AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236360 MtrunA17_Chr2g0294301 94.837 368 19 0 1 368 1 368 0.0 722
Msa0236360 MtrunA17_Chr2g0294311 62.881 361 122 2 18 368 15 373 1.32e-165 467
Msa0236360 MtrunA17_Chr4g0068441 61.518 369 140 2 1 368 1 368 3.17e-165 466
Msa0236360 MtrunA17_Chr8g0374101 47.253 364 180 4 14 365 10 373 1.09e-114 338
Msa0236360 MtrunA17_Chr3g0077571 41.598 363 203 6 6 367 2 356 4.68e-90 275
Msa0236360 MtrunA17_Chr2g0285061 40.678 354 202 7 18 367 15 364 1.48e-86 266
Msa0236360 MtrunA17_Chr8g0380041 39.833 359 207 7 14 367 8 362 5.56e-85 262
Msa0236360 MtrunA17_Chr5g0434621 42.320 319 175 5 36 351 26 338 3.42e-83 257
Msa0236360 MtrunA17_Chr3g0086641 38.936 357 209 7 15 367 18 369 3.85e-82 254
Msa0236360 MtrunA17_Chr3g0092131 44.340 318 168 7 37 350 25 337 8.98e-82 253
Msa0236360 MtrunA17_Chr3g0131321 39.883 341 193 4 34 367 33 368 4.95e-81 252
Msa0236360 MtrunA17_Chr4g0060811 43.396 318 171 7 37 350 29 341 1.47e-80 251
Msa0236360 MtrunA17_Chr4g0017431 36.538 364 225 4 8 367 1 362 9.14e-80 248
Msa0236360 MtrunA17_Chr1g0182811 35.967 367 230 4 3 366 1 365 1.98e-77 243
Msa0236360 MtrunA17_Chr1g0189931 36.464 362 225 4 7 366 4 362 4.73e-77 241
Msa0236360 MtrunA17_Chr7g0275021 38.462 338 203 4 31 366 30 364 6.78e-77 241
Msa0236360 MtrunA17_Chr5g0444401 36.158 354 209 6 24 368 17 362 6.13e-76 238
Msa0236360 MtrunA17_Chr7g0274991 35.795 352 220 5 18 366 15 363 3.78e-74 234
Msa0236360 MtrunA17_Chr1g0189901 36.182 351 219 4 18 366 14 361 1.17e-73 233
Msa0236360 MtrunA17_Chr7g0275001 36.782 348 216 3 21 366 11 356 2.41e-73 232
Msa0236360 MtrunA17_Chr7g0275011 36.338 355 221 4 14 366 13 364 6.27e-72 228
Msa0236360 MtrunA17_Chr3g0077581 40.597 335 188 10 37 365 38 367 2.38e-70 224
Msa0236360 MtrunA17_Chr4g0008851 35.693 339 211 5 32 366 29 364 1.96e-68 219
Msa0236360 MtrunA17_Chr3g0099161 36.338 355 209 6 21 366 78 424 1.42e-67 219
Msa0236360 MtrunA17_Chr3g0099231 34.746 354 215 6 21 366 14 359 2.67e-67 217
Msa0236360 MtrunA17_Chr3g0099151 35.829 374 219 9 5 366 56 420 1.06e-66 216
Msa0236360 MtrunA17_Chr7g0215961 35.015 337 201 5 32 366 30 350 2.86e-66 213
Msa0236360 MtrunA17_Chr1g0189891 35.000 360 216 7 16 366 4 354 5.18e-66 213
Msa0236360 MtrunA17_Chr6g0457921 35.435 333 209 4 37 366 31 360 2.16e-64 209
Msa0236360 MtrunA17_Chr5g0396511 35.737 319 200 3 37 353 48 363 2.50e-63 206
Msa0236360 MtrunA17_Chr2g0301641 33.918 342 207 9 35 366 43 375 2.22e-61 202
Msa0236360 MtrunA17_Chr3g0085881 39.823 339 177 9 37 368 35 353 4.77e-61 200
Msa0236360 MtrunA17_Chr3g0120861 34.969 326 201 7 30 350 33 352 8.06e-61 199
Msa0236360 MtrunA17_Chr3g0105401 34.615 338 211 7 19 351 12 344 1.48e-60 198
Msa0236360 MtrunA17_Chr1g0156921 34.188 351 215 8 1 340 1 346 1.66e-60 199
Msa0236360 MtrunA17_Chr5g0438621 34.320 338 211 7 18 350 13 344 3.73e-60 197
Msa0236360 MtrunA17_Chr2g0330781 34.783 322 202 6 33 350 29 346 4.38e-60 197
Msa0236360 MtrunA17_Chr5g0438641 35.447 347 213 7 9 350 6 346 5.75e-60 197
