AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0231400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231400 MtrunA17_Chr2g0277991 99.526 422 2 0 9 430 6 427 0.0 871
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231400 AT1G10780.2 65.083 421 146 1 10 430 5 424 0.0 584
Msa0231400 AT1G10780.1 65.394 419 144 1 12 430 1 418 0.0 583

Find 119 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCAAATGCTTGGTTTC+AGG 0.149041 2_2:+3615629 None:intergenic
TTATGGAACGTTTCCCATTT+AGG 0.175370 2_2:+3615899 None:intergenic
TGATCAAACTTATCCCTAAA+TGG 0.192449 2_2:-3615913 Msa0231400:CDS
CTTGAATCGTTGGTAAAGTA+TGG 0.220701 2_2:-3614867 Msa0231400:CDS
AGAGTATACATGATTGATTT+TGG 0.231137 2_2:-3615440 Msa0231400:CDS
AACCAAACCTTTGATTCTTT+TGG 0.254388 2_2:+3614449 None:intergenic
AAATCAACAAAATCAATTTC+TGG 0.256476 2_2:+3615269 None:intergenic
CTGTGTATGGCCTTGCTTCA+TGG 0.264549 2_2:-3616081 Msa0231400:CDS
TATGGAACGTTTCCCATTTA+GGG 0.268647 2_2:+3615900 None:intergenic
CTTCAAGGATCCTAAGATTA+TGG 0.284602 2_2:+3615882 None:intergenic
GCTTCATGGCTATCACTTGC+AGG 0.307648 2_2:-3616067 Msa0231400:CDS
GGGAAACGTTCCATAATCTT+AGG 0.315212 2_2:-3615892 Msa0231400:CDS
TACTGCCCTTTCTCTGTGTA+TGG 0.326751 2_2:-3616094 Msa0231400:CDS
GCCTACAGTCATGCTTATTC+AGG 0.329238 2_2:-3614479 Msa0231400:three_prime_UTR
TGAATTTGTGATTCCATGTT+TGG 0.332405 2_2:-3614946 Msa0231400:CDS
AGTAGCAACCTTGTCAGATT+TGG 0.335278 2_2:+3615806 None:intergenic
ACAACAAATGATCATTGCTT+TGG 0.342019 2_2:+3614346 None:intergenic
AATCTGTAAAATGCTGAAAT+TGG 0.347668 2_2:-3615360 Msa0231400:CDS
TTAGGATCCTTGAAGTTGTT+GGG 0.351315 2_2:-3615874 Msa0231400:CDS
TCAAGATTATGTTACACTTT+CGG 0.366892 2_2:-3614411 Msa0231400:three_prime_UTR
TGCAGTAAATGCAATGATTC+AGG 0.369212 2_2:-3615834 Msa0231400:CDS
TACAAGGCTGTAGTTGGATT+AGG 0.380330 2_2:-3615655 Msa0231400:CDS
CTTAGGATCCTTGAAGTTGT+TGG 0.389083 2_2:-3615875 Msa0231400:CDS
TTTATTGCTTGTCGATGCCT+TGG 0.396042 2_2:-3614310 Msa0231400:three_prime_UTR
TCTTCAAATGCTTGGTTTCA+GGG 0.396771 2_2:+3615630 None:intergenic
CAACAAATGATCATTGCTTT+GGG 0.397588 2_2:+3614347 None:intergenic
CCAATGCAATCCAACTTTGA+TGG 0.404251 2_2:+3615977 None:intergenic
TGAAAGATTCTTCAAATGCT+TGG 0.409351 2_2:+3615622 None:intergenic
CTCTTGCCCCAACAACTTCA+AGG 0.412272 2_2:+3615867 None:intergenic
TTATGTTACACTTTCGGAAA+AGG 0.412378 2_2:-3614405 Msa0231400:three_prime_UTR
AAGGCATCGACAAGCAATAA+AGG 0.420147 2_2:+3614312 None:intergenic
GACCAAAAGAATCAAAGGTT+TGG 0.420514 2_2:-3614451 Msa0231400:three_prime_UTR
GATCAAACTTATCCCTAAAT+GGG 0.424364 2_2:-3615912 Msa0231400:CDS
TCTTGGAAATTTATGCTACA+TGG 0.426045 2_2:-3614509 Msa0231400:three_prime_UTR
ACAAGGCTGTAGTTGGATTA+GGG 0.427712 2_2:-3615654 Msa0231400:CDS
CATTCGACTACCTGCACTGT+TGG 0.430763 2_2:+3615595 None:intergenic
ACAAAATCAATTTCTGGAAA+GGG 0.432172 2_2:+3615275 None:intergenic
TATCAAGATTCTTCAGATGA+AGG 0.439513 2_2:-3614823 Msa0231400:CDS
TATGTTACACTTTCGGAAAA+GGG 0.441973 2_2:-3614404 Msa0231400:three_prime_UTR
AACAAAATCAATTTCTGGAA+AGG 0.445993 2_2:+3615274 None:intergenic
TTATTGCTTGTCGATGCCTT+GGG 0.450150 2_2:-3614309 Msa0231400:three_prime_UTR
CACGGTGCATGTATCTGAAC+CGG 0.452753 2_2:+3614760 None:intergenic
TATATGAAGGTTGAATTCAC+CGG 0.457387 2_2:-3615317 Msa0231400:CDS
ACATGAAAGCCCATCAAAGT+TGG 0.466038 2_2:-3615987 Msa0231400:CDS
ATATCAAACTTGCGCAGCTT+GGG 0.468187 2_2:+3615233 None:intergenic
CTGGCATAGTGCTGCAAACA+TGG 0.469002 2_2:+3615202 None:intergenic
GCAAGGCCATACACAGAGAA+AGG 0.474113 2_2:+3616088 None:intergenic
ATGTGGAAACTCTAAAATTG+TGG 0.481641 2_2:-3615943 Msa0231400:CDS
AGGTCCGTCTCTCTCTCATC+TGG 0.487819 2_2:-3616047 Msa0231400:CDS
GATATCAAACTTGCGCAGCT+TGG 0.490212 2_2:+3615232 None:intergenic
CTCTCATCTGGAGCTTCGAA+TGG 0.496250 2_2:-3616035 Msa0231400:CDS
TTATCTAATTCAGAGAATGA+AGG 0.497659 2_2:-3614577 Msa0231400:intron
CGATGACTTCCTTGCAAAGA+TGG 0.498978 2_2:-3614373 Msa0231400:three_prime_UTR
AATGAGCACTCTTGAATCGT+TGG 0.500771 2_2:-3614877 Msa0231400:CDS
TCGAGGTACAAGGCTGTAGT+TGG 0.501402 2_2:-3615661 Msa0231400:CDS
ATGTACTGAAGTATGACATC+AGG 0.505612 2_2:+3616313 None:intergenic
ATCAGCCGTTGAGAGATTAG+AGG 0.507988 2_2:-3616128 Msa0231400:CDS
CTTTCAATTTCCAACAGTGC+AGG 0.508430 2_2:-3615605 Msa0231400:intron
CAACCTTGTCAGATTTGGAC+AGG 0.511798 2_2:+3615811 None:intergenic
CAATGCAATCCAACTTTGAT+GGG 0.512313 2_2:+3615978 None:intergenic
CCATCAAAGTTGGATTGCAT+TGG 0.513791 2_2:-3615977 Msa0231400:CDS
CAAGGCCATACACAGAGAAA+GGG 0.514970 2_2:+3616089 None:intergenic
TGACATCATTGTGAAAAGAA+TGG 0.515415 2_2:-3616152 Msa0231400:CDS
