Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231810 | XP_003593117.2 | 81.967 | 61 | 6 | 1 | 1 | 61 | 337 | 392 | 5.36e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231810 | G7IL80 | 81.967 | 61 | 6 | 1 | 1 | 61 | 337 | 392 | 2.56e-24 | 103 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0231810 | Msa0231830 | 0.875227 | 3.637232e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231810 | MtrunA17_Chr2g0278561 | 81.967 | 61 | 6 | 1 | 1 | 61 | 337 | 392 | 4.93e-28 | 103 |
| Msa0231810 | MtrunA17_Chr2g0278021 | 60.870 | 69 | 25 | 2 | 1 | 67 | 213 | 281 | 8.89e-21 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 9 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCTCACAACTATTTCAAC+TGG | 0.356060 | 2_2:+4130575 | None:intergenic |
| TAATCAAGGTAATACTTTAC+AGG | 0.387298 | 2_2:-4130519 | Msa0231810:CDS |
| TACCTTGATTATTGTTGTTG+TGG | 0.442004 | 2_2:+4130531 | None:intergenic |
| AACCACAACAACAATAATCA+AGG | 0.522875 | 2_2:-4130533 | Msa0231810:CDS |
| TCAACTGGGTCAAATTCATG+TGG | 0.559483 | 2_2:+4130590 | None:intergenic |
| CAACTGGGTCAAATTCATGT+GGG | 0.581445 | 2_2:+4130591 | None:intergenic |
| ACCTCACAACTATTTCAACT+GGG | 0.643907 | 2_2:+4130576 | None:intergenic |
| ACCCAGTTGAAATAGTTGTG+AGG | 0.644210 | 2_2:-4130577 | Msa0231810:CDS |
| TCAAGGTAATACTTTACAGG+AGG | 0.644694 | 2_2:-4130516 | Msa0231810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAACTATAATTGT+GGG | + | chr2_2:4126348-4126367 | None:intergenic | 10.0% |
| !!! | TTATAGTTTTTTTTTTCTTA+TGG | - | chr2_2:4126352-4126371 | Msa0231810:intron | 10.0% |
| !! | TAAAAAGAAAAATGATATTA+TGG | - | chr2_2:4126519-4126538 | Msa0231810:intron | 10.0% |
| !!! | ATAAATCGAATTTTAATTAA+GGG | + | chr2_2:4126729-4126748 | None:intergenic | 10.0% |
| !!! | AATAAATCGAATTTTAATTA+AGG | + | chr2_2:4126730-4126749 | None:intergenic | 10.0% |
| !!! | AATTAAAATTCGATTTATTT+TGG | - | chr2_2:4126731-4126750 | Msa0231810:intron | 10.0% |
| !!! | TAATAGAATTTTAAATAATG+AGG | - | chr2_2:4129330-4129349 | Msa0231810:intron | 10.0% |
| !!! | AATAGAATTTTAAATAATGA+GGG | - | chr2_2:4129331-4129350 | Msa0231810:intron | 10.0% |
| !! | AAAAAAAAACTATAATTGTG+GGG | + | chr2_2:4126347-4126366 | None:intergenic | 15.0% |
| !! | GAAAAAAAAAACTATAATTG+TGG | + | chr2_2:4126349-4126368 | None:intergenic | 15.0% |
| !! | AACAACAAAAAAAAACTTAT+AGG | + | chr2_2:4126385-4126404 | None:intergenic | 15.0% |
| !!! | TTTATTTTTCTTCTTATTCT+TGG | - | chr2_2:4126956-4126975 | Msa0231810:intron | 15.0% |
| !!! | TTCCATATTTTTATATCAAT+AGG | - | chr2_2:4127154-4127173 | Msa0231810:intron | 15.0% |
| !! | TTTAAGAGAATTAATTGTAT+TGG | - | chr2_2:4127419-4127438 | Msa0231810:intron | 15.0% |
| !!! | CTTGATTTAATTATTTTGAT+TGG | + | chr2_2:4127732-4127751 | None:intergenic | 15.0% |
| !! | AAAAAAATGTAAAGATAGTA+AGG | - | chr2_2:4127846-4127865 | Msa0231810:intron | 15.0% |
| !! | AAAAAATGTAAAGATAGTAA+GGG | - | chr2_2:4127847-4127866 | Msa0231810:intron | 15.0% |
| !! | AAAGATAATGAAAGATATAA+AGG | - | chr2_2:4129355-4129374 | Msa0231810:intron | 15.0% |
| !! | ATTGAATGATTAATGATTAA+TGG | - | chr2_2:4129525-4129544 | Msa0231810:intron | 15.0% |
| !!! | GTGTTTAATTTAATATATAG+TGG | - | chr2_2:4129807-4129826 | Msa0231810:intron | 15.0% |
| !!! | ATGAGTATTTTTTTTTTTTG+TGG | - | chr2_2:4130139-4130158 | Msa0231810:intron | 15.0% |
| !!! | AATTTGATACTCCATATTTT+AGG | + | chr2_2:4125932-4125951 | None:intergenic | 20.0% |
| !!! | AAGCTCTAATATATTTTAGT+TGG | + | chr2_2:4126049-4126068 | None:intergenic | 20.0% |
| !!! | CAACAACTTTTAAATTTTCA+AGG | - | chr2_2:4126488-4126507 | Msa0231810:intron | 20.0% |
| !!! | TTGAATTCACCATTTATTTT+AGG | - | chr2_2:4126654-4126673 | Msa0231810:intron | 20.0% |