Msa0236360 MtrunA17_Chr5g0432101 34.870 347 213 8 10 349 8 348 3.77e-59 195
Msa0236360 MtrunA17_Chr1g0156931 34.783 322 201 6 33 351 39 354 7.36e-59 194
Msa0236360 MtrunA17_Chr8g0341001 34.146 328 208 6 27 350 24 347 1.86e-58 193
Msa0236360 MtrunA17_Chr8g0371481 33.538 325 200 10 35 351 41 357 8.03e-58 192
Msa0236360 MtrunA17_Chr8g0371471 32.110 327 211 7 35 356 41 361 3.65e-56 187
Msa0236360 MtrunA17_Chr2g0320671 32.609 322 208 7 33 350 28 344 1.85e-55 185
Msa0236360 MtrunA17_Chr1g0156911 33.429 347 215 6 11 346 5 346 4.25e-55 184
Msa0236360 MtrunA17_Chr3g0142921 35.202 321 195 8 35 351 36 347 1.07e-54 183
Msa0236360 MtrunA17_Chr2g0284991 36.223 323 190 10 31 349 29 339 1.69e-54 184
Msa0236360 MtrunA17_Chr8g0380031 34.218 339 206 9 32 367 81 405 6.96e-54 182
Msa0236360 MtrunA17_Chr2g0284921 38.730 315 175 10 37 346 36 337 8.98e-54 181
Msa0236360 MtrunA17_Chr3g0085231 33.154 371 213 12 3 368 10 350 1.14e-53 181
Msa0236360 MtrunA17_Chr2g0284951 37.846 325 182 11 31 351 29 337 2.96e-53 180
Msa0236360 MtrunA17_Chr4g0027521 34.756 328 196 9 33 350 25 344 3.91e-53 179
Msa0236360 MtrunA17_Chr8g0370951 31.768 362 233 8 15 367 11 367 8.75e-53 179
Msa0236360 MtrunA17_Chr5g0438631 31.361 338 222 7 18 350 11 343 1.06e-52 178
Msa0236360 MtrunA17_Chr1g0156901 33.229 319 205 5 26 341 41 354 3.96e-52 177
Msa0236360 MtrunA17_Chr5g0420811 34.706 340 196 10 18 348 12 334 2.27e-51 174
Msa0236360 MtrunA17_Chr8g0371491 33.043 345 220 7 18 356 17 356 2.29e-51 175
Msa0236360 MtrunA17_Chr3g0142941 34.615 312 194 6 33 340 45 350 3.99e-51 174
Msa0236360 MtrunA17_Chr2g0283191 33.237 346 210 9 12 341 12 352 1.77e-50 173
Msa0236360 MtrunA17_Chr2g0285001 34.604 341 201 13 15 346 10 337 2.58e-49 170
Msa0236360 MtrunA17_Chr5g0405831 30.028 363 238 8 5 356 7 364 3.00e-49 169
Msa0236360 MtrunA17_Chr2g0284941 34.637 358 190 13 8 355 1 324 1.59e-48 167
Msa0236360 MtrunA17_Chr8g0344941 31.319 364 226 10 5 355 9 361 3.00e-48 167
Msa0236360 MtrunA17_Chr8g0370981 28.916 415 229 10 10 366 11 417 3.04e-48 168
Msa0236360 MtrunA17_Chr8g0349341 30.409 342 215 8 35 367 37 364 7.08e-48 166
Msa0236360 MtrunA17_Chr1g0156891 32.907 313 201 7 33 341 41 348 2.25e-47 164
Msa0236360 MtrunA17_Chr4g0046151 31.198 359 217 11 15 352 17 366 4.97e-47 164
Msa0236360 MtrunA17_Chr5g0405821 29.730 370 234 10 8 356 1 365 6.35e-47 163
Msa0236360 MtrunA17_Chr8g0349321 31.977 344 207 11 35 367 37 364 2.08e-44 157
Msa0236360 MtrunA17_Chr8g0344931 31.884 345 214 9 29 367 31 360 4.63e-43 153
Msa0236360 MtrunA17_Chr5g0437421 30.938 320 201 10 31 338 28 339 1.65e-40 146
Msa0236360 MtrunA17_Chr8g0349331 30.286 350 187 10 29 367 29 332 2.46e-40 145
Msa0236360 MtrunA17_Chr1g0157001 29.167 336 217 7 40 366 41 364 1.79e-39 144
Msa0236360 MtrunA17_Chr6g0459921 33.197 244 155 7 127 367 122 360 1.09e-36 136
Msa0236360 MtrunA17_Chr8g0352901 31.624 351 196 11 35 356 28 363 1.20e-36 136
Msa0236360 MtrunA17_Chr6g0455661 32.636 239 154 6 131 367 238 471 1.08e-35 135
Msa0236360 MtrunA17_Chr6g0455661 53.333 120 51 4 9 126 5 121 4.21e-27 111
