AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0231830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231830 MtrunA17_Chr2g0278561 95.960 396 11 1 1 396 3 393 0.0 776
Msa0231830 MtrunA17_Chr2g0278541 60.638 376 140 3 7 374 6 381 1.14e-161 460
Msa0231830 MtrunA17_Chr2g0278551 54.613 401 173 4 4 404 3 394 1.28e-152 437
Msa0231830 MtrunA17_Chr2g0278021 76.868 281 59 3 127 401 1 281 2.98e-150 427
Msa0231830 MtrunA17_Chr2g0290611 56.868 364 149 3 3 366 2 357 2.09e-145 417
Msa0231830 MtrunA17_Chr4g0050941 55.291 378 162 4 7 379 6 381 6.71e-133 387
Msa0231830 MtrunA17_Chr4g0050891 54.518 332 147 2 1 329 1 331 1.69e-130 380
Msa0231830 MtrunA17_Chr2g0332001 51.093 366 171 4 9 372 34 393 9.26e-130 379
Msa0231830 MtrunA17_Chr4g0051021 51.194 377 176 4 4 373 3 378 2.01e-128 375
Msa0231830 MtrunA17_Chr4g0050881 51.796 334 160 1 12 345 8 340 5.07e-119 350
Msa0231830 MtrunA17_Chr4g0050931 48.424 349 137 3 3 347 2 311 7.71e-114 335
Msa0231830 MtrunA17_Chr4g0051001 49.020 306 156 0 7 312 25 330 1.67e-100 302
Msa0231830 MtrunA17_Chr2g0284261 39.222 334 196 3 13 345 8 335 1.28e-82 257
Msa0231830 MtrunA17_Chr7g0255561 38.824 340 202 3 1 336 1 338 4.63e-80 252
Msa0231830 MtrunA17_Chr7g0255581 38.824 340 202 3 1 336 1 338 4.63e-80 252
Msa0231830 MtrunA17_Chr7g0271561 40.367 327 191 2 14 336 8 334 1.39e-79 250
Msa0231830 MtrunA17_Chr8g0354121 37.831 378 222 5 7 376 7 379 1.45e-79 250
Msa0231830 MtrunA17_Chr3g0081421 39.645 338 199 4 13 347 17 352 5.08e-78 246
Msa0231830 MtrunA17_Chr3g0081511 36.031 383 228 5 13 394 17 383 9.46e-77 243
Msa0231830 MtrunA17_Chr1g0164831 39.210 329 188 3 13 337 3 323 1.77e-76 241
Msa0231830 MtrunA17_Chr3g0114691 36.104 385 225 6 2 369 9 389 8.19e-72 230
Msa0231830 MtrunA17_Chr1g0160171 38.261 345 203 2 9 346 12 353 1.59e-71 229
Msa0231830 MtrunA17_Chr7g0263101 36.994 346 209 3 10 349 10 352 3.25e-70 226
Msa0231830 MtrunA17_Chr6g0463971 37.101 345 210 3 1 339 1 344 5.11e-69 222
Msa0231830 MtrunA17_Chr3g0114731 34.545 385 240 4 13 395 18 392 7.56e-69 223
Msa0231830 MtrunA17_Chr2g0278031 80.952 126 21 1 4 126 2 127 2.64e-68 212
Msa0231830 MtrunA17_Chr1g0160111 35.043 351 219 3 22 369 16 360 3.04e-68 221
Msa0231830 MtrunA17_Chr8g0334761 33.978 362 228 4 6 362 3 358 1.73e-67 218
Msa0231830 MtrunA17_Chr3g0129571 32.486 354 232 3 12 360 6 357 5.37e-66 214
Msa0231830 MtrunA17_Chr6g0483401 36.111 324 197 3 22 340 19 337 1.49e-65 213
Msa0231830 MtrunA17_Chr3g0129601 36.686 338 210 3 2 338 20 354 1.31e-64 211
Msa0231830 MtrunA17_Chr3g0129591 35.736 333 211 2 12 341 4 336 6.70e-64 209
Msa0231830 MtrunA17_Chr1g0186601 33.333 342 220 4 10 348 13 349 1.53e-63 207
Msa0231830 MtrunA17_Chr1g0182291 35.380 342 213 4 7 346 9 344 3.05e-63 207
Msa0231830 MtrunA17_Chr1g0155761 35.342 365 219 4 2 349 10 374 9.49e-63 207
Msa0231830 MtrunA17_Chr1g0186611 35.294 340 212 4 4 340 7 341 2.10e-62 205
Msa0231830 MtrunA17_Chr3g0142131 35.260 346 214 2 6 341 13 358 5.11e-62 205
Msa0231830 MtrunA17_Chr1g0186641 34.328 335 214 3 1 334 1 330 7.96e-62 203
Msa0231830 MtrunA17_Chr1g0186571 33.616 354 227 5 1 351 1 349 1.27e-61 203
Msa0231830 MtrunA17_Chr8g0383731 38.415 328 199 2 14 338 6 333 2.02e-61 202
Msa0231830 MtrunA17_Chr4g0073241 33.787 367 226 6 9 367 4 361 7.90e-60 199
Msa0231830 MtrunA17_Chr1g0186561 35.588 340 208 4 7 341 10 343 1.32e-59 197
Msa0231830 MtrunA17_Chr1g0171301 34.218 339 215 4 8 341 11 346 1.33e-59 197
Msa0231830 MtrunA17_Chr2g0310441 32.132 333 216 3 14 340 11 339 2.00e-59 197
Msa0231830 MtrunA17_Chr1g0160181 34.043 376 240 5 13 386 18 387 2.85e-59 197
Msa0231830 MtrunA17_Chr5g0428881 30.966 352 225 1 16 349 21 372 1.00e-58 196
Msa0231830 MtrunA17_Chr1g0184221 31.099 373 230 4 8 363 11 373 1.85e-58 195
Msa0231830 MtrunA17_Chr3g0129581 34.925 335 211 4 12 341 4 336 7.24e-57 191
Msa0231830 MtrunA17_Chr3g0114701 34.584 373 241 3 13 384 9 379 5.17e-55 186
Msa0231830 MtrunA17_Chr3g0126101 33.436 326 211 3 14 339 7 326 2.08e-54 184
Msa0231830 MtrunA17_Chr5g0441761 31.889 323 212 2 18 340 19 333 2.90e-54 183
Msa0231830 MtrunA17_Chr8g0334751 33.048 351 208 6 14 351 12 348 6.44e-54 183
Msa0231830 MtrunA17_Chr4g0059311 32.822 326 215 3 14 338 12 334 2.59e-53 181
Msa0231830 MtrunA17_Chr8g0334771 30.446 381 247 4 6 382 3 369 5.29e-53 181
Msa0231830 MtrunA17_Chr3g0114711 30.423 378 224 4 2 343 3 377 7.84e-52 178
Msa0231830 MtrunA17_Chr3g0084091 31.579 304 175 3 89 368 6 300 1.78e-49 169
Msa0231830 MtrunA17_Chr5g0413961 32.219 329 208 4 12 336 13 330 2.75e-49 170
Msa0231830 MtrunA17_Chr1g0150151 34.877 324 205 5 14 334 12 332 2.86e-49 171
Msa0231830 MtrunA17_Chr6g0451211 32.143 336 207 5 31 351 30 359 2.11e-48 168
Msa0231830 MtrunA17_Chr5g0429001 30.935 278 190 1 65 340 3 280 5.22e-47 164
Msa0231830 MtrunA17_Chr1g0211801 35.968 253 152 3 13 262 11 256 7.09e-47 162
Msa0231830 MtrunA17_Chr5g0413921 32.012 328 218 4 8 334 2 325 2.19e-45 160
Msa0231830 MtrunA17_Chr5g0413941 30.060 336 226 4 8 340 2 331 2.44e-45 160