| !! | GCAATTTAACCTAAAATAAA+TGG | + | chr2_2:4126666-4126685 | None:intergenic | 20.0% |
| !!! | TTTAGGTTAAATTGCATTTT+TGG | - | chr2_2:4126671-4126690 | Msa0231810:intron | 20.0% |
| !! | GATACTACTTAAATAGTTAA+GGG | + | chr2_2:4126698-4126717 | None:intergenic | 20.0% |
| !!! | CGTTTTTGAATTAAATCTAA+CGG | + | chr2_2:4126794-4126813 | None:intergenic | 20.0% |
| !!! | AAAATGATTGCTTTTACTTT+TGG | + | chr2_2:4127126-4127145 | None:intergenic | 20.0% |
| !! | TGCCTATTGATATAAAAATA+TGG | + | chr2_2:4127159-4127178 | None:intergenic | 20.0% |
| !!! | TACTAGTCATATTTTCTTTT+AGG | - | chr2_2:4127265-4127284 | Msa0231810:intron | 20.0% |
| !! | AATTAATTGTATTGGAACTT+TGG | - | chr2_2:4127427-4127446 | Msa0231810:intron | 20.0% |
| !!! | TTAATTTTCAGTTTCAATGT+TGG | - | chr2_2:4127516-4127535 | Msa0231810:intron | 20.0% |
| !!! | TTGTTGTATATTTTAGTTGA+TGG | + | chr2_2:4127656-4127675 | None:intergenic | 20.0% |
| !!! | AAAGTAGAAATTTAAGACTT+TGG | - | chr2_2:4128274-4128293 | Msa0231810:intron | 20.0% |
| !!! | TCTATTTGAAACTTTTCATA+TGG | + | chr2_2:4128857-4128876 | None:intergenic | 20.0% |
| !! | TTCTTATAATAATGATCGAA+TGG | + | chr2_2:4128886-4128905 | None:intergenic | 20.0% |
| !! | TAGATTTATTGTGTAAATGA+CGG | - | chr2_2:4128919-4128938 | Msa0231810:intron | 20.0% |
| !! | GAAAATGAGATATTAAAAAG+TGG | - | chr2_2:4129582-4129601 | Msa0231810:intron | 20.0% |
| !! | TAAAAAGTGGTAAAATTAAG+TGG | - | chr2_2:4129595-4129614 | Msa0231810:intron | 20.0% |
| !!! | TAATATATAGTGGATCAAAT+TGG | - | chr2_2:4129817-4129836 | Msa0231810:intron | 20.0% |
| !! | TAAAAGCAACAAAAGAAAAT+TGG | + | chr2_2:4129843-4129862 | None:intergenic | 20.0% |
| !! | AGCATTATACTTAAAATCAA+TGG | - | chr2_2:4130006-4130025 | Msa0231810:intron | 20.0% |
| !! | AAATCAATGGTTAATTCATA+AGG | - | chr2_2:4130019-4130038 | Msa0231810:intron | 20.0% |
| !! | AGTTCATAAGGTAATTTATT+TGG | - | chr2_2:4130085-4130104 | Msa0231810:intron | 20.0% |
| !! | AGTTCATAAGGTAATTTATT+TGG | - | chr2_2:4130085-4130104 | Msa0231810:intron | 20.0% |
| !!! | AGTATTTTTTTTTTTTGTGG+TGG | - | chr2_2:4130142-4130161 | Msa0231810:intron | 20.0% |
| !!! | TAGGATTTTTTTTTTTTTGG+TGG | - | chr2_2:4130328-4130347 | Msa0231810:intron | 20.0% |
| ! | TAATCAAGGTAATACTTTAC+AGG | - | chr2_2:4125801-4125820 | Msa0231810:intron | 25.0% |
| ! | TTAGTTGGAGAATCAAAATA+GGG | + | chr2_2:4126034-4126053 | None:intergenic | 25.0% |
| ! | TTTAGTTGGAGAATCAAAAT+AGG | + | chr2_2:4126035-4126054 | None:intergenic | 25.0% |
| ! | AAGTGCAAAATGAAGAAAAA+GGG | - | chr2_2:4126081-4126100 | Msa0231810:intron | 25.0% |
| ! | AGTTTATGAAGTCAGTTTAT+TGG | - | chr2_2:4126438-4126457 | Msa0231810:intron | 25.0% |
| ! | GTTTATGAAGTCAGTTTATT+GGG | - | chr2_2:4126439-4126458 | Msa0231810:intron | 25.0% |
| ! | CGATACTACTTAAATAGTTA+AGG | + | chr2_2:4126699-4126718 | None:intergenic | 25.0% |
| ! | TTGAATTAAATCTAACGGAA+AGG | + | chr2_2:4126789-4126808 | None:intergenic | 25.0% |
| ! | ATGATATGAAGATGAAAAAG+AGG | + | chr2_2:4126840-4126859 | None:intergenic | 25.0% |
| !!! | TTTTCTTCTGGAATTTTTGT+AGG | + | chr2_2:4126889-4126908 | None:intergenic | 25.0% |
| !! | TATATCACTCTAAAAACGTA+AGG | + | chr2_2:4126921-4126940 | None:intergenic | 25.0% |
| !! | TATAAATTGAGCTTCACTTT+TGG | + | chr2_2:4127039-4127058 | None:intergenic | 25.0% |
| !! | TAGTCATATTTTCTTTTAGG+TGG | - | chr2_2:4127268-4127287 | Msa0231810:intron | 25.0% |
| !!! | TGTTAAGTTTTGTACAACTT+GGG | + | chr2_2:4127596-4127615 | None:intergenic | 25.0% |
| !!! | TTGTTAAGTTTTGTACAACT+TGG | + | chr2_2:4127597-4127616 | None:intergenic | 25.0% |
| ! | TTGATTGCAAATTTCAACAT+GGG | + | chr2_2:4127686-4127705 | None:intergenic | 25.0% |
| ! | TAATAATCTCAACACATAGA+CGG | + | chr2_2:4127932-4127951 | None:intergenic | 25.0% |