Msa0236360 MtrunA17_Chr8g0370961 29.839 248 161 6 122 365 4 242 1.18e-34 127
Msa0236360 MtrunA17_Chr7g0226931 27.569 399 218 11 15 358 9 391 1.88e-34 131
Msa0236360 MtrunA17_Chr8g0349301 31.186 295 184 8 26 316 28 307 2.99e-34 129
Msa0236360 MtrunA17_Chr7g0271551 30.973 339 198 13 30 351 31 350 4.06e-34 129
Msa0236360 MtrunA17_Chr6g0450731 29.674 337 205 11 35 356 33 352 1.92e-33 127
Msa0236360 MtrunA17_Chr7g0254461 28.205 351 212 10 35 356 43 382 2.16e-33 128
Msa0236360 MtrunA17_Chr7g0275291 26.857 350 214 9 34 356 32 366 2.66e-32 124
Msa0236360 MtrunA17_Chr6g0450721 29.700 367 208 13 14 352 2 346 2.74e-32 124
Msa0236360 MtrunA17_Chr7g0226911 27.320 388 228 11 10 356 1 375 2.06e-31 122
Msa0236360 MtrunA17_Chr8g0381581 28.696 345 217 10 35 356 40 378 1.29e-30 120
Msa0236360 MtrunA17_Chr6g0450701 30.446 381 220 13 7 356 3 369 2.64e-30 119
Msa0236360 MtrunA17_Chr8g0347751 27.907 387 226 15 7 356 3 373 2.81e-30 119
Msa0236360 MtrunA17_Chr1g0160101 28.000 350 211 12 35 356 42 378 6.67e-30 118
Msa0236360 MtrunA17_Chr4g0027571 31.336 217 142 4 136 350 3 214 8.58e-30 114
Msa0236360 MtrunA17_Chr2g0283531 29.867 375 207 14 16 352 3 359 1.41e-29 117
Msa0236360 MtrunA17_Chr1g0160011 28.613 346 211 11 35 356 40 373 1.84e-29 117
Msa0236360 MtrunA17_Chr1g0159971 28.421 380 226 12 13 356 13 382 3.12e-29 116
Msa0236360 MtrunA17_Chr1g0159981 29.428 367 219 12 18 356 27 381 2.01e-28 114
Msa0236360 MtrunA17_Chr1g0159991 29.971 347 207 12 35 356 36 371 3.32e-28 113
Msa0236360 MtrunA17_Chr1g0160031 28.116 345 214 10 35 356 39 372 6.77e-28 112
Msa0236360 MtrunA17_Chr1g0189921 47.541 122 56 2 18 137 14 129 4.11e-27 105
Msa0236360 MtrunA17_Chr7g0273101 28.117 377 204 15 21 356 15 365 5.14e-27 110
Msa0236360 MtrunA17_Chr3g0104821 27.859 341 214 9 34 352 43 373 1.67e-26 108
Msa0236360 MtrunA17_Chr2g0301581 29.692 357 203 14 19 352 15 346 4.84e-26 107
Msa0236360 MtrunA17_Chr6g0450711 29.345 351 199 13 35 356 122 452 1.38e-25 107
Msa0236360 MtrunA17_Chr7g0226941 28.490 351 222 10 28 356 26 369 1.50e-25 106
Msa0236360 MtrunA17_Chr2g0283481 27.003 337 215 13 37 352 49 375 1.51e-25 106
Msa0236360 MtrunA17_Chr0c01g0489581 30.178 338 195 13 34 352 29 344 2.07e-25 105
Msa0236360 MtrunA17_Chr1g0198351 28.391 317 185 14 37 339 45 333 2.89e-25 105
Msa0236360 MtrunA17_Chr0c01g0489571 30.178 338 195 13 34 352 29 344 3.94e-25 104
Msa0236360 MtrunA17_Chr5g0440501 29.018 224 146 5 132 347 10 228 4.75e-25 102
Msa0236360 MtrunA17_Chr2g0317271 30.178 338 195 14 34 352 29 344 5.46e-25 104
Msa0236360 MtrunA17_Chr1g0198381 27.385 325 199 13 37 349 4 303 5.83e-25 103
Msa0236360 MtrunA17_Chr4g0057991 26.431 367 226 12 12 353 16 363 9.52e-25 103
Msa0236360 MtrunA17_Chr2g0301541 29.132 357 205 14 19 352 15 346 2.47e-24 102
Msa0236360 MtrunA17_Chr8g0339251 30.189 318 178 10 35 330 28 323 2.53e-24 102
Msa0236360 MtrunA17_Chr1g0178931 28.435 313 195 12 37 341 39 330 4.06e-24 101
Msa0236360 MtrunA17_Chr2g0317261 29.882 338 196 14 34 352 29 344 5.04e-24 101
Msa0236360 MtrunA17_Chr1g0191461 27.666 347 203 13 35 350 31 360 1.23e-23 100