ATCAAGATTCTTCAGATGAA+GGG 0.518042 2_2:-3614822 Msa0231400:CDS
CTGCGCAAGTTTGATATCCA+TGG 0.520959 2_2:-3615227 Msa0231400:CDS
AGTACAGTAAAACAATGTCT+TGG 0.524086 2_2:-3614526 Msa0231400:three_prime_UTR
TATCTAATTCAGAGAATGAA+GGG 0.524169 2_2:-3614576 Msa0231400:intron
CCCTGGAGTTTCTGTCAATG+AGG 0.528486 2_2:-3615406 Msa0231400:CDS
CCCTCATTGACAGAAACTCC+AGG 0.531655 2_2:+3615405 None:intergenic
CTGACAAGGTTGCTACTGCT+TGG 0.532871 2_2:-3615800 Msa0231400:CDS
TGTGGAAACTCTAAAATTGT+GGG 0.532904 2_2:-3615942 Msa0231400:CDS
TGTGATTCCATGTTTGGAGG+AGG 0.535055 2_2:-3614940 Msa0231400:CDS
GAAAACAAGACAGAGAAACT+AGG 0.554685 2_2:+3614263 None:intergenic
TTGAATCGTTGGTAAAGTAT+GGG 0.554878 2_2:-3614866 Msa0231400:CDS
AAAACAAGACAGAGAAACTA+GGG 0.556967 2_2:+3614264 None:intergenic
TAGGATCCTTGAAGTTGTTG+GGG 0.559049 2_2:-3615873 Msa0231400:CDS
TGTGAAACATCTTTATATGA+AGG 0.559278 2_2:-3615330 Msa0231400:CDS
GCAATTGTGTTTCTAAGCGA+TGG 0.559701 2_2:-3616252 Msa0231400:CDS
ATGAAGACCTCCTCCAAACA+TGG 0.559835 2_2:+3614933 None:intergenic
ATTGAATCTCTCGAGGTACA+AGG 0.560371 2_2:-3615671 Msa0231400:CDS
CCTGGAGTTTCTGTCAATGA+GGG 0.562266 2_2:-3615405 Msa0231400:CDS
CAAACTTGCGCAGCTTGGGA+TGG 0.564636 2_2:+3615237 None:intergenic
TTGCTACTGCTTGGATGTGA+AGG 0.570826 2_2:-3615791 Msa0231400:CDS
GTGCTGCAAACATGGCTCCA+TGG 0.570847 2_2:+3615210 None:intergenic
ACAGAAACTCCAGGGATGCA+AGG 0.571452 2_2:+3615414 None:intergenic
AGGGAGACCAAAAGAATCAA+AGG 0.575875 2_2:-3614456 Msa0231400:three_prime_UTR
ATATGAAGGTTGAATTCACC+GGG 0.576078 2_2:-3615316 Msa0231400:CDS
TACAGTCATGCTTATTCAGG+AGG 0.577670 2_2:-3614476 Msa0231400:three_prime_UTR
GCAGGTTGATCGAAATTGAT+CGG 0.581191 2_2:+3615765 None:intergenic
ATATTGTCACATGTCAGTAA+TGG 0.592308 2_2:-3616292 Msa0231400:CDS
AATAAGCATGACTGTAGGCA+TGG 0.592723 2_2:+3614483 None:intergenic
GAGCTTCGAATGGACAACCT+TGG 0.594522 2_2:-3616025 Msa0231400:CDS
ATTCTATTCGAATTATCCCA+CGG 0.597758 2_2:+3614742 None:intergenic
GTATAATCTCATTATCGCCA+AGG 0.600599 2_2:+3616008 None:intergenic
GGCAGAGATTCGATTTCTGT+AGG 0.601489 2_2:+3616334 None:intergenic
TTGAAGAGCATCATAGTCCC+CGG 0.602248 2_2:+3615298 None:intergenic
TTTGGGCACCCATCTTTGCA+AGG 0.608811 2_2:+3614364 None:intergenic
ATTTGTGATTCCATGTTTGG+AGG 0.609528 2_2:-3614943 Msa0231400:CDS
CCCTAAAATTGAATCTCTCG+AGG 0.610186 2_2:-3615678 Msa0231400:CDS
AGTTGTTGGGGCAAGAGTCG+AGG 0.613896 2_2:-3615861 Msa0231400:CDS
AGGCGGAGATTCGATTGCTG+TGG 0.622516 2_2:+3616354 None:intergenic
CAAGTGATAGCCATGAAGCA+AGG 0.624718 2_2:+3616071 None:intergenic
GGTTCAGATACATGCACCGT+GGG 0.628609 2_2:-3614758 Msa0231400:CDS
CTGAAGAATCTTGATAACCA+TGG 0.631753 2_2:+3614830 None:intergenic
AGCTCCAGATGAGAGAGAGA+CGG 0.634676 2_2:+3616043 None:intergenic
CTGGAGTTTCTGTCAATGAG+GGG 0.644439 2_2:-3615404 Msa0231400:CDS
GATGACTTCCTTGCAAAGAT+GGG 0.646616 2_2:-3614372 Msa0231400:three_prime_UTR
TAGCTCCTCTAATCTCTCAA+CGG 0.648817 2_2:+3616123 None:intergenic
TGGAGTTTCTGTCAATGAGG+GGG 0.656210 2_2:-3615403 Msa0231400:CDS
CCTCATTGACAGAAACTCCA+GGG 0.657818 2_2:+3615406 None:intergenic
AATTGCAATATGCAACATCA+CGG 0.658583 2_2:+3616269 None:intergenic
ACAGTCATGCTTATTCAGGA+GGG 0.667155 2_2:-3614475 Msa0231400:three_prime_UTR
AGGCCTGTCCAAATCTGACA+AGG 0.667331 2_2:-3615814 Msa0231400:CDS
TCCTGAATAAGCATGACTGT+AGG 0.679281 2_2:+3614478 None:intergenic
AGAGATTCGATTTCTGTAGG+CGG 0.681192 2_2:+3616337 None:intergenic
CATTGGTGCAGCAGTCAATG+TGG 0.696850 2_2:-3615960 Msa0231400:CDS
CGGTTCAGATACATGCACCG+TGG 0.706295 2_2:-3614759 Msa0231400:CDS
GTGGAAACTCTAAAATTGTG+GGG 0.713865 2_2:-3615941 Msa0231400:CDS
TATGAAGGTTGAATTCACCG+GGG 0.788676 2_2:-3615315 Msa0231400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAACAAAATCAATTTC+TGG + chr2_2:3615287-3615306 None:intergenic 20.0%
!! ATATTATAACCATGATTTCA+AGG - chr2_2:3615432-3615451 Msa0231400:CDS 20.0%
!!! AAGATATCCATTTATTTTAC+AGG - chr2_2:3615577-3615596 Msa0231400:intron 20.0%
!! AAATCAACAAAATCAATTTC+TGG + chr2_2:3615287-3615306 None:intergenic 20.0%
!! ATATTATAACCATGATTTCA+AGG - chr2_2:3615432-3615451 Msa0231400:CDS 20.0%
!!! AAGATATCCATTTATTTTAC+AGG - chr2_2:3615577-3615596 Msa0231400:intron 20.0%
! AAAGAAAATTGAGCTTACAA+AGG + chr2_2:3615068-3615087 None:intergenic 25.0%
!!! AGAGTATACATGATTGATTT+TGG - chr2_2:3615113-3615132 Msa0231400:intron 25.0%
! AATCTGTAAAATGCTGAAAT+TGG - chr2_2:3615193-3615212 Msa0231400:CDS 25.0%
! TGTGAAACATCTTTATATGA+AGG - chr2_2:3615223-3615242 Msa0231400:CDS 25.0%
!! ACAAAATCAATTTCTGGAAA+GGG + chr2_2:3615281-3615300 None:intergenic 25.0%