Msa0231830 MtrunA17_Chr5g0407991 32.033 359 216 7 18 351 14 369 2.02e-44 158
Msa0231830 MtrunA17_Chr5g0407971 30.725 345 222 4 13 343 11 352 2.08e-44 158
Msa0231830 MtrunA17_Chr5g0413951 31.045 335 206 6 11 334 5 325 1.69e-43 155
Msa0231830 MtrunA17_Chr7g0227921 29.363 361 236 6 10 364 8 355 1.92e-42 152
Msa0231830 MtrunA17_Chr5g0408031 29.973 377 239 7 10 370 7 374 3.62e-40 147
Msa0231830 MtrunA17_Chr8g0369841 28.024 339 229 3 18 343 14 350 5.47e-40 146
Msa0231830 MtrunA17_Chr6g0451201 33.657 309 197 5 31 339 30 330 6.39e-40 145
Msa0231830 MtrunA17_Chr6g0451251 32.907 313 197 7 31 339 30 333 1.69e-39 145
Msa0231830 MtrunA17_Chr6g0451171 31.884 345 218 9 30 368 29 362 1.93e-39 144
Msa0231830 MtrunA17_Chr5g0413931 30.357 336 225 5 15 346 8 338 9.37e-39 142
Msa0231830 MtrunA17_Chr5g0408001 30.973 339 215 5 13 336 10 344 1.39e-38 143
Msa0231830 MtrunA17_Chr5g0408041 28.457 376 242 7 12 371 10 374 2.45e-38 142
Msa0231830 MtrunA17_Chr6g0451261 29.114 316 217 4 1 315 1 310 3.63e-38 147
Msa0231830 MtrunA17_Chr4g0050921 58.654 104 43 0 212 315 1 104 1.54e-37 132
Msa0231830 MtrunA17_Chr3g0126091 25.382 327 230 4 14 333 12 331 1.86e-32 125
Msa0231830 MtrunA17_Chr4g0050911 50.382 131 59 2 88 212 6 136 6.80e-32 119
Msa0231830 MtrunA17_Chr1g0177221 31.076 251 168 3 13 262 18 264 5.01e-31 119
Msa0231830 MtrunA17_Chr5g0404811 31.602 231 151 3 121 348 1 227 8.52e-31 118
Msa0231830 MtrunA17_Chr8g0334711 35.211 213 111 5 9 209 6 203 9.01e-31 117
Msa0231830 MtrunA17_Chr6g0451191 33.488 215 133 5 127 339 1 207 1.33e-30 117
Msa0231830 MtrunA17_Chr5g0399281 27.536 345 224 8 18 351 13 342 1.45e-26 109
Msa0231830 MtrunA17_Chr8g0334721 37.008 127 79 1 230 355 5 131 2.61e-23 95.5
Msa0231830 MtrunA17_Chr4g0056081 25.697 323 230 5 18 334 19 337 2.61e-23 100
Msa0231830 MtrunA17_Chr5g0404801 41.667 108 63 0 18 125 12 119 9.87e-20 84.7
Msa0231830 MtrunA17_Chr8g0334731 31.220 205 103 6 14 209 12 187 4.72e-18 82.0
Msa0231830 MtrunA17_Chr1g0177231 48.649 74 38 0 263 336 29 102 2.33e-17 78.2
Msa0231830 MtrunA17_Chr1g0211811 44.000 75 42 0 264 338 1 75 3.42e-17 76.3
Msa0231830 MtrunA17_Chr4g0050901 55.000 60 27 0 7 66 6 65 4.76e-17 75.1
Msa0231830 MtrunA17_Chr1g0172891 51.562 64 31 0 273 336 17 80 1.65e-16 75.1
Msa0231830 MtrunA17_Chr1g0182261 34.375 128 81 3 214 338 87 214 4.07e-15 74.3
Msa0231830 MtrunA17_Chr6g0451241 36.082 97 61 1 273 368 18 114 6.56e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231830 AT1G68170.2 45.672 335 182 0 3 337 2 336 1.80e-96 293
Msa0231830 AT1G68170.1 46.626 326 174 0 12 337 1 326 2.10e-95 290
Msa0231830 AT1G25270.1 43.391 348 184 4 12 351 1 343 3.33e-93 285
Msa0231830 AT5G07050.1 40.785 331 183 4 13 334 17 343 2.02e-77 246
Msa0231830 AT1G09380.1 40.625 320 187 2 14 331 8 326 5.36e-76 241
Msa0231830 AT4G01440.1 36.620 355 217 3 14 367 10 357 4.36e-74 236
Msa0231830 AT5G13670.1 37.705 366 208 6 13 372 7 358 3.54e-73 234
Msa0231830 AT3G30340.1 36.765 340 208 3 13 351 10 343 1.72e-71 229
Msa0231830 AT2G37460.1 32.924 407 235 6 7 409 8 380 4.77e-71 228
Msa0231830 AT4G08290.1 36.639 363 224 3 12 371 11 370 2.80e-70 226
Msa0231830 AT4G08300.1 37.963 324 199 2 12 334 9 331 3.23e-70 226
Msa0231830 AT2G39510.1 36.364 363 216 4 13 369 7 360 3.32e-69 223
Msa0231830 AT3G18200.2 35.695 367 221 7 8 372 29 382 5.14e-68 221
Msa0231830 AT4G01440.3 37.954 303 183 2 14 315 10 308 4.07e-66 214
Msa0231830 AT1G21890.1 34.819 359 221 3 7 354 4 360 1.75e-65 214
Msa0231830 AT2G40900.1 33.149 362 229 2 10 366 7 360 2.36e-65 214
Msa0231830 AT1G44800.1 33.777 376 230 3 9 382 6 364 2.81e-65 213
Msa0231830 AT5G64700.1 36.747 332 206 1 13 340 7 338 9.37e-65 211
Msa0231830 AT1G11450.3 36.628 344 213 3 7 349 9 348 2.50e-64 210
Msa0231830 AT3G53210.1 34.444 360 227 3 18 377 14 364 5.26e-64 210
Msa0231830 AT4G01430.1 33.962 371 225 4 14 382 9 361 1.05e-63 209
Msa0231830 AT1G01070.1 33.978 362 217 4 8 353 10 365 1.77e-63 208
Msa0231830 AT1G11460.1 37.037 324 200 3 14 336 16 336 3.59e-63 206
Msa0231830 AT1G75500.1 36.950 341 207 4 2 336 8 346 7.00e-63 207
Msa0231830 AT1G75500.2 36.950 341 207 4 2 336 8 346 7.00e-63 207
Msa0231830 AT3G56620.1 36.760 321 192 4 13 331 10 321 2.56e-61 203
Msa0231830 AT1G43650.1 36.000 325 196 3 13 334 6 321 5.26e-60 199
Msa0231830 AT4G30420.2 30.576 399 251 8 9 402 4 381 1.37e-59 199
Msa0231830 AT4G30420.1 30.769 390 244 8 18 402 3 371 1.42e-57 193
Msa0231830 AT1G11450.5 36.808 307 189 3 44 349 2 304 1.94e-57 191
Msa0231830 AT1G11450.2 37.075 294 180 3 57 349 8 297 7.24e-55 184
Msa0231830 AT4G28040.1 31.856 361 228 5 13 370 7 352 4.47e-54 184
Msa0231830 AT4G28040.5 31.856 361 228 5 13 370 7 352 4.47e-54 184
Msa0231830 AT4G28040.3 31.856 361 228 5 13 370 7 352 4.47e-54 184
Msa0231830 AT4G28040.4 31.856 361 228 5 13 370 7 352 4.47e-54 184
Msa0231830 AT4G28040.2 31.856 361 228 5 13 370 7 352 4.47e-54 184
Msa0231830 AT1G11450.4 36.482 307 190 3 7 312 9 311 4.61e-54 182
Msa0231830 AT1G21890.2 34.295 312 199 1 7 312 4 315 8.66e-53 180