Msa0236360 MtrunA17_Chr7g0266061 28.438 320 195 11 33 341 40 336 3.13e-23 99.4
Msa0236360 MtrunA17_Chr2g0283501 26.374 364 232 12 13 352 9 360 6.17e-23 98.6
Msa0236360 MtrunA17_Chr2g0283511 26.744 344 203 13 40 352 36 361 1.60e-22 97.8
Msa0236360 MtrunA17_Chr7g0229591 36.000 150 92 3 33 179 28 176 2.15e-22 94.0
Msa0236360 MtrunA17_Chr7g0229581 36.170 141 88 2 211 350 8 147 2.71e-22 92.4
Msa0236360 MtrunA17_Chr3g0093031 27.246 345 208 11 34 352 29 356 8.40e-22 95.5
Msa0236360 MtrunA17_Chr3g0112821 27.859 341 206 12 34 352 29 351 1.38e-21 94.7
Msa0236360 MtrunA17_Chr2g0321991 46.364 110 52 3 16 118 10 119 5.73e-20 84.7
Msa0236360 MtrunA17_Chr8g0370971 42.975 121 59 4 15 125 15 135 9.79e-20 85.5
Msa0236360 MtrunA17_Chr1g0189911 30.822 146 98 3 222 366 1 144 2.18e-18 81.3
Msa0236360 MtrunA17_Chr6g0469511 47.191 89 44 2 33 118 28 116 6.64e-18 79.7
Msa0236360 MtrunA17_Chr4g0027561 42.574 101 55 2 33 130 28 128 3.53e-17 77.8
Msa0236360 MtrunA17_Chr2g0301571 28.472 288 164 11 84 352 38 302 9.51e-16 77.4
Msa0236360 MtrunA17_Chr1g0198391 24.706 340 188 14 37 339 35 343 1.33e-15 77.4
Msa0236360 MtrunA17_Chr2g0301551 28.472 288 164 11 84 352 38 302 1.34e-15 76.6
Msa0236360 MtrunA17_Chr6g0469521 33.088 136 81 2 201 331 22 152 3.90e-15 72.0
Msa0236360 MtrunA17_Chr3g0096551 25.138 362 206 13 34 352 28 367 1.31e-14 74.3
Msa0236360 MtrunA17_Chr4g0018571 35.484 155 88 4 201 350 23 170 1.40e-14 71.2
Msa0236360 MtrunA17_Chr7g0228261 37.037 81 50 1 286 366 11 90 1.50e-12 63.2
Msa0236360 MtrunA17_Chr3g0104831 26.471 272 157 9 108 352 37 292 6.70e-12 65.9
Msa0236360 MtrunA17_Chr2g0308201 44.928 69 37 1 19 86 19 87 1.49e-11 60.5
Msa0236360 MtrunA17_Chr4g0018561 55.769 52 21 1 33 82 28 79 2.73e-11 59.7
Msa0236360 MtrunA17_Chr5g0432081 41.935 62 35 1 288 349 3 63 3.14e-11 58.9
Msa0236360 MtrunA17_Chr2g0284931 24.681 235 146 8 136 367 13 219 3.49e-11 62.4
Msa0236360 MtrunA17_Chr2g0283541 28.922 204 127 7 160 352 89 285 3.68e-11 63.5
Msa0236360 MtrunA17_Chr3g0104801 36.364 88 55 1 34 120 43 130 4.65e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236360 AT2G23540.1 47.198 339 173 3 33 365 46 384 9.22e-114 337
Msa0236360 AT3G50400.1 47.353 340 172 4 33 365 32 371 1.61e-110 328
Msa0236360 AT5G15720.1 45.858 338 174 5 35 367 30 363 8.25e-95 287
Msa0236360 AT4G16230.1 55.102 245 108 2 10 252 4 248 1.78e-90 272
Msa0236360 AT1G29660.1 41.926 353 198 6 18 367 15 363 1.93e-88 271
Msa0236360 AT5G41890.1 41.261 349 180 7 35 365 31 372 2.02e-88 271
Msa0236360 AT1G71691.2 44.478 335 177 6 33 365 53 380 3.36e-88 271
Msa0236360 AT1G29670.1 41.667 360 193 10 18 367 10 362 1.94e-86 266
Msa0236360 AT1G29670.2 41.667 360 193 10 18 367 78 430 2.76e-85 265
Msa0236360 AT1G71250.1 38.806 335 202 3 32 365 38 370 1.85e-82 256
Msa0236360 AT5G45670.1 42.342 333 184 7 37 365 31 359 4.82e-82 254
Msa0236360 AT4G18970.1 41.493 335 188 7 37 367 30 360 1.48e-80 251
Msa0236360 AT5G08460.1 40.533 338 194 4 35 367 49 384 9.41e-80 249
Msa0236360 AT5G37690.1 41.195 318 178 5 36 350 28 339 1.70e-79 248