!! AACAAAATCAATTTCTGGAA+AGG + chr2_2:3615282-3615301 None:intergenic 25.0%
! GAATCAACCTGTAAAATAAA+TGG + chr2_2:3615587-3615606 None:intergenic 25.0%
!! ATTTTCTGTTCAGCATTTAA+TGG + chr2_2:3615659-3615678 None:intergenic 25.0%
! TAAAGTATGGGAAAAATCTA+AGG - chr2_2:3615699-3615718 Msa0231400:CDS 25.0%
!!! ATTTTTTTGATGAGATTTGC+CGG - chr2_2:3615774-3615793 Msa0231400:CDS 25.0%
!! TTGATGCAATTTTTAACACA+GGG - chr2_2:3615839-3615858 Msa0231400:CDS 25.0%
!!! TGATAATTAGTTCACTTTTG+TGG - chr2_2:3615902-3615921 Msa0231400:CDS 25.0%
! TTATCTAATTCAGAGAATGA+AGG - chr2_2:3615976-3615995 Msa0231400:CDS 25.0%
! TATCTAATTCAGAGAATGAA+GGG - chr2_2:3615977-3615996 Msa0231400:CDS 25.0%
! TCAAGATTATGTTACACTTT+CGG - chr2_2:3616142-3616161 Msa0231400:CDS 25.0%
! AAAGAAAATTGAGCTTACAA+AGG + chr2_2:3615068-3615087 None:intergenic 25.0%
!!! AGAGTATACATGATTGATTT+TGG - chr2_2:3615113-3615132 Msa0231400:intron 25.0%
! AATCTGTAAAATGCTGAAAT+TGG - chr2_2:3615193-3615212 Msa0231400:CDS 25.0%
! TGTGAAACATCTTTATATGA+AGG - chr2_2:3615223-3615242 Msa0231400:CDS 25.0%
!! ACAAAATCAATTTCTGGAAA+GGG + chr2_2:3615281-3615300 None:intergenic 25.0%
!! AACAAAATCAATTTCTGGAA+AGG + chr2_2:3615282-3615301 None:intergenic 25.0%
! GAATCAACCTGTAAAATAAA+TGG + chr2_2:3615587-3615606 None:intergenic 25.0%
!! ATTTTCTGTTCAGCATTTAA+TGG + chr2_2:3615659-3615678 None:intergenic 25.0%
! TAAAGTATGGGAAAAATCTA+AGG - chr2_2:3615699-3615718 Msa0231400:CDS 25.0%
!!! ATTTTTTTGATGAGATTTGC+CGG - chr2_2:3615774-3615793 Msa0231400:CDS 25.0%
!! TTGATGCAATTTTTAACACA+GGG - chr2_2:3615839-3615858 Msa0231400:CDS 25.0%
!!! TGATAATTAGTTCACTTTTG+TGG - chr2_2:3615902-3615921 Msa0231400:CDS 25.0%
! TTATCTAATTCAGAGAATGA+AGG - chr2_2:3615976-3615995 Msa0231400:CDS 25.0%
! TATCTAATTCAGAGAATGAA+GGG - chr2_2:3615977-3615996 Msa0231400:CDS 25.0%
! TCAAGATTATGTTACACTTT+CGG - chr2_2:3616142-3616161 Msa0231400:CDS 25.0%
ATATTGTCACATGTCAGTAA+TGG - chr2_2:3614261-3614280 Msa0231400:three_prime_UTR 30.0%
AATTGCAATATGCAACATCA+CGG + chr2_2:3614287-3614306 None:intergenic 30.0%
! CAATGATGTCAGAATTTTCA+CGG + chr2_2:3614392-3614411 None:intergenic 30.0%
TGACATCATTGTGAAAAGAA+TGG - chr2_2:3614401-3614420 Msa0231400:three_prime_UTR 30.0%
!! ATGTGGAAACTCTAAAATTG+TGG - chr2_2:3614610-3614629 Msa0231400:intron 30.0%
!! TGTGGAAACTCTAAAATTGT+GGG - chr2_2:3614611-3614630 Msa0231400:intron 30.0%
TGATCAAACTTATCCCTAAA+TGG - chr2_2:3614640-3614659 Msa0231400:intron 30.0%
GATCAAACTTATCCCTAAAT+GGG - chr2_2:3614641-3614660 Msa0231400:intron 30.0%
TGAAAGATTCTTCAAATGCT+TGG + chr2_2:3614934-3614953 None:intergenic 30.0%
GGAGAGCAATAAAAAAACAA+AGG + chr2_2:3615021-3615040 None:intergenic 30.0%
!!! TTGTTTTTTTATTGCTCTCC+TGG - chr2_2:3615021-3615040 Msa0231400:intron 30.0%
TCCTGGAATTTACTAAAAAG+TGG - chr2_2:3615038-3615057 Msa0231400:intron 30.0%
!!! ACCACTTTTTAGTAAATTCC+AGG + chr2_2:3615042-3615061 None:intergenic 30.0%
! TTTACTTGTTAATTGCTTGC+AGG - chr2_2:3615089-3615108 Msa0231400:intron 30.0%
! TTACTTGTTAATTGCTTGCA+GGG - chr2_2:3615090-3615109 Msa0231400:intron 30.0%
TATATGAAGGTTGAATTCAC+CGG - chr2_2:3615236-3615255 Msa0231400:CDS 30.0%
TTATAACCATGATTTCAAGG+AGG - chr2_2:3615435-3615454 Msa0231400:CDS 30.0%
TGAATTTGTGATTCCATGTT+TGG - chr2_2:3615607-3615626 Msa0231400:CDS 30.0%
! TTGAATCGTTGGTAAAGTAT+GGG - chr2_2:3615687-3615706 Msa0231400:CDS 30.0%
TATCAAGATTCTTCAGATGA+AGG - chr2_2:3615730-3615749 Msa0231400:CDS 30.0%
ATCAAGATTCTTCAGATGAA+GGG - chr2_2:3615731-3615750 Msa0231400:CDS 30.0%
ATTCTATTCGAATTATCCCA+CGG + chr2_2:3615814-3615833 None:intergenic 30.0%
! CTTGATGCAATTTTTAACAC+AGG - chr2_2:3615838-3615857 Msa0231400:CDS 30.0%
! ACTGTACTTTTGACAATCAT+GGG + chr2_2:3616015-3616034 None:intergenic 30.0%
! TACTGTACTTTTGACAATCA+TGG + chr2_2:3616016-3616035 None:intergenic 30.0%
AGTACAGTAAAACAATGTCT+TGG - chr2_2:3616027-3616046 Msa0231400:CDS 30.0%
TCTTGGAAATTTATGCTACA+TGG - chr2_2:3616044-3616063 Msa0231400:CDS 30.0%
! AACCAAACCTTTGATTCTTT+TGG + chr2_2:3616107-3616126 None:intergenic 30.0%
TTATGTTACACTTTCGGAAA+AGG - chr2_2:3616148-3616167 Msa0231400:CDS 30.0%
TATGTTACACTTTCGGAAAA+GGG - chr2_2:3616149-3616168 Msa0231400:CDS 30.0%
CAACAAATGATCATTGCTTT+GGG + chr2_2:3616209-3616228 None:intergenic 30.0%
ACAACAAATGATCATTGCTT+TGG + chr2_2:3616210-3616229 None:intergenic 30.0%
AAAACAAGACAGAGAAACTA+GGG + chr2_2:3616292-3616311 None:intergenic 30.0%
ATATTGTCACATGTCAGTAA+TGG - chr2_2:3614261-3614280 Msa0231400:three_prime_UTR 30.0%
