AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0233860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233860 MtrunA17_Chr2g0281731 91.094 393 34 1 1 393 1 392 0.0 749
Msa0233860 MtrunA17_Chr2g0281651 93.684 380 24 0 431 810 34 413 0.0 736
Msa0233860 MtrunA17_Chr2g0281681 95.406 283 13 0 1 283 1 283 0.0 566
Msa0233860 MtrunA17_Chr3g0101681 29.597 794 503 22 7 779 37 795 1.87e-93 310
Msa0233860 MtrunA17_Chr2g0310121 28.554 809 521 20 3 775 8 795 6.49e-93 309
Msa0233860 MtrunA17_Chr2g0281721 85.039 127 18 1 412 537 1 127 1.03e-69 225
Msa0233860 MtrunA17_Chr2g0281711 79.699 133 27 0 678 810 1 133 9.96e-61 201
Msa0233860 MtrunA17_Chr2g0281661 93.814 97 6 0 298 394 1 97 4.45e-57 190
Msa0233860 MtrunA17_Chr7g0218001 25.798 721 468 25 30 731 126 798 8.33e-49 185
Msa0233860 MtrunA17_Chr7g0259881 25.513 682 413 20 30 673 10 634 4.11e-48 182
Msa0233860 MtrunA17_Chr4g0023911 32.558 387 233 12 303 681 137 503 2.18e-43 166
Msa0233860 MtrunA17_Chr2g0310331 29.245 424 265 12 254 671 104 498 5.56e-40 156
Msa0233860 MtrunA17_Chr8g0357411 28.035 453 287 11 261 703 113 536 1.48e-38 152
Msa0233860 MtrunA17_Chr2g0323131 27.700 426 264 12 253 669 86 476 2.73e-35 142
Msa0233860 MtrunA17_Chr2g0323151 27.700 426 263 12 253 669 2 391 2.92e-35 140
Msa0233860 MtrunA17_Chr2g0319051 25.721 451 303 10 255 698 27 452 3.06e-33 135
Msa0233860 MtrunA17_Chr2g0319041 24.182 550 383 12 211 750 20 545 6.17e-33 134
Msa0233860 MtrunA17_Chr2g0310401 28.291 357 229 9 320 669 6 342 2.94e-32 130
Msa0233860 MtrunA17_Chr6g0451711 25.874 429 284 13 254 675 71 472 2.70e-31 129
Msa0233860 MtrunA17_Chr6g0466051 25.293 427 289 11 254 675 67 468 5.23e-31 129
Msa0233860 MtrunA17_Chr6g0465851 25.059 427 290 11 254 675 32 433 2.29e-30 126
Msa0233860 MtrunA17_Chr6g0465911 25.059 427 290 11 254 675 67 468 2.46e-30 126
Msa0233860 MtrunA17_Chr3g0105071 26.682 431 279 14 254 675 70 472 9.62e-30 125
Msa0233860 MtrunA17_Chr5g0431651 23.647 499 334 18 191 675 2 467 8.65e-29 122
Msa0233860 MtrunA17_Chr4g0008621 25.845 414 274 12 211 614 27 417 2.40e-28 119
Msa0233860 MtrunA17_Chr3g0082691 24.590 427 293 11 254 675 66 468 9.90e-28 118
Msa0233860 MtrunA17_Chr4g0048921 26.256 438 286 10 255 684 87 495 1.20e-27 118
Msa0233860 MtrunA17_Chr6g0465441 24.480 433 295 11 249 675 62 468 1.43e-27 118
Msa0233860 MtrunA17_Chr7g0236961 24.186 430 290 12 254 675 12 413 8.73e-27 115
Msa0233860 MtrunA17_Chr7g0237011 24.186 430 290 12 254 675 12 413 1.41e-26 114
Msa0233860 MtrunA17_Chr5g0425371 25.694 432 281 12 254 675 67 468 1.83e-26 114
Msa0233860 MtrunA17_Chr8g0336181 23.835 558 375 14 211 750 19 544 1.92e-26 114
Msa0233860 MtrunA17_Chr7g0236991 24.419 430 289 13 254 675 67 468 1.98e-26 114
Msa0233860 MtrunA17_Chr7g0237001 24.186 430 290 12 254 675 67 468 2.00e-26 114
Msa0233860 MtrunA17_Chr7g0237041 24.186 430 290 12 254 675 67 468 2.00e-26 114
Msa0233860 MtrunA17_Chr7g0237081 24.186 430 290 12 254 675 67 468 2.00e-26 114
Msa0233860 MtrunA17_Chr7g0237051 24.186 430 290 12 254 675 67 468 2.00e-26 114
Msa0233860 MtrunA17_Chr4g0024691 25.116 430 286 13 254 675 75 476 3.98e-26 114
Msa0233860 MtrunA17_Chr4g0042111 23.617 470 323 12 257 719 79 519 7.23e-26 113
Msa0233860 MtrunA17_Chr4g0048911 23.340 497 343 13 255 745 78 542 2.89e-25 111
Msa0233860 MtrunA17_Chr5g0431571 24.746 493 340 13 254 741 62 528 3.69e-24 107
Msa0233860 MtrunA17_Chr3g0105691 24.835 455 281 16 236 669 47 461 5.50e-24 107
Msa0233860 MtrunA17_Chr8g0357231 31.863 204 131 4 504 700 1 203 1.12e-23 101
Msa0233860 MtrunA17_Chr3g0108981 25.587 426 269 12 261 669 10 404 1.26e-23 105
Msa0233860 MtrunA17_Chr3g0108961 25.587 426 269 12 261 669 10 404 1.26e-23 105
Msa0233860 MtrunA17_Chr3g0108941 25.408 429 266 14 261 669 35 429 1.96e-23 105
Msa0233860 MtrunA17_Chr6g0477111 24.533 428 270 13 261 669 10 403 2.52e-23 104
Msa0233860 MtrunA17_Chr7g0218031 29.304 273 173 10 17 283 129 387 3.66e-23 102
Msa0233860 MtrunA17_Chr3g0109021 24.823 423 275 11 261 669 35 428 4.39e-23 103
Msa0233860 MtrunA17_Chr6g0466111 25.776 322 212 9 254 571 32 330 8.47e-23 100
Msa0233860 MtrunA17_Chr6g0465981 25.776 322 212 9 254 571 67 365 9.40e-23 101
Msa0233860 MtrunA17_Chr6g0465871 25.776 322 212 9 254 571 67 365 9.40e-23 101
Msa0233860 MtrunA17_Chr6g0466081 25.776 322 212 9 254 571 67 365 9.40e-23 101
Msa0233860 MtrunA17_Chr3g0109011 25.355 422 274 12 261 669 10 403 9.77e-23 102
Msa0233860 MtrunA17_Chr3g0109001 25.175 429 267 13 261 669 35 429 9.78e-23 103
Msa0233860 MtrunA17_Chr3g0108971 24.586 423 276 12 261 669 10 403 1.04e-22 102
Msa0233860 MtrunA17_Chr3g0099031 25.238 420 277 12 261 669 35 428 1.26e-22 102
Msa0233860 MtrunA17_Chr6g0465931 25.776 322 212 9 254 571 32 330 1.26e-22 100
Msa0233860 MtrunA17_Chr3g0108991 24.586 423 276 12 261 669 35 428 1.49e-22 102
Msa0233860 MtrunA17_Chr3g0108951 24.586 423 276 12 261 669 35 428 1.49e-22 102
Msa0233860 MtrunA17_Chr2g0280581 24.812 399 265 10 240 628 13 386 2.56e-22 101
Msa0233860 MtrunA17_Chr7g0236971 25.970 335 221 9 349 675 1 316 3.74e-22 99.8
Msa0233860 MtrunA17_Chr3g0109031 24.000 425 276 10 261 669 35 428 1.28e-21 99.4
Msa0233860 MtrunA17_Chr7g0236951 25.862 290 191 8 254 542 12 278 4.35e-21 95.1
Msa0233860 MtrunA17_Chr7g0237031 25.517 290 192 7 254 542 12 278 6.38e-21 94.7
Msa0233860 MtrunA17_Chr6g0477121 26.891 238 164 6 440 669 111 346 1.10e-18 89.7
Msa0233860 MtrunA17_Chr7g0217361 28.163 245 166 6 465 702 11 252 4.93e-17 82.8
Msa0233860 MtrunA17_Chr5g0445511 26.289 194 128 4 346 538 3 182 1.21e-12 68.6
Msa0233860 MtrunA17_Chr2g0319081 25.472 212 154 2 465 673 141 351 3.02e-12 69.7
Msa0233860 MtrunA17_Chr6g0466031 24.294 177 128 3 503 675 1 175 3.61e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233860 AT1G61120.1 47.375 781 366 17 12 760 16 783 0.0 673
Msa0233860 AT1G79460.1 29.723 757 485 18 33 767 54 785 5.11e-91 303
Msa0233860 AT4G02780.1 28.485 495 326 14 30 511 113 592 1.58e-44 172
Msa0233860 AT4G16740.1 26.872 454 293 12 254 697 77 501 4.01e-35 142
Msa0233860 AT4G16730.2 25.814 430 271 11 257 669 1 399 5.30e-35 140
Msa0233860 AT4G16730.1 25.701 428 280 10 254 669 44 445 7.04e-35 140
Msa0233860 AT3G25820.1 25.874 429 281 13 254 671 99 501 1.89e-30 128
Msa0233860 AT3G25830.1 25.874 429 281 13 254 671 99 501 1.89e-30 128
Msa0233860 AT1G33750.1 23.608 521 352 12 251 759 115 601 4.64e-30 127
Msa0233860 AT2G24210.1 23.721 430 287 11 254 671 98 498 1.34e-28 122
Msa0233860 AT3G25810.1 25.814 430 281 12 254 671 100 503 1.39e-28 122
Msa0233860 AT1G70080.1 26.230 427 278 11 256 671 121 521 1.43e-26 116
Msa0233860 AT1G61680.1 24.547 497 320 13 185 669 34 487 1.49e-26 115
Msa0233860 AT1G31950.3 23.327 523 350 14 251 757 115 602 3.36e-26 114
Msa0233860 AT1G31950.1 23.327 523 350 14 251 757 114 601 3.53e-26 114