Msa0236360 AT4G18970.2 41.493 335 188 7 37 367 30 360 1.91e-79 249
Msa0236360 AT1G74460.1 42.320 319 175 8 36 350 24 337 9.18e-77 241
Msa0236360 AT5G37690.2 39.623 318 175 6 36 350 28 331 2.76e-72 229
Msa0236360 AT5G15720.2 47.368 266 132 4 35 295 30 292 2.97e-72 228
Msa0236360 AT4G10950.2 35.693 339 212 4 33 368 69 404 1.67e-71 229
Msa0236360 AT4G28780.1 33.803 355 226 4 18 366 10 361 6.00e-70 224
Msa0236360 AT1G33811.1 38.123 341 192 10 21 347 15 350 2.75e-69 222
Msa0236360 AT4G10950.1 35.693 339 208 5 33 368 69 400 3.59e-69 223
Msa0236360 AT5G18430.1 34.066 364 231 6 6 366 3 360 5.65e-69 221
Msa0236360 AT3G04290.1 36.336 333 207 4 32 362 26 355 6.89e-69 221
Msa0236360 AT1G71691.3 47.547 265 131 5 33 295 53 311 2.40e-68 218
Msa0236360 AT5G33370.1 34.627 335 214 4 34 366 29 360 4.06e-67 216
Msa0236360 AT5G15720.3 40.484 289 163 5 84 367 48 332 1.10e-65 211
Msa0236360 AT1G71691.1 39.437 284 164 5 83 365 3 279 1.58e-63 204
Msa0236360 AT2G04570.1 36.232 345 208 9 13 351 5 343 7.40e-63 205
Msa0236360 AT5G55050.1 35.484 341 202 9 37 366 41 374 1.65e-60 199
Msa0236360 AT2G42990.1 35.777 341 203 9 18 350 10 342 9.70e-59 194
Msa0236360 AT1G75880.1 34.341 364 214 8 4 351 14 368 3.85e-58 193
Msa0236360 AT4G26790.1 33.436 326 208 6 32 353 26 346 5.67e-58 192
Msa0236360 AT4G26790.2 33.436 326 208 6 32 353 26 346 5.67e-58 192
Msa0236360 AT3G16370.1 33.636 330 211 6 25 350 20 345 4.38e-57 190
Msa0236360 AT1G58430.1 33.903 351 201 11 9 341 5 342 1.18e-56 189
Msa0236360 AT5G22810.1 35.393 356 204 12 11 350 6 351 2.16e-56 188
Msa0236360 AT1G75880.2 34.066 364 214 9 4 351 14 367 4.69e-56 188
Msa0236360 AT3G53100.1 35.965 342 205 9 16 350 9 343 8.52e-55 184
Msa0236360 AT2G31540.1 33.131 329 193 10 35 349 35 350 3.01e-54 182
Msa0236360 AT1G75890.2 35.110 319 197 8 35 348 47 360 3.81e-54 182
Msa0236360 AT1G06990.1 32.919 322 204 7 35 350 37 352 4.05e-54 182
Msa0236360 AT1G75890.3 35.110 319 197 8 35 348 76 389 6.13e-54 183
Msa0236360 AT2G19060.1 33.238 349 209 11 13 352 3 336 9.53e-54 181
Msa0236360 AT2G24560.1 34.385 317 189 9 35 341 34 341 2.08e-53 181
Msa0236360 AT1G20120.1 33.939 330 204 9 35 359 78 398 1.60e-52 179
Msa0236360 AT1G75890.1 34.139 331 197 9 35 348 47 373 2.12e-52 178
Msa0236360 AT5G03820.1 34.056 323 204 6 33 350 31 349 2.21e-52 177
Msa0236360 AT4G30140.1 34.234 333 196 11 37 366 35 347 2.22e-52 177
Msa0236360 AT5G03820.2 34.568 324 201 8 33 350 59 377 6.67e-52 177
Msa0236360 AT1G53920.1 33.714 350 209 10 31 367 44 383 1.23e-51 176
Msa0236360 AT1G71120.1 31.884 345 211 9 30 365 26 355 1.26e-51 176
Msa0236360 AT1G75900.1 31.889 323 210 7 33 351 41 357 9.40e-51 174
Msa0236360 AT2G30310.1 32.456 342 200 11 18 341 13 341 1.22e-50 173
Msa0236360 AT2G19050.1 32.578 353 205 11 13 352 3 335 1.23e-50 173
Msa0236360 AT5G42170.1 34.472 322 199 9 33 350 48 361 6.52e-50 172
Msa0236360 AT5G03810.1 33.538 325 202 9 33 350 28 345 1.40e-49 170
Msa0236360 AT2G30220.1 34.277 318 188 10 35 341 33 340 2.29e-49 170