| !! | TCAATATTTCAAGTAGCATT+TGG | - | chr2_2:4128250-4128269 | Msa0231810:intron | 25.0% |
| !!! | ATTTTGGAACAAATTTGCAT+CGG | + | chr2_2:4129022-4129041 | None:intergenic | 25.0% |
| ! | TCCAAAATTACATTGTGAAT+AGG | - | chr2_2:4129034-4129053 | Msa0231810:intron | 25.0% |
| ! | CCAAAATTACATTGTGAATA+GGG | - | chr2_2:4129035-4129054 | Msa0231810:intron | 25.0% |
| ! | AAAGCTCAATTTGATACAAT+TGG | + | chr2_2:4129085-4129104 | None:intergenic | 25.0% |
| !!! | TAAAGGTTTTTTCTTGACAA+TGG | - | chr2_2:4129372-4129391 | Msa0231810:intron | 25.0% |
| !!! | AAAGGTTTTTTCTTGACAAT+GGG | - | chr2_2:4129373-4129392 | Msa0231810:intron | 25.0% |
| ! | AAACTAAGTTTACTAAAAGG+TGG | + | chr2_2:4129442-4129461 | None:intergenic | 25.0% |
| ! | AGTTACTAGCAATGTATATT+AGG | - | chr2_2:4129905-4129924 | Msa0231810:intron | 25.0% |
| ! | CATAAGGTAATTGTTAGATA+AGG | - | chr2_2:4130035-4130054 | Msa0231810:intron | 25.0% |
| ! | AAGGTAATTGTTAGTTCATA+AGG | - | chr2_2:4130073-4130092 | Msa0231810:intron | 25.0% |
| !!! | GTGTGCAGATTATTATTTTT+TGG | - | chr2_2:4130293-4130312 | Msa0231810:intron | 25.0% |
| !!! | GCGTAGGATTTTTTTTTTTT+TGG | - | chr2_2:4130325-4130344 | Msa0231810:intron | 25.0% |
| !! | TCCAACTATATGTTGATTAT+AGG | + | chr2_2:4130426-4130445 | None:intergenic | 25.0% |
| ! | ACCTAAAAAAAAAACTTACG+AGG | + | chr2_2:4130610-4130629 | None:intergenic | 25.0% |
| !!! | AATTCATGTGGGTTTTTTGA+TGG | + | chr2_2:4125721-4125740 | None:intergenic | 30.0% |
| !!! | GTTGCTTTTATCTTCTTCTA+TGG | + | chr2_2:4125770-4125789 | None:intergenic | 30.0% |
| AACCACAACAACAATAATCA+AGG | - | chr2_2:4125787-4125806 | Msa0231810:intron | 30.0% | |
| ! | TACCTTGATTATTGTTGTTG+TGG | + | chr2_2:4125792-4125811 | None:intergenic | 30.0% |
| TGCATGTAATGCCTAAAATA+TGG | - | chr2_2:4125918-4125937 | Msa0231810:intron | 30.0% | |
| TATATCAAACTCCTACATGT+TGG | - | chr2_2:4125956-4125975 | Msa0231810:intron | 30.0% | |
| GAAGTGCAAAATGAAGAAAA+AGG | - | chr2_2:4126080-4126099 | Msa0231810:intron | 30.0% | |
| !! | GCTTAGCTTTATATATGTCA+TGG | - | chr2_2:4126192-4126211 | Msa0231810:intron | 30.0% |
| AACAACAACGTAAAATGACA+TGG | + | chr2_2:4126610-4126629 | None:intergenic | 30.0% | |
| ! | TGTTGTTGTTATGTTATCGA+AGG | - | chr2_2:4126623-4126642 | Msa0231810:intron | 30.0% |
| ! | GTTGTTGTTATGTTATCGAA+GGG | - | chr2_2:4126624-4126643 | Msa0231810:intron | 30.0% |
| ! | TTGTTGTTATGTTATCGAAG+GGG | - | chr2_2:4126625-4126644 | Msa0231810:intron | 30.0% |
| CTATTTAAGTAGTATCGCTT+TGG | - | chr2_2:4126702-4126721 | Msa0231810:intron | 30.0% | |
| ! | CTTATCTCTGTTACACATTT+TGG | - | chr2_2:4126762-4126781 | Msa0231810:intron | 30.0% |
| ! | AGGTTTTCTTCATTTTCTTC+TGG | + | chr2_2:4126901-4126920 | None:intergenic | 30.0% |
| AGAATCTAGTATATCACTCT+AGG | - | chr2_2:4127059-4127078 | Msa0231810:intron | 30.0% | |
| ! | GTAAAAGCAATCATTTTCGA+CGG | - | chr2_2:4127129-4127148 | Msa0231810:intron | 30.0% |
| TAGTTATATTGACCAACAAG+TGG | + | chr2_2:4127327-4127346 | None:intergenic | 30.0% | |
| ! | ACTTGTTGGTCAATATAACT+AGG | - | chr2_2:4127326-4127345 | Msa0231810:intron | 30.0% |
| TAACTAGGTAAACATCTAGA+AGG | - | chr2_2:4127341-4127360 | Msa0231810:intron | 30.0% | |
| TAATTGTATTGGAACTTTGG+AGG | - | chr2_2:4127430-4127449 | Msa0231810:intron | 30.0% | |
| AATTGTATTGGAACTTTGGA+GGG | - | chr2_2:4127431-4127450 | Msa0231810:intron | 30.0% | |
| CTTGATTGCAAATTTCAACA+TGG | + | chr2_2:4127687-4127706 | None:intergenic | 30.0% | |
| ! | GAATATTGACCATTCTTTTC+TGG | + | chr2_2:4127894-4127913 | None:intergenic | 30.0% |
| ! | ACCTTGTATGTAGGATTTTT+AGG | - | chr2_2:4128027-4128046 | Msa0231810:intron | 30.0% |