Msa0233860 AT3G14490.1 23.413 504 343 14 249 741 108 579 3.54e-26 114
Msa0233860 AT1G61680.2 24.346 497 314 14 185 669 34 480 7.91e-26 113
Msa0233860 AT4G16740.2 26.331 357 229 8 221 569 47 377 3.44e-25 109
Msa0233860 AT3G14540.1 25.828 453 280 15 303 734 153 570 6.68e-25 110
Msa0233860 AT3G32030.1 23.553 501 322 17 254 734 116 575 6.81e-25 110
Msa0233860 AT5G44630.1 26.498 434 277 16 249 669 62 466 1.71e-23 106
Msa0233860 AT1G31950.2 24.601 439 286 13 251 675 115 522 5.18e-23 104
Msa0233860 AT4G16740.4 27.778 288 180 6 254 536 77 341 6.22e-23 102
Msa0233860 AT4G16740.3 27.778 288 180 6 254 536 77 341 6.22e-23 102
Msa0233860 AT3G14540.2 26.684 386 231 14 303 667 153 507 9.79e-23 103
Msa0233860 AT3G14520.1 25.111 450 287 15 303 734 156 573 9.80e-23 103
Msa0233860 AT3G29410.1 23.092 511 339 14 247 741 110 582 8.75e-22 100
Msa0233860 AT3G29410.2 23.092 511 339 14 247 741 5 477 1.30e-21 99.8
Msa0233860 AT4G15870.1 23.491 464 295 13 231 675 91 513 3.72e-21 99.0
Msa0233860 AT5G23960.1 23.144 458 312 13 307 751 107 537 1.76e-20 96.7
Msa0233860 AT4G13300.1 24.651 430 277 14 254 669 66 462 1.88e-20 96.7
Msa0233860 AT5G48110.1 25.620 242 174 4 436 673 15 254 3.81e-20 93.2
Msa0233860 AT3G25820.2 25.833 360 232 12 254 604 99 432 6.25e-20 94.0
Msa0233860 AT5G23960.2 22.173 451 323 10 307 751 107 535 6.08e-19 91.7
Msa0233860 AT4G13280.2 23.923 418 265 13 269 669 81 462 3.64e-18 89.4
Msa0233860 AT4G20230.1 26.531 392 223 16 348 710 199 554 3.63e-17 86.3
Msa0233860 AT4G20230.2 26.531 392 223 16 348 710 211 566 4.22e-17 86.3
Msa0233860 AT3G25820.4 26.644 289 182 9 254 536 99 363 1.35e-16 83.2
Msa0233860 AT3G25820.3 26.644 289 182 9 254 536 99 363 1.35e-16 83.2
Msa0233860 AT2G23230.1 24.713 348 233 8 336 675 183 509 1.89e-16 84.0
Msa0233860 AT3G29190.1 23.155 393 272 12 287 669 138 510 2.18e-16 84.0
Msa0233860 AT2G23230.2 24.713 348 238 8 336 675 183 514 7.66e-16 82.0
Msa0233860 AT4G20200.1 21.689 438 305 12 248 675 110 519 1.00e-15 81.6
Msa0233860 AT4G20210.1 24.528 424 278 15 254 665 112 505 1.59e-15 81.3
Msa0233860 AT4G13280.1 25.070 355 214 12 269 607 81 399 5.39e-14 75.9
Msa0233860 AT1G66020.1 21.633 490 346 13 231 710 87 548 1.18e-13 75.1
Msa0233860 AT1G66020.2 21.935 310 215 6 231 537 87 372 4.97e-12 69.3

Find 162 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACCGGAGCTACCATATT+TGG 0.130189 2_2:-6269850 Msa0233860:three_prime_UTR
CATAGGTTGTGAAGGATATT+TGG 0.182114 2_2:+6276987 None:intergenic
GCTACAGTATGTTTCTTCTT+TGG 0.183224 2_2:+6270135 None:intergenic
AACATTTGAAGTGATAAATT+TGG 0.189364 2_2:+6269898 None:intergenic
AAAATGCGGCATTAGTAATA+TGG 0.216922 2_2:-6272028 Msa0233860:CDS
ATTGCTTTAACTCAAAGTTT+AGG 0.228388 2_2:+6272198 None:intergenic
CTACAGTATGTTTCTTCTTT+GGG 0.231751 2_2:+6270136 None:intergenic
GAATCTTCAATATCAAATTC+AGG 0.249177 2_2:+6270405 None:intergenic
TTGCTTTAACTCAAAGTTTA+GGG 0.257135 2_2:+6272199 None:intergenic
AGGGAAATTGAATTCTGTTT+TGG 0.274790 2_2:-6270445 Msa0233860:CDS
TAGGGTATCATATCTTTATA+AGG 0.279006 2_2:-6272243 Msa0233860:CDS
CATATTCTCCACTGAACATT+AGG 0.283533 2_2:+6273821 None:intergenic
GCAAAAGCATTCATGGCTTA+TGG 0.288077 2_2:-6275969 Msa0233860:CDS
TTATTATGAAAACCTGCTTT+TGG 0.289154 2_2:+6275900 None:intergenic
TCAGAAACCTCAAGGGTATT+GGG 0.304489 2_2:-6276932 Msa0233860:CDS
ATGAATCCAAACCCGACTTT+AGG 0.306213 2_2:+6270042 None:intergenic
GTAAATAGGCAAGGCATTCT+TGG 0.313100 2_2:+6275943 None:intergenic
ATGAGCTGAAGGAACTAAAT+AGG 0.318092 2_2:-6272163 Msa0233860:intron
CATCATATGTTCCTTCTTGT+TGG 0.318946 2_2:+6271273 None:intergenic
TGGTCTTAGCTTTAGTTTCT+CGG 0.326815 2_2:+6270961 None:intergenic
TGCCACTGCAAAAGCATTCA+TGG 0.336759 2_2:-6275976 Msa0233860:CDS
AAGGAAAGATGTCATATAAT+AGG 0.341480 2_2:-6272607 Msa0233860:intron
CAAAGATTCCAATCCAAATA+TGG 0.341794 2_2:+6269837 None:intergenic
TGAAAGATGATTGCCCTCTT+TGG 0.349869 2_2:-6276567 Msa0233860:CDS
CATGGCTCATAGAGGCAAAA+TGG 0.350403 2_2:-6271099 Msa0233860:CDS
TGTTCAACAATTATTTAGAT+TGG 0.352848 2_2:-6276966 Msa0233860:CDS
TTGTGCCAAGGACTGTAAAT+AGG 0.357692 2_2:+6275929 None:intergenic
GCTTCAAGGTATGACATTAA+TGG 0.359062 2_2:+6276077 None:intergenic
ATCCTACTATTATGTTTGAA+TGG 0.363784 2_2:+6270093 None:intergenic
TTGCAGTGGCAGAGGGAGAT+TGG 0.371465 2_2:+6275988 None:intergenic
ATCAGAAACCTCAAGGGTAT+TGG 0.372745 2_2:-6276933 Msa0233860:CDS
AAAGAGAAGTTAATGCTCTA+TGG 0.374299 2_2:-6272631 Msa0233860:CDS
CATGCTGTATCGTAAGTAGA+AGG 0.377513 2_2:+6277030 None:intergenic
ATGACACCTAAAGTCGGGTT+TGG 0.382305 2_2:-6270048 Msa0233860:CDS
TCCTACTATTATGTTTGAAT+GGG 0.387774 2_2:+6270094 None:intergenic
TCCAGCAACAATTGTTTCAA+TGG 0.388095 2_2:-6276884 Msa0233860:CDS
TAATTGTAGGAAATATAATA+AGG 0.397184 2_2:-6274142 Msa0233860:intron
AAATGCGGCATTAGTAATAT+GGG 0.402452 2_2:-6272027 Msa0233860:CDS
CGGATTGGGCGAGTACTTTG+TGG 0.403464 2_2:-6275715 Msa0233860:CDS
GAGGCAAAATGGAGCAGAAA+TGG 0.404071 2_2:-6271088 Msa0233860:CDS
ATGATTTCTTTGACGAGATC+GGG 0.405860 2_2:-6271885 Msa0233860:CDS
ACCATTGAAACAATTGTTGC+TGG 0.407258 2_2:+6276883 None:intergenic
AAATTTATTGCTAGCTAAAG+AGG 0.408867 2_2:+6269954 None:intergenic
TAACTTTGCTGTGGCTGCTT+AGG 0.411912 2_2:+6271345 None:intergenic
CCTTGCCTATTTACAGTCCT+TGG 0.413177 2_2:-6275934 Msa0233860:CDS
ACACATAACAAAACTACTAA+TGG 0.414652 2_2:-6270933 Msa0233860:CDS
ATTTGACTCTAATACAGAAT+TGG 0.417938 2_2:-6270229 Msa0233860:CDS
GGCATTAGTAATATGGGGTT+TGG 0.418657 2_2:-6272021 Msa0233860:CDS
AATTTATCACTTCAAATGTT+AGG 0.419611 2_2:-6269895 Msa0233860:three_prime_UTR
CAATGGTTGCACTCATTAAG+TGG 0.423310 2_2:-6276867 Msa0233860:CDS
TCCCATTCAAACATAATAGT+AGG 0.423512 2_2:-6270095 Msa0233860:CDS
GCTGTGGCTGCTTAGGCCTA+TGG 0.424826 2_2:+6271352 None:intergenic
TTCAATTGGCTCACATGTCT+TGG 0.427006 2_2:-6271023 Msa0233860:CDS
GGCAAGTCAATGGTAGATAA+AGG 0.427997 2_2:-6276838 Msa0233860:intron
CTTGAACTTGTTCTAACTGA+TGG 0.428046 2_2:-6270336 Msa0233860:CDS
TCCACTGAACATTAGGTTTG+AGG 0.430775 2_2:+6273828 None:intergenic
AAAACAGGCATGACTTCAAT+TGG 0.431658 2_2:-6271037 Msa0233860:CDS
CCTTATCTTGCATCGAGCGT+AGG 0.435177 2_2:-6277113 Msa0233860:CDS
AGGTGTCATGAACCTCATTC+CGG 0.438889 2_2:+6270062 None:intergenic
GATGATTTCTTTGACGAGAT+CGG 0.441066 2_2:-6271886 Msa0233860:CDS
AATCTTCAATATCAAATTCA+GGG 0.444225 2_2:+6270406 None:intergenic
CGGAGCTACCATATTTGGAT+TGG 0.444634 2_2:-6269845 Msa0233860:three_prime_UTR
GGAACATATGATGATATCTC+TGG 0.449878 2_2:-6271263 Msa0233860:CDS
TTTCCGACGGTTAGCAATGT+AGG 0.451718 2_2:+6276453 None:intergenic
CCAATCCGAACTTCTGTAGT+TGG 0.454333 2_2:+6275730 None:intergenic
CAAGATAAGGGAAGCTCCAT+TGG 0.454714 2_2:+6277126 None:intergenic
GCAGCTTCAGAAAGATAGTC+TGG 0.455049 2_2:-6274079 Msa0233860:CDS
TTTAAGTCAAATAAAAGAAG+AGG 0.455991 2_2:-6270020 Msa0233860:exon
CTTGAGAAGATCGTTTCAAC+AGG 0.456467 2_2:-6273763 Msa0233860:CDS
GAATGATGTGGAGAGTTATC+AGG 0.458402 2_2:-6270894 Msa0233860:intron