Msa0231830 AT4G01430.2 36.545 301 188 3 14 312 9 308 1.68e-52 178
Msa0231830 AT4G01440.4 38.039 255 153 2 14 267 10 260 5.99e-52 175
Msa0231830 AT1G01070.2 33.876 307 181 4 63 353 18 318 2.97e-50 172
Msa0231830 AT5G40240.1 32.647 340 217 6 14 347 20 353 3.17e-50 174
Msa0231830 AT5G40240.3 32.647 340 217 6 14 347 20 353 3.17e-50 174
Msa0231830 AT5G40240.2 32.647 340 217 6 14 347 34 367 3.27e-50 174
Msa0231830 AT4G01450.2 35.093 322 202 2 14 335 10 324 6.27e-50 172
Msa0231830 AT2G37450.2 33.951 324 187 4 14 336 9 306 4.89e-49 170
Msa0231830 AT5G40230.1 32.000 350 217 5 14 349 21 363 2.97e-48 169
Msa0231830 AT4G01450.1 34.114 299 190 2 14 312 10 301 3.95e-48 167
Msa0231830 AT4G01440.5 34.766 256 159 3 113 367 1 249 1.13e-47 164
Msa0231830 AT4G01440.2 34.766 256 159 3 113 367 1 249 1.13e-47 164
Msa0231830 AT3G53210.2 33.564 289 183 3 89 377 28 307 9.75e-47 163
Msa0231830 AT3G28050.1 28.718 390 238 8 14 397 12 367 2.02e-46 164
Msa0231830 AT3G18200.1 35.227 264 158 5 110 372 1 252 5.87e-46 159
Msa0231830 AT3G30340.2 35.857 251 157 2 13 262 10 257 1.25e-45 159
Msa0231830 AT4G08290.2 36.400 250 158 1 12 261 11 259 5.08e-45 157
Msa0231830 AT1G11450.1 36.680 259 159 3 92 349 2 256 1.29e-44 155
Msa0231830 AT3G53210.3 35.622 233 148 1 18 250 14 244 6.20e-44 154
Msa0231830 AT5G45370.1 29.586 338 222 3 18 352 24 348 7.59e-44 156
Msa0231830 AT4G15540.1 29.942 344 219 4 14 349 17 346 2.88e-43 155
Msa0231830 AT4G15540.2 29.942 344 219 4 14 349 17 346 2.88e-43 155
Msa0231830 AT5G45370.2 28.286 350 235 4 18 352 24 372 8.75e-42 152
Msa0231830 AT5G45370.4 28.286 350 235 4 18 352 24 372 8.75e-42 152
Msa0231830 AT5G64700.2 34.387 253 162 1 13 261 7 259 2.41e-41 147
Msa0231830 AT4G01450.4 34.538 249 156 2 14 262 10 251 3.25e-41 147
Msa0231830 AT5G40210.1 33.022 321 192 8 18 336 17 316 2.76e-40 147
Msa0231830 AT3G28100.1 29.305 331 229 5 18 346 18 345 1.31e-37 140
Msa0231830 AT4G01450.3 35.321 218 134 2 14 231 10 220 2.39e-37 136
Msa0231830 AT3G28070.1 30.395 329 216 8 18 341 21 341 3.45e-37 139
Msa0231830 AT1G70260.1 26.727 333 239 2 12 339 10 342 6.31e-37 138
Msa0231830 AT3G45870.1 28.834 326 211 6 18 329 16 334 2.87e-36 137
Msa0231830 AT2G37450.3 36.017 236 145 3 102 336 4 234 2.94e-36 134
Msa0231830 AT1G43650.2 34.524 252 153 3 13 261 6 248 3.20e-36 134
Msa0231830 AT3G28070.2 33.607 244 151 6 102 341 13 249 7.70e-35 130
Msa0231830 AT4G19185.1 28.783 337 215 6 18 336 25 354 2.44e-34 132
Msa0231830 AT3G28080.5 31.933 238 159 3 102 338 13 248 2.81e-34 129
Msa0231830 AT3G28080.7 31.933 238 159 3 102 338 13 248 2.81e-34 129
Msa0231830 AT3G28080.8 31.933 238 159 3 102 338 13 248 2.81e-34 129
Msa0231830 AT3G28080.6 31.933 238 159 3 102 338 13 248 2.81e-34 129
Msa0231830 AT3G28080.1 29.102 323 224 5 18 338 18 337 1.64e-33 129
Msa0231830 AT3G28080.2 31.933 238 159 3 102 338 94 329 4.81e-33 127
Msa0231830 AT4G01430.3 32.099 243 146 3 142 383 1 225 5.34e-32 121
Msa0231830 AT4G24980.1 28.205 312 145 6 28 334 1 238 1.56e-30 119
Msa0231830 AT1G60050.1 25.788 349 249 5 14 354 13 359 2.76e-29 117
Msa0231830 AT5G47470.2 28.571 322 214 6 18 334 62 372 2.91e-29 118
Msa0231830 AT5G47470.3 28.571 322 214 6 18 334 62 372 3.20e-29 117
Msa0231830 AT5G47470.1 28.571 322 214 6 18 334 34 344 5.66e-29 116
Msa0231830 AT3G45870.8 27.508 309 203 6 18 312 16 317 7.19e-29 115
Msa0231830 AT3G28130.5 28.340 247 174 3 102 347 15 259 2.45e-28 112
Msa0231830 AT3G28130.1 28.340 247 174 3 102 347 15 259 2.45e-28 112
Msa0231830 AT3G28130.2 28.340 247 174 3 102 347 101 345 2.21e-27 112
Msa0231830 AT5G45370.6 26.766 269 181 4 99 352 3 270 4.85e-27 109
Msa0231830 AT5G45370.5 26.766 269 181 4 99 352 3 270 4.85e-27 109
Msa0231830 AT4G19185.2 28.358 268 170 5 84 336 16 276 9.42e-27 109
Msa0231830 AT3G28070.5 31.963 219 138 6 127 341 1 212 9.79e-27 107
Msa0231830 AT2G37450.1 33.971 209 132 3 127 334 62 265 1.23e-26 108
Msa0231830 AT3G28070.3 28.333 300 204 7 18 312 21 314 8.75e-26 107
Msa0231830 AT3G28080.9 30.047 213 146 3 127 338 1 211 8.97e-26 104
Msa0231830 AT3G45870.9 28.571 252 160 5 13 250 11 256 8.51e-23 97.8
Msa0231830 AT4G16620.1 25.439 342 234 7 22 351 20 352 1.75e-22 98.2
Msa0231830 AT3G28130.3 26.577 222 160 3 127 347 1 220 8.77e-21 90.9
Msa0231830 AT3G45870.5 27.311 238 155 5 103 329 29 259 1.89e-19 89.0
Msa0231830 AT5G45370.3 25.000 240 164 4 128 352 74 312 2.99e-19 88.6
Msa0231830 AT3G28080.3 25.466 322 183 6 18 338 18 283 1.57e-18 85.9
Msa0231830 AT3G28100.3 25.820 244 177 4 18 259 18 259 2.07e-16 79.3
Msa0231830 AT4G16620.4 26.054 261 173 6 102 351 4 255 3.18e-16 78.6
Msa0231830 AT4G16620.2 26.054 261 173 6 102 351 4 255 3.18e-16 78.6
Msa0231830 AT3G45870.2 28.058 139 99 1 191 329 46 183 7.08e-14 71.2
Msa0231830 AT4G16620.3 24.312 218 157 3 22 237 20 231 6.20e-13 69.3
Msa0231830 AT3G45870.6 25.339 221 147 5 103 312 29 242 1.16e-12 68.2
Msa0231830 AT3G45870.7 25.339 221 147 5 103 312 29 242 1.16e-12 68.2
Msa0231830 AT3G28100.2 28.667 150 105 2 18 166 18 166 1.36e-12 67.8