AATTGCAATATGCAACATCA+CGG + chr2_2:3614287-3614306 None:intergenic 30.0%
! CAATGATGTCAGAATTTTCA+CGG + chr2_2:3614392-3614411 None:intergenic 30.0%
TGACATCATTGTGAAAAGAA+TGG - chr2_2:3614401-3614420 Msa0231400:three_prime_UTR 30.0%
!! ATGTGGAAACTCTAAAATTG+TGG - chr2_2:3614610-3614629 Msa0231400:intron 30.0%
!! TGTGGAAACTCTAAAATTGT+GGG - chr2_2:3614611-3614630 Msa0231400:intron 30.0%
TGATCAAACTTATCCCTAAA+TGG - chr2_2:3614640-3614659 Msa0231400:intron 30.0%
GATCAAACTTATCCCTAAAT+GGG - chr2_2:3614641-3614660 Msa0231400:intron 30.0%
TGAAAGATTCTTCAAATGCT+TGG + chr2_2:3614934-3614953 None:intergenic 30.0%
GGAGAGCAATAAAAAAACAA+AGG + chr2_2:3615021-3615040 None:intergenic 30.0%
!!! TTGTTTTTTTATTGCTCTCC+TGG - chr2_2:3615021-3615040 Msa0231400:intron 30.0%
TCCTGGAATTTACTAAAAAG+TGG - chr2_2:3615038-3615057 Msa0231400:intron 30.0%
!!! ACCACTTTTTAGTAAATTCC+AGG + chr2_2:3615042-3615061 None:intergenic 30.0%
! TTTACTTGTTAATTGCTTGC+AGG - chr2_2:3615089-3615108 Msa0231400:intron 30.0%
! TTACTTGTTAATTGCTTGCA+GGG - chr2_2:3615090-3615109 Msa0231400:intron 30.0%
TATATGAAGGTTGAATTCAC+CGG - chr2_2:3615236-3615255 Msa0231400:CDS 30.0%
TTATAACCATGATTTCAAGG+AGG - chr2_2:3615435-3615454 Msa0231400:CDS 30.0%
TGAATTTGTGATTCCATGTT+TGG - chr2_2:3615607-3615626 Msa0231400:CDS 30.0%
! TTGAATCGTTGGTAAAGTAT+GGG - chr2_2:3615687-3615706 Msa0231400:CDS 30.0%
TATCAAGATTCTTCAGATGA+AGG - chr2_2:3615730-3615749 Msa0231400:CDS 30.0%
ATCAAGATTCTTCAGATGAA+GGG - chr2_2:3615731-3615750 Msa0231400:CDS 30.0%
ATTCTATTCGAATTATCCCA+CGG + chr2_2:3615814-3615833 None:intergenic 30.0%
! CTTGATGCAATTTTTAACAC+AGG - chr2_2:3615838-3615857 Msa0231400:CDS 30.0%
! ACTGTACTTTTGACAATCAT+GGG + chr2_2:3616015-3616034 None:intergenic 30.0%
! TACTGTACTTTTGACAATCA+TGG + chr2_2:3616016-3616035 None:intergenic 30.0%
AGTACAGTAAAACAATGTCT+TGG - chr2_2:3616027-3616046 Msa0231400:CDS 30.0%
TCTTGGAAATTTATGCTACA+TGG - chr2_2:3616044-3616063 Msa0231400:CDS 30.0%
! AACCAAACCTTTGATTCTTT+TGG + chr2_2:3616107-3616126 None:intergenic 30.0%
TTATGTTACACTTTCGGAAA+AGG - chr2_2:3616148-3616167 Msa0231400:CDS 30.0%
TATGTTACACTTTCGGAAAA+GGG - chr2_2:3616149-3616168 Msa0231400:CDS 30.0%
CAACAAATGATCATTGCTTT+GGG + chr2_2:3616209-3616228 None:intergenic 30.0%
ACAACAAATGATCATTGCTT+TGG + chr2_2:3616210-3616229 None:intergenic 30.0%
AAAACAAGACAGAGAAACTA+GGG + chr2_2:3616292-3616311 None:intergenic 30.0%
ATGTACTGAAGTATGACATC+AGG + chr2_2:3614243-3614262 None:intergenic 35.0%
GTATAATCTCATTATCGCCA+AGG + chr2_2:3614548-3614567 None:intergenic 35.0%
CAATGCAATCCAACTTTGAT+GGG + chr2_2:3614578-3614597 None:intergenic 35.0%
!! GTGGAAACTCTAAAATTGTG+GGG - chr2_2:3614612-3614631 Msa0231400:intron 35.0%
TATGGAACGTTTCCCATTTA+GGG + chr2_2:3614656-3614675 None:intergenic 35.0%
TTATGGAACGTTTCCCATTT+AGG + chr2_2:3614657-3614676 None:intergenic 35.0%
CTTCAAGGATCCTAAGATTA+TGG + chr2_2:3614674-3614693 None:intergenic 35.0%
TTAGGATCCTTGAAGTTGTT+GGG - chr2_2:3614679-3614698 Msa0231400:intron 35.0%
TGCAGTAAATGCAATGATTC+AGG - chr2_2:3614719-3614738 Msa0231400:three_prime_UTR 35.0%
! AAGCTGGATTTTTATGGTCT+TGG - chr2_2:3614828-3614847 Msa0231400:CDS 35.0%
! AGCTGGATTTTTATGGTCTT+GGG - chr2_2:3614829-3614848 Msa0231400:CDS 35.0%
! CTCGAGAGATTCAATTTTAG+GGG + chr2_2:3614877-3614896 None:intergenic 35.0%
! CCTCGAGAGATTCAATTTTA+GGG + chr2_2:3614878-3614897 None:intergenic 35.0%
! ACCTCGAGAGATTCAATTTT+AGG + chr2_2:3614879-3614898 None:intergenic 35.0%
TCTTCAAATGCTTGGTTTCA+GGG + chr2_2:3614926-3614945 None:intergenic 35.0%
TTCTTCAAATGCTTGGTTTC+AGG + chr2_2:3614927-3614946 None:intergenic 35.0%
ATATGAAGGTTGAATTCACC+GGG - chr2_2:3615237-3615256 Msa0231400:CDS 35.0%
!! CATGTTTTAGACTGTTCTTC+TGG + chr2_2:3615373-3615392 None:intergenic 35.0%
! TACACACTATAGCTTTTGGA+AGG - chr2_2:3615459-3615478 Msa0231400:intron 35.0%
ATTTGTGATTCCATGTTTGG+AGG - chr2_2:3615610-3615629 Msa0231400:CDS 35.0%
! CTTGAATCGTTGGTAAAGTA+TGG - chr2_2:3615686-3615705 Msa0231400:CDS 35.0%
! CTGAAGAATCTTGATAACCA+TGG + chr2_2:3615726-3615745 None:intergenic 35.0%
TTCAGAAGTCTAACAGTAAC+TGG + chr2_2:3615881-3615900 None:intergenic 35.0%
! ACTTTTGACAATCATGGGAA+AGG + chr2_2:3616010-3616029 None:intergenic 35.0%
GACCAAAAGAATCAAAGGTT+TGG - chr2_2:3616102-3616121 Msa0231400:CDS 35.0%
GAAAACAAGACAGAGAAACT+AGG + chr2_2:3616293-3616312 None:intergenic 35.0%
ATGTACTGAAGTATGACATC+AGG + chr2_2:3614243-3614262 None:intergenic 35.0%
GTATAATCTCATTATCGCCA+AGG + chr2_2:3614548-3614567 None:intergenic 35.0%
CAATGCAATCCAACTTTGAT+GGG + chr2_2:3614578-3614597 None:intergenic 35.0%