ATTGATGCTTACCTGAAAAC+AGG 0.469227 2_2:-6271052 Msa0233860:CDS
CCTACGCTCGATGCAAGATA+AGG 0.471796 2_2:+6277113 None:intergenic
CAATCCAAATATGGTAGCTC+CGG 0.474024 2_2:+6269846 None:intergenic
ATGTGTAGGGAGGAAGTTGT+GGG 0.474833 2_2:-6276119 Msa0233860:intron
CTACGCTCGATGCAAGATAA+GGG 0.479211 2_2:+6277114 None:intergenic
CTTTAAATCCATGTGTCCTC+AGG 0.480013 2_2:+6274046 None:intergenic
CATGTGTAGGGAGGAAGTTG+TGG 0.481632 2_2:-6276120 Msa0233860:intron
CAACTACAGAAGTTCGGATT+GGG 0.483161 2_2:-6275729 Msa0233860:CDS
AACAGCAAAGTAACAATAAG+TGG 0.483753 2_2:+6271987 None:intergenic
GGATTGGGCGAGTACTTTGT+GGG 0.488972 2_2:-6275714 Msa0233860:CDS
GCTAACCAACTACAGAAGTT+CGG 0.490772 2_2:-6275735 Msa0233860:CDS
AAGATCGTTTCAACAGGAAA+AGG 0.490947 2_2:-6273757 Msa0233860:CDS
TTAATATGATCCTCATCCAT+TGG 0.492841 2_2:+6275768 None:intergenic
CTTATCTTGCATCGAGCGTA+GGG 0.492852 2_2:-6277112 Msa0233860:CDS
TCTAAATAATTGTTGAACAT+AGG 0.493040 2_2:+6276970 None:intergenic
TGAAGTTGTTTGCTAGGCTT+AGG 0.493963 2_2:+6270300 None:intergenic
GACAGATGAAGTTGTTTGCT+AGG 0.495560 2_2:+6270294 None:intergenic
AAACTCTACTCTTATCAAAC+CGG 0.497945 2_2:-6269865 Msa0233860:three_prime_UTR
ATGATGGAGGCAAAGCTTCA+AGG 0.499658 2_2:+6276063 None:intergenic
CTTAGCTTTAGTTTCTCGGT+TGG 0.509253 2_2:+6270965 None:intergenic
CCTTGCTTAAATATTTCCAA+TGG 0.509970 2_2:-6277142 Msa0233860:exon
TGCTCTTCACAAAGTCATCA+AGG 0.511611 2_2:-6276486 Msa0233860:CDS
CTACAGAAGGAAAAGGAAGA+AGG 0.514465 2_2:-6270465 Msa0233860:intron
TGTGGTTCTACAGAAGGAAA+AGG 0.516375 2_2:-6270472 Msa0233860:intron
GCACAAAGATGCCCAAAAGC+AGG 0.519327 2_2:-6275912 Msa0233860:intron
TTCTGTGTTCTAAATGATCC+AGG 0.519521 2_2:+6272666 None:intergenic
TGTGAAGGATATTTGGAATG+AGG 0.521871 2_2:+6276994 None:intergenic
CCAACTACAGAAGTTCGGAT+TGG 0.526247 2_2:-6275730 Msa0233860:CDS
TTGTCGTTTGTTGAATGATG+TGG 0.532264 2_2:-6270906 Msa0233860:CDS
TGACTCTAATACAGAATTGG+TGG 0.533110 2_2:-6270226 Msa0233860:CDS
ATCATTTAGAACACAGAATG+TGG 0.538310 2_2:-6272661 Msa0233860:CDS
GTGGAACACTGGCAAGTCAA+TGG 0.541073 2_2:-6276848 Msa0233860:CDS
TGTAAGAATTTGAGTGCAGA+TGG 0.541954 2_2:-6276020 Msa0233860:CDS
TTTCCTTTCATGGCTCATAG+AGG 0.544678 2_2:-6271107 Msa0233860:CDS
CACTTTGTAGTTCTATTCAA+AGG 0.544957 2_2:+6270177 None:intergenic
GAAGTTAATGCTCTATGGAA+AGG 0.546902 2_2:-6272626 Msa0233860:CDS
TTCAGGTAAGCATCAATGGA+TGG 0.547442 2_2:+6271058 None:intergenic
TTTGAGCTCCTGAGGACACA+TGG 0.549094 2_2:-6274054 Msa0233860:CDS
GGTTCATGACACCTAAAGTC+GGG 0.550377 2_2:-6270053 Msa0233860:CDS
CTCTCTCCCCAATACCCTTG+AGG 0.551295 2_2:+6276925 None:intergenic
TCATCCATTGGATATGCTTG+TGG 0.552431 2_2:+6275780 None:intergenic
ACAAAATATCTCCAACAAGA+AGG 0.552778 2_2:-6271284 Msa0233860:CDS
TCAGCAAGTTCAATCATAGC+AGG 0.565317 2_2:+6276529 None:intergenic
TTGTTGAACATAGGTTGTGA+AGG 0.566121 2_2:+6276979 None:intergenic
TACAGAAGGAAAAGGAAGAA+GGG 0.570165 2_2:-6270464 Msa0233860:intron
CAGAAACCTCAAGGGTATTG+GGG 0.575697 2_2:-6276931 Msa0233860:CDS
TTCTTACAGATGCTGTTCAA+AGG 0.575895 2_2:-6271843 Msa0233860:intron
TAATAAGGAGCAAAATTCGC+GGG 0.576368 2_2:-6274127 Msa0233860:CDS
TTGCCTCTATGAGCCATGAA+AGG 0.576497 2_2:+6271104 None:intergenic
GGATAAATCTCACCGGAATG+AGG 0.576982 2_2:-6270074 Msa0233860:CDS
AGAACAATAGCTAGCCAAAG+AGG 0.583805 2_2:+6276553 None:intergenic
CAAGGGTATTGGGGAGAGAG+TGG 0.585047 2_2:-6276922 Msa0233860:CDS
GATTTCAGAAAACATGAGGA+TGG 0.586093 2_2:+6270995 None:intergenic
TTGAAACAATTGTTGCTGGA+AGG 0.586125 2_2:+6276887 None:intergenic
TGATCCAGGCGAGCAAACCA+TGG 0.591379 2_2:+6272680 None:intergenic
CTCTAATACAGAATTGGTGG+AGG 0.591399 2_2:-6270223 Msa0233860:CDS
TACCTCATGACTCTTACATA+CGG 0.591894 2_2:-6271948 Msa0233860:CDS
AGGATGCTTAGAACTACGAC+AGG 0.592122 2_2:-6273737 Msa0233860:intron
AATAATAGATGGGATGCCAT+AGG 0.597933 2_2:-6271368 Msa0233860:intron
ACAAGCATATCCAATGGATG+AGG 0.598100 2_2:-6275778 Msa0233860:CDS
TCAAGGTATGACATTAATGG+AGG 0.599091 2_2:+6276080 None:intergenic
CTCAACAATCAGAAACCTCA+AGG 0.599586 2_2:-6276940 Msa0233860:CDS
GTCTGGCATTTGAGCTCCTG+AGG 0.601523 2_2:-6274062 Msa0233860:CDS
TTAAGTCAAATAAAAGAAGA+GGG 0.602495 2_2:-6270019 Msa0233860:exon
TATGTAAGAGTCATGAGGTA+GGG 0.606873 2_2:+6271951 None:intergenic
GAACTTGCTGATGATACCAT+GGG 0.607933 2_2:-6276517 Msa0233860:CDS
ATAATAAGGAGCAAAATTCG+CGG 0.610941 2_2:-6274128 Msa0233860:CDS
GTATGTAAGAGTCATGAGGT+AGG 0.613549 2_2:+6271950 None:intergenic
ATGCTGTATCGTAAGTAGAA+GGG 0.615661 2_2:+6277031 None:intergenic
AATGCGGCATTAGTAATATG+GGG 0.615820 2_2:-6272026 Msa0233860:CDS
TGAACTTGCTGATGATACCA+TGG 0.616184 2_2:-6276518 Msa0233860:CDS
GCCTCAAACCTAATGTTCAG+TGG 0.616847 2_2:-6273829 Msa0233860:CDS
GCTTGATTTCAGAAAACATG+AGG 0.619314 2_2:+6270991 None:intergenic
CCAAGGACTGTAAATAGGCA+AGG 0.619880 2_2:+6275934 None:intergenic
GCACTCATTAAGTGGAACAC+TGG 0.620160 2_2:-6276859 Msa0233860:CDS
GAACAATAGCTAGCCAAAGA+GGG 0.622312 2_2:+6276554 None:intergenic
GTGTAGGGAGGAAGTTGTGG+GGG 0.623092 2_2:-6276117 Msa0233860:intron
CCATTGGAAATATTTAAGCA+AGG 0.630402 2_2:+6277142 None:intergenic
AGGTTCATGACACCTAAAGT+CGG 0.633088 2_2:-6270054 Msa0233860:CDS
TGTGTAGGGAGGAAGTTGTG+GGG 0.635710 2_2:-6276118 Msa0233860:intron
CAGTGGAGAATATGAACTCG+AGG 0.636686 2_2:-6273812 Msa0233860:CDS
AGTTCCACAAGCATATCCAA+TGG 0.636749 2_2:-6275784 Msa0233860:CDS
AATAGTAGGATAAATCTCAC+CGG 0.637709 2_2:-6270081 Msa0233860:CDS
GGAATGATATAAGATAAATG+TGG 0.645632 2_2:-6269998 Msa0233860:three_prime_UTR
TGTCCTACATTGCTAACCGT+CGG 0.648058 2_2:-6276456 Msa0233860:CDS
CAAGGTATGACATTAATGGA+GGG 0.648059 2_2:+6276081 None:intergenic
GAAGAGCACATCTAAACCCA+TGG 0.650278 2_2:+6276501 None:intergenic
GCTCTTCACAAAGTCATCAA+GGG 0.658536 2_2:-6276485 Msa0233860:CDS
CTTCTACTTACGATACAGCA+TGG 0.667628 2_2:-6277029 Msa0233860:CDS
ATCCGTATGTAAGAGTCATG+AGG 0.677897 2_2:+6271946 None:intergenic
TCAACAATCAGAAACCTCAA+GGG 0.692292 2_2:-6276939 Msa0233860:CDS
CATCAAATATAACTTTGCTG+TGG 0.708475 2_2:+6271336 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATAAAATTAAAAATT+AGG + chr2_2:6271836-6271855 None:intergenic 0.0%
!! ATATTGAATATTATTTAACT+TGG + chr2_2:6270682-6270701 None:intergenic 10.0%
!! TATACAAATGAAATTTAATT+AGG - chr2_2:6271288-6271307 Msa0233860:CDS 10.0%
!! ATACAAATGAAATTTAATTA+GGG - chr2_2:6271289-6271308 Msa0233860:CDS 10.0%
!! TTATTGAAATTTACTAAAAA+TGG + chr2_2:6271799-6271818 None:intergenic 10.0%
!!! AACATTCTATTTTATTTTTT+AGG - chr2_2:6272437-6272456 Msa0233860:intron 10.0%
!!! ACATTCTATTTTATTTTTTA+GGG - chr2_2:6272438-6272457 Msa0233860:intron 10.0%
!! TGAAATAAAATAAAAACAAA+AGG + chr2_2:6272633-6272652 None:intergenic 10.0%
!! AGAATAAAATATAAAAAATG+GGG + chr2_2:6273839-6273858 None:intergenic 10.0%
!! CAGAATAAAATATAAAAAAT+GGG + chr2_2:6273840-6273859 None:intergenic 10.0%
!! TCAGAATAAAATATAAAAAA+TGG + chr2_2:6273841-6273860 None:intergenic 10.0%
!! AATTGTTTAATAAAAAACTA+TGG - chr2_2:6273978-6273997 Msa0233860:intron 10.0%