| ! | CCTTGTATGTAGGATTTTTA+GGG | - | chr2_2:4128028-4128047 | Msa0231810:intron | 30.0% |
| !! | CTTGTATGTAGGATTTTTAG+GGG | - | chr2_2:4128029-4128048 | Msa0231810:intron | 30.0% |
| !!! | TGACTTAGTTTTTTCCGAAT+TGG | + | chr2_2:4128062-4128081 | None:intergenic | 30.0% |
| TTGCATACAACACAATCTAA+CGG | + | chr2_2:4128101-4128120 | None:intergenic | 30.0% | |
| TTGTATGCAAGATACATATG+AGG | - | chr2_2:4128111-4128130 | Msa0231810:intron | 30.0% | |
| TCAACATAATAGCATGATCA+AGG | + | chr2_2:4128620-4128639 | None:intergenic | 30.0% | |
| AAGTTGTTCATTATTGAGAG+AGG | - | chr2_2:4128688-4128707 | Msa0231810:intron | 30.0% | |
| ! | GAAACTTTTCATATGGTTGA+GGG | + | chr2_2:4128850-4128869 | None:intergenic | 30.0% |
| ! | TGAAACTTTTCATATGGTTG+AGG | + | chr2_2:4128851-4128870 | None:intergenic | 30.0% |
| ! | CCCTATTCACAATGTAATTT+TGG | + | chr2_2:4129038-4129057 | None:intergenic | 30.0% |
| TACATTGTGAATAGGGTAAA+TGG | - | chr2_2:4129042-4129061 | Msa0231810:intron | 30.0% | |
| ACATTGTGAATAGGGTAAAT+GGG | - | chr2_2:4129043-4129062 | Msa0231810:intron | 30.0% | |
| TTGTTATGTGAAGTTACAAG+AGG | - | chr2_2:4129142-4129161 | Msa0231810:intron | 30.0% | |
| AATGCACAAACAAATTTGGT+GGG | + | chr2_2:4129214-4129233 | None:intergenic | 30.0% | |
| AAATGCACAAACAAATTTGG+TGG | + | chr2_2:4129215-4129234 | None:intergenic | 30.0% | |
| ! | ACCAAATTTGTTTGTGCATT+TGG | - | chr2_2:4129214-4129233 | Msa0231810:intron | 30.0% |
| TCCAAATGCACAAACAAATT+TGG | + | chr2_2:4129218-4129237 | None:intergenic | 30.0% | |
| !!! | GAAGGGTTTTTTGACTTATT+TGG | - | chr2_2:4129274-4129293 | Msa0231810:intron | 30.0% |
| ! | GGAGATATAATTAAAGGTGT+TGG | - | chr2_2:4129402-4129421 | Msa0231810:intron | 30.0% |
| GGGAAACTAAGTTTACTAAA+AGG | + | chr2_2:4129445-4129464 | None:intergenic | 30.0% | |
| TCCCTTATCTTAATTCCATA+AGG | - | chr2_2:4129461-4129480 | Msa0231810:intron | 30.0% | |
| CCCTTATGGAATTAAGATAA+GGG | + | chr2_2:4129465-4129484 | None:intergenic | 30.0% | |
| CCCTTATCTTAATTCCATAA+GGG | - | chr2_2:4129462-4129481 | Msa0231810:intron | 30.0% | |
| ACCCTTATGGAATTAAGATA+AGG | + | chr2_2:4129466-4129485 | None:intergenic | 30.0% | |
| ATCATTCAATTCAAGCATGA+TGG | + | chr2_2:4129515-4129534 | None:intergenic | 30.0% | |
| ! | GCTGAATAAGTTGCTAATTT+TGG | - | chr2_2:4129560-4129579 | Msa0231810:intron | 30.0% |
| TAATTGCCACCTAAATATGA+TGG | + | chr2_2:4129761-4129780 | None:intergenic | 30.0% | |
| TTAACATGGACTTCCATATA+CGG | + | chr2_2:4129880-4129899 | None:intergenic | 30.0% | |
| TATATGGAAGTCCATGTTAA+TGG | - | chr2_2:4129880-4129899 | Msa0231810:intron | 30.0% | |
| CTAGTAACTTACCATTAACA+TGG | + | chr2_2:4129894-4129913 | None:intergenic | 30.0% | |
| AGCAATGTATATTAGGACAA+TGG | - | chr2_2:4129912-4129931 | Msa0231810:intron | 30.0% | |
| AAGGTAATTGTTAGATAAGG+TGG | - | chr2_2:4130038-4130057 | Msa0231810:intron | 30.0% | |
| AAGGTGGTAATTGTTAGATA+AGG | - | chr2_2:4130054-4130073 | Msa0231810:intron | 30.0% | |
| TTTATTTGGCGAAGTTCATA+AGG | - | chr2_2:4130099-4130118 | Msa0231810:intron | 30.0% | |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | - | chr2_2:4130146-4130165 | Msa0231810:intron | 30.0% |
| !!! | TTTTTTTTTTGGTGGAGTCT+TGG | - | chr2_2:4130336-4130355 | Msa0231810:intron | 30.0% |
| !!! | TTTTTTTTTGGTGGAGTCTT+GGG | - | chr2_2:4130337-4130356 | Msa0231810:intron | 30.0% |
| GCCTATAATCAACATATAGT+TGG | - | chr2_2:4130422-4130441 | Msa0231810:intron | 30.0% | |
| !!! | GCCTCGTAAGTTTTTTTTTT+AGG | - | chr2_2:4130606-4130625 | Msa0231810:CDS | 30.0% |
| ACCTCACAACTATTTCAACT+GGG | + | chr2_2:4125747-4125766 | None:intergenic | 35.0% | |
| TCAAGGTAATACTTTACAGG+AGG | - | chr2_2:4125804-4125823 | Msa0231810:intron | 35.0% | |
| GTAGAAAGTCAAGAAAAACG+AGG | - | chr2_2:4125880-4125899 | Msa0231810:intron | 35.0% | |