Msa0231830 AT3G28080.4 36.486 74 47 0 265 338 121 194 2.37e-12 66.2

Find 102 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACTGTGGCTTATTATTC+AGG 0.189563 2_2:-4153491 Msa0231830:intron
GAAGAACAAAATGAAGAAAA+AGG 0.197855 2_2:-4152042 Msa0231830:three_prime_UTR
GATGATGCAAAAGATTTAAA+TGG 0.200514 2_2:+4153596 None:intergenic
GAAGGATGTCACGTTCATTT+TGG 0.209146 2_2:+4152141 None:intergenic
TAAACGATGGCATGAGTTTA+AGG 0.216977 2_2:-4155279 Msa0231830:CDS
TCCACTGCTAATACCATTTC+GGG 0.219336 2_2:-4153547 Msa0231830:CDS
GGATTTGAGTCAGTGGAAAT+TGG 0.225887 2_2:-4153270 Msa0231830:CDS
TTTGAAGCCAACGTTGTTAA+TGG 0.249888 2_2:-4155353 Msa0231830:CDS
CTCCACTGCTAATACCATTT+CGG 0.255958 2_2:-4153548 Msa0231830:CDS
GTGCAGGGTATAGTGGTTTC+AGG 0.274984 2_2:-4152802 Msa0231830:intron
GCTTAGATTTATATCTTTCA+TGG 0.281116 2_2:-4151930 Msa0231830:three_prime_UTR
GCCACCATGAGAAGCATTAA+AGG 0.303653 2_2:+4152712 None:intergenic
TGCATGTAATGCCTAAAATA+TGG 0.309367 2_2:-4152203 Msa0231830:exon
AATGCTTCTCATGGTGGCTT+TGG 0.326565 2_2:-4152707 Msa0231830:CDS
CTTCTCATGGTGGCTTTGGC+TGG 0.336230 2_2:-4152703 Msa0231830:CDS
TTTATCATGGCCGTTTCCTT+AGG 0.340185 2_2:-4154166 Msa0231830:CDS
GCAGGGAAGGCAAAGATATT+AGG 0.341417 2_2:-4153691 Msa0231830:CDS
GTGTAGTTTCTCATTCAAAA+TGG 0.353109 2_2:+4152675 None:intergenic
GACCTCACAACTATTTCAAC+TGG 0.356060 2_2:+4152376 None:intergenic
ATGTACTTTGCATATATTGT+AGG 0.362990 2_2:+4151860 None:intergenic
ATGGTATTGACATTCGTTAA+AGG 0.372757 2_2:-4153643 Msa0231830:CDS
TAAGGAAACGGCCATGATAA+AGG 0.377584 2_2:+4154168 None:intergenic
GATTTGAGTCAGTGGAAATT+GGG 0.381331 2_2:-4153269 Msa0231830:CDS
TAATCAAGGTAATACTTTAC+AGG 0.391706 2_2:-4152320 Msa0231830:CDS
GCCAACGTTGTTAATGGTTA+TGG 0.393643 2_2:-4155347 Msa0231830:CDS
GTGGCTTATATGCGGTTGTA+TGG 0.403530 2_2:-4152465 Msa0231830:CDS
AAGATATTAGGTACACTAAC+AGG 0.409574 2_2:-4153679 Msa0231830:CDS
TAAAGGTTACAGCTGGTATA+AGG 0.410418 2_2:+4154185 None:intergenic
TAAAGGTGTTGAAATTAAGA+TGG 0.412574 2_2:-4153626 Msa0231830:CDS
TTGAATTGTGCAGGGTATAG+TGG 0.415256 2_2:-4152809 Msa0231830:intron
TTCGGGTTCTCTGTGTGCCT+TGG 0.416848 2_2:-4153530 Msa0231830:CDS
TATATGCAAAGTACATCTTC+AGG 0.417199 2_2:-4151853 Msa0231830:three_prime_UTR
TAATACTTTACAGGTGGTTA+AGG 0.419065 2_2:-4152311 Msa0231830:CDS
CTTTCAACAATGAAAGCAAT+TGG 0.424577 2_2:+4155211 None:intergenic
CCACCATGAGAAGCATTAAA+GGG 0.434152 2_2:+4152713 None:intergenic
TTAGGTACACTAACAGGAAT+TGG 0.435923 2_2:-4153673 Msa0231830:CDS
TACCTTGATTATTGTTGTTG+TGG 0.442004 2_2:+4152332 None:intergenic
TTGCATCATCAAAATGGTGT+TGG 0.456326 2_2:-4153583 Msa0231830:CDS
TACCCCTTTAATGCTTCTCA+TGG 0.459947 2_2:-4152716 Msa0231830:CDS
TGAGTCAGTGGAAATTGGGT+TGG 0.467607 2_2:-4153265 Msa0231830:CDS
TTATCATGGCCGTTTCCTTA+GGG 0.467781 2_2:-4154165 Msa0231830:intron
TAATTGAGTGACCACTTAGC+TGG 0.476526 2_2:-4151992 Msa0231830:three_prime_UTR
CAATGGTAGCTGTAATTTCA+TGG 0.477017 2_2:-4152777 Msa0231830:CDS
CCCTTTAATGCTTCTCATGG+TGG 0.478738 2_2:-4152713 Msa0231830:CDS
ACCAGCTGTAACCTTTATCA+TGG 0.479465 2_2:-4154179 Msa0231830:CDS
TTAAATTTGAGAACAAAAGC+AGG 0.485502 2_2:-4153709 Msa0231830:CDS
ATGGTGCAAATAGCATTTGC+TGG 0.489060 2_2:-4155328 Msa0231830:CDS
ATGTTGCTGAAGTTAAAGTC+AGG 0.496408 2_2:+4154227 None:intergenic
GGCACACAGAGAACCCGAAA+TGG 0.499459 2_2:+4153534 None:intergenic
AAAGGTGTTGAAATTAAGAT+GGG 0.500659 2_2:-4153625 Msa0231830:CDS
TGCTTGCTCTATGCTTTGAA+AGG 0.500838 2_2:-4153292 Msa0231830:CDS
AACGTGACATCCTTCTAGAT+TGG 0.501879 2_2:-4152133 Msa0231830:three_prime_UTR
CAATTGCTTTCATTGTTGAA+AGG 0.507773 2_2:-4155210 Msa0231830:intron
AGAAGAGGGCAAAGATGACT+TGG 0.516252 2_2:-4154877 Msa0231830:CDS
GCTTGCTCTATGCTTTGAAA+GGG 0.517954 2_2:-4153291 Msa0231830:CDS
ACCATAACCATTAACAACGT+TGG 0.520726 2_2:+4155346 None:intergenic
AACCACAACAACAATAATCA+AGG 0.522875 2_2:-4152334 Msa0231830:CDS
GGAGCGGTGTTGATTGTATG+TGG 0.523594 2_2:-4152484 Msa0231830:CDS
TGGCTTATATGCGGTTGTAT+GGG 0.524020 2_2:-4152464 Msa0231830:CDS
AACAGGAATTGGTGGGGCAA+TGG 0.524744 2_2:-4153662 Msa0231830:CDS
TAATACTTACCCTAAGGAAA+CGG 0.528146 2_2:+4154156 None:intergenic
ACTACTAACCGTTGCTTATG+CGG 0.544164 2_2:-4153234 Msa0231830:intron
GCTGTACTTGAGTAATGAGT+AGG 0.552365 2_2:+4153350 None:intergenic
GCAAGCAAATATACCTTCCA+AGG 0.555395 2_2:+4152653 None:intergenic
ATGAGAAACTACACCTTGGA+AGG 0.557923 2_2:-4152666 Msa0231830:intron
TCAACTGGGTCAAATTCATG+TGG 0.559483 2_2:+4152391 None:intergenic
TTTGAGAACAAAAGCAGGGA+AGG 0.570188 2_2:-4153704 Msa0231830:CDS
GTACACTAACAGGAATTGGT+GGG 0.571060 2_2:-4153669 Msa0231830:CDS
TTGAAAGGGATTTGAGTCAG+TGG 0.574813 2_2:-4153277 Msa0231830:CDS
CAACTGGGTCAAATTCATGT+GGG 0.581445 2_2:+4152392 None:intergenic
AGCAACATTTGCATCCGCAA+TGG 0.581666 2_2:-4154212 Msa0231830:CDS
GGTACACTAACAGGAATTGG+TGG 0.583339 2_2:-4153670 Msa0231830:CDS
CAGAGTCAACTCCAGCTAAG+TGG 0.583977 2_2:+4151981 None:intergenic
GCCATGATAAAGGTTACAGC+TGG 0.584742 2_2:+4154178 None:intergenic
AAGCAGTTGCAAATACAAAA+CGG 0.587659 2_2:+4155242 None:intergenic