!! AAGAAAAAAGATATTATTAA+GGG + chr2_2:6274058-6274077 None:intergenic 10.0%
!! AAAGAAAAAAGATATTATTA+AGG + chr2_2:6274059-6274078 None:intergenic 10.0%
!!! AAATGATATTATCTTTTAAT+TGG + chr2_2:6274085-6274104 None:intergenic 10.0%
!!! ATTTCATTTTTTTATTAACA+AGG - chr2_2:6274629-6274648 Msa0233860:intron 10.0%
!!! TTTCATTTTTTTATTAACAA+GGG - chr2_2:6274630-6274649 Msa0233860:intron 10.0%
!! ATATGGTAAAAAATAATTAT+TGG + chr2_2:6274791-6274810 None:intergenic 10.0%
!! ATAAAAAATATCTAATAACA+TGG + chr2_2:6275276-6275295 None:intergenic 10.0%
!! TTATGATTTATTGAATTTGT+AGG - chr2_2:6270281-6270300 Msa0233860:CDS 15.0%
!! ATATTATTTAGAGATAATTG+AGG - chr2_2:6270655-6270674 Msa0233860:intron 15.0%
!!! TAGTTTAATTTTTAACTTCT+AGG + chr2_2:6271589-6271608 None:intergenic 15.0%
!!! GTAAAACAAAAAAATTTGTT+AGG + chr2_2:6272193-6272212 None:intergenic 15.0%
!! TAAATGTTGAACATAATAAA+CGG - chr2_2:6272303-6272322 Msa0233860:intron 15.0%
!! ACAAAATAAAAAAATTTGTG+AGG - chr2_2:6272409-6272428 Msa0233860:intron 15.0%
!!! TCAAAATTTGCTATATTTAT+AGG - chr2_2:6272467-6272486 Msa0233860:intron 15.0%
!!! CAAAATTTGCTATATTTATA+GGG - chr2_2:6272468-6272487 Msa0233860:intron 15.0%
!!! TATGTGATGATTTTTTTTAA+GGG + chr2_2:6272577-6272596 None:intergenic 15.0%
!!! TTATGTGATGATTTTTTTTA+AGG + chr2_2:6272578-6272597 None:intergenic 15.0%
!! TAAAAAAAATCATCACATAA+TGG - chr2_2:6272578-6272597 Msa0233860:intron 15.0%
!! AAAAAAAATCATCACATAAT+GGG - chr2_2:6272579-6272598 Msa0233860:intron 15.0%
!!! TTATTTTATTTCAAAAGTAC+AGG - chr2_2:6272640-6272659 Msa0233860:CDS 15.0%
!! GATTGTATTTAATTAATTGT+AGG - chr2_2:6272760-6272779 Msa0233860:intron 15.0%
!! TAATTGTAGGAAATATAATA+AGG - chr2_2:6272773-6272792 Msa0233860:intron 15.0%
!! TTTAAAAGTTTATAAAAAGG+TGG + chr2_2:6273283-6273302 None:intergenic 15.0%
!!! TTAATAATTTAATGCTTTTC+TGG - chr2_2:6273357-6273376 Msa0233860:intron 15.0%
!! GAAAGATTATGAAATTAAAT+AGG - chr2_2:6273487-6273506 Msa0233860:intron 15.0%
!! ATATAAAAAATAATTGTGGT+AGG - chr2_2:6273560-6273579 Msa0233860:intron 15.0%
!! AATTAAGATTCAAACTTTAT+TGG + chr2_2:6273754-6273773 None:intergenic 15.0%
!! AATCTTAATTGATAAATGTA+TGG - chr2_2:6273764-6273783 Msa0233860:CDS 15.0%
!! ATTCAACTAAAAAATATTAG+GGG + chr2_2:6273932-6273951 None:intergenic 15.0%
!! GATTCAACTAAAAAATATTA+GGG + chr2_2:6273933-6273952 None:intergenic 15.0%
!! AGATTCAACTAAAAAATATT+AGG + chr2_2:6273934-6273953 None:intergenic 15.0%
!! TAACACTTAATTTCTTAATA+TGG + chr2_2:6274808-6274827 None:intergenic 15.0%
!!! TTTCTTTTTCAAATAATAGA+TGG - chr2_2:6275536-6275555 Msa0233860:intron 15.0%
!!! TTCTTTTTCAAATAATAGAT+GGG - chr2_2:6275537-6275556 Msa0233860:intron 15.0%
!! ACTATATAGATAGATAAATT+TGG + chr2_2:6275704-6275723 None:intergenic 15.0%
!!! AAAACTAGATTTTAAAATTG+AGG + chr2_2:6276137-6276156 None:intergenic 15.0%
!! TCTAAATAATTGTTGAACAT+AGG + chr2_2:6269948-6269967 None:intergenic 20.0%
!! TGTTCAACAATTATTTAGAT+TGG - chr2_2:6269949-6269968 Msa0233860:three_prime_UTR 20.0%
!! AACCCTAAATCAAAAATATT+TGG - chr2_2:6270187-6270206 Msa0233860:CDS 20.0%
!!! GTCCAAATATTTTTGATTTA+GGG + chr2_2:6270192-6270211 None:intergenic 20.0%
!!! TGTCCAAATATTTTTGATTT+AGG + chr2_2:6270193-6270212 None:intergenic 20.0%
!!! TCTTTTTCATTTACATATGA+TGG + chr2_2:6270871-6270890 None:intergenic 20.0%
!! AAATCAAAATGTTCAAAAGT+AGG - chr2_2:6271068-6271087 Msa0233860:CDS 20.0%
!! TAAGACTAATAATAAGAGAT+AGG - chr2_2:6271956-6271975 Msa0233860:CDS 20.0%
!! AAGACTAATAATAAGAGATA+GGG - chr2_2:6271957-6271976 Msa0233860:CDS 20.0%
!!! ATATCTTTGCATTACATTTT+TGG - chr2_2:6272089-6272108 Msa0233860:intron 20.0%
!!! TATCTTTGCATTACATTTTT+GGG - chr2_2:6272090-6272109 Msa0233860:intron 20.0%
!! ATGTCAAAATTATATCCATT+AGG + chr2_2:6272224-6272243 None:intergenic 20.0%
!! ACATTCATATGAACATAAAT+TGG - chr2_2:6272370-6272389 Msa0233860:intron 20.0%
!! TGAACATAAATTGGTTATTA+AGG - chr2_2:6272379-6272398 Msa0233860:intron 20.0%
!! AAAAACGAGTTAAAAAATGT+AGG + chr2_2:6272510-6272529 None:intergenic 20.0%
!!! GAATTTTAATCATCACATAA+TGG - chr2_2:6272547-6272566 Msa0233860:intron 20.0%
!!! TTGATATCAAACTTTTTTAG+AGG + chr2_2:6272704-6272723 None:intergenic 20.0%
!! TATGAAATTAAGATCATACA+TGG + chr2_2:6272900-6272919 None:intergenic 20.0%
!!! TTTTATATATACATGCAGTA+CGG - chr2_2:6272973-6272992 Msa0233860:intron 20.0%
!! TCATAATCTTTCAAGAATAT+GGG + chr2_2:6273479-6273498 None:intergenic 20.0%
!! TTCATAATCTTTCAAGAATA+TGG + chr2_2:6273480-6273499 None:intergenic 20.0%
!!! TTGTAGAATATTTGGTTTTT+TGG - chr2_2:6273883-6273902 Msa0233860:CDS 20.0%
!!! TATTCTATGTTTTTCAACTA+TGG - chr2_2:6273953-6273972 Msa0233860:intron 20.0%
!!! GTTTAATGTAAAGATTTTCA+TGG - chr2_2:6274179-6274198 Msa0233860:intron 20.0%
!! CATAACAAGTTAAATCAATA+TGG + chr2_2:6276415-6276434 None:intergenic 20.0%
!! AATCTTCAATATCAAATTCA+GGG + chr2_2:6276512-6276531 None:intergenic 20.0%
!!! ATTAGAGTCAAATCTATTTT+TGG + chr2_2:6276679-6276698 None:intergenic 20.0%
!! TTTAAGTCAAATAAAAGAAG+AGG - chr2_2:6276895-6276914 Msa0233860:CDS 20.0%
!! TTAAGTCAAATAAAAGAAGA+GGG - chr2_2:6276896-6276915 Msa0233860:CDS 20.0%
!!! AACATTTGAAGTGATAAATT+TGG + chr2_2:6277020-6277039 None:intergenic 20.0%
!! AATTTATCACTTCAAATGTT+AGG - chr2_2:6277020-6277039 Msa0233860:CDS 20.0%
!!! CAAGTTTTGACATATTTGTA+TGG - chr2_2:6270122-6270141 Msa0233860:CDS 25.0%
! TAAAATGAGTTTAACTCAGT+TGG + chr2_2:6270242-6270261 None:intergenic 25.0%
! GATTTATTGAATTTGTAGGA+CGG - chr2_2:6270285-6270304 Msa0233860:CDS 25.0%
!! TTTTCATTTACATATGATGG+AGG + chr2_2:6270868-6270887 None:intergenic 25.0%
!!! TATTATGAAAACCTGCTTTT+GGG + chr2_2:6271017-6271036 None:intergenic 25.0%
!! TTATTATGAAAACCTGCTTT+TGG + chr2_2:6271018-6271037 None:intergenic 25.0%
!!! TATTTTTGGCACAAGTTTAT+AGG - chr2_2:6271235-6271254 Msa0233860:intron 25.0%
! ATGTGCAAATCTAACTATAT+CGG - chr2_2:6271385-6271404 Msa0233860:intron 25.0%
!!! TTTTAACTTCTAGGCAATTT+TGG + chr2_2:6271580-6271599 None:intergenic 25.0%
! AATTAAACTACTAGTGTGTT+TGG - chr2_2:6271599-6271618 Msa0233860:intron 25.0%
! AAATAATAAGAACTCCACTT+TGG - chr2_2:6271871-6271890 Msa0233860:CDS 25.0%
! GTTTATATCCAATCATGATA+GGG - chr2_2:6271979-6271998 Msa0233860:CDS 25.0%
! TGATAGGGTACAAAAATTTA+AGG - chr2_2:6271994-6272013 Msa0233860:CDS 25.0%
! GATAGGGTACAAAAATTTAA+GGG - chr2_2:6271995-6272014 Msa0233860:CDS 25.0%
! AAAACTATTTCACTCAAACT+TGG - chr2_2:6272066-6272085 Msa0233860:intron 25.0%
!!! GTTTTACTTTTGATTCCTAA+TGG - chr2_2:6272206-6272225 Msa0233860:CDS 25.0%
! CATAATAAACGGATATAACA+TGG - chr2_2:6272314-6272333 Msa0233860:intron 25.0%
! AAGGTGGCAATAAAATTATT+GGG + chr2_2:6273267-6273286 None:intergenic 25.0%
! AAAGGTGGCAATAAAATTAT+TGG + chr2_2:6273268-6273287 None:intergenic 25.0%
!!! TAATTGACTCACTTTTTTTC+TGG + chr2_2:6273612-6273631 None:intergenic 25.0%
! AAGGAAAGATGTCATATAAT+AGG - chr2_2:6274308-6274327 Msa0233860:intron 25.0%