!! GTGGAAACTCTAAAATTGTG+GGG - chr2_2:3614612-3614631 Msa0231400:intron 35.0%
TATGGAACGTTTCCCATTTA+GGG + chr2_2:3614656-3614675 None:intergenic 35.0%
TTATGGAACGTTTCCCATTT+AGG + chr2_2:3614657-3614676 None:intergenic 35.0%
CTTCAAGGATCCTAAGATTA+TGG + chr2_2:3614674-3614693 None:intergenic 35.0%
TTAGGATCCTTGAAGTTGTT+GGG - chr2_2:3614679-3614698 Msa0231400:intron 35.0%
TGCAGTAAATGCAATGATTC+AGG - chr2_2:3614719-3614738 Msa0231400:three_prime_UTR 35.0%
! AAGCTGGATTTTTATGGTCT+TGG - chr2_2:3614828-3614847 Msa0231400:CDS 35.0%
! AGCTGGATTTTTATGGTCTT+GGG - chr2_2:3614829-3614848 Msa0231400:CDS 35.0%
! CTCGAGAGATTCAATTTTAG+GGG + chr2_2:3614877-3614896 None:intergenic 35.0%
! CCTCGAGAGATTCAATTTTA+GGG + chr2_2:3614878-3614897 None:intergenic 35.0%
! ACCTCGAGAGATTCAATTTT+AGG + chr2_2:3614879-3614898 None:intergenic 35.0%
TCTTCAAATGCTTGGTTTCA+GGG + chr2_2:3614926-3614945 None:intergenic 35.0%
TTCTTCAAATGCTTGGTTTC+AGG + chr2_2:3614927-3614946 None:intergenic 35.0%
ATATGAAGGTTGAATTCACC+GGG - chr2_2:3615237-3615256 Msa0231400:CDS 35.0%
!! CATGTTTTAGACTGTTCTTC+TGG + chr2_2:3615373-3615392 None:intergenic 35.0%
! TACACACTATAGCTTTTGGA+AGG - chr2_2:3615459-3615478 Msa0231400:intron 35.0%
ATTTGTGATTCCATGTTTGG+AGG - chr2_2:3615610-3615629 Msa0231400:CDS 35.0%
! CTTGAATCGTTGGTAAAGTA+TGG - chr2_2:3615686-3615705 Msa0231400:CDS 35.0%
! CTGAAGAATCTTGATAACCA+TGG + chr2_2:3615726-3615745 None:intergenic 35.0%
TTCAGAAGTCTAACAGTAAC+TGG + chr2_2:3615881-3615900 None:intergenic 35.0%
! ACTTTTGACAATCATGGGAA+AGG + chr2_2:3616010-3616029 None:intergenic 35.0%
GACCAAAAGAATCAAAGGTT+TGG - chr2_2:3616102-3616121 Msa0231400:CDS 35.0%
GAAAACAAGACAGAGAAACT+AGG + chr2_2:3616293-3616312 None:intergenic 35.0%
AGAGATTCGATTTCTGTAGG+CGG + chr2_2:3614219-3614238 None:intergenic 40.0%
! GCAATTGTGTTTCTAAGCGA+TGG - chr2_2:3614301-3614320 Msa0231400:three_prime_UTR 40.0%
! ATGTCAGAATTTTCACGGTG+AGG + chr2_2:3614387-3614406 None:intergenic 40.0%
TAGCTCCTCTAATCTCTCAA+CGG + chr2_2:3614433-3614452 None:intergenic 40.0%
ACATGAAAGCCCATCAAAGT+TGG - chr2_2:3614566-3614585 Msa0231400:three_prime_UTR 40.0%
CCAATGCAATCCAACTTTGA+TGG + chr2_2:3614579-3614598 None:intergenic 40.0%
CCATCAAAGTTGGATTGCAT+TGG - chr2_2:3614576-3614595 Msa0231400:intron 40.0%
GGGAAACGTTCCATAATCTT+AGG - chr2_2:3614661-3614680 Msa0231400:intron 40.0%
CTTAGGATCCTTGAAGTTGT+TGG - chr2_2:3614678-3614697 Msa0231400:intron 40.0%
TAGGATCCTTGAAGTTGTTG+GGG - chr2_2:3614680-3614699 Msa0231400:intron 40.0%
AGTAGCAACCTTGTCAGATT+TGG + chr2_2:3614750-3614769 None:intergenic 40.0%
!! GCAGGTTGATCGAAATTGAT+CGG + chr2_2:3614791-3614810 None:intergenic 40.0%
!!! TTCGATCAACCTGCCATTTT+TGG - chr2_2:3614797-3614816 Msa0231400:CDS 40.0%
! CAGTGCAAGCTGGATTTTTA+TGG - chr2_2:3614822-3614841 Msa0231400:CDS 40.0%
!! GAGAGATTCAATTTTAGGGG+AGG + chr2_2:3614874-3614893 None:intergenic 40.0%
CCCTAAAATTGAATCTCTCG+AGG - chr2_2:3614875-3614894 Msa0231400:CDS 40.0%
ATTGAATCTCTCGAGGTACA+AGG - chr2_2:3614882-3614901 Msa0231400:CDS 40.0%
TACAAGGCTGTAGTTGGATT+AGG - chr2_2:3614898-3614917 Msa0231400:CDS 40.0%
ACAAGGCTGTAGTTGGATTA+GGG - chr2_2:3614899-3614918 Msa0231400:CDS 40.0%
CTTTCAATTTCCAACAGTGC+AGG - chr2_2:3614948-3614967 Msa0231400:CDS 40.0%
TATGAAGGTTGAATTCACCG+GGG - chr2_2:3615238-3615257 Msa0231400:CDS 40.0%
ATATCAAACTTGCGCAGCTT+GGG + chr2_2:3615323-3615342 None:intergenic 40.0%
! AGGCTACACACTATAGCTTT+TGG - chr2_2:3615455-3615474 Msa0231400:intron 40.0%
!! CTGTTTGTTTTCTTCGACAC+AGG + chr2_2:3615486-3615505 None:intergenic 40.0%
CTGTGTCGAAGAAAACAAAC+AGG - chr2_2:3615484-3615503 Msa0231400:intron 40.0%
AATGAGCACTCTTGAATCGT+TGG - chr2_2:3615676-3615695 Msa0231400:CDS 40.0%
TGGGAAAAATCTAAGGACCA+TGG - chr2_2:3615706-3615725 Msa0231400:CDS 40.0%
AATAAGCATGACTGTAGGCA+TGG + chr2_2:3616073-3616092 None:intergenic 40.0%
TCCTGAATAAGCATGACTGT+AGG + chr2_2:3616078-3616097 None:intergenic 40.0%
TACAGTCATGCTTATTCAGG+AGG - chr2_2:3616077-3616096 Msa0231400:CDS 40.0%
ACAGTCATGCTTATTCAGGA+GGG - chr2_2:3616078-3616097 Msa0231400:CDS 40.0%
AGGGAGACCAAAAGAATCAA+AGG - chr2_2:3616097-3616116 Msa0231400:CDS 40.0%
GATGACTTCCTTGCAAAGAT+GGG - chr2_2:3616181-3616200 Msa0231400:CDS 40.0%
!! AAGGCATCGACAAGCAATAA+AGG + chr2_2:3616244-3616263 None:intergenic 40.0%
TTTATTGCTTGTCGATGCCT+TGG - chr2_2:3616243-3616262 Msa0231400:CDS 40.0%
TTATTGCTTGTCGATGCCTT+GGG - chr2_2:3616244-3616263 Msa0231400:CDS 40.0%
! GCCTTGGGCATAAGTTTTTA+AGG - chr2_2:3616259-3616278 Msa0231400:CDS 40.0%