Msa0236360 AT5G45960.1 33.750 320 193 9 31 339 43 354 3.98e-49 170
Msa0236360 AT1G20132.1 33.333 324 201 8 35 351 61 376 2.32e-48 168
Msa0236360 AT2G40250.1 31.532 333 205 7 28 347 29 351 2.43e-48 167
Msa0236360 AT4G16233.1 55.906 127 56 0 239 365 1 127 4.22e-48 159
Msa0236360 AT5G33370.2 34.091 264 170 3 34 295 29 290 1.30e-47 164
Msa0236360 AT2G19010.2 30.623 369 232 11 6 367 26 377 2.35e-46 162
Msa0236360 AT3G14820.1 32.822 326 206 8 29 350 26 342 2.58e-46 162
Msa0236360 AT5G45950.1 30.368 326 214 8 26 348 31 346 2.59e-46 162
Msa0236360 AT2G19010.1 32.132 333 207 10 37 367 32 347 2.93e-46 161
Msa0236360 AT5G40990.1 31.085 341 222 5 35 367 37 372 1.06e-45 160
Msa0236360 AT1G73610.1 31.692 325 200 8 30 350 30 336 1.68e-45 159
Msa0236360 AT1G75920.2 29.972 357 213 12 11 351 1 336 3.89e-45 158
Msa0236360 AT3G14225.1 28.933 356 238 6 23 367 25 376 4.41e-45 159
Msa0236360 AT3G14225.2 29.096 354 236 6 23 367 25 372 5.14e-45 159
Msa0236360 AT1G59406.1 33.333 324 202 8 33 351 28 342 7.43e-45 158
Msa0236360 AT1G59030.1 33.333 324 202 8 33 351 28 342 7.43e-45 158
Msa0236360 AT1G58725.1 33.333 324 202 8 33 351 28 342 7.43e-45 158
Msa0236360 AT5G63170.1 31.231 333 198 9 18 341 11 321 2.69e-44 156
Msa0236360 AT1G20135.1 31.045 335 202 11 17 341 7 322 6.01e-44 155
Msa0236360 AT2G03980.2 33.645 321 192 7 35 346 43 351 3.97e-43 154
Msa0236360 AT2G03980.3 33.645 321 192 7 35 346 43 351 3.97e-43 154
Msa0236360 AT2G03980.1 33.645 321 192 7 35 346 43 351 3.97e-43 154
Msa0236360 AT2G03980.4 33.645 321 192 7 35 346 43 351 3.97e-43 154
Msa0236360 AT1G75910.1 29.143 350 225 9 18 358 8 343 6.16e-42 150
Msa0236360 AT2G24560.2 34.657 277 163 8 35 301 34 302 1.84e-41 148
Msa0236360 AT1G20130.2 30.564 337 204 8 33 351 182 506 4.01e-41 151
Msa0236360 AT1G75920.1 29.132 357 205 12 22 351 11 346 5.54e-41 147
Msa0236360 AT1G20130.1 30.564 337 204 8 33 351 202 526 6.36e-41 151
Msa0236360 AT1G53940.2 29.738 343 224 7 35 367 39 374 1.56e-40 147
Msa0236360 AT2G19050.2 34.902 255 154 7 29 281 25 269 7.18e-40 143
Msa0236360 AT1G23500.1 31.343 335 201 9 26 352 26 339 8.81e-40 144
Msa0236360 AT1G58520.3 31.751 337 201 11 24 351 19 335 5.97e-39 142
Msa0236360 AT1G58525.1 31.751 337 201 11 24 351 19 335 5.97e-39 142
Msa0236360 AT1G53990.1 29.360 344 217 9 35 367 35 363 1.18e-38 142
Msa0236360 AT1G54790.3 29.592 392 206 14 5 356 7 368 7.91e-38 140
Msa0236360 AT1G75920.3 27.557 352 197 11 11 351 1 305 3.36e-36 134
Msa0236360 AT3G43570.1 30.226 354 198 12 6 351 1 313 5.99e-36 133
Msa0236360 AT1G75920.4 29.167 312 188 11 52 351 18 308 3.20e-35 131
Msa0236360 AT1G75930.1 30.061 326 201 12 34 350 28 335 3.79e-35 132
Msa0236360 AT3G05180.1 28.962 366 219 12 23 360 24 376 5.99e-35 132
Msa0236360 AT1G54030.1 27.083 336 217 11 34 366 51 361 1.34e-33 129
Msa0236360 AT1G54790.1 28.278 389 212 14 8 356 6 367 2.37e-33 128
Msa0236360 AT1G67830.1 29.971 347 202 12 35 352 30 364 3.13e-33 127
Msa0236360 AT4G16220.1 55.752 113 46 2 17 125 9 121 1.03e-32 123
Msa0236360 AT4G01130.1 27.151 372 225 12 12 352 11 367 1.48e-32 125