! TCATATAATAGGTATACACA+TGG - chr2_2:6274319-6274338 Msa0233860:intron 25.0%
!! TTGTTTGTATTGTTCGATTT+TGG + chr2_2:6274418-6274437 None:intergenic 25.0%
! AACAGTTTAGATTTCATACT+CGG + chr2_2:6274500-6274519 None:intergenic 25.0%
!! TAAGCCAAATCTTTATTTGT+AGG - chr2_2:6274653-6274672 Msa0233860:intron 25.0%
!! AAGCCAAATCTTTATTTGTA+GGG - chr2_2:6274654-6274673 Msa0233860:intron 25.0%
! ATACCCTACAAATAAAGATT+TGG + chr2_2:6274660-6274679 None:intergenic 25.0%
!! TAGGGTATCATATCTTTATA+AGG - chr2_2:6274672-6274691 Msa0233860:intron 25.0%
! TTGCTTTAACTCAAAGTTTA+GGG + chr2_2:6274719-6274738 None:intergenic 25.0%
! ACATGTCATAGAAAGAAATA+TGG + chr2_2:6275100-6275119 None:intergenic 25.0%
!! CATGTATTCATTTGAAATGT+CGG - chr2_2:6275181-6275200 Msa0233860:intron 25.0%
! TAGTTTAAAAACTCAAGATG+TGG - chr2_2:6275478-6275497 Msa0233860:intron 25.0%
!!! AGTTTTGTTATGTGTTCATA+TGG + chr2_2:6275977-6275996 None:intergenic 25.0%
! ACACATAACAAAACTACTAA+TGG - chr2_2:6275982-6276001 Msa0233860:CDS 25.0%
!! CTTCAAGTTAATTGTAGTAT+TGG - chr2_2:6276080-6276099 Msa0233860:CDS 25.0%
!!! GGTGGATTTTATAATACAAA+AGG - chr2_2:6276254-6276273 Msa0233860:intron 25.0%
!! GATCCTTCAATAAGATTTTT+GGG + chr2_2:6276320-6276339 None:intergenic 25.0%
!!! CTCTTTTTAAAATCCGATTT+TGG + chr2_2:6276342-6276361 None:intergenic 25.0%
!!! ACTTGTTATGTTTTTTCATG+TGG - chr2_2:6276425-6276444 Msa0233860:intron 25.0%
! GAATCTTCAATATCAAATTC+AGG + chr2_2:6276513-6276532 None:intergenic 25.0%
! ATTTGACTCTAATACAGAAT+TGG - chr2_2:6276686-6276705 Msa0233860:intron 25.0%
! TCCTACTATTATGTTTGAAT+GGG + chr2_2:6276824-6276843 None:intergenic 25.0%
! ATCCTACTATTATGTTTGAA+TGG + chr2_2:6276825-6276844 None:intergenic 25.0%
! GGAATGATATAAGATAAATG+TGG - chr2_2:6276917-6276936 Msa0233860:CDS 25.0%
! AAATTTATTGCTAGCTAAAG+AGG + chr2_2:6276964-6276983 None:intergenic 25.0%
CCATTGGAAATATTTAAGCA+AGG + chr2_2:6269776-6269795 None:intergenic 30.0%
CCTTGCTTAAATATTTCCAA+TGG - chr2_2:6269773-6269792 Msa0233860:three_prime_UTR 30.0%
! TGTTAAGAAAACTTTTCCGA+CGG + chr2_2:6270478-6270497 None:intergenic 30.0%
TTAATATGATCCTCATCCAT+TGG + chr2_2:6271150-6271169 None:intergenic 30.0%
ATAGATTCTCATGTTCACAT+GGG + chr2_2:6271266-6271285 None:intergenic 30.0%
AATAGATTCTCATGTTCACA+TGG + chr2_2:6271267-6271286 None:intergenic 30.0%
GAAATTTAATTAGGGCCAAA+TGG - chr2_2:6271297-6271316 Msa0233860:CDS 30.0%
! CATATCAAACGATTTTTGTG+CGG - chr2_2:6271416-6271435 Msa0233860:intron 30.0%
AGCATTCTAATTTCAAACCT+TGG + chr2_2:6271463-6271482 None:intergenic 30.0%
GGTTTCAGATTCAAATCTAA+CGG + chr2_2:6271559-6271578 None:intergenic 30.0%
! AAATTCACTACAAAGTGTCA+TGG + chr2_2:6271656-6271675 None:intergenic 30.0%
ACCTCTAAACAATGAGTTAA+AGG - chr2_2:6271762-6271781 Msa0233860:intron 30.0%
ACCTTTAACTCATTGTTTAG+AGG + chr2_2:6271766-6271785 None:intergenic 30.0%
TCTAAACAATGAGTTAAAGG+TGG - chr2_2:6271765-6271784 Msa0233860:intron 30.0%
GGTTTATATCCAATCATGAT+AGG - chr2_2:6271978-6271997 Msa0233860:CDS 30.0%
! TTTTTGTACCCTATCATGAT+TGG + chr2_2:6271990-6272009 None:intergenic 30.0%
ATAATAAGGAGCAAAATTCG+CGG - chr2_2:6272787-6272806 Msa0233860:intron 30.0%
TATTCTGACCAACATTAGAT+CGG - chr2_2:6273853-6273872 Msa0233860:CDS 30.0%
GCTCTCTATTGTAGAATATT+TGG - chr2_2:6273875-6273894 Msa0233860:CDS 30.0%
!!! TGGTTTTTTGGATTAACCAA+CGG - chr2_2:6273895-6273914 Msa0233860:CDS 30.0%
CTAAAAAATATTAGGGGACT+GGG + chr2_2:6273926-6273945 None:intergenic 30.0%
ACTAAAAAATATTAGGGGAC+TGG + chr2_2:6273927-6273946 None:intergenic 30.0%
TCTCGATATATCATTGCTAA+AGG + chr2_2:6274152-6274171 None:intergenic 30.0%
! ATCATTTAGAACACAGAATG+TGG - chr2_2:6274254-6274273 Msa0233860:intron 30.0%
AAAGAGAAGTTAATGCTCTA+TGG - chr2_2:6274284-6274303 Msa0233860:intron 30.0%
!! AACTGTTCAATTTTGATCCA+AGG - chr2_2:6274513-6274532 Msa0233860:intron 30.0%
ATGAAATGTAGTACAGTTGA+AGG + chr2_2:6274616-6274635 None:intergenic 30.0%
GAAAATACGTATTTGACTCT+TGG - chr2_2:6274843-6274862 Msa0233860:intron 30.0%
AAAATGCGGCATTAGTAATA+TGG - chr2_2:6274887-6274906 Msa0233860:intron 30.0%
AAATGCGGCATTAGTAATAT+GGG - chr2_2:6274888-6274907 Msa0233860:intron 30.0%
AACAGCAAAGTAACAATAAG+TGG + chr2_2:6274931-6274950 None:intergenic 30.0%
CATCAAATATAACTTTGCTG+TGG + chr2_2:6275582-6275601 None:intergenic 30.0%
ACAAAATATCTCCAACAAGA+AGG - chr2_2:6275631-6275650 Msa0233860:intron 30.0%
! TAACATAAAACCTGCTGATT+TGG - chr2_2:6276217-6276236 Msa0233860:intron 30.0%
ATTATAAAATCCACCAAGAC+TGG + chr2_2:6276249-6276268 None:intergenic 30.0%
AGACCCAAAAATCTTATTGA+AGG - chr2_2:6276314-6276333 Msa0233860:intron 30.0%
! GGATCCTTCAATAAGATTTT+TGG + chr2_2:6276321-6276340 None:intergenic 30.0%
CTTATTGAAGGATCCAAAAT+CGG - chr2_2:6276326-6276345 Msa0233860:intron 30.0%
ATATGGACTTGATTACAGTT+TGG + chr2_2:6276398-6276417 None:intergenic 30.0%
! AGGGAAATTGAATTCTGTTT+TGG - chr2_2:6276470-6276489 Msa0233860:CDS 30.0%
! CACTTTGTAGTTCTATTCAA+AGG + chr2_2:6276741-6276760 None:intergenic 30.0%
CTACAGTATGTTTCTTCTTT+GGG + chr2_2:6276782-6276801 None:intergenic 30.0%
TCCCATTCAAACATAATAGT+AGG - chr2_2:6276820-6276839 Msa0233860:intron 30.0%
AATAGTAGGATAAATCTCAC+CGG - chr2_2:6276834-6276853 Msa0233860:intron 30.0%
AAACTCTACTCTTATCAAAC+CGG - chr2_2:6277050-6277069 Msa0233860:CDS 30.0%
CAAAGATTCCAATCCAAATA+TGG + chr2_2:6277081-6277100 None:intergenic 30.0%
ATGCTGTATCGTAAGTAGAA+GGG + chr2_2:6269887-6269906 None:intergenic 35.0%
! TGTGAAGGATATTTGGAATG+AGG + chr2_2:6269924-6269943 None:intergenic 35.0%
CATAGGTTGTGAAGGATATT+TGG + chr2_2:6269931-6269950 None:intergenic 35.0%
TTGTTGAACATAGGTTGTGA+AGG + chr2_2:6269939-6269958 None:intergenic 35.0%
TCAACAATCAGAAACCTCAA+GGG - chr2_2:6269976-6269995 Msa0233860:three_prime_UTR 35.0%
TTGAAACAATTGTTGCTGGA+AGG + chr2_2:6270031-6270050 None:intergenic 35.0%
TCCAGCAACAATTGTTTCAA+TGG - chr2_2:6270031-6270050 Msa0233860:exon 35.0%
ACCATTGAAACAATTGTTGC+TGG + chr2_2:6270035-6270054 None:intergenic 35.0%
! TGAGTTTAACTCAGTTGGTA+GGG + chr2_2:6270237-6270256 None:intergenic 35.0%
ATGAGTTTAACTCAGTTGGT+AGG + chr2_2:6270238-6270257 None:intergenic 35.0%
TATCATTGCATTGCATGTGT+AGG - chr2_2:6270782-6270801 Msa0233860:intron 35.0%
ATCATTGCATTGCATGTGTA+GGG - chr2_2:6270783-6270802 Msa0233860:intron 35.0%
CAAGGTATGACATTAATGGA+GGG + chr2_2:6270837-6270856 None:intergenic 35.0%
TCAAGGTATGACATTAATGG+AGG + chr2_2:6270838-6270857 None:intergenic 35.0%
GCTTCAAGGTATGACATTAA+TGG + chr2_2:6270841-6270860 None:intergenic 35.0%
TGTAAGAATTTGAGTGCAGA+TGG - chr2_2:6270895-6270914 Msa0233860:CDS 35.0%
!! GGGAGAGATTGAAGTATTTT+TGG - chr2_2:6271221-6271240 Msa0233860:intron 35.0%
ATCCAATTGCATTTGCCATT+TGG + chr2_2:6271315-6271334 None:intergenic 35.0%
TCTATAACAACAGCTGCATT+TGG - chr2_2:6271337-6271356 Msa0233860:CDS 35.0%
ATATCTAACAATTGTGCAGC+GGG + chr2_2:6271367-6271386 None:intergenic 35.0%
CATATCTAACAATTGTGCAG+CGG + chr2_2:6271368-6271387 None:intergenic 35.0%