GCCTTAAAAACTTATGCCCA+AGG + chr2_2:3616263-3616282 None:intergenic 40.0%
AGAGATTCGATTTCTGTAGG+CGG + chr2_2:3614219-3614238 None:intergenic 40.0%
! GCAATTGTGTTTCTAAGCGA+TGG - chr2_2:3614301-3614320 Msa0231400:three_prime_UTR 40.0%
! ATGTCAGAATTTTCACGGTG+AGG + chr2_2:3614387-3614406 None:intergenic 40.0%
TAGCTCCTCTAATCTCTCAA+CGG + chr2_2:3614433-3614452 None:intergenic 40.0%
ACATGAAAGCCCATCAAAGT+TGG - chr2_2:3614566-3614585 Msa0231400:three_prime_UTR 40.0%
CCAATGCAATCCAACTTTGA+TGG + chr2_2:3614579-3614598 None:intergenic 40.0%
CCATCAAAGTTGGATTGCAT+TGG - chr2_2:3614576-3614595 Msa0231400:intron 40.0%
GGGAAACGTTCCATAATCTT+AGG - chr2_2:3614661-3614680 Msa0231400:intron 40.0%
CTTAGGATCCTTGAAGTTGT+TGG - chr2_2:3614678-3614697 Msa0231400:intron 40.0%
TAGGATCCTTGAAGTTGTTG+GGG - chr2_2:3614680-3614699 Msa0231400:intron 40.0%
AGTAGCAACCTTGTCAGATT+TGG + chr2_2:3614750-3614769 None:intergenic 40.0%
!! GCAGGTTGATCGAAATTGAT+CGG + chr2_2:3614791-3614810 None:intergenic 40.0%
!!! TTCGATCAACCTGCCATTTT+TGG - chr2_2:3614797-3614816 Msa0231400:CDS 40.0%
! CAGTGCAAGCTGGATTTTTA+TGG - chr2_2:3614822-3614841 Msa0231400:CDS 40.0%
!! GAGAGATTCAATTTTAGGGG+AGG + chr2_2:3614874-3614893 None:intergenic 40.0%
CCCTAAAATTGAATCTCTCG+AGG - chr2_2:3614875-3614894 Msa0231400:CDS 40.0%
ATTGAATCTCTCGAGGTACA+AGG - chr2_2:3614882-3614901 Msa0231400:CDS 40.0%
TACAAGGCTGTAGTTGGATT+AGG - chr2_2:3614898-3614917 Msa0231400:CDS 40.0%
ACAAGGCTGTAGTTGGATTA+GGG - chr2_2:3614899-3614918 Msa0231400:CDS 40.0%
CTTTCAATTTCCAACAGTGC+AGG - chr2_2:3614948-3614967 Msa0231400:CDS 40.0%
TATGAAGGTTGAATTCACCG+GGG - chr2_2:3615238-3615257 Msa0231400:CDS 40.0%
ATATCAAACTTGCGCAGCTT+GGG + chr2_2:3615323-3615342 None:intergenic 40.0%
! AGGCTACACACTATAGCTTT+TGG - chr2_2:3615455-3615474 Msa0231400:intron 40.0%
!! CTGTTTGTTTTCTTCGACAC+AGG + chr2_2:3615486-3615505 None:intergenic 40.0%
CTGTGTCGAAGAAAACAAAC+AGG - chr2_2:3615484-3615503 Msa0231400:intron 40.0%
AATGAGCACTCTTGAATCGT+TGG - chr2_2:3615676-3615695 Msa0231400:CDS 40.0%
TGGGAAAAATCTAAGGACCA+TGG - chr2_2:3615706-3615725 Msa0231400:CDS 40.0%
AATAAGCATGACTGTAGGCA+TGG + chr2_2:3616073-3616092 None:intergenic 40.0%
TCCTGAATAAGCATGACTGT+AGG + chr2_2:3616078-3616097 None:intergenic 40.0%
TACAGTCATGCTTATTCAGG+AGG - chr2_2:3616077-3616096 Msa0231400:CDS 40.0%
ACAGTCATGCTTATTCAGGA+GGG - chr2_2:3616078-3616097 Msa0231400:CDS 40.0%
AGGGAGACCAAAAGAATCAA+AGG - chr2_2:3616097-3616116 Msa0231400:CDS 40.0%
GATGACTTCCTTGCAAAGAT+GGG - chr2_2:3616181-3616200 Msa0231400:CDS 40.0%
!! AAGGCATCGACAAGCAATAA+AGG + chr2_2:3616244-3616263 None:intergenic 40.0%
TTTATTGCTTGTCGATGCCT+TGG - chr2_2:3616243-3616262 Msa0231400:CDS 40.0%
TTATTGCTTGTCGATGCCTT+GGG - chr2_2:3616244-3616263 Msa0231400:CDS 40.0%
! GCCTTGGGCATAAGTTTTTA+AGG - chr2_2:3616259-3616278 Msa0231400:CDS 40.0%
GCCTTAAAAACTTATGCCCA+AGG + chr2_2:3616263-3616282 None:intergenic 40.0%
GGCAGAGATTCGATTTCTGT+AGG + chr2_2:3614222-3614241 None:intergenic 45.0%
ATCAGCCGTTGAGAGATTAG+AGG - chr2_2:3614425-3614444 Msa0231400:three_prime_UTR 45.0%
TACTGCCCTTTCTCTGTGTA+TGG - chr2_2:3614459-3614478 Msa0231400:three_prime_UTR 45.0%
CAAGGCCATACACAGAGAAA+GGG + chr2_2:3614467-3614486 None:intergenic 45.0%
CAAGTGATAGCCATGAAGCA+AGG + chr2_2:3614485-3614504 None:intergenic 45.0%
CAACCTTGTCAGATTTGGAC+AGG + chr2_2:3614745-3614764 None:intergenic 45.0%
TTGCTACTGCTTGGATGTGA+AGG - chr2_2:3614762-3614781 Msa0231400:CDS 45.0%
AGCTTGCACTGCTCCAAAAA+TGG + chr2_2:3614813-3614832 None:intergenic 45.0%
!!! ATTTTTGGAGCAGTGCAAGC+TGG - chr2_2:3614812-3614831 Msa0231400:CDS 45.0%
!! TTTTGGAAACCTTGCATCCC+TGG - chr2_2:3615130-3615149 Msa0231400:intron 45.0%
CCTCATTGACAGAAACTCCA+GGG + chr2_2:3615150-3615169 None:intergenic 45.0%
CCTGGAGTTTCTGTCAATGA+GGG - chr2_2:3615148-3615167 Msa0231400:intron 45.0%
CTGGAGTTTCTGTCAATGAG+GGG - chr2_2:3615149-3615168 Msa0231400:intron 45.0%
TGGAGTTTCTGTCAATGAGG+GGG - chr2_2:3615150-3615169 Msa0231400:intron 45.0%
!! TTGAAGAGCATCATAGTCCC+CGG + chr2_2:3615258-3615277 None:intergenic 45.0%
GATATCAAACTTGCGCAGCT+TGG + chr2_2:3615324-3615343 None:intergenic 45.0%
CTGCGCAAGTTTGATATCCA+TGG - chr2_2:3615326-3615345 Msa0231400:CDS 45.0%
GTGTAGCCTCCTTGAAATCA+TGG + chr2_2:3615444-3615463 None:intergenic 45.0%
TGTGATTCCATGTTTGGAGG+AGG - chr2_2:3615613-3615632 Msa0231400:CDS 45.0%
ATGAAGACCTCCTCCAAACA+TGG + chr2_2:3615623-3615642 None:intergenic 45.0%
GCCTACAGTCATGCTTATTC+AGG - chr2_2:3616074-3616093 Msa0231400:CDS 45.0%
CGATGACTTCCTTGCAAAGA+TGG - chr2_2:3616180-3616199 Msa0231400:CDS 45.0%
