |
| TGGTACGCAGCTTCTTCGTA+AGG | + | chr2_3:1812185-1812204 | None:intergenic | 50.0% | |
| !! | TGTTGTTGGTGGTGGTGATG+AGG | + | chr2_3:1812233-1812252 | None:intergenic | 50.0% |
| ! | GCTGTTGTTGTTGTTGGTGG+TGG | + | chr2_3:1812241-1812260 | None:intergenic | 50.0% |
| CGCCCATATCATCCTGTTGT+TGG | + | chr2_3:1812430-1812449 | None:intergenic | 50.0% | |
| CAACAGGATGATATGGGCGA+AGG | - | chr2_3:1812431-1812450 | Msa0270590:CDS | 50.0% | |
| GATGATATGGGCGAAGGTGA+CGG | - | chr2_3:1812437-1812456 | Msa0270590:CDS | 50.0% | |
| ! | CGGGGAGTGGAAGTACAATT+TGG | - | chr2_3:1812567-1812586 | Msa0270590:CDS | 50.0% |
| AATGTTCCAGCTTCTGGTGG+TGG | - | chr2_3:1812746-1812765 | Msa0270590:CDS | 50.0% | |
| GAATTTCAAGGTGGACGTGG+TGG | - | chr2_3:1812782-1812801 | Msa0270590:CDS | 50.0% | |
| GCCAATCCCAAATGCTGTGA+TGG | + | chr2_3:1812833-1812852 | None:intergenic | 50.0% | |
| GGGATGGGGATGAATATTGG+TGG | + | chr2_3:1811523-1811542 | None:intergenic | 50.0% | |
| GTGGGGATGGGGATGAATAT+TGG | + | chr2_3:1811526-1811545 | None:intergenic | 50.0% | |
| !! | TTGTTGTTGGTGGTGGGGAT+GGG | + | chr2_3:1811538-1811557 | None:intergenic | 50.0% |
| ! | CAGCTTGTGGTCCCTTTTGA+TGG | - | chr2_3:1811591-1811610 | Msa0270590:CDS | 50.0% |
| ! | GGTGATGGCCTTCCATCAAA+AGG | + | chr2_3:1811606-1811625 | None:intergenic | 50.0% |
| ACACCTCATTGATGCTTCCC+TGG | - | chr2_3:1811737-1811756 | Msa0270590:CDS | 50.0% | |
| !! | TTGCCAGGGAAGCATCAATG+AGG | + | chr2_3:1811743-1811762 | None:intergenic | 50.0% |
| AGATCTGGTGGCAATTGCCA+GGG | + | chr2_3:1811757-1811776 | None:intergenic | 50.0% | |
| AAGAGGAGGTTCAGATCTGG+TGG | + | chr2_3:1811769-1811788 | None:intergenic | 50.0% | |
| TGGAAGAGGAGGTTCAGATC+TGG | + | chr2_3:1811772-1811791 | None:intergenic | 50.0% | |
| TCCTCCAAAACGATCCACCA+AGG | - | chr2_3:1811866-1811885 | Msa0270590:CDS | 50.0% | |
| !! | TCCTTGGTGGATCGTTTTGG+AGG | + | chr2_3:1811870-1811889 | None:intergenic | 50.0% |
| !! | CTGTCCTTGGTGGATCGTTT+TGG | + | chr2_3:1811873-1811892 | None:intergenic | 50.0% |
| CAAAACGATCCACCAAGGAC+AGG | - | chr2_3:1811871-1811890 | Msa0270590:CDS | 50.0% | |
| ! | TTTTGTGTGCCTGTCCTTGG+TGG | + | chr2_3:1811883-1811902 | None:intergenic | 50.0% |
| GGCCTAATTCTCTGGTCAAC+TGG | + | chr2_3:1811962-1811981 | None:intergenic | 50.0% | |
| ! | CTGAGAGGAGCTGATTTCGA+CGG | + | chr2_3:1812131-1812150 | None:intergenic | 50.0% |