TGGTATAAGGTTGGCCATTG+CGG 0.589106 2_2:+4154198 None:intergenic
ACCCGAAATGGTATTAGCAG+TGG 0.589256 2_2:+4153546 None:intergenic
CTGTACTTGAGTAATGAGTA+GGG 0.589429 2_2:+4153351 None:intergenic
TAAATTTGAGAACAAAAGCA+GGG 0.592408 2_2:-4153708 Msa0231830:CDS
AATTTGTGTAATGTAGTGCA+AGG 0.592733 2_2:-4155376 Msa0231830:CDS
TATAGTGGTTTCAGGAGCAA+TGG 0.595242 2_2:-4152794 Msa0231830:CDS
TATATCAAACTCCTACATGT+TGG 0.596245 2_2:-4152165 Msa0231830:three_prime_UTR
GGTTACAGCTGGTATAAGGT+TGG 0.597282 2_2:+4154189 None:intergenic
TGTTGCTGAAGTTAAAGTCA+GGG 0.602599 2_2:+4154228 None:intergenic
ATAAGAGATGGCACTAGCCA+AGG 0.602961 2_2:+4153513 None:intergenic
AGAATCAAAATAGAGTCCGC+TGG 0.615362 2_2:+4152098 None:intergenic
AAGCCACAGTGCATAAGAGA+TGG 0.619720 2_2:+4153501 None:intergenic
AGTTGCAAATACAAAACGGT+AGG 0.621835 2_2:+4155246 None:intergenic
AAATTTCAGCATTATTGGAG+CGG 0.626677 2_2:-4152500 Msa0231830:intron
TTGAATGAGAAACTACACCT+TGG 0.634029 2_2:-4152670 Msa0231830:CDS
GGCTTATATGCGGTTGTATG+GGG 0.639210 2_2:-4152463 Msa0231830:CDS
ACCTCACAACTATTTCAACT+GGG 0.643907 2_2:+4152377 None:intergenic
ACCCAGTTGAAATAGTTGTG+AGG 0.644210 2_2:-4152378 Msa0231830:CDS
TCATGGTGTGTACACATGAG+AGG 0.646320 2_2:-4152760 Msa0231830:CDS
TCAAGGTAATACTTTACAGG+TGG 0.650018 2_2:-4152317 Msa0231830:CDS
AAAGCATAGAGCAAGCACAA+TGG 0.656633 2_2:+4153298 None:intergenic
CACCATGAGAAGCATTAAAG+GGG 0.657738 2_2:+4152714 None:intergenic
TACACTAACAGGAATTGGTG+GGG 0.658239 2_2:-4153668 Msa0231830:CDS
GATTGTATGTGGCTTATATG+CGG 0.658345 2_2:-4152473 Msa0231830:CDS
CTAACATACCGCATAAGCAA+CGG 0.664599 2_2:+4153226 None:intergenic
TACAAGTTAGCTGTAAACGA+TGG 0.680743 2_2:-4155292 Msa0231830:CDS
GTGCCATCTCTTATGCACTG+TGG 0.699959 2_2:-4153504 Msa0231830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTTTTTTCATGT+AGG - chr2_2:4152911-4152930 Msa0231830:intron 10.0%
!!! TTTATTATTTTTTTCATGTA+GGG - chr2_2:4152912-4152931 Msa0231830:intron 10.0%
!! AAAGATTAAACTATAAAATT+TGG - chr2_2:4153137-4153156 Msa0231830:intron 10.0%
!! TAAATAAATAAAAAATCAGT+TGG + chr2_2:4153786-4153805 None:intergenic 10.0%
!!! TTATTACACTATTTTTATAA+TGG + chr2_2:4154297-4154316 None:intergenic 10.0%
!! TTTAGTTAATGAGTTAAAAA+TGG + chr2_2:4152834-4152853 None:intergenic 15.0%
!!! TTATTATTTTTTTCATGTAG+GGG - chr2_2:4152913-4152932 Msa0231830:intron 15.0%
!! TGAAAAATTAAAAGTTACAT+TGG + chr2_2:4153453-4153472 None:intergenic 15.0%
!!! TAACTTTTAATTTTTCAGTA+TGG - chr2_2:4153456-4153475 Msa0231830:intron 15.0%
!!! TAATTTTCATTGATTGATAT+TGG + chr2_2:4153756-4153775 None:intergenic 15.0%
!! TTATATCCAATGATTAATTA+AGG - chr2_2:4154017-4154036 Msa0231830:intron 15.0%
!! TTAAATCCTTAATTAATCAT+TGG + chr2_2:4154026-4154045 None:intergenic 15.0%
!! AATGGAGAATAAATAATTCA+TGG - chr2_2:4152040-4152059 Msa0231830:three_prime_UTR 20.0%
!!! TATACTCTAACTATTTTAAG+TGG - chr2_2:4152609-4152628 Msa0231830:intron 20.0%
!! TTGGGAATTATATTTGTTTA+AGG - chr2_2:4152737-4152756 Msa0231830:CDS 20.0%
!! AGTAACTCGTAAATTATAAT+TGG + chr2_2:4153079-4153098 None:intergenic 20.0%
!! CCTTCAAAAAAAAACATAAT+AGG + chr2_2:4153164-4153183 None:intergenic 20.0%
!!! CCTATTATGTTTTTTTTTGA+AGG - chr2_2:4153161-4153180 Msa0231830:intron 20.0%
!! AAGAAAGAGAGTTAATATAT+AGG + chr2_2:4153196-4153215 None:intergenic 20.0%
!!! ATTACGTAATAATTTGCAAA+GGG + chr2_2:4153240-4153259 None:intergenic 20.0%
!!! TATTACGTAATAATTTGCAA+AGG + chr2_2:4153241-4153260 None:intergenic 20.0%
!!! ATGATGTTATTTTCTTAAGT+TGG - chr2_2:4154102-4154121 Msa0231830:intron 20.0%
!!! ACTTCCTATATTTTTTTTTG+TGG - chr2_2:4154227-4154246 Msa0231830:CDS 20.0%
!! GAAATACTAAGTTGTTTAAT+TGG - chr2_2:4154600-4154619 Msa0231830:intron 20.0%
!! TATTTGACCTCAAAAAATTA+GGG + chr2_2:4154627-4154646 None:intergenic 20.0%
!! ATATTTGACCTCAAAAAATT+AGG + chr2_2:4154628-4154647 None:intergenic 20.0%
!!! AATGCTGAAATTTTTAACAA+AGG + chr2_2:4154686-4154705 None:intergenic 20.0%
!! GTTAAAAATTTCAGCATTAT+TGG - chr2_2:4154688-4154707 Msa0231830:intron 20.0%
!!! AATTTGATACTCCATATTTT+AGG + chr2_2:4155004-4155023 None:intergenic 20.0%
!!! ATGCTATAATGTATTTTAGT+TGG + chr2_2:4155121-4155140 None:intergenic 20.0%
!! AAGAACAAAATGAAGAAAAA+GGG - chr2_2:4155152-4155171 Msa0231830:intron 20.0%
!! CTCTTCTTATTTATGATCAA+TGG - chr2_2:4152022-4152041 Msa0231830:three_prime_UTR 25.0%
!! TCTTTTCATACATATAGCTT+AGG - chr2_2:4152160-4152179 Msa0231830:three_prime_UTR 25.0%
! ATGTGATTTACTGTCATTAT+TGG + chr2_2:4152208-4152227 None:intergenic 25.0%
!! TATGCATGAAGATTTTCTTA+TGG - chr2_2:4152412-4152431 Msa0231830:CDS 25.0%
! TGTAAACTGTGAAATATGAA+TGG + chr2_2:4152881-4152900 None:intergenic 25.0%
! TTAAATTTGAGAACAAAAGC+AGG - chr2_2:4153484-4153503 Msa0231830:intron 25.0%
! TAAATTTGAGAACAAAAGCA+GGG - chr2_2:4153485-4153504 Msa0231830:intron 25.0%
!!! TAAAGGTGTTGAAATTAAGA+TGG - chr2_2:4153567-4153586 Msa0231830:CDS 25.0%
!!! AAAGGTGTTGAAATTAAGAT+GGG - chr2_2:4153568-4153587 Msa0231830:CDS 25.0%
! GATGATGCAAAAGATTTAAA+TGG + chr2_2:4153600-4153619 None:intergenic 25.0%