GGCAGAGATTCGATTTCTGT+AGG + chr2_2:3614222-3614241 None:intergenic 45.0%
ATCAGCCGTTGAGAGATTAG+AGG - chr2_2:3614425-3614444 Msa0231400:three_prime_UTR 45.0%
TACTGCCCTTTCTCTGTGTA+TGG - chr2_2:3614459-3614478 Msa0231400:three_prime_UTR 45.0%
CAAGGCCATACACAGAGAAA+GGG + chr2_2:3614467-3614486 None:intergenic 45.0%
CAAGTGATAGCCATGAAGCA+AGG + chr2_2:3614485-3614504 None:intergenic 45.0%
CAACCTTGTCAGATTTGGAC+AGG + chr2_2:3614745-3614764 None:intergenic 45.0%
TTGCTACTGCTTGGATGTGA+AGG - chr2_2:3614762-3614781 Msa0231400:CDS 45.0%
AGCTTGCACTGCTCCAAAAA+TGG + chr2_2:3614813-3614832 None:intergenic 45.0%
!!! ATTTTTGGAGCAGTGCAAGC+TGG - chr2_2:3614812-3614831 Msa0231400:CDS 45.0%
!! TTTTGGAAACCTTGCATCCC+TGG - chr2_2:3615130-3615149 Msa0231400:intron 45.0%
CCTCATTGACAGAAACTCCA+GGG + chr2_2:3615150-3615169 None:intergenic 45.0%
CCTGGAGTTTCTGTCAATGA+GGG - chr2_2:3615148-3615167 Msa0231400:intron 45.0%
CTGGAGTTTCTGTCAATGAG+GGG - chr2_2:3615149-3615168 Msa0231400:intron 45.0%
TGGAGTTTCTGTCAATGAGG+GGG - chr2_2:3615150-3615169 Msa0231400:intron 45.0%
!! TTGAAGAGCATCATAGTCCC+CGG + chr2_2:3615258-3615277 None:intergenic 45.0%
GATATCAAACTTGCGCAGCT+TGG + chr2_2:3615324-3615343 None:intergenic 45.0%
CTGCGCAAGTTTGATATCCA+TGG - chr2_2:3615326-3615345 Msa0231400:CDS 45.0%
GTGTAGCCTCCTTGAAATCA+TGG + chr2_2:3615444-3615463 None:intergenic 45.0%
TGTGATTCCATGTTTGGAGG+AGG - chr2_2:3615613-3615632 Msa0231400:CDS 45.0%
ATGAAGACCTCCTCCAAACA+TGG + chr2_2:3615623-3615642 None:intergenic 45.0%
GCCTACAGTCATGCTTATTC+AGG - chr2_2:3616074-3616093 Msa0231400:CDS 45.0%
CGATGACTTCCTTGCAAAGA+TGG - chr2_2:3616180-3616199 Msa0231400:CDS 45.0%
GCAAGGCCATACACAGAGAA+AGG + chr2_2:3614468-3614487 None:intergenic 50.0%
! CTGTGTATGGCCTTGCTTCA+TGG - chr2_2:3614472-3614491 Msa0231400:three_prime_UTR 50.0%
GCTTCATGGCTATCACTTGC+AGG - chr2_2:3614486-3614505 Msa0231400:three_prime_UTR 50.0%
AGCTCCAGATGAGAGAGAGA+CGG + chr2_2:3614513-3614532 None:intergenic 50.0%
! CTCTCATCTGGAGCTTCGAA+TGG - chr2_2:3614518-3614537 Msa0231400:three_prime_UTR 50.0%
GAGCTTCGAATGGACAACCT+TGG - chr2_2:3614528-3614547 Msa0231400:three_prime_UTR 50.0%
CATTGGTGCAGCAGTCAATG+TGG - chr2_2:3614593-3614612 Msa0231400:intron 50.0%
CTCTTGCCCCAACAACTTCA+AGG + chr2_2:3614689-3614708 None:intergenic 50.0%
AGGCCTGTCCAAATCTGACA+AGG - chr2_2:3614739-3614758 Msa0231400:exon 50.0%
CTGACAAGGTTGCTACTGCT+TGG - chr2_2:3614753-3614772 Msa0231400:CDS 50.0%
TGCACTGCTCCAAAAATGGC+AGG + chr2_2:3614809-3614828 None:intergenic 50.0%
TCGAGGTACAAGGCTGTAGT+TGG - chr2_2:3614892-3614911 Msa0231400:CDS 50.0%
CATTCGACTACCTGCACTGT+TGG + chr2_2:3614961-3614980 None:intergenic 50.0%
ACAGAAACTCCAGGGATGCA+AGG + chr2_2:3615142-3615161 None:intergenic 50.0%
CCCTGGAGTTTCTGTCAATG+AGG - chr2_2:3615147-3615166 Msa0231400:intron 50.0%
CCCTCATTGACAGAAACTCC+AGG + chr2_2:3615151-3615170 None:intergenic 50.0%
TGTCAATGAGGGGGATACAG+TGG - chr2_2:3615159-3615178 Msa0231400:intron 50.0%
CTGGCATAGTGCTGCAAACA+TGG + chr2_2:3615354-3615373 None:intergenic 50.0%
CACGGTGCATGTATCTGAAC+CGG + chr2_2:3615796-3615815 None:intergenic 50.0%
GGTTCAGATACATGCACCGT+GGG - chr2_2:3615795-3615814 Msa0231400:CDS 50.0%
TTTGGGCACCCATCTTTGCA+AGG + chr2_2:3616192-3616211 None:intergenic 50.0%
GCAAGGCCATACACAGAGAA+AGG + chr2_2:3614468-3614487 None:intergenic 50.0%
! CTGTGTATGGCCTTGCTTCA+TGG - chr2_2:3614472-3614491 Msa0231400:three_prime_UTR 50.0%
GCTTCATGGCTATCACTTGC+AGG - chr2_2:3614486-3614505 Msa0231400:three_prime_UTR 50.0%
AGCTCCAGATGAGAGAGAGA+CGG + chr2_2:3614513-3614532 None:intergenic 50.0%
! CTCTCATCTGGAGCTTCGAA+TGG - chr2_2:3614518-3614537 Msa0231400:three_prime_UTR 50.0%
GAGCTTCGAATGGACAACCT+TGG - chr2_2:3614528-3614547 Msa0231400:three_prime_UTR 50.0%
CATTGGTGCAGCAGTCAATG+TGG - chr2_2:3614593-3614612 Msa0231400:intron 50.0%
CTCTTGCCCCAACAACTTCA+AGG + chr2_2:3614689-3614708 None:intergenic 50.0%
AGGCCTGTCCAAATCTGACA+AGG - chr2_2:3614739-3614758 Msa0231400:exon 50.0%
CTGACAAGGTTGCTACTGCT+TGG - chr2_2:3614753-3614772 Msa0231400:CDS 50.0%
TGCACTGCTCCAAAAATGGC+AGG + chr2_2:3614809-3614828 None:intergenic 50.0%
TCGAGGTACAAGGCTGTAGT+TGG - chr2_2:3614892-3614911 Msa0231400:CDS 50.0%
CATTCGACTACCTGCACTGT+TGG + chr2_2:3614961-3614980 None:intergenic 50.0%
ACAGAAACTCCAGGGATGCA+AGG + chr2_2:3615142-3615161 None:intergenic 50.0%
CCCTGGAGTTTCTGTCAATG+AGG - chr2_2:3615147-3615166 Msa0231400:intron 50.0%
CCCTCATTGACAGAAACTCC+AGG + chr2_2:3615151-3615170 None:intergenic 50.0%