| AGCGCGCTATGAAAACTGAG+AGG | + | chr2_3:1812146-1812165 | None:intergenic | 50.0% | |
| ! | TTTTCATAGCGCGCTTGCAC+TGG | - | chr2_3:1812151-1812170 | Msa0270590:CDS | 50.0% |
| TGGTACGCAGCTTCTTCGTA+AGG | + | chr2_3:1812185-1812204 | None:intergenic | 50.0% | |
| !! | TGTTGTTGGTGGTGGTGATG+AGG | + | chr2_3:1812233-1812252 | None:intergenic | 50.0% |
| ! | GCTGTTGTTGTTGTTGGTGG+TGG | + | chr2_3:1812241-1812260 | None:intergenic | 50.0% |
| CGCCCATATCATCCTGTTGT+TGG | + | chr2_3:1812430-1812449 | None:intergenic | 50.0% | |
| CAACAGGATGATATGGGCGA+AGG | - | chr2_3:1812431-1812450 | Msa0270590:CDS | 50.0% | |
| GATGATATGGGCGAAGGTGA+CGG | - | chr2_3:1812437-1812456 | Msa0270590:CDS | 50.0% | |
| ! | CGGGGAGTGGAAGTACAATT+TGG | - | chr2_3:1812567-1812586 | Msa0270590:CDS | 50.0% |
| AATGTTCCAGCTTCTGGTGG+TGG | - | chr2_3:1812746-1812765 | Msa0270590:CDS | 50.0% | |
| GAATTTCAAGGTGGACGTGG+TGG | - | chr2_3:1812782-1812801 | Msa0270590:CDS | 50.0% | |
| GCCAATCCCAAATGCTGTGA+TGG | + | chr2_3:1812833-1812852 | None:intergenic | 50.0% | |
| !! | TGTTGTTGGTGGTGGGGATG+GGG | + | chr2_3:1811537-1811556 | None:intergenic | 55.0% |
| !! | CTTGTTGTTGGTGGTGGGGA+TGG | + | chr2_3:1811539-1811558 | None:intergenic | 55.0% |
| CAGATCTGGTGGCAATTGCC+AGG | + | chr2_3:1811758-1811777 | None:intergenic | 55.0% | |
| AGGATTTGCAACCGCGGTGA+CGG | + | chr2_3:1811850-1811869 | None:intergenic | 55.0% | |
| CACACAAAAGTTGACGGCCG+TGG | - | chr2_3:1811894-1811913 | Msa0270590:CDS | 55.0% | |
| GCATTCGAATTCTCCGGCCA+CGG | + | chr2_3:1811914-1811933 | None:intergenic | 55.0% | |
| TGGCCGGAGAATTCGAATGC+CGG | - | chr2_3:1811914-1811933 | Msa0270590:CDS | 55.0% | |
| TCGCCGGCATTCGAATTCTC+CGG | + | chr2_3:1811920-1811939 | None:intergenic | 55.0% | |
| ACTCTTGCTGCACATGTCGC+CGG | + | chr2_3:1811936-1811955 | None:intergenic | 55.0% | |
| GCTTCTTCAACAAGCGGAGC+CGG | - | chr2_3:1812010-1812029 | Msa0270590:CDS | 55.0% | |
| AACGTCTCACTCCGTAGCAG+CGG | - | chr2_3:1812086-1812105 | Msa0270590:CDS | 55.0% | |
| ACAGTGTAGAGCCGCTGCTA+CGG | + | chr2_3:1812100-1812119 | None:intergenic | 55.0% | |
| ! | AGAGGAGCTGATTTCGACGG+CGG | + | chr2_3:1812128-1812147 | None:intergenic | 55.0% |
| TACCAACACGCGCCTCTGTT+AGG | - | chr2_3:1812200-1812219 | Msa0270590:CDS | 55.0% | |
| ACCAACACGCGCCTCTGTTA+GGG | - | chr2_3:1812201-1812220 | Msa0270590:CDS | 55.0% | |
| ! | GAAAGTGGCGGTGATGGTGA+TGG | - | chr2_3:1812371-1812390 | Msa0270590:CDS | 55.0% |