!! ATTTGTTTCTACGGTAGGAA+TGG + chr2_2:6271722-6271741 None:intergenic 35.0%
!! GTAGCACACATTTGTTTCTA+CGG + chr2_2:6271731-6271750 None:intergenic 35.0%
AAACAATGAGTTAAAGGTGG+AGG - chr2_2:6271768-6271787 Msa0233860:intron 35.0%
AACAATGAGTTAAAGGTGGA+GGG - chr2_2:6271769-6271788 Msa0233860:intron 35.0%
TAATAAGGAGCAAAATTCGC+GGG - chr2_2:6272788-6272807 Msa0233860:intron 35.0%
CATATTCTCCACTGAACATT+AGG + chr2_2:6273097-6273116 None:intergenic 35.0%
!! AGGAAGCTAGAACTTTTTCT+AGG - chr2_2:6273123-6273142 Msa0233860:intron 35.0%
AAGATCGTTTCAACAGGAAA+AGG - chr2_2:6273158-6273177 Msa0233860:intron 35.0%
CAATGTTGACCCAATTTATG+AGG - chr2_2:6273447-6273466 Msa0233860:intron 35.0%
GGGTTGAATCCTCATAAATT+GGG + chr2_2:6273459-6273478 None:intergenic 35.0%
! TGGGTTGAATCCTCATAAAT+TGG + chr2_2:6273460-6273479 None:intergenic 35.0%
! GCTAAAGGCATAGATTATGA+AGG + chr2_2:6274137-6274156 None:intergenic 35.0%
! TTCTGTGTTCTAAATGATCC+AGG + chr2_2:6274252-6274271 None:intergenic 35.0%
GAAGTTAATGCTCTATGGAA+AGG - chr2_2:6274289-6274308 Msa0233860:intron 35.0%
CAATAGAAACGTGAATGCAT+TGG + chr2_2:6274450-6274469 None:intergenic 35.0%
AATTGGTACATAAGTGACCT+TGG + chr2_2:6274533-6274552 None:intergenic 35.0%
GATGTACAAAAATGAGCTGA+AGG - chr2_2:6274741-6274760 Msa0233860:intron 35.0%
ATGAGCTGAAGGAACTAAAT+AGG - chr2_2:6274752-6274771 Msa0233860:intron 35.0%
AATACGTATTTGACTCTTGG+TGG - chr2_2:6274846-6274865 Msa0233860:intron 35.0%
AATGCGGCATTAGTAATATG+GGG - chr2_2:6274889-6274908 Msa0233860:intron 35.0%
TATGTAAGAGTCATGAGGTA+GGG + chr2_2:6274967-6274986 None:intergenic 35.0%
TACCTCATGACTCTTACATA+CGG - chr2_2:6274967-6274986 Msa0233860:intron 35.0%
GATGATTTCTTTGACGAGAT+CGG - chr2_2:6275029-6275048 Msa0233860:intron 35.0%
ATGATTTCTTTGACGAGATC+GGG - chr2_2:6275030-6275049 Msa0233860:intron 35.0%
TTCTTACAGATGCTGTTCAA+AGG - chr2_2:6275072-6275091 Msa0233860:intron 35.0%
GACATGTATCATTGTCGTAT+CGG - chr2_2:6275113-6275132 Msa0233860:intron 35.0%
TGTTCAACATTGACACATGT+CGG - chr2_2:6275136-6275155 Msa0233860:intron 35.0%
AATAATAGATGGGATGCCAT+AGG - chr2_2:6275547-6275566 Msa0233860:intron 35.0%
CATCATATGTTCCTTCTTGT+TGG + chr2_2:6275645-6275664 None:intergenic 35.0%
GGAACATATGATGATATCTC+TGG - chr2_2:6275652-6275671 Msa0233860:intron 35.0%
!! AATGTGTGTCATTTGTGAAG+TGG - chr2_2:6275777-6275796 Msa0233860:CDS 35.0%
! GGTATGAAGTTTTCCTTTCA+TGG - chr2_2:6275798-6275817 Msa0233860:intron 35.0%
!!! TGTTTTCAGGTAAGCATCAA+TGG + chr2_2:6275864-6275883 None:intergenic 35.0%
ATTGATGCTTACCTGAAAAC+AGG - chr2_2:6275863-6275882 Msa0233860:intron 35.0%
AAAACAGGCATGACTTCAAT+TGG - chr2_2:6275878-6275897 Msa0233860:intron 35.0%
GATTTCAGAAAACATGAGGA+TGG + chr2_2:6275923-6275942 None:intergenic 35.0%
GCTTGATTTCAGAAAACATG+AGG + chr2_2:6275927-6275946 None:intergenic 35.0%
!! TGGTCTTAGCTTTAGTTTCT+CGG + chr2_2:6275957-6275976 None:intergenic 35.0%
! TTGTCGTTTGTTGAATGATG+TGG - chr2_2:6276009-6276028 Msa0233860:CDS 35.0%
ATCTCATGAACGAGTGAAAA+TGG + chr2_2:6276110-6276129 None:intergenic 35.0%
!! TTTTCATGTGGTTCTACAGA+AGG - chr2_2:6276437-6276456 Msa0233860:intron 35.0%
TACAGAAGGAAAAGGAAGAA+GGG - chr2_2:6276451-6276470 Msa0233860:CDS 35.0%
! CTTGAACTTGTTCTAACTGA+TGG - chr2_2:6276579-6276598 Msa0233860:CDS 35.0%
TGACTCTAATACAGAATTGG+TGG - chr2_2:6276689-6276708 Msa0233860:intron 35.0%
GCTACAGTATGTTTCTTCTT+TGG + chr2_2:6276783-6276802 None:intergenic 35.0%
CATGCTGTATCGTAAGTAGA+AGG + chr2_2:6269888-6269907 None:intergenic 40.0%
CTTCTACTTACGATACAGCA+TGG - chr2_2:6269886-6269905 Msa0233860:three_prime_UTR 40.0%
CTCAACAATCAGAAACCTCA+AGG - chr2_2:6269975-6269994 Msa0233860:three_prime_UTR 40.0%
! ATCAGAAACCTCAAGGGTAT+TGG - chr2_2:6269982-6270001 Msa0233860:three_prime_UTR 40.0%
!! TCAGAAACCTCAAGGGTATT+GGG - chr2_2:6269983-6270002 Msa0233860:three_prime_UTR 40.0%
CAATGGTTGCACTCATTAAG+TGG - chr2_2:6270048-6270067 Msa0233860:CDS 40.0%
GGCAAGTCAATGGTAGATAA+AGG - chr2_2:6270077-6270096 Msa0233860:CDS 40.0%
TGAAAGATGATTGCCCTCTT+TGG - chr2_2:6270348-6270367 Msa0233860:CDS 40.0%
GAACAATAGCTAGCCAAAGA+GGG + chr2_2:6270364-6270383 None:intergenic 40.0%
AGAACAATAGCTAGCCAAAG+AGG + chr2_2:6270365-6270384 None:intergenic 40.0%
TCAGCAAGTTCAATCATAGC+AGG + chr2_2:6270389-6270408 None:intergenic 40.0%
!! TGAACTTGCTGATGATACCA+TGG - chr2_2:6270397-6270416 Msa0233860:CDS 40.0%
!! GAACTTGCTGATGATACCAT+GGG - chr2_2:6270398-6270417 Msa0233860:CDS 40.0%
TGCTCTTCACAAAGTCATCA+AGG - chr2_2:6270429-6270448 Msa0233860:CDS 40.0%
GCTCTTCACAAAGTCATCAA+GGG - chr2_2:6270430-6270449 Msa0233860:CDS 40.0%
!! GCAAAAGCATTCATGGCTTA+TGG - chr2_2:6270946-6270965 Msa0233860:CDS 40.0%
! GTAAATAGGCAAGGCATTCT+TGG + chr2_2:6270975-6270994 None:intergenic 40.0%
TTGTGCCAAGGACTGTAAAT+AGG + chr2_2:6270989-6271008 None:intergenic 40.0%
AGTTCCACAAGCATATCCAA+TGG - chr2_2:6271131-6271150 Msa0233860:intron 40.0%
TCATCCATTGGATATGCTTG+TGG + chr2_2:6271138-6271157 None:intergenic 40.0%
ACAAGCATATCCAATGGATG+AGG - chr2_2:6271137-6271156 Msa0233860:intron 40.0%
GCTAACCAACTACAGAAGTT+CGG - chr2_2:6271180-6271199 Msa0233860:intron 40.0%
CAACTACAGAAGTTCGGATT+GGG - chr2_2:6271186-6271205 Msa0233860:intron 40.0%
! ATACCTTTTGCACGATGTTG+TGG - chr2_2:6271524-6271543 Msa0233860:intron 40.0%
AATCCACAACATCGTGCAAA+AGG + chr2_2:6271530-6271549 None:intergenic 40.0%
ATGCACATCTACTTGAAGCT+AGG + chr2_2:6271693-6271712 None:intergenic 40.0%
!! CACACATTTGTTTCTACGGT+AGG + chr2_2:6271727-6271746 None:intergenic 40.0%
!!! TCCACTTTGGATCCCTTTTT+TGG - chr2_2:6271884-6271903 Msa0233860:CDS 40.0%
!!! CCACTTTGGATCCCTTTTTT+GGG - chr2_2:6271885-6271904 Msa0233860:CDS 40.0%
TGGATGGATGTCCCAAAAAA+GGG + chr2_2:6271899-6271918 None:intergenic 40.0%
TTGGATGGATGTCCCAAAAA+AGG + chr2_2:6271900-6271919 None:intergenic 40.0%
TTACACCATGTGTGTCATGT+CGG + chr2_2:6271939-6271958 None:intergenic 40.0%
CTTTAAATCCATGTGTCCTC+AGG + chr2_2:6272872-6272891 None:intergenic 40.0%
!! TACATGCAGTACGGTTTTGT+TGG - chr2_2:6272982-6273001 Msa0233860:intron 40.0%
TCCACTGAACATTAGGTTTG+AGG + chr2_2:6273090-6273109 None:intergenic 40.0%
CTTGAGAAGATCGTTTCAAC+AGG - chr2_2:6273152-6273171 Msa0233860:intron 40.0%
!! TTGGGTCAACATTGATTCGT+TGG + chr2_2:6273441-6273460 None:intergenic 40.0%
ATAGAGAGCCGATCTAATGT+TGG + chr2_2:6273864-6273883 None:intergenic 40.0%
! TTTTGGATTAACCAACGGCT+TGG - chr2_2:6273900-6273919 Msa0233860:CDS 40.0%
!! AGCATGAGTTGAGTTTTCCA+TGG - chr2_2:6274218-6274237 Msa0233860:intron 40.0%
TCACATATCCAACACATCGA+TGG - chr2_2:6274389-6274408 Msa0233860:intron 40.0%
ATCGCATGCATTCATGCAAT+TGG + chr2_2:6274550-6274569 None:intergenic 40.0%
GGAACTTTGAGTACTATGCA+CGG + chr2_2:6274595-6274614 None:intergenic 40.0%
!! TGACTCTTGGTGGATTATGT+AGG - chr2_2:6274856-6274875 Msa0233860:intron 40.0%
!! TCTTGGTGGATTATGTAGGT+GGG - chr2_2:6274860-6274879 Msa0233860:intron 40.0%