Msa0236360 AT3G43550.1 31.293 294 190 6 6 295 1 286 3.64e-32 122
Msa0236360 AT1G54020.2 27.545 334 217 11 37 366 35 347 9.57e-32 123
Msa0236360 AT3G27950.1 28.261 368 219 13 18 356 10 361 1.15e-31 123
Msa0236360 AT1G56670.1 29.305 331 203 11 37 351 42 357 2.69e-31 122
Msa0236360 AT2G04020.2 30.721 319 162 9 35 346 43 309 1.51e-30 119
Msa0236360 AT1G09390.1 30.211 331 200 11 37 351 39 354 3.45e-30 119
Msa0236360 AT2G31550.1 31.100 209 122 6 151 349 13 209 3.93e-30 115
Msa0236360 AT1G28650.1 27.614 373 232 15 20 368 22 380 4.06e-29 116
Msa0236360 AT5G14450.1 29.024 379 228 13 9 356 9 377 4.61e-29 116
Msa0236360 AT2G04020.1 36.453 203 113 5 35 231 43 235 7.14e-29 113
Msa0236360 AT3G62280.1 29.738 343 196 13 30 350 31 350 1.80e-28 114
Msa0236360 AT1G54790.2 26.506 415 212 15 8 356 6 393 6.52e-28 113
Msa0236360 AT1G54000.1 26.667 345 217 11 33 365 34 354 7.25e-28 113
Msa0236360 AT3G26430.1 27.762 353 224 9 28 356 24 369 8.32e-28 112
Msa0236360 AT1G28660.1 27.179 390 237 17 7 366 4 376 1.95e-27 112
Msa0236360 AT1G28570.1 27.859 341 204 13 39 352 38 363 2.38e-27 111
Msa0236360 AT1G28670.1 26.289 388 244 16 7 366 4 377 2.38e-27 111
Msa0236360 AT3G14210.1 28.571 343 213 13 35 366 36 357 2.93e-27 111
Msa0236360 AT1G53940.1 30.224 268 175 6 35 297 39 299 3.22e-27 109
Msa0236360 AT3G14220.1 25.915 355 231 13 22 366 19 351 7.60e-27 109
Msa0236360 AT1G28640.1 26.415 371 229 15 20 363 20 373 9.27e-27 110
Msa0236360 AT1G54010.1 26.023 342 217 11 37 366 38 355 1.08e-26 109
Msa0236360 AT2G27360.1 28.863 343 199 16 39 352 37 363 1.11e-26 110
Msa0236360 AT1G28580.1 27.988 343 201 14 39 352 41 366 1.41e-26 109
Msa0236360 AT1G31550.2 28.779 344 196 15 39 352 40 364 4.62e-26 108
Msa0236360 AT1G28660.2 27.179 390 236 18 7 366 4 375 4.94e-26 107
Msa0236360 AT3G48460.1 26.744 344 213 14 31 352 37 363 1.42e-25 106
Msa0236360 AT5G03610.1 27.673 318 191 12 37 339 45 338 4.55e-25 104
Msa0236360 AT3G09930.2 29.206 315 191 11 37 339 41 335 4.56e-24 102
Msa0236360 AT3G09930.1 29.206 315 191 11 37 339 41 335 4.56e-24 102
Msa0236360 AT1G28610.2 27.635 351 203 15 33 352 29 359 6.61e-24 102
Msa0236360 AT1G54030.2 26.792 265 169 8 34 295 51 293 1.84e-23 99.8
Msa0236360 AT1G28600.1 28.902 346 193 15 39 352 35 359 1.14e-22 98.6
Msa0236360 AT5G45910.1 28.763 372 232 15 6 352 1 364 2.84e-22 97.1
Msa0236360 AT4G01130.3 26.460 291 172 10 95 353 2 282 3.61e-22 95.5
Msa0236360 AT4G01130.2 26.403 303 189 10 12 295 11 298 4.71e-22 95.9
Msa0236360 AT5G03600.1 27.476 313 198 10 32 338 11 300 5.40e-22 95.5
Msa0236360 AT5G03600.2 27.215 316 201 10 32 341 46 338 6.34e-22 95.9
Msa0236360 AT1G31550.1 27.114 343 200 15 39 352 40 361 1.10e-21 95.9
Msa0236360 AT1G28590.1 25.740 338 215 12 39 352 40 365 3.67e-21 94.4
Msa0236360 AT1G54020.1 25.818 275 181 9 94 366 8 261 2.81e-20 90.1
Msa0236360 AT1G54020.5 25.818 275 181 9 94 366 8 261 2.81e-20 90.1
Msa0236360 AT1G54020.3 25.818 275 181 9 94 366 8 261 2.81e-20 90.1
Msa0236360 AT3G62280.2 29.225 284 160 11 30 295 31 291 4.38e-19 87.0