!! AATCTTTTGCATCATCAAAA+TGG - chr2_2:4153604-4153623 Msa0231830:CDS 25.0%
! GATATTTGTCATGATTTGAT+TGG - chr2_2:4154145-4154164 Msa0231830:intron 25.0%
!!! TCCTATATTTTTTTTTGTGG+TGG - chr2_2:4154230-4154249 Msa0231830:CDS 25.0%
! AGAAAATCATGTTTAGCTAT+TGG - chr2_2:4154316-4154335 Msa0231830:intron 25.0%
! TTGATTATTAATTCCACATG+AGG - chr2_2:4154342-4154361 Msa0231830:intron 25.0%
! TAATCAAGGTAATACTTTAC+AGG - chr2_2:4154873-4154892 Msa0231830:CDS 25.0%
! GAAGAACAAAATGAAGAAAA+AGG - chr2_2:4155151-4155170 Msa0231830:intron 25.0%
! GCTTAGATTTATATCTTTCA+TGG - chr2_2:4155263-4155282 Msa0231830:CDS 25.0%
! ATGTACTTTGCATATATTGT+AGG + chr2_2:4155336-4155355 None:intergenic 25.0%
AATTTGTGTAATGTAGTGCA+AGG - chr2_2:4151817-4151836 Msa0231830:three_prime_UTR 30.0%
AAGCAGTTGCAAATACAAAA+CGG + chr2_2:4151954-4151973 None:intergenic 30.0%
CTTTCAACAATGAAAGCAAT+TGG + chr2_2:4151985-4152004 None:intergenic 30.0%
CAATTGCTTTCATTGTTGAA+AGG - chr2_2:4151983-4152002 Msa0231830:three_prime_UTR 30.0%
ATACATATAGCTTAGGAAAG+TGG - chr2_2:4152167-4152186 Msa0231830:three_prime_UTR 30.0%
ATTCTGTTCTAACTTCAAGT+GGG + chr2_2:4152263-4152282 None:intergenic 30.0%
!!! CTGTTTCAGTCATTTTTATG+CGG - chr2_2:4152345-4152364 Msa0231830:CDS 30.0%
!! TCATTTTTATGCGGTTTGTT+TGG - chr2_2:4152354-4152373 Msa0231830:CDS 30.0%
!! CATTTTTATGCGGTTTGTTT+GGG - chr2_2:4152355-4152374 Msa0231830:CDS 30.0%
GCACTAGAAATACAAATCAA+TGG + chr2_2:4152548-4152567 None:intergenic 30.0%
TGAAAAGTGGACGTAAATAT+AGG + chr2_2:4152570-4152589 None:intergenic 30.0%
TTTGTTGAAGTCTTGAAAAG+TGG + chr2_2:4152583-4152602 None:intergenic 30.0%
TCAAACTCGGTATAAAATGT+TGG - chr2_2:4152646-4152665 Msa0231830:intron 30.0%
CAAACTCGGTATAAAATGTT+GGG - chr2_2:4152647-4152666 Msa0231830:intron 30.0%
TAATACTTACCCTAAGGAAA+CGG + chr2_2:4153040-4153059 None:intergenic 30.0%
AAGATATTAGGTACACTAAC+AGG - chr2_2:4153514-4153533 Msa0231830:CDS 30.0%
!! ATGGTATTGACATTCGTTAA+AGG - chr2_2:4153550-4153569 Msa0231830:CDS 30.0%
!!! TACAGCGTTGATATCTTTTT+GGG - chr2_2:4153860-4153879 Msa0231830:intron 30.0%
GCCACCACAAAAAAAAATAT+AGG + chr2_2:4154234-4154253 None:intergenic 30.0%
TGCATAATATATGCAACGTT+CGG + chr2_2:4154270-4154289 None:intergenic 30.0%
CATGTAAATTGAATTGTGCA+GGG - chr2_2:4154376-4154395 Msa0231830:intron 30.0%
GTGTAGTTTCTCATTCAAAA+TGG + chr2_2:4154521-4154540 None:intergenic 30.0%
!!! AATTGGACCCTAATTTTTTG+AGG - chr2_2:4154617-4154636 Msa0231830:intron 30.0%
AAATTTCAGCATTATTGGAG+CGG - chr2_2:4154693-4154712 Msa0231830:intron 30.0%
!!! AATTCATGTGGGTTTTTTGA+TGG + chr2_2:4154793-4154812 None:intergenic 30.0%
!!! GTTGCTTTTATCTTCTTCTA+TGG + chr2_2:4154842-4154861 None:intergenic 30.0%
AACCACAACAACAATAATCA+AGG - chr2_2:4154859-4154878 Msa0231830:CDS 30.0%
! TACCTTGATTATTGTTGTTG+TGG + chr2_2:4154864-4154883 None:intergenic 30.0%
TAATACTTTACAGGTGGTTA+AGG - chr2_2:4154882-4154901 Msa0231830:CDS 30.0%
TGCATGTAATGCCTAAAATA+TGG - chr2_2:4154990-4155009 Msa0231830:intron 30.0%
TATATCAAACTCCTACATGT+TGG - chr2_2:4155028-4155047 Msa0231830:intron 30.0%
TATATGCAAAGTACATCTTC+AGG - chr2_2:4155340-4155359 Msa0231830:CDS 30.0%
! TTTGAAGCCAACGTTGTTAA+TGG - chr2_2:4151840-4151859 Msa0231830:three_prime_UTR 35.0%
ACCATAACCATTAACAACGT+TGG + chr2_2:4151850-4151869 None:intergenic 35.0%
TACAAGTTAGCTGTAAACGA+TGG - chr2_2:4151901-4151920 Msa0231830:three_prime_UTR 35.0%
TAAACGATGGCATGAGTTTA+AGG - chr2_2:4151914-4151933 Msa0231830:three_prime_UTR 35.0%
AGTTGCAAATACAAAACGGT+AGG + chr2_2:4151950-4151969 None:intergenic 35.0%
TTCTGTTCTAACTTCAAGTG+GGG + chr2_2:4152262-4152281 None:intergenic 35.0%
CATTCTGTTCTAACTTCAAG+TGG + chr2_2:4152264-4152283 None:intergenic 35.0%
! GCTTTTGTTAATTTTGCTGC+AGG - chr2_2:4152292-4152311 Msa0231830:CDS 35.0%
CATAGTCGATGTTTCAAACT+CGG - chr2_2:4152633-4152652 Msa0231830:intron 35.0%
TGTTGCTGAAGTTAAAGTCA+GGG + chr2_2:4152968-4152987 None:intergenic 35.0%
ATGTTGCTGAAGTTAAAGTC+AGG + chr2_2:4152969-4152988 None:intergenic 35.0%
TAAAGGTTACAGCTGGTATA+AGG + chr2_2:4153011-4153030 None:intergenic 35.0%
GACACTTAATACTTACCCTA+AGG + chr2_2:4153046-4153065 None:intergenic 35.0%
TTAGGTACACTAACAGGAAT+TGG - chr2_2:4153520-4153539 Msa0231830:CDS 35.0%
TTGCATCATCAAAATGGTGT+TGG - chr2_2:4153610-4153629 Msa0231830:CDS 35.0%
CTGTACTTGAGTAATGAGTA+GGG + chr2_2:4153845-4153864 None:intergenic 35.0%
!!! GTACAGCGTTGATATCTTTT+TGG - chr2_2:4153859-4153878 Msa0231830:intron 35.0%
GATTTGAGTCAGTGGAAATT+GGG - chr2_2:4153924-4153943 Msa0231830:intron 35.0%
ACATCATCGAGTGATTTGAT+TGG + chr2_2:4154089-4154108 None:intergenic 35.0%
CATAATATATGCAACGTTCG+GGG + chr2_2:4154268-4154287 None:intergenic 35.0%
GCATAATATATGCAACGTTC+GGG + chr2_2:4154269-4154288 None:intergenic 35.0%
CCTGCACAATTCAATTTACA+TGG + chr2_2:4154378-4154397 None:intergenic 35.0%
CCATGTAAATTGAATTGTGC+AGG - chr2_2:4154375-4154394 Msa0231830:intron 35.0%
CAATGGTAGCTGTAATTTCA+TGG - chr2_2:4154416-4154435 Msa0231830:intron 35.0%
GTAAAAACTGAGGCAAACAA+TGG + chr2_2:4154460-4154479 None:intergenic 35.0%