GGCATTAGTAATATGGGGTT+TGG - chr2_2:6274894-6274913 Msa0233860:intron 40.0%
GTATGTAAGAGTCATGAGGT+AGG + chr2_2:6274968-6274987 None:intergenic 40.0%
ATCCGTATGTAAGAGTCATG+AGG + chr2_2:6274972-6274991 None:intergenic 40.0%
CATTGACACATGTCGGATAT+CGG - chr2_2:6275143-6275162 Msa0233860:intron 40.0%
TTTCCTTTCATGGCTCATAG+AGG - chr2_2:6275808-6275827 Msa0233860:intron 40.0%
TTCAGGTAAGCATCAATGGA+TGG + chr2_2:6275860-6275879 None:intergenic 40.0%
! TTGAAGTCATGCCTGTTTTC+AGG + chr2_2:6275877-6275896 None:intergenic 40.0%
! TTCAATTGGCTCACATGTCT+TGG - chr2_2:6275892-6275911 Msa0233860:intron 40.0%
!! CTTAGCTTTAGTTTCTCGGT+TGG + chr2_2:6275953-6275972 None:intergenic 40.0%
GAATGATGTGGAGAGTTATC+AGG - chr2_2:6276021-6276040 Msa0233860:CDS 40.0%
!!! CTAGTTTTTTATCCCTCGCT+CGG - chr2_2:6276149-6276168 Msa0233860:intron 40.0%
!!! TAGTTTTTTATCCCTCGCTC+GGG - chr2_2:6276150-6276169 Msa0233860:intron 40.0%
! TGTGGTTCTACAGAAGGAAA+AGG - chr2_2:6276443-6276462 Msa0233860:CDS 40.0%
CTACAGAAGGAAAAGGAAGA+AGG - chr2_2:6276450-6276469 Msa0233860:CDS 40.0%
! TGAAGTTGTTTGCTAGGCTT+AGG + chr2_2:6276618-6276637 None:intergenic 40.0%
GACAGATGAAGTTGTTTGCT+AGG + chr2_2:6276624-6276643 None:intergenic 40.0%
CTCTAATACAGAATTGGTGG+AGG - chr2_2:6276692-6276711 Msa0233860:intron 40.0%
AGGTTCATGACACCTAAAGT+CGG - chr2_2:6276861-6276880 Msa0233860:CDS 40.0%
ATGAATCCAAACCCGACTTT+AGG + chr2_2:6276876-6276895 None:intergenic 40.0%
CAATCCAAATATGGTAGCTC+CGG + chr2_2:6277072-6277091 None:intergenic 40.0%
CAAGATAAGGGAAGCTCCAT+TGG + chr2_2:6269792-6269811 None:intergenic 45.0%
CTACGCTCGATGCAAGATAA+GGG + chr2_2:6269804-6269823 None:intergenic 45.0%
CTTATCTTGCATCGAGCGTA+GGG - chr2_2:6269803-6269822 Msa0233860:three_prime_UTR 45.0%
!! CAGAAACCTCAAGGGTATTG+GGG - chr2_2:6269984-6270003 Msa0233860:three_prime_UTR 45.0%
GCACTCATTAAGTGGAACAC+TGG - chr2_2:6270056-6270075 Msa0233860:CDS 45.0%
! GAAGAGCACATCTAAACCCA+TGG + chr2_2:6270417-6270436 None:intergenic 45.0%
TGTCCTACATTGCTAACCGT+CGG - chr2_2:6270459-6270478 Msa0233860:CDS 45.0%
TTTCCGACGGTTAGCAATGT+AGG + chr2_2:6270465-6270484 None:intergenic 45.0%
ATTGCATTGCATGTGTAGGG+AGG - chr2_2:6270786-6270805 Msa0233860:intron 45.0%
ATGTGTAGGGAGGAAGTTGT+GGG - chr2_2:6270796-6270815 Msa0233860:intron 45.0%
! ATGATGGAGGCAAAGCTTCA+AGG + chr2_2:6270855-6270874 None:intergenic 45.0%
! AATGCTTTTGCAGTGGCAGA+GGG + chr2_2:6270937-6270956 None:intergenic 45.0%
!! TGCCACTGCAAAAGCATTCA+TGG - chr2_2:6270939-6270958 Msa0233860:CDS 45.0%
! AGCCATGAATGCTTTTGCAG+TGG + chr2_2:6270944-6270963 None:intergenic 45.0%
CCAAGGACTGTAAATAGGCA+AGG + chr2_2:6270984-6271003 None:intergenic 45.0%
CCTTGCCTATTTACAGTCCT+TGG - chr2_2:6270981-6271000 Msa0233860:CDS 45.0%
! TTTTGGGCATCTTTGTGCCA+AGG + chr2_2:6271001-6271020 None:intergenic 45.0%
GGATATGCTTGTGGAACTTC+AGG + chr2_2:6271129-6271148 None:intergenic 45.0%
CCAATCCGAACTTCTGTAGT+TGG + chr2_2:6271188-6271207 None:intergenic 45.0%
CCAACTACAGAAGTTCGGAT+TGG - chr2_2:6271185-6271204 Msa0233860:intron 45.0%
GGCCAAATGGCAAATGCAAT+TGG - chr2_2:6271310-6271329 Msa0233860:CDS 45.0%
ACCATTAGACAGTTGCACCA+AGG - chr2_2:6271443-6271462 Msa0233860:intron 45.0%
! ACCTTGGTGCAACTGTCTAA+TGG + chr2_2:6271447-6271466 None:intergenic 45.0%
CCCAAAAAAGGGATCCAAAG+TGG + chr2_2:6271888-6271907 None:intergenic 45.0%
TGTGTCATGTCGGGTTATGT+GGG + chr2_2:6271929-6271948 None:intergenic 45.0%
ATAACCCGACATGACACACA+TGG - chr2_2:6271931-6271950 Msa0233860:CDS 45.0%
TACACCATGTGTGTCATGTC+GGG + chr2_2:6271938-6271957 None:intergenic 45.0%
GCAGCTTCAGAAAGATAGTC+TGG - chr2_2:6272836-6272855 Msa0233860:intron 45.0%
GCCTCAAACCTAATGTTCAG+TGG - chr2_2:6273086-6273105 Msa0233860:intron 45.0%
CAGTGGAGAATATGAACTCG+AGG - chr2_2:6273103-6273122 Msa0233860:intron 45.0%
AGGATGCTTAGAACTACGAC+AGG - chr2_2:6273178-6273197 Msa0233860:intron 45.0%
! TTTGGTAGCCATCGATGTGT+TGG + chr2_2:6274400-6274419 None:intergenic 45.0%
!! CTCTTGGTGGATTATGTAGG+TGG - chr2_2:6274859-6274878 Msa0233860:intron 45.0%
!! TGTAGGTGGGCTGAAAAATG+CGG - chr2_2:6274873-6274892 Msa0233860:intron 45.0%
! TAACTTTGCTGTGGCTGCTT+AGG + chr2_2:6275573-6275592 None:intergenic 45.0%
TTGCCTCTATGAGCCATGAA+AGG + chr2_2:6275814-6275833 None:intergenic 45.0%
CATGGCTCATAGAGGCAAAA+TGG - chr2_2:6275816-6275835 Msa0233860:intron 45.0%
GAGGCAAAATGGAGCAGAAA+TGG - chr2_2:6275827-6275846 Msa0233860:intron 45.0%
CTTGTTACGTCACCACATCT+AGG + chr2_2:6276184-6276203 None:intergenic 45.0%
! GATTTGGAATCGTCCAGTCT+TGG - chr2_2:6276233-6276252 Msa0233860:intron 45.0%
AGAGAGACCAACTCTATGAG+CGG - chr2_2:6276358-6276377 Msa0233860:intron 45.0%
ATTTCACCCGCTCATAGAGT+TGG + chr2_2:6276368-6276387 None:intergenic 45.0%
GGATAAATCTCACCGGAATG+AGG - chr2_2:6276841-6276860 Msa0233860:CDS 45.0%
! AGGTGTCATGAACCTCATTC+CGG + chr2_2:6276856-6276875 None:intergenic 45.0%
GGTTCATGACACCTAAAGTC+GGG - chr2_2:6276862-6276881 Msa0233860:CDS 45.0%
ATGACACCTAAAGTCGGGTT+TGG - chr2_2:6276867-6276886 Msa0233860:CDS 45.0%
CAAACCGGAGCTACCATATT+TGG - chr2_2:6277065-6277084 Msa0233860:CDS 45.0%
CGGAGCTACCATATTTGGAT+TGG - chr2_2:6277070-6277089 Msa0233860:CDS 45.0%
!!! AAATTTTTTTATTTTGTTTT+TGG + chr2_2:6272406-6272425 None:intergenic 5.0%
!! TAATTTAAAAGTTTATAAAA+AGG + chr2_2:6273286-6273305 None:intergenic 5.0%
!! TATAATATAAAAAATAATTG+TGG - chr2_2:6273556-6273575 Msa0233860:intron 5.0%
CCTACGCTCGATGCAAGATA+AGG + chr2_2:6269805-6269824 None:intergenic 50.0%
CCTTATCTTGCATCGAGCGT+AGG - chr2_2:6269802-6269821 Msa0233860:three_prime_UTR 50.0%
GTGGAACACTGGCAAGTCAA+TGG - chr2_2:6270067-6270086 Msa0233860:CDS 50.0%
CATGTGTAGGGAGGAAGTTG+TGG - chr2_2:6270795-6270814 Msa0233860:intron 50.0%
TGTGTAGGGAGGAAGTTGTG+GGG - chr2_2:6270797-6270816 Msa0233860:intron 50.0%
! GAATGCTTTTGCAGTGGCAG+AGG + chr2_2:6270938-6270957 None:intergenic 50.0%
GCACAAAGATGCCCAAAAGC+AGG - chr2_2:6271003-6271022 Msa0233860:CDS 50.0%
GGATTGGGCGAGTACTTTGT+GGG - chr2_2:6271201-6271220 Msa0233860:intron 50.0%
!! TTATGTGGGGTTGGGTTGGA+TGG + chr2_2:6271915-6271934 None:intergenic 50.0%
ATGTCGGGTTATGTGGGGTT+GGG + chr2_2:6271923-6271942 None:intergenic 50.0%
GTGTCATGTCGGGTTATGTG+GGG + chr2_2:6271928-6271947 None:intergenic 50.0%
GTGTGTCATGTCGGGTTATG+TGG + chr2_2:6271930-6271949 None:intergenic 50.0%
TTTGAGCTCCTGAGGACACA+TGG - chr2_2:6272861-6272880 Msa0233860:intron 50.0%
!!! TTTTCCATGGTTTGCTCGCC+TGG - chr2_2:6274231-6274250 Msa0233860:intron 50.0%
ACATGTCGGATATCGGCACA+TGG - chr2_2:6275150-6275169 Msa0233860:intron 50.0%
CGGGTTTCTGAACCTAGATG+TGG - chr2_2:6276169-6276188 Msa0233860:intron 50.0%
CTGGACGATTCCAAATCAGC+AGG + chr2_2:6276230-6276249 None:intergenic 50.0%
TTGGAATCGTCCAGTCTTGG+TGG - chr2_2:6276236-6276255 Msa0233860:intron 50.0%
GAGAGACCAACTCTATGAGC+GGG - chr2_2:6276359-6276378 Msa0233860:intron 50.0%
CTCTCTCCCCAATACCCTTG+AGG + chr2_2:6269993-6270012 None:intergenic 55.0%