| TGTTACCGGCAACAGCCATG+TGG | - | chr2_3:1812537-1812556 | Msa0270590:CDS | 55.0% | |
| GTTACCGGCAACAGCCATGT+GGG | - | chr2_3:1812538-1812557 | Msa0270590:CDS | 55.0% | |
| ! | AACAGCCATGTGGGCTACAG+CGG | - | chr2_3:1812547-1812566 | Msa0270590:CDS | 55.0% |
| TGGATGGTACCAGTGAGTGG+TGG | - | chr2_3:1812587-1812606 | Msa0270590:CDS | 55.0% | |
| !! | TGTTGTTGGTGGTGGGGATG+GGG | + | chr2_3:1811537-1811556 | None:intergenic | 55.0% |
| !! | CTTGTTGTTGGTGGTGGGGA+TGG | + | chr2_3:1811539-1811558 | None:intergenic | 55.0% |
| CAGATCTGGTGGCAATTGCC+AGG | + | chr2_3:1811758-1811777 | None:intergenic | 55.0% | |
| AGGATTTGCAACCGCGGTGA+CGG | + | chr2_3:1811850-1811869 | None:intergenic | 55.0% | |
| CACACAAAAGTTGACGGCCG+TGG | - | chr2_3:1811894-1811913 | Msa0270590:CDS | 55.0% | |
| GCATTCGAATTCTCCGGCCA+CGG | + | chr2_3:1811914-1811933 | None:intergenic | 55.0% | |
| TGGCCGGAGAATTCGAATGC+CGG | - | chr2_3:1811914-1811933 | Msa0270590:CDS | 55.0% | |
| TCGCCGGCATTCGAATTCTC+CGG | + | chr2_3:1811920-1811939 | None:intergenic | 55.0% | |
| ACTCTTGCTGCACATGTCGC+CGG | + | chr2_3:1811936-1811955 | None:intergenic | 55.0% | |
| GCTTCTTCAACAAGCGGAGC+CGG | - | chr2_3:1812010-1812029 | Msa0270590:CDS | 55.0% | |
| AACGTCTCACTCCGTAGCAG+CGG | - | chr2_3:1812086-1812105 | Msa0270590:CDS | 55.0% | |
| ACAGTGTAGAGCCGCTGCTA+CGG | + | chr2_3:1812100-1812119 | None:intergenic | 55.0% | |
| ! | AGAGGAGCTGATTTCGACGG+CGG | + | chr2_3:1812128-1812147 | None:intergenic | 55.0% |
| TACCAACACGCGCCTCTGTT+AGG | - | chr2_3:1812200-1812219 | Msa0270590:CDS | 55.0% | |
| ACCAACACGCGCCTCTGTTA+GGG | - | chr2_3:1812201-1812220 | Msa0270590:CDS | 55.0% | |
| ! | GAAAGTGGCGGTGATGGTGA+TGG | - | chr2_3:1812371-1812390 | Msa0270590:CDS | 55.0% |
| TGTTACCGGCAACAGCCATG+TGG | - | chr2_3:1812537-1812556 | Msa0270590:CDS | 55.0% | |
| GTTACCGGCAACAGCCATGT+GGG | - | chr2_3:1812538-1812557 | Msa0270590:CDS | 55.0% | |
| ! | AACAGCCATGTGGGCTACAG+CGG | - | chr2_3:1812547-1812566 | Msa0270590:CDS | 55.0% |
| TGGATGGTACCAGTGAGTGG+TGG | - | chr2_3:1812587-1812606 | Msa0270590:CDS | 55.0% | |
| AACTTCAACCGCCGTCACCG+CGG | - | chr2_3:1811836-1811855 | Msa0270590:CDS | 60.0% | |
| ! | ATTTGCAACCGCGGTGACGG+CGG | + | chr2_3:1811847-1811866 | None:intergenic | 60.0% |
| CAAAAGTTGACGGCCGTGGC+CGG | - | chr2_3:1811898-1811917 | Msa0270590:CDS | 60.0% | |