TGTCAATGAGGGGGATACAG+TGG - chr2_2:3615159-3615178 Msa0231400:intron 50.0%
CTGGCATAGTGCTGCAAACA+TGG + chr2_2:3615354-3615373 None:intergenic 50.0%
CACGGTGCATGTATCTGAAC+CGG + chr2_2:3615796-3615815 None:intergenic 50.0%
GGTTCAGATACATGCACCGT+GGG - chr2_2:3615795-3615814 Msa0231400:CDS 50.0%
TTTGGGCACCCATCTTTGCA+AGG + chr2_2:3616192-3616211 None:intergenic 50.0%
AGGCGGAGATTCGATTGCTG+TGG + chr2_2:3614202-3614221 None:intergenic 55.0%
AGGTCCGTCTCTCTCTCATC+TGG - chr2_2:3614506-3614525 Msa0231400:three_prime_UTR 55.0%
AGTTGTTGGGGCAAGAGTCG+AGG - chr2_2:3614692-3614711 Msa0231400:intron 55.0%
TGAGGGGGATACAGTGGTGT+TGG - chr2_2:3615165-3615184 Msa0231400:intron 55.0%
GAGGGGGATACAGTGGTGTT+GGG - chr2_2:3615166-3615185 Msa0231400:intron 55.0%
CAAACTTGCGCAGCTTGGGA+TGG + chr2_2:3615319-3615338 None:intergenic 55.0%
GTGCTGCAAACATGGCTCCA+TGG + chr2_2:3615346-3615365 None:intergenic 55.0%
CGGTTCAGATACATGCACCG+TGG - chr2_2:3615794-3615813 Msa0231400:CDS 55.0%
AGGCGGAGATTCGATTGCTG+TGG + chr2_2:3614202-3614221 None:intergenic 55.0%
AGGTCCGTCTCTCTCTCATC+TGG - chr2_2:3614506-3614525 Msa0231400:three_prime_UTR 55.0%
AGTTGTTGGGGCAAGAGTCG+AGG - chr2_2:3614692-3614711 Msa0231400:intron 55.0%
TGAGGGGGATACAGTGGTGT+TGG - chr2_2:3615165-3615184 Msa0231400:intron 55.0%
GAGGGGGATACAGTGGTGTT+GGG - chr2_2:3615166-3615185 Msa0231400:intron 55.0%
CAAACTTGCGCAGCTTGGGA+TGG + chr2_2:3615319-3615338 None:intergenic 55.0%
GTGCTGCAAACATGGCTCCA+TGG + chr2_2:3615346-3615365 None:intergenic 55.0%
CGGTTCAGATACATGCACCG+TGG - chr2_2:3615794-3615813 Msa0231400:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 3614195 3616380 3614195 ID=Msa0231400;Name=Msa0231400
chr2_2 mRNA 3614195 3616380 3614195 ID=Msa0231400-mRNA-1;Parent=Msa0231400;Name=Msa0231400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.75|1|0.66|0.5|4|437|430
chr2_2 exon 3614195 3614586 3614195 ID=Msa0231400-mRNA-1:exon:1469;Parent=Msa0231400-mRNA-1
chr2_2 exon 3614695 3614976 3614695 ID=Msa0231400-mRNA-1:exon:1468;Parent=Msa0231400-mRNA-1
chr2_2 exon 3615184 3615464 3615184 ID=Msa0231400-mRNA-1:exon:1467;Parent=Msa0231400-mRNA-1
chr2_2 exon 3615606 3616380 3615606 ID=Msa0231400-mRNA-1:exon:1466;Parent=Msa0231400-mRNA-1
chr2_2 CDS 3615606 3616380 3615606 ID=Msa0231400-mRNA-1:cds;Parent=Msa0231400-mRNA-1
chr2_2 CDS 3615184 3615464 3615184 ID=Msa0231400-mRNA-1:cds;Parent=Msa0231400-mRNA-1
chr2_2 CDS 3614740 3614976 3614740 ID=Msa0231400-mRNA-1:cds;Parent=Msa0231400-mRNA-1
chr2_2 three_prime_UTR 3614695 3614739 3614695 ID=Msa0231400-mRNA-1:three_prime_utr;Parent=Msa0231400-mRNA-1
chr2_2 three_prime_UTR 3614195 3614586 3614195 ID=Msa0231400-mRNA-1:three_prime_utr;Parent=Msa0231400-mRNA-1
Gene Sequence

>Msa0231400

TTGTCCACAGCAATCGAATCTCCGCCTACAGAAATCGAATCTCTGCCTGATGTCATACTTCAGTACATATTGTCACATGTCAGTAATGGCCGTGATGTTGCATATTGCAATTGTGTTTCTAAGCGATGGAAGAACTCAATGACTTGTATAAGAAGTCTCTATTTTACTCGCAATGCGTTTGATAACGCTCCTCACCGTGAAAATTCTGACATCATTGTGAAAAGAATGGTATCAGCCGTTGAGAGATTAGAGGAGCTAGTTGTTTACTGCCCTTTCTCTGTGTATGGCCTTGCTTCATGGCTATCACTTGCAGGTCCGTCTCTCTCTCATCTGGAGCTTCGAATGGACAACCTTGGCGATAATGAGATTATACATGAAAGCCCATCAAAGTTGGATTGCATTGGTGCAGCAGTCAATGTGGAAACTCTAAAATTGTGGGGTGTCTTGATCAAACTTATCCCTAAATGGGAAACGTTCCATAATCTTAGGATCCTTGAAGTTGTTGGGGCAAGAGTCGAGGATGCTGCAGTAAATGCAATGATTCAGGCCTGTCCAAATCTGACAAGGTTGCTACTGCTTGGATGTGAAGGTGTCCGATCAATTTCGATCAACCTGCCATTTTTGGAGCAGTGCAAGCTGGATTTTTATGGTCTTGGGAACTGTTCGCTTTCACTGACCTCCCCTAAAATTGAATCTCTCGAGGTACAAGGCTGTAGTTGGATTAGGGTCCCTGAAACCAAGCATTTGAAGAATCTTTCAATTTCCAACAGTGCAGGGAGAGTATACATGATTGATTTTGGAAACCTTGCATCCCTGGAGTTTCTGTCAATGAGGGGGATACAGTGGTGTTGGGATGCAATCTGTAAAATGCTGAAATTGGCAAGTGATGTGAAACATCTTTATATGAAGGTTGAATTCACCGGGGACTATGATGCTCTTCAACCCTTTCCAGAAATTGATTTTGTTGATTTCTTCAACAGCCATCCCAAGCTGCGCAAGTTTGATATCCATGGAGCCATGTTTGCAGCACTATGCCAGAAGAACAGTCTAAAACATGTTGATTCTGAATTTGTGATTCCATGTTTGGAGGAGGTCTTCATCACTGTGAGATCACCATTAAATGCTGAACAGAAAATGAGCACTCTTGAATCGTTGGTAAAGTATGGGAAAAATCTAAGGACCATGGTTATCAAGATTCTTCAGATGAAGGGTTCACATAACAGTGCTGATGATTTTTTTGATGAGATTTGCCGGTTCAGATACATGCACCGTGGGATAATTCGAATAGAATAA
Protein sequence

>Msa0231400

LSTAIESPPTEIESLPDVILQYILSHVSNGRDVAYCNCVSKRWKNSMTCIRSLYFTRNAFDNAPHRENSDIIVKRMVSAVERLEELVVYCPFSVYGLASWLSLAGPSLSHLELRMDNLGDNEIIHESPSKLDCIGAAVNVETLKLWGVLIKLIPKWETFHNLRILEVVGARVEDAAVNAMIQACPNLTRLLLLGCEGVRSISINLPFLEQCKLDFYGLGNCSLSLTSPKIESLEVQGCSWIRVPETKHLKNLSISNSAGRVYMIDFGNLASLEFLSMRGIQWCWDAICKMLKLASDVKHLYMKVEFTGDYDALQPFPEIDFVDFFNSHPKLRKFDIHGAMFAALCQKNSLKHVDSEFVIPCLEEVFITVRSPLNAEQKMSTLESLVKYGKNLRTMVIKILQMKGSHNSADDFFDEICRFRYMHRGIIRIE*