| AAAGTCAAGAAAAACGAGGA+GGG | - | chr2_2:4125884-4125903 | Msa0231810:intron | 35.0% | |
| ! | TTCATTTTGGACCAACATGT+AGG | + | chr2_2:4125970-4125989 | None:intergenic | 35.0% |
| TAATTGAGTGAACTCTTAGC+TGG | - | chr2_2:4126130-4126149 | Msa0231810:intron | 35.0% | |
| AACAACGTAAAATGACATGG+AGG | + | chr2_2:4126607-4126626 | None:intergenic | 35.0% | |
| !! | TTCTTGTTGTTGAAGGTTGA+TGG | + | chr2_2:4126865-4126884 | None:intergenic | 35.0% |
| !! | TGTAGGATTCTTGTTGTTGA+AGG | + | chr2_2:4126872-4126891 | None:intergenic | 35.0% |
| GCATGAGTAGGAAAAAGTTA+GGG | + | chr2_2:4127003-4127022 | None:intergenic | 35.0% | |
| AGCATGAGTAGGAAAAAGTT+AGG | + | chr2_2:4127004-4127023 | None:intergenic | 35.0% | |
| AAAGCTCAATAAGCATGAGT+AGG | + | chr2_2:4127015-4127034 | None:intergenic | 35.0% | |
| CTAGGCATGATATTACTACA+AGG | - | chr2_2:4127077-4127096 | Msa0231810:intron | 35.0% | |
| ACGACCAAAATCATGACTAT+CGG | + | chr2_2:4127207-4127226 | None:intergenic | 35.0% | |
| TCTCTATTATACGTTCCCTT+TGG | - | chr2_2:4127238-4127257 | Msa0231810:intron | 35.0% | |
| TATGACTAGTACGATCCAAA+GGG | + | chr2_2:4127256-4127275 | None:intergenic | 35.0% | |
| ATATGACTAGTACGATCCAA+AGG | + | chr2_2:4127257-4127276 | None:intergenic | 35.0% | |
| ! | GAGTTCGATCTTTTGATCAA+AGG | + | chr2_2:4127299-4127318 | None:intergenic | 35.0% |
| TAGGTAAACATCTAGAAGGT+AGG | - | chr2_2:4127345-4127364 | Msa0231810:intron | 35.0% | |
| AAGTGCTTACCAGAAAAGAA+TGG | - | chr2_2:4127882-4127901 | Msa0231810:intron | 35.0% | |
| ! | TAGACGGTAAACACTTTTGA+CGG | + | chr2_2:4127916-4127935 | None:intergenic | 35.0% |
| AATTCTCATCTCATAAGACC+TGG | - | chr2_2:4127957-4127976 | Msa0231810:intron | 35.0% | |
| ATTCTCATCTCATAAGACCT+GGG | - | chr2_2:4127958-4127977 | Msa0231810:intron | 35.0% | |
| ! | CATACAAGGTTTTTCACCTT+TGG | + | chr2_2:4128017-4128036 | None:intergenic | 35.0% |
| AGGTGAAAAACCTTGTATGT+AGG | - | chr2_2:4128018-4128037 | Msa0231810:intron | 35.0% | |
| CCCTAAAAATCCTACATACA+AGG | + | chr2_2:4128031-4128050 | None:intergenic | 35.0% | |
| ! | TTAGGGGATGTTTTCCAATT+CGG | - | chr2_2:4128045-4128064 | Msa0231810:intron | 35.0% |
| CGGAAAAAACTAAGTCACAA+AGG | - | chr2_2:4128065-4128084 | Msa0231810:intron | 35.0% | |
| GAATGTCCTTTGTCAATATG+CGG | - | chr2_2:4128154-4128173 | Msa0231810:intron | 35.0% | |
| GTTATTCCGCATATTGACAA+AGG | + | chr2_2:4128163-4128182 | None:intergenic | 35.0% | |
| CAATATGCGGAATAACAATG+CGG | - | chr2_2:4128167-4128186 | Msa0231810:intron | 35.0% | |
| ! | AGTCACTTGTTGCAGAATTA+GGG | + | chr2_2:4128208-4128227 | None:intergenic | 35.0% |
| AAGCAAGAAAGGAAAAACTC+TGG | - | chr2_2:4128375-4128394 | Msa0231810:intron | 35.0% | |
| AGCAAGAAAGGAAAAACTCT+GGG | - | chr2_2:4128376-4128395 | Msa0231810:intron | 35.0% | |
| TTCATTATTGAGAGAGGTAG+CGG | - | chr2_2:4128694-4128713 | Msa0231810:intron | 35.0% | |
| TAGGGTAAATGGGATACTAA+AGG | - | chr2_2:4129053-4129072 | Msa0231810:intron | 35.0% | |
| ! | TCAAATTGAGCTTTGTGTGA+TGG | - | chr2_2:4129091-4129110 | Msa0231810:intron | 35.0% |
| !!! | TACAAGAGGAGATTGGTTTT+TGG | - | chr2_2:4129156-4129175 | Msa0231810:intron | 35.0% |
| ! | AAATTTGGTGGGGGTAATAA+AGG | + | chr2_2:4129203-4129222 | None:intergenic | 35.0% |
| ! | ATGCACAAACAAATTTGGTG+GGG | + | chr2_2:4129213-4129232 | None:intergenic | 35.0% |
| ACTTATTTGGCAGACTGATT+TGG | - | chr2_2:4129287-4129306 | Msa0231810:intron | 35.0% | |
| CGTTGGGGAGATATAATTAA+AGG | - | chr2_2:4129396-4129415 | Msa0231810:intron | 35.0% | |
| ATTCCATTGTTCCTTCTCAT+AGG | + | chr2_2:4129634-4129653 | None:intergenic | 35.0% | |
| !! | TGATGGTGGAATGGAAATTA+TGG | + | chr2_2:4129744-4129763 | None:intergenic | 35.0% |