| ! | ACCCTAACAGAGGCGCGTGT+TGG | + | chr2_3:1812205-1812224 | None:intergenic | 60.0% |
| ! | GATATGGGCGAAGGTGACGG+TGG | - | chr2_3:1812440-1812459 | Msa0270590:CDS | 60.0% |
| GTAGCCCACATGGCTGTTGC+CGG | + | chr2_3:1812545-1812564 | None:intergenic | 60.0% | |
| ! | ACAGCCATGTGGGCTACAGC+GGG | - | chr2_3:1812548-1812567 | Msa0270590:CDS | 60.0% |
| GTTGCAGCACCACCACTCAC+TGG | + | chr2_3:1812599-1812618 | None:intergenic | 60.0% | |
| !! | GTTCCAGCTTCTGGTGGTGG+TGG | - | chr2_3:1812749-1812768 | Msa0270590:CDS | 60.0% |
| AACTTCAACCGCCGTCACCG+CGG | - | chr2_3:1811836-1811855 | Msa0270590:CDS | 60.0% | |
| ! | ATTTGCAACCGCGGTGACGG+CGG | + | chr2_3:1811847-1811866 | None:intergenic | 60.0% |
| CAAAAGTTGACGGCCGTGGC+CGG | - | chr2_3:1811898-1811917 | Msa0270590:CDS | 60.0% | |
| ! | ACCCTAACAGAGGCGCGTGT+TGG | + | chr2_3:1812205-1812224 | None:intergenic | 60.0% |
| ! | GATATGGGCGAAGGTGACGG+TGG | - | chr2_3:1812440-1812459 | Msa0270590:CDS | 60.0% |
| GTAGCCCACATGGCTGTTGC+CGG | + | chr2_3:1812545-1812564 | None:intergenic | 60.0% | |
| ! | ACAGCCATGTGGGCTACAGC+GGG | - | chr2_3:1812548-1812567 | Msa0270590:CDS | 60.0% |
| GTTGCAGCACCACCACTCAC+TGG | + | chr2_3:1812599-1812618 | None:intergenic | 60.0% | |
| !! | GTTCCAGCTTCTGGTGGTGG+TGG | - | chr2_3:1812749-1812768 | Msa0270590:CDS | 60.0% |
| ATCATCGCTGCCACCGGCAC+CGG | - | chr2_3:1812035-1812054 | Msa0270590:CDS | 65.0% | |
| ! | TGGGATTGTTCCGGTGCCGG+TGG | + | chr2_3:1812048-1812067 | None:intergenic | 65.0% |
| GGCTGGGATTGTTCCGGTGC+CGG | + | chr2_3:1812051-1812070 | None:intergenic | 65.0% | |
| ! | ATGGGCGAAGGTGACGGTGG+TGG | - | chr2_3:1812443-1812462 | Msa0270590:CDS | 65.0% |
| !! | GAAGGTGACGGTGGTGGAGG+AGG | - | chr2_3:1812449-1812468 | Msa0270590:CDS | 65.0% |
| ! | CAGCCATGTGGGCTACAGCG+GGG | - | chr2_3:1812549-1812568 | Msa0270590:CDS | 65.0% |
| ACTCCCCGCTGTAGCCCACA+TGG | + | chr2_3:1812555-1812574 | None:intergenic | 65.0% | |
| ! | ATGTGGGCTACAGCGGGGAG+TGG | - | chr2_3:1812554-1812573 | Msa0270590:CDS | 65.0% |
| CCACCACCACCACCAGAAGC+TGG | + | chr2_3:1812755-1812774 | None:intergenic | 65.0% | |
| !! | CCAGCTTCTGGTGGTGGTGG+TGG | - | chr2_3:1812752-1812771 | Msa0270590:CDS | 65.0% |
| !! | GCTTCTGGTGGTGGTGGTGG+TGG | - | chr2_3:1812755-1812774 | Msa0270590:CDS | 65.0% |
| ATCATCGCTGCCACCGGCAC+CGG | - | chr2_3:1812035-1812054 | Msa0270590:CDS | 65.0% | |
| ! | TGGGATTGTTCCGGTGCCGG+TGG | + | chr2_3:1812048-1812067 | None:intergenic | 65.0% |