!! CAAGGGTATTGGGGAGAGAG+TGG - chr2_2:6269993-6270012 Msa0233860:three_prime_UTR 55.0%
GTGTAGGGAGGAAGTTGTGG+GGG - chr2_2:6270798-6270817 Msa0233860:intron 55.0%
TTGCAGTGGCAGAGGGAGAT+TGG + chr2_2:6270930-6270949 None:intergenic 55.0%
! CGGATTGGGCGAGTACTTTG+TGG - chr2_2:6271200-6271219 Msa0233860:intron 55.0%
CATGTCGGGTTATGTGGGGT+TGG + chr2_2:6271924-6271943 None:intergenic 55.0%
GTCTGGCATTTGAGCTCCTG+AGG - chr2_2:6272853-6272872 Msa0233860:intron 55.0%
TGATCCAGGCGAGCAAACCA+TGG + chr2_2:6274238-6274257 None:intergenic 55.0%
AGGTTCAGAAACCCGAGCGA+GGG + chr2_2:6276164-6276183 None:intergenic 55.0%
TAGGTTCAGAAACCCGAGCG+AGG + chr2_2:6276165-6276184 None:intergenic 55.0%
CGGGTTATGTGGGGTTGGGT+TGG + chr2_2:6271919-6271938 None:intergenic 60.0%
GCTGTGGCTGCTTAGGCCTA+TGG + chr2_2:6275566-6275585 None:intergenic 60.0%
AGGGGACTGGGCCAAGCCGT+TGG + chr2_2:6273914-6273933 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 6269739 6277198 6269739 ID=Msa0233860;Name=Msa0233860
chr2_2 mRNA 6269739 6277198 6269739 ID=Msa0233860-mRNA-1;Parent=Msa0233860;Name=Msa0233860-mRNA-1;_AED=0.06;_eAED=0.06;_QI=53|1|1|1|1|1|12|299|810
chr2_2 exon 6269739 6270481 6269739 ID=Msa0233860-mRNA-1:exon:2785;Parent=Msa0233860-mRNA-1
chr2_2 exon 6270895 6271140 6270895 ID=Msa0233860-mRNA-1:exon:2784;Parent=Msa0233860-mRNA-1
chr2_2 exon 6271247 6271382 6271247 ID=Msa0233860-mRNA-1:exon:2783;Parent=Msa0233860-mRNA-1
chr2_2 exon 6271844 6272059 6271844 ID=Msa0233860-mRNA-1:exon:2782;Parent=Msa0233860-mRNA-1
chr2_2 exon 6272164 6272262 6272164 ID=Msa0233860-mRNA-1:exon:2781;Parent=Msa0233860-mRNA-1
chr2_2 exon 6272608 6272723 6272608 ID=Msa0233860-mRNA-1:exon:2780;Parent=Msa0233860-mRNA-1
chr2_2 exon 6273738 6273946 6273738 ID=Msa0233860-mRNA-1:exon:2779;Parent=Msa0233860-mRNA-1
chr2_2 exon 6274037 6274155 6274037 ID=Msa0233860-mRNA-1:exon:2778;Parent=Msa0233860-mRNA-1
chr2_2 exon 6275681 6275804 6275681 ID=Msa0233860-mRNA-1:exon:2777;Parent=Msa0233860-mRNA-1
chr2_2 exon 6275913 6276133 6275913 ID=Msa0233860-mRNA-1:exon:2776;Parent=Msa0233860-mRNA-1
chr2_2 exon 6276439 6276634 6276439 ID=Msa0233860-mRNA-1:exon:2775;Parent=Msa0233860-mRNA-1
chr2_2 exon 6276839 6277198 6276839 ID=Msa0233860-mRNA-1:exon:2774;Parent=Msa0233860-mRNA-1
chr2_2 five_prime_UTR 6277146 6277198 6277146 ID=Msa0233860-mRNA-1:five_prime_utr;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6276839 6277145 6276839 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6276439 6276634 6276439 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6275913 6276133 6275913 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6275681 6275804 6275681 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6274037 6274155 6274037 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6273738 6273946 6273738 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6272608 6272723 6272608 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6272164 6272262 6272164 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6271844 6272059 6271844 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6271247 6271382 6271247 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6270895 6271140 6270895 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 CDS 6270038 6270481 6270038 ID=Msa0233860-mRNA-1:cds;Parent=Msa0233860-mRNA-1
chr2_2 three_prime_UTR 6269739 6270037 6269739 ID=Msa0233860-mRNA-1:three_prime_utr;Parent=Msa0233860-mRNA-1
Gene Sequence

>Msa0233860

ATGGAGCTTCCCTTATCTTGCATCGAGCGTAGGGTTCAAAAGATAAAGAAAAATATATTCTCATCGAATTTTGATCTTTATACTTTTGTATGCCCTTCTACTTACGATACAGCATGGTTAGCAATGATACCTCATTCCAAATATCCTTCACAACCTATGTTCAACAATTATTTAGATTGGTTGCTCAACAATCAGAAACCTCAAGGGTATTGGGGAGAGAGTGGCACAATTGAATGCCTTCCAGCAACAATTGTTTCAATGGTTGCACTCATTAAGTGGAACACTGGCAAGTCAATGGTAGATAAAGGACGGTCATTTATTCATGCATATGCTGATAAACTGCTGAATGAAGTGAAAGATGATTGCCCTCTTTGGCTAGCTATTGTTCTGCCTGCTATGATTGAACTTGCTGATGATACCATGGGTTTAGATGTGCTCTTCACAAAGTCATCAAGGGACACTATGTCCTACATTGCTAACCGTCGGAAAAGTTTTCTTAACAAGGAGGAAGTTGTGGGGGATTTTCATTACTACCCTCCATTAATGTCATACCTTGAAGCTTTGCCTCCATCATATGTAAATGAAAAAGATATATGTAAGAATTTGAGTGCAGATGGTTCATTGTTCCAATCTCCCTCTGCCACTGCAAAAGCATTCATGGCTTATGGAAACCAAGAATGCCTTGCCTATTTACAGTCCTTGGCACAAAGATGCCCAAAAGCAGTTCCACAAGCATATCCAATGGATGAGGATCATATTAAACTTTGCATTGCTAACCAACTACAGAAGTTCGGATTGGGCGAGTACTTTGTGGGAGAGATTGAAGTATTTTTGGCACAAGTTTATAGGAAATATAATAAGGAGCAAAATTCGCGGGTAAAAGTATCAAATATAAATGCTTTGCAGCTTCAGAAAGATAGTCTGGCATTTGAGCTCCTGAGGACACATGGATTTAAAGTATCACCATTACGGTTTTGTTGGTTTCTAAATCATGATGAAATTCGAGCTGAAATTGAGAAAGATTATGAGCAATTCACAAGTGCAATGCTTCACGTGTTTAGAGCCTCAAACCTAATGTTCAGTGGAGAATATGAACTCGAGGAAGCTAGAACTTTTTCTAGGAAACTACTTGAGAAGATCGTTTCAACAGGAAAAGGATGCTTAGAACTACGACAGATAGAGCATGAGTTGAGTTTTCCATGGTTTGCTCGCCTGGATCATTTAGAACACAGAATGTGGATTGAAGAAAGAGAAGTTAATGCTCTATGGAAAGGAAAGATGTCATATAATAGGGTATCATATCTTTATAAGGATGAGTTGCTACAACTTGCAACCCTAAACTTTGAGTTAAAGCAATTGATGTACAAAAATGAGCTGAAGGAACTAAATAGGTGGGCTGAAAAATGCGGCATTAGTAATATGGGGTTTGGAAGAGAAAAAACCACTTATTGTTACTTTGCTGTTGCTGCTGTCACAACCCTACCTCATGACTCTTACATACGGATGCTTGTAGCTAAAAGTGCAATTATAATCACAGTTGCAGATGATTTCTTTGACGAGATCGGGTCTCTCAATGAACTAGAAATTCTTACAGATGCTGTTCAAAGATGGGATGCCATAGGCCTAAGCAGCCACAGCAAAGTTATATTTGATGCACTTGATAATCTTGTGAGTGAAGCTACTACAAAATATCTCCAACAAGAAGGAACATATGATGATATCTCTGGAAGCTTAAAAGATCTATGGTATGAAGTTTTCCTTTCATGGCTCATAGAGGCAAAATGGAGCAGAAATGGACATAAACCATCCATTGATGCTTACCTGAAAACAGGCATGACTTCAATTGGCTCACATGTCTTGGTGCTTCCATCCTCATGTTTTCTGAAATCAAGCTTACCAACCGAGAAACTAAAGCTAAGACCATATGAACACATAACAAAACTACTAATGGTCATTTGTCGTTTGTTGAATGATGTGGAGAGTTATCAGAAGGAAAAGGAAGAAGGGAAATTGAATTCTGTTTTGGTCAACTTGATAGACAACCCTGAATTTGATATTGAAGATTCAATTGCTTTTGTGAGAAAAATAGTTGAGAAAAAGAAGAAAGAGTTTCTTGAACTTGTTCTAACTGATGGATTATGTGATTTGCCTAAGCCTAGCAAACAACTTCATCTGTCATGCTTGAAAGTTTTTCAGATGTTTTTCTACTCCAAAAATAGATTTGACTCTAATACAGAATTGGTGGAGGATATAAACAAAGCAATATATCTTCCTTTGAATAGAACTACAAAGTGTCTTTCATCTCAAGCATTCCCAAAGAAGAAACATACTGTAGCAAATCTTCATGTAAATTTCCCATTCAAACATAATAGTAGGATAAATCTCACCGGAATGAGGTTCATGACACCTAAAGTCGGGTTTGGATTCATTTAA
Protein sequence

>Msa0233860

MELPLSCIERRVQKIKKNIFSSNFDLYTFVCPSTYDTAWLAMIPHSKYPSQPMFNNYLDWLLNNQKPQGYWGESGTIECLPATIVSMVALIKWNTGKSMVDKGRSFIHAYADKLLNEVKDDCPLWLAIVLPAMIELADDTMGLDVLFTKSSRDTMSYIANRRKSFLNKEEVVGDFHYYPPLMSYLEALPPSYVNEKDICKNLSADGSLFQSPSATAKAFMAYGNQECLAYLQSLAQRCPKAVPQAYPMDEDHIKLCIANQLQKFGLGEYFVGEIEVFLAQVYRKYNKEQNSRVKVSNINALQLQKDSLAFELLRTHGFKVSPLRFCWFLNHDEIRAEIEKDYEQFTSAMLHVFRASNLMFSGEYELEEARTFSRKLLEKIVSTGKGCLELRQIEHELSFPWFARLDHLEHRMWIEEREVNALWKGKMSYNRVSYLYKDELLQLATLNFELKQLMYKNELKELNRWAEKCGISNMGFGREKTTYCYFAVAAVTTLPHDSYIRMLVAKSAIIITVADDFFDEIGSLNELEILTDAVQRWDAIGLSSHSKVIFDALDNLVSEATTKYLQQEGTYDDISGSLKDLWYEVFLSWLIEAKWSRNGHKPSIDAYLKTGMTSIGSHVLVLPSSCFLKSSLPTEKLKLRPYEHITKLLMVICRLLNDVESYQKEKEEGKLNSVLVNLIDNPEFDIEDSIAFVRKIVEKKKKEFLELVLTDGLCDLPKPSKQLHLSCLKVFQMFFYSKNRFDSNTELVEDINKAIYLPLNRTTKCLSSQAFPKKKHTVANLHVNFPFKHNSRINLTGMRFMTPKVGFGFI*