| TCCATTCCACCATCATATTT+AGG | - | chr2_2:4129749-4129768 | Msa0231810:intron | 35.0% | |
| !! | ACCTAAATATGATGGTGGAA+TGG | + | chr2_2:4129753-4129772 | None:intergenic | 35.0% |
| ATTCCACCATCATATTTAGG+TGG | - | chr2_2:4129752-4129771 | Msa0231810:intron | 35.0% | |
| TATGAGCTATCATCCGTATA+TGG | - | chr2_2:4129864-4129883 | Msa0231810:intron | 35.0% | |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | - | chr2_2:4130147-4130166 | Msa0231810:intron | 35.0% |
| ACCTTGCATATATTATGCGT+AGG | - | chr2_2:4130372-4130391 | Msa0231810:intron | 35.0% | |
| TCCTACGCATAATATATGCA+AGG | + | chr2_2:4130376-4130395 | None:intergenic | 35.0% | |
| ! | TTTTGCATCCATGAGTTTGT+TGG | + | chr2_2:4130453-4130472 | None:intergenic | 35.0% |
| CAACTGGGTCAAATTCATGT+GGG | + | chr2_2:4125732-4125751 | None:intergenic | 40.0% | |
| TCAACTGGGTCAAATTCATG+TGG | + | chr2_2:4125733-4125752 | None:intergenic | 40.0% | |
| ACCCAGTTGAAATAGTTGTG+AGG | - | chr2_2:4125743-4125762 | Msa0231810:intron | 40.0% | |
| GACCTCACAACTATTTCAAC+TGG | + | chr2_2:4125748-4125767 | None:intergenic | 40.0% | |
| GAAAGTCAAGAAAAACGAGG+AGG | - | chr2_2:4125883-4125902 | Msa0231810:intron | 40.0% | |
| AAGTCAAGAAAAACGAGGAG+GGG | - | chr2_2:4125885-4125904 | Msa0231810:intron | 40.0% | |
| ! | GAAGGATGTCACGTTCATTT+TGG | + | chr2_2:4125983-4126002 | None:intergenic | 40.0% |
| AACGTGACATCCTTCTAGAT+TGG | - | chr2_2:4125988-4126007 | Msa0231810:intron | 40.0% | |
| !!! | GCATTTTTGGCCAATCTAGA+AGG | + | chr2_2:4126001-4126020 | None:intergenic | 40.0% |
| AGTCAGTTTATTGGGTCACA+TGG | - | chr2_2:4126447-4126466 | Msa0231810:intron | 40.0% | |
| GTCAGTTTATTGGGTCACAT+GGG | - | chr2_2:4126448-4126467 | Msa0231810:intron | 40.0% | |
| ! | CACTCCGATAGTCATGATTT+TGG | - | chr2_2:4127200-4127219 | Msa0231810:intron | 40.0% |
| ATAAGACCTGGGTATTTGAG+TGG | - | chr2_2:4127969-4127988 | Msa0231810:intron | 40.0% | |
| GAAACCTAAGTTACCTCCAA+AGG | - | chr2_2:4127998-4128017 | Msa0231810:intron | 40.0% | |
| ! | TTCACCTTTGGAGGTAACTT+AGG | + | chr2_2:4128005-4128024 | None:intergenic | 40.0% |
| ! | ACAAGGTTTTTCACCTTTGG+AGG | + | chr2_2:4128014-4128033 | None:intergenic | 40.0% |
| ! | GAGTCACTTGTTGCAGAATT+AGG | + | chr2_2:4128209-4128228 | None:intergenic | 40.0% |
| ! | AAGACTTTGGTAACAAGTGC+TGG | - | chr2_2:4128287-4128306 | Msa0231810:intron | 40.0% |
| GGAAAATAGCAGCAACATTG+TGG | - | chr2_2:4128308-4128327 | Msa0231810:intron | 40.0% | |
| !! | GAAAGCACTTCATTGAGTAC+CGG | - | chr2_2:4128337-4128356 | Msa0231810:intron | 40.0% |
| TTGCGAATCAGAAGCAAGAA+AGG | - | chr2_2:4128364-4128383 | Msa0231810:intron | 40.0% | |
| !! | ACTATCGGTTTCTTCCATCT+AGG | + | chr2_2:4128441-4128460 | None:intergenic | 40.0% |
| AGATGGAAGAAACCGATAGT+TGG | - | chr2_2:4128441-4128460 | Msa0231810:intron | 40.0% | |
| GATGGAAGAAACCGATAGTT+GGG | - | chr2_2:4128442-4128461 | Msa0231810:intron | 40.0% | |
| ATGTGCTTGCCAAAACTATG+CGG | - | chr2_2:4128553-4128572 | Msa0231810:intron | 40.0% | |
| GCGAATGCTCTATGGAAATA+GGG | - | chr2_2:4128583-4128602 | Msa0231810:intron | 40.0% | |
| CGAATGCTCTATGGAAATAG+GGG | - | chr2_2:4128584-4128603 | Msa0231810:intron | 40.0% | |
| GTGAAGTTACAAGAGGAGAT+TGG | - | chr2_2:4129149-4129168 | Msa0231810:intron | 40.0% | |
| ! | TGCACAAACAAATTTGGTGG+GGG | + | chr2_2:4129212-4129231 | None:intergenic | 40.0% |
| ! | TGTTTGTGCATTTGGAGTGT+TGG | - | chr2_2:4129222-4129241 | Msa0231810:intron | 40.0% |
| CAAAAAACCCTTCCACATCT+TGG | + | chr2_2:4129267-4129286 | None:intergenic | 40.0% | |
| ! | TTTTTCTTGACAATGGGCGT+TGG | - | chr2_2:4129379-4129398 | Msa0231810:intron | 40.0% |
| ! | TTTTCTTGACAATGGGCGTT+GGG | - | chr2_2:4129380-4129399 | Msa0231810:intron | 40.0% |