CATTAAAGGGGTAAAAACTG+AGG + chr2_2:4154470-4154489 None:intergenic 35.0%
TTGAATGAGAAACTACACCT+TGG - chr2_2:4154523-4154542 Msa0231830:intron 35.0%
GATTGTATGTGGCTTATATG+CGG - chr2_2:4154720-4154739 Msa0231830:intron 35.0%
ACCTCACAACTATTTCAACT+GGG + chr2_2:4154819-4154838 None:intergenic 35.0%
TCAAGGTAATACTTTACAGG+TGG - chr2_2:4154876-4154895 Msa0231830:CDS 35.0%
GTAGAAAGTCAAGAAAAACG+AGG - chr2_2:4154952-4154971 Msa0231830:intron 35.0%
AAAGTCAAGAAAAACGAGGA+GGG - chr2_2:4154956-4154975 Msa0231830:intron 35.0%
! TTCATTTTGGACCAACATGT+AGG + chr2_2:4155042-4155061 None:intergenic 35.0%
GCCAACGTTGTTAATGGTTA+TGG - chr2_2:4151846-4151865 Msa0231830:three_prime_UTR 40.0%
ATGGTGCAAATAGCATTTGC+TGG - chr2_2:4151865-4151884 Msa0231830:three_prime_UTR 40.0%
! AATTTTGCTGCAGGAAGAAG+AGG - chr2_2:4152301-4152320 Msa0231830:CDS 40.0%
! ATTTTGCTGCAGGAAGAAGA+GGG - chr2_2:4152302-4152321 Msa0231830:CDS 40.0%
TTCAAGTACGAATGTAGCAG+TGG - chr2_2:4152465-4152484 Msa0231830:CDS 40.0%
CACGCTTGCTTTATAGTACT+TGG + chr2_2:4152513-4152532 None:intergenic 40.0%
ACCAGCTGTAACCTTTATCA+TGG - chr2_2:4153014-4153033 Msa0231830:intron 40.0%
TAAGGAAACGGCCATGATAA+AGG + chr2_2:4153028-4153047 None:intergenic 40.0%
TTTATCATGGCCGTTTCCTT+AGG - chr2_2:4153027-4153046 Msa0231830:intron 40.0%
TTATCATGGCCGTTTCCTTA+GGG - chr2_2:4153028-4153047 Msa0231830:intron 40.0%
TTTGAGAACAAAAGCAGGGA+AGG - chr2_2:4153489-4153508 Msa0231830:intron 40.0%
GTACACTAACAGGAATTGGT+GGG - chr2_2:4153524-4153543 Msa0231830:CDS 40.0%
TACACTAACAGGAATTGGTG+GGG - chr2_2:4153525-4153544 Msa0231830:CDS 40.0%
CTCCACTGCTAATACCATTT+CGG - chr2_2:4153645-4153664 Msa0231830:CDS 40.0%
TCCACTGCTAATACCATTTC+GGG - chr2_2:4153646-4153665 Msa0231830:CDS 40.0%
TGCACTGTGGCTTATTATTC+AGG - chr2_2:4153702-4153721 Msa0231830:CDS 40.0%
GCTGTACTTGAGTAATGAGT+AGG + chr2_2:4153846-4153865 None:intergenic 40.0%
AAAGCATAGAGCAAGCACAA+TGG + chr2_2:4153898-4153917 None:intergenic 40.0%
! TGCTTGCTCTATGCTTTGAA+AGG - chr2_2:4153901-4153920 Msa0231830:intron 40.0%
!! GCTTGCTCTATGCTTTGAAA+GGG - chr2_2:4153902-4153921 Msa0231830:intron 40.0%
TTGAAAGGGATTTGAGTCAG+TGG - chr2_2:4153916-4153935 Msa0231830:intron 40.0%
GGATTTGAGTCAGTGGAAAT+TGG - chr2_2:4153923-4153942 Msa0231830:intron 40.0%
ACTACTAACCGTTGCTTATG+CGG - chr2_2:4153959-4153978 Msa0231830:intron 40.0%
CTAACATACCGCATAAGCAA+CGG + chr2_2:4153970-4153989 None:intergenic 40.0%
!!! ATTTTTTTTTGTGGTGGCCG+TGG - chr2_2:4154236-4154255 Msa0231830:CDS 40.0%
TGGTATATCTTAGCCTCATG+TGG + chr2_2:4154358-4154377 None:intergenic 40.0%
TTGAATTGTGCAGGGTATAG+TGG - chr2_2:4154384-4154403 Msa0231830:intron 40.0%
TATAGTGGTTTCAGGAGCAA+TGG - chr2_2:4154399-4154418 Msa0231830:intron 40.0%
TACCCCTTTAATGCTTCTCA+TGG - chr2_2:4154477-4154496 Msa0231830:intron 40.0%
!! CACCATGAGAAGCATTAAAG+GGG + chr2_2:4154482-4154501 None:intergenic 40.0%
!! CCACCATGAGAAGCATTAAA+GGG + chr2_2:4154483-4154502 None:intergenic 40.0%
ATGAGAAACTACACCTTGGA+AGG - chr2_2:4154527-4154546 Msa0231830:intron 40.0%
GCAAGCAAATATACCTTCCA+AGG + chr2_2:4154543-4154562 None:intergenic 40.0%
TGGCTTATATGCGGTTGTAT+GGG - chr2_2:4154729-4154748 Msa0231830:intron 40.0%
CAACTGGGTCAAATTCATGT+GGG + chr2_2:4154804-4154823 None:intergenic 40.0%
TCAACTGGGTCAAATTCATG+TGG + chr2_2:4154805-4154824 None:intergenic 40.0%
ACCCAGTTGAAATAGTTGTG+AGG - chr2_2:4154815-4154834 Msa0231830:intron 40.0%
GACCTCACAACTATTTCAAC+TGG + chr2_2:4154820-4154839 None:intergenic 40.0%
GAAAGTCAAGAAAAACGAGG+AGG - chr2_2:4154955-4154974 Msa0231830:intron 40.0%
AAGTCAAGAAAAACGAGGAG+GGG - chr2_2:4154957-4154976 Msa0231830:intron 40.0%
! GAAGGATGTCACGTTCATTT+TGG + chr2_2:4155055-4155074 None:intergenic 40.0%
AACGTGACATCCTTCTAGAT+TGG - chr2_2:4155060-4155079 Msa0231830:intron 40.0%
!!! GCATTTTTGGCCAATCTAGA+AGG + chr2_2:4155073-4155092 None:intergenic 40.0%
AGAATCAAAATAGAGTCCGC+TGG + chr2_2:4155098-4155117 None:intergenic 40.0%
TAATTGAGTGACCACTTAGC+TGG - chr2_2:4155201-4155220 Msa0231830:intron 40.0%
AGAAGAGGGCAAAGATGACT+TGG - chr2_2:4152316-4152335 Msa0231830:CDS 45.0%
AGCAACATTTGCATCCGCAA+TGG - chr2_2:4152981-4153000 Msa0231830:intron 45.0%
! TGGTATAAGGTTGGCCATTG+CGG + chr2_2:4152998-4153017 None:intergenic 45.0%
GGTTACAGCTGGTATAAGGT+TGG + chr2_2:4153007-4153026 None:intergenic 45.0%
GCCATGATAAAGGTTACAGC+TGG + chr2_2:4153018-4153037 None:intergenic 45.0%
GCAGGGAAGGCAAAGATATT+AGG - chr2_2:4153502-4153521 Msa0231830:CDS 45.0%
GGTACACTAACAGGAATTGG+TGG - chr2_2:4153523-4153542 Msa0231830:CDS 45.0%
ACCCGAAATGGTATTAGCAG+TGG + chr2_2:4153650-4153669 None:intergenic 45.0%
ATAAGAGATGGCACTAGCCA+AGG + chr2_2:4153683-4153702 None:intergenic 45.0%
AAGCCACAGTGCATAAGAGA+TGG + chr2_2:4153695-4153714 None:intergenic 45.0%
TGAGTCAGTGGAAATTGGGT+TGG - chr2_2:4153928-4153947 Msa0231830:intron 45.0%
AACGTTCGGGGTTTAAACCA+CGG + chr2_2:4154256-4154275 None:intergenic 45.0%
TCATGGTGTGTACACATGAG+AGG - chr2_2:4154433-4154452 Msa0231830:intron 45.0%
CCCTTTAATGCTTCTCATGG+TGG - chr2_2:4154480-4154499 Msa0231830:intron 45.0%