| GGCTGGGATTGTTCCGGTGC+CGG | + | chr2_3:1812051-1812070 | None:intergenic | 65.0% | |
| ! | ATGGGCGAAGGTGACGGTGG+TGG | - | chr2_3:1812443-1812462 | Msa0270590:CDS | 65.0% |
| !! | GAAGGTGACGGTGGTGGAGG+AGG | - | chr2_3:1812449-1812468 | Msa0270590:CDS | 65.0% |
| ! | CAGCCATGTGGGCTACAGCG+GGG | - | chr2_3:1812549-1812568 | Msa0270590:CDS | 65.0% |
| ACTCCCCGCTGTAGCCCACA+TGG | + | chr2_3:1812555-1812574 | None:intergenic | 65.0% | |
| ! | ATGTGGGCTACAGCGGGGAG+TGG | - | chr2_3:1812554-1812573 | Msa0270590:CDS | 65.0% |
| CCACCACCACCACCAGAAGC+TGG | + | chr2_3:1812755-1812774 | None:intergenic | 65.0% | |
| !! | CCAGCTTCTGGTGGTGGTGG+TGG | - | chr2_3:1812752-1812771 | Msa0270590:CDS | 65.0% |
| !! | GCTTCTGGTGGTGGTGGTGG+TGG | - | chr2_3:1812755-1812774 | Msa0270590:CDS | 65.0% |
| CCGGTGGCAGCGATGATCGC+CGG | + | chr2_3:1812032-1812051 | None:intergenic | 70.0% | |
| CCGGCGATCATCGCTGCCAC+CGG | - | chr2_3:1812029-1812048 | Msa0270590:CDS | 70.0% | |
| ! | GGCGAAGGTGACGGTGGTGG+AGG | - | chr2_3:1812446-1812465 | Msa0270590:CDS | 70.0% |
| !! | GGTGACGGTGGTGGAGGAGG+TGG | - | chr2_3:1812452-1812471 | Msa0270590:CDS | 70.0% |
| !! | GACGGTGGTGGAGGAGGTGG+TGG | - | chr2_3:1812455-1812474 | Msa0270590:CDS | 70.0% |
| !! | GGTGGTGGAGGAGGTGGTGG+TGG | - | chr2_3:1812458-1812477 | Msa0270590:CDS | 70.0% |
| CCGGTGGCAGCGATGATCGC+CGG | + | chr2_3:1812032-1812051 | None:intergenic | 70.0% | |
| CCGGCGATCATCGCTGCCAC+CGG | - | chr2_3:1812029-1812048 | Msa0270590:CDS | 70.0% | |
| ! | GGCGAAGGTGACGGTGGTGG+AGG | - | chr2_3:1812446-1812465 | Msa0270590:CDS | 70.0% |
| !! | GGTGACGGTGGTGGAGGAGG+TGG | - | chr2_3:1812452-1812471 | Msa0270590:CDS | 70.0% |
| !! | GACGGTGGTGGAGGAGGTGG+TGG | - | chr2_3:1812455-1812474 | Msa0270590:CDS | 70.0% |
| !! | GGTGGTGGAGGAGGTGGTGG+TGG | - | chr2_3:1812458-1812477 | Msa0270590:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 1811477 | 1813042 | 1811477 | ID=Msa0270590;Name=Msa0270590 |
| chr2_3 | mRNA | 1811477 | 1813042 | 1811477 | ID=Msa0270590-mRNA-1;Parent=Msa0270590;Name=Msa0270590-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|521 |
| chr2_3 | exon | 1811477 | 1813042 | 1811477 | ID=Msa0270590-mRNA-1:exon:922;Parent=Msa0270590-mRNA-1 |
| chr2_3 | CDS | 1811477 | 1813042 | 1811477 | ID=Msa0270590-mRNA-1:cds;Parent=Msa0270590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