| ! | ATGGTCTTGGTACTGTTGAT+GGG | + | chr2_2:4129496-4129515 | None:intergenic | 40.0% |
| CAATTCAAGCATGATGGTCT+TGG | + | chr2_2:4129509-4129528 | None:intergenic | 40.0% | |
| CGAGTAAAAAGCCTATGAGA+AGG | - | chr2_2:4129620-4129639 | Msa0231810:intron | 40.0% | |
| AAGCCTATGAGAAGGAACAA+TGG | - | chr2_2:4129628-4129647 | Msa0231810:intron | 40.0% | |
| !! | CTCTGCTTTTATGCATTTGC+AGG | + | chr2_2:4129712-4129731 | None:intergenic | 40.0% |
| TTGCCACCTAAATATGATGG+TGG | + | chr2_2:4129758-4129777 | None:intergenic | 40.0% | |
| CACTAACTCACGTTGAATTC+AGG | + | chr2_2:4129790-4129809 | None:intergenic | 40.0% | |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | - | chr2_2:4130148-4130167 | Msa0231810:intron | 40.0% |
| ATGGTAATATGCAAGGTCTG+GGG | + | chr2_2:4130180-4130199 | None:intergenic | 40.0% | |
| CATGGTAATATGCAAGGTCT+GGG | + | chr2_2:4130181-4130200 | None:intergenic | 40.0% | |
| ACAACGCATGGTAATATGCA+AGG | + | chr2_2:4130187-4130206 | None:intergenic | 40.0% | |
| TGAGCTTAGTTCAGATGGTA+GGG | + | chr2_2:4130210-4130229 | None:intergenic | 40.0% | |
| GCTCACGAGGACAATTTATT+TGG | - | chr2_2:4130225-4130244 | Msa0231810:intron | 40.0% | |
| TGCACACATATTAGAACACG+AGG | + | chr2_2:4130280-4130299 | None:intergenic | 40.0% | |
| !! | TTTTTGGTCAGTCTATGCGT+AGG | - | chr2_2:4130309-4130328 | Msa0231810:intron | 40.0% |
| CATAATATATGCAAGGTCCG+GGG | + | chr2_2:4130369-4130388 | None:intergenic | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | + | chr2_2:4130370-4130389 | None:intergenic | 40.0% | |
| CGCATAATATATGCAAGGTC+CGG | + | chr2_2:4130371-4130390 | None:intergenic | 40.0% | |
| TTGGCCAAAAATGCTACCAG+CGG | - | chr2_2:4126007-4126026 | Msa0231810:intron | 45.0% | |
| AGAATCAAAATAGGGTCCGC+TGG | + | chr2_2:4126026-4126045 | None:intergenic | 45.0% | |
| ATGACATGGAGGTCATGAGT+GGG | + | chr2_2:4126596-4126615 | None:intergenic | 45.0% | |
| AATGACATGGAGGTCATGAG+TGG | + | chr2_2:4126597-4126616 | None:intergenic | 45.0% | |
| GTTATGTTATCGAAGGGGCA+AGG | - | chr2_2:4126630-4126649 | Msa0231810:intron | 45.0% | |
| ! | ACTTTTCCAAAGCACACGCT+CGG | + | chr2_2:4127382-4127401 | None:intergenic | 45.0% |
| !! | CGTGTGCTTTGGAAAAGTGA+TGG | - | chr2_2:4127384-4127403 | Msa0231810:intron | 45.0% |
| CAAATGCCACTCAAATACCC+AGG | + | chr2_2:4127978-4127997 | None:intergenic | 45.0% | |
| CTGGGTATTTGAGTGGCATT+TGG | - | chr2_2:4127976-4127995 | Msa0231810:intron | 45.0% | |
| ACAAGTGACTCCTAACCAAG+CGG | - | chr2_2:4128218-4128237 | Msa0231810:intron | 45.0% | |
| TATTGACAATCAACCCCGCT+TGG | + | chr2_2:4128236-4128255 | None:intergenic | 45.0% | |
| AGCAGCAACATTGTGGAATG+CGG | - | chr2_2:4128315-4128334 | Msa0231810:intron | 45.0% | |
| ! | GCTTCTGATTCGCAAGTATC+CGG | + | chr2_2:4128359-4128378 | None:intergenic | 45.0% |
| ! | AATAGCGCTGGAATGCCAAA+TGG | - | chr2_2:4128411-4128430 | Msa0231810:intron | 45.0% |
| ! | ATAGCGCTGGAATGCCAAAT+GGG | - | chr2_2:4128412-4128431 | Msa0231810:intron | 45.0% |
| GGACATTGGGATGCGTATAT+AGG | - | chr2_2:4128515-4128534 | Msa0231810:intron | 45.0% | |
| ! | GCGTGAAAACCGCATAGTTT+TGG | + | chr2_2:4128565-4128584 | None:intergenic | 45.0% |
| ! | GTTTTCACGCGAATGCTCTA+TGG | - | chr2_2:4128575-4128594 | Msa0231810:intron | 45.0% |
| CGCGAATGCTCTATGGAAAT+AGG | - | chr2_2:4128582-4128601 | Msa0231810:intron | 45.0% | |
| ! | TATGGAAATAGGGGAAGCGT+TGG | - | chr2_2:4128593-4128612 | Msa0231810:intron | 45.0% |
| ATGGATGCCAAGATGTGGAA+GGG | - | chr2_2:4129257-4129276 | Msa0231810:intron | 45.0% | |
| ! | TTTCTTGACAATGGGCGTTG+GGG | - | chr2_2:4129381-4129400 | Msa0231810:intron | 45.0% |
| !! | CTTGGTACTGTTGATGGGTT+TGG | + | chr2_2:4129491-4129510 | None:intergenic | 45.0% |
| ! | GATGGTCTTGGTACTGTTGA+TGG | + | chr2_2:4129497-4129516 | None:intergenic | 45.0% |