!! GCCACCATGAGAAGCATTAA+AGG + chr2_2:4154484-4154503 None:intergenic 45.0%
AATGCTTCTCATGGTGGCTT+TGG - chr2_2:4154486-4154505 Msa0231830:intron 45.0%
GTGGCTTATATGCGGTTGTA+TGG - chr2_2:4154728-4154747 Msa0231830:intron 45.0%
GGCTTATATGCGGTTGTATG+GGG - chr2_2:4154730-4154749 Msa0231830:intron 45.0%
TTGGCCAAAAATGCTACCAG+CGG - chr2_2:4155079-4155098 Msa0231830:intron 45.0%
!! AATTAATTAATCAATTAATT+AGG + chr2_2:4152234-4152253 None:intergenic 5.0%
!! ATGTTAAAATATAATAATAT+TGG - chr2_2:4152718-4152737 Msa0231830:CDS 5.0%
!! TGTTAAAATATAATAATATT+GGG - chr2_2:4152719-4152738 Msa0231830:CDS 5.0%
!!! TTTTATTTATTTATTGATTT+TGG - chr2_2:4153793-4153812 Msa0231830:intron 5.0%
!!! TTTATTTATTTATTGATTTT+GGG - chr2_2:4153794-4153813 Msa0231830:intron 5.0%
!! ATGATTAATAAATTTATAAA+AGG + chr2_2:4154565-4154584 None:intergenic 5.0%
!! AAATATAATATTTACTTTAT+TGG - chr2_2:4154642-4154661 Msa0231830:intron 5.0%
AACAGGAATTGGTGGGGCAA+TGG - chr2_2:4153531-4153550 Msa0231830:CDS 50.0%
GTGCCATCTCTTATGCACTG+TGG - chr2_2:4153689-4153708 Msa0231830:CDS 50.0%
GTGCAGGGTATAGTGGTTTC+AGG - chr2_2:4154391-4154410 Msa0231830:intron 50.0%
!! GGAGCGGTGTTGATTGTATG+TGG - chr2_2:4154709-4154728 Msa0231830:intron 50.0%
! GAGTCCGCTGGTAGCATTTT+TGG + chr2_2:4155086-4155105 None:intergenic 50.0%
CAGAGTCAACTCCAGCTAAG+TGG + chr2_2:4155215-4155234 None:intergenic 50.0%
GGCACACAGAGAACCCGAAA+TGG + chr2_2:4153662-4153681 None:intergenic 55.0%
! TTCGGGTTCTCTGTGTGCCT+TGG - chr2_2:4153663-4153682 Msa0231830:CDS 55.0%
!! CTTCTCATGGTGGCTTTGGC+TGG - chr2_2:4154490-4154509 Msa0231830:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 4151808 4155407 4151808 ID=Msa0231830;Name=Msa0231830
chr2_2 mRNA 4151808 4155407 4151808 ID=Msa0231830-mRNA-1;Parent=Msa0231830;Name=Msa0231830-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.66|0.42|1|1|1|7|402|413
chr2_2 exon 4151808 4152513 4151808 ID=Msa0231830-mRNA-1:exon:1699;Parent=Msa0231830-mRNA-1
chr2_2 exon 4152667 4152818 4152667 ID=Msa0231830-mRNA-1:exon:1698;Parent=Msa0231830-mRNA-1
chr2_2 exon 4153235 4153393 4153235 ID=Msa0231830-mRNA-1:exon:1697;Parent=Msa0231830-mRNA-1
chr2_2 exon 4153492 4153741 4153492 ID=Msa0231830-mRNA-1:exon:1696;Parent=Msa0231830-mRNA-1
chr2_2 exon 4154166 4154282 4154166 ID=Msa0231830-mRNA-1:exon:1695;Parent=Msa0231830-mRNA-1
chr2_2 exon 4154839 4154901 4154839 ID=Msa0231830-mRNA-1:exon:1694;Parent=Msa0231830-mRNA-1
chr2_2 exon 4155211 4155407 4155211 ID=Msa0231830-mRNA-1:exon:1693;Parent=Msa0231830-mRNA-1
chr2_2 CDS 4155211 4155407 4155211 ID=Msa0231830-mRNA-1:cds;Parent=Msa0231830-mRNA-1
chr2_2 CDS 4154839 4154901 4154839 ID=Msa0231830-mRNA-1:cds;Parent=Msa0231830-mRNA-1
chr2_2 CDS 4154166 4154282 4154166 ID=Msa0231830-mRNA-1:cds;Parent=Msa0231830-mRNA-1
chr2_2 CDS 4153492 4153741 4153492 ID=Msa0231830-mRNA-1:cds;Parent=Msa0231830-mRNA-1
chr2_2 CDS 4153235 4153393 4153235 ID=Msa0231830-mRNA-1:cds;Parent=Msa0231830-mRNA-1
chr2_2 CDS 4152667 4152818 4152667 ID=Msa0231830-mRNA-1:cds;Parent=Msa0231830-mRNA-1
chr2_2 CDS 4152210 4152513 4152210 ID=Msa0231830-mRNA-1:cds;Parent=Msa0231830-mRNA-1
chr2_2 three_prime_UTR 4151808 4152209 4151808 ID=Msa0231830-mRNA-1:three_prime_utr;Parent=Msa0231830-mRNA-1
Gene Sequence

>Msa0231830

ATGAAGAACAATTTGTGTAATGTAGTGCAAGGTTTGAAGCCAACGTTGTTAATGGTTATGGTGCAAATAGCATTTGCTGGTGTTAATGTTCTATACAAGTTAGCTGTAAACGATGGCATGAGTTTAAGGATTGTTGTTGCCTACCGTTTTGTATTTGCAACTGCTTTCATAGCTCCAATTGCTTTCATTGTTGAAAGGAAGAAGAGGGCAAAGATGACTTGGACAATACTGTTTCAGTCATTTTTATGCGGTTTGTTTGGGGGATCATTAGCTCAAAACTTTTACTTACAAGCCCTGACTTTAACTTCAGCAACATTTGCATCCGCAATGGCCAACCTTATACCAGCTGTAACCTTTATCATGGCCGTTTCCTTAGGTATGGAAAAATTAAATTTGAGAACAAAAGCAGGGAAGGCAAAGATATTAGGTACACTAACAGGAATTGGTGGGGCAATGGTATTGACATTCGTTAAAGGTGTTGAAATTAAGATGGGTTCATTCCATTTAAATCTTTTGCATCATCAAAATGGTGTTGGATCACACACTATCTCCACTGCTAATACCATTTCGGGTTCTCTGTGTGCCTTGGCTAGTGCCATCTCTTATGCACTGTGGCTTATTATTCAGACAAAGATGAGTGAAAGATACCCTACTCATTACTCAAGTACAGCGTTGATATCTTTTTGGGCGTCACTTGTTTCCATTGTGCTTGCTCTATGCTTTGAAAGGGATTTGAGTCAGTGGAAATTGGGTTGGAATATTAGACTACTAACCGTTGCTTATGCGGGTATAGTGGTTTCAGGAGCAATGGTAGCTGTAATTTCATGGTGTGTACACATGAGAGGTCCATTGTTTGCCTCAGTTTTTACCCCTTTAATGCTTCTCATGGTGGCTTTGGCTGGTTGTACCATTTTGAATGAGAAACTACACCTTGGAAGCATTATTGGAGCGGTGTTGATTGTATGTGGCTTATATGCGGTTGTATGGGGAAAAAGTAAAGAAATGAAGAAAAAGAATCAATTAGTGCCATCAAAAAACCCACATGAATTTGACCCAGTTGAAATAGTTGTGAGGTCCATAGAAGAAGATAAAAGCAACCACAACAACAATAATCAAGGTAATACTTTACAGGTGGTTAAGGATAATGAAGATTCACAAGCAGATGAACATGAAAAGCAAAGTCAACATGTAGAAAGTCAAGAAAAACGAGGAGGGGTAAAAGAAGTTGCATGTAATGCCTAA

Protein sequence

>Msa0231830

MKNNLCNVVQGLKPTLLMVMVQIAFAGVNVLYKLAVNDGMSLRIVVAYRFVFATAFIAPIAFIVERKKRAKMTWTILFQSFLCGLFGGSLAQNFYLQALTLTSATFASAMANLIPAVTFIMAVSLGMEKLNLRTKAGKAKILGTLTGIGGAMVLTFVKGVEIKMGSFHLNLLHHQNGVGSHTISTANTISGSLCALASAISYALWLIIQTKMSERYPTHYSSTALISFWASLVSIVLALCFERDLSQWKLGWNIRLLTVAYAGIVVSGAMVAVISWCVHMRGPLFASVFTPLMLLMVALAGCTILNEKLHLGSIIGAVLIVCGLYAVVWGKSKEMKKKNQLVPSKNPHEFDPVEIVVRSIEEDKSNHNNNNQGNTLQVVKDNEDSQADEHEKQSQHVESQEKRGGVKEVACNA*