| GCATGGTAATATGCAAGGTC+TGG | + | chr2_2:4130182-4130201 | None:intergenic | 45.0% | |
| GTGAGCTTAGTTCAGATGGT+AGG | + | chr2_2:4130211-4130230 | None:intergenic | 45.0% | |
| !! | TGGAAGCACCAACAAACTCA+TGG | - | chr2_2:4130442-4130461 | Msa0231810:CDS | 45.0% |
| ! | CGAACTCTGATGCCACTTGT+TGG | - | chr2_2:4127312-4127331 | Msa0231810:intron | 50.0% |
| TAGATTCCGAGCGTGTGCTT+TGG | - | chr2_2:4127373-4127392 | Msa0231810:intron | 50.0% | |
| CAAGTGACTCCTAACCAAGC+GGG | - | chr2_2:4128219-4128238 | Msa0231810:intron | 50.0% | |
| AAGTGACTCCTAACCAAGCG+GGG | - | chr2_2:4128220-4128239 | Msa0231810:intron | 50.0% | |
| ACAATCAACCCCGCTTGGTT+AGG | + | chr2_2:4128231-4128250 | None:intergenic | 50.0% | |
| CACACGAACAACAATAGCGC+TGG | - | chr2_2:4128399-4128418 | Msa0231810:intron | 50.0% | |
| ! | TAGCGCTGGAATGCCAAATG+GGG | - | chr2_2:4128413-4128432 | Msa0231810:intron | 50.0% |
| TTCCATCTAGGCACCCCATT+TGG | + | chr2_2:4128429-4128448 | None:intergenic | 50.0% | |
| CACTCGAGTCTCCCAACTAT+CGG | + | chr2_2:4128456-4128475 | None:intergenic | 50.0% | |
| TGGGAGACTCGAGTGCAATA+TGG | - | chr2_2:4128461-4128480 | Msa0231810:intron | 50.0% | |
| AATGTCCATCTTGTGGAGGG+TGG | + | chr2_2:4128502-4128521 | None:intergenic | 50.0% | |
| ACCCTCCACAAGATGGACAT+TGG | - | chr2_2:4128501-4128520 | Msa0231810:intron | 50.0% | |
| CCCAATGTCCATCTTGTGGA+GGG | + | chr2_2:4128505-4128524 | None:intergenic | 50.0% | |
| CCCTCCACAAGATGGACATT+GGG | - | chr2_2:4128502-4128521 | Msa0231810:intron | 50.0% | |
| TCCCAATGTCCATCTTGTGG+AGG | + | chr2_2:4128506-4128525 | None:intergenic | 50.0% | |
| GCATCCCAATGTCCATCTTG+TGG | + | chr2_2:4128509-4128528 | None:intergenic | 50.0% | |
| GTGTTGGAGTAGAGAAGCGA+TGG | - | chr2_2:4129238-4129257 | Msa0231810:intron | 50.0% | |
| AAGCGATGGATGCCAAGATG+TGG | - | chr2_2:4129252-4129271 | Msa0231810:intron | 50.0% | |
| GATGGATGCCAAGATGTGGA+AGG | - | chr2_2:4129256-4129275 | Msa0231810:intron | 50.0% | |
| ! | GATGGGTTTGGCAACCCTTA+TGG | + | chr2_2:4129479-4129498 | None:intergenic | 50.0% |
| CCTCGTGAGCTTAGTTCAGA+TGG | + | chr2_2:4130215-4130234 | None:intergenic | 50.0% | |
| CCATCTGAACTAAGCTCACG+AGG | - | chr2_2:4130212-4130231 | Msa0231810:intron | 50.0% | |
| ! | GGGTCCGCTGGTAGCATTTT+TGG | + | chr2_2:4126014-4126033 | None:intergenic | 55.0% |
| ATTGGGTCACATGGGACGCA+AGG | - | chr2_2:4126456-4126475 | Msa0231810:intron | 55.0% | |
| TTGGGTCACATGGGACGCAA+GGG | - | chr2_2:4126457-4126476 | Msa0231810:intron | 55.0% | |
| ! | TGCCAAATGGGGTGCCTAGA+TGG | - | chr2_2:4128424-4128443 | Msa0231810:intron | 55.0% |
| ! | AAGGTCTGGGGTTCAAACCC+CGG | + | chr2_2:4130168-4130187 | None:intergenic | 55.0% |
| CAGATGGTAGGGACAACGCA+TGG | + | chr2_2:4130199-4130218 | None:intergenic | 55.0% | |
| CTCGTCCACCCTCCACAAGA+TGG | - | chr2_2:4128494-4128513 | Msa0231810:intron | 60.0% | |
| GGAGTCTTGGGTTCGAACCC+CGG | - | chr2_2:4130349-4130368 | Msa0231810:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 4125694 | 4130648 | 4125694 | ID=Msa0231810;Name=Msa0231810 |
| chr2_2 | mRNA | 4125694 | 4130648 | 4125694 | ID=Msa0231810-mRNA-1;Parent=Msa0231810;Name=Msa0231810-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|0.5|0|0|2|0|72 |
| chr2_2 | exon | 4130436 | 4130648 | 4130436 | ID=Msa0231810-mRNA-1:exon:1718;Parent=Msa0231810-mRNA-1 |
| chr2_2 | exon | 4125694 | 4125699 | 4125694 | ID=Msa0231810-mRNA-1:exon:1717;Parent=Msa0231810-mRNA-1 |
| chr2_2 | CDS | 4130436 | 4130648 | 4130436 | ID=Msa0231810-mRNA-1:cds;Parent=Msa0231810-mRNA-1 |
| chr2_2 | CDS | 4125694 | 4125699 | 4125694 | ID=Msa0231810-mRNA-1:cds;Parent=Msa0231810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