Msa0236360 AT1G56670.2 27.675 271 169 9 37 295 42 297 4.56e-19 87.0
Msa0236360 AT1G54020.4 26.794 209 145 5 160 366 10 212 8.09e-19 85.1
Msa0236360 AT3G14210.2 29.439 214 138 8 160 366 22 229 4.40e-17 80.9
Msa0236360 AT1G28570.2 26.891 238 148 9 129 352 66 291 5.76e-14 72.4

Find 68 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACACTTGTCTCCAGAAAA+TGG 0.189223 2_2:-9327516 None:intergenic
ATTGCAGAACGTTTATTAAA+TGG 0.212718 2_2:+9328123 Msa0236360:CDS
ATCGATCCAAGTATATTTAT+TGG 0.215394 2_2:+9328064 Msa0236360:CDS
GAAGATATCATTAGCAAAAT+TGG 0.215499 2_2:+9327115 Msa0236360:CDS
TACTTGTCTCCTAATGCTTA+TGG 0.219625 2_2:+9326028 Msa0236360:CDS
AATAATTGAGCTAGGTGATT+AGG 0.265635 2_2:-9327546 None:intergenic
CCTCAACAAGGTTCTTCAAT+TGG 0.274013 2_2:-9327575 None:intergenic
AAAGCAAATCATCACCCTTT+TGG 0.277294 2_2:+9325613 Msa0236360:CDS
TGGAGATGCTTACCACATTA+TGG 0.282345 2_2:+9327635 Msa0236360:CDS
GTGGTAAATGTTGGTCCTAT+TGG 0.311602 2_2:+9327465 Msa0236360:CDS
AGAACCGTTGTTGATGTTAT+AGG 0.319449 2_2:+9325676 Msa0236360:CDS
ATAATTGAGCTAGGTGATTA+GGG 0.322500 2_2:-9327545 None:intergenic
TGGTAAATGTTGGTCCTATT+GGG 0.322655 2_2:+9327466 Msa0236360:CDS
AAGAGTTGCCAAACATTTGT+AGG 0.332790 2_2:-9328165 None:intergenic
GAGCTAGGTGATTAGGGAAT+TGG 0.335306 2_2:-9327539 None:intergenic
ATGATGAATTACAGTAAATA+TGG 0.342390 2_2:+9327666 Msa0236360:CDS
AAGGGTTCATTATTTGTTCA+TGG 0.353774 2_2:+9327615 Msa0236360:CDS
TCGATCCAAGTATATTTATT+GGG 0.354002 2_2:+9328065 Msa0236360:CDS
CTCAACAAGGTTCTTCAATT+GGG 0.373272 2_2:-9327574 None:intergenic
TCTCTCTTCACAGTAGCATT+TGG 0.375070 2_2:+9327169 Msa0236360:CDS
TGTCACCTAGTTGGTCGATT+TGG 0.384428 2_2:+9328000 Msa0236360:CDS
ATGTTTCACCTACAAATGTT+TGG 0.416903 2_2:+9328157 Msa0236360:CDS
ATGATGGTCACAAATGATTC+TGG 0.426170 2_2:-9327259 None:intergenic
CACCTAGTTGGTCGATTTGG+AGG 0.427520 2_2:+9328003 Msa0236360:CDS
AAAAGGGTGATGATTTGCTT+TGG 0.428586 2_2:-9325611 None:intergenic
TGAACTATAAGAGCAACAAC+TGG 0.432737 2_2:+9325985 Msa0236360:intron
CACACTTGTCTCCAGAAAAT+GGG 0.435694 2_2:-9327515 None:intergenic
CTTGATAACTATTTGGCACC+TGG 0.437197 2_2:+9327205 Msa0236360:CDS
GCATAAAATTTCCTCTCCAA+TGG 0.437807 2_2:+9325426 Msa0236360:exon
TTTCCAAAATCAATTCCAAA+AGG 0.441043 2_2:-9325628 None:intergenic
AGAACCTTGTTGAGGAATTG+AGG 0.451494 2_2:+9327583 Msa0236360:CDS
AATTATGCTTCTGCTGCAGC+TGG 0.452909 2_2:+9326073 Msa0236360:CDS
GGAATTGAGGACAAATTTGA+AGG 0.455369 2_2:+9327596 Msa0236360:CDS
CATAAAATTTCCTCTCCAAT+GGG 0.469528 2_2:+9325427 Msa0236360:exon
ATCACCGATCCATAAGCATT+AGG 0.473986 2_2:-9326037 None:intergenic
ATACATGGTATACACCCAAT+AGG 0.480201 2_2:-9327480 None:intergenic
TAATTGCCACTCTGGAATTG+AGG 0.482479 2_2:-9327230 None:intergenic
AATTGCCACTCTGGAATTGA+GGG 0.484983 2_2:-9327229 None:intergenic
TTCCAAAATCAATTCCAAAA+GGG 0.494496 2_2:-9325627 None:intergenic
TCTGCATGTTGTCACCTAGT+TGG 0.496655 2_2:+9327991 Msa0236360:CDS
AGTATCCCAATAAATATACT+TGG 0.499989 2_2:-9328070 None:intergenic
GGGTGTTAAATAATTGAGCT+AGG 0.500038 2_2:-9327554 None:intergenic
TATGGATCGGTGATTCTAAA+GGG 0.500527 2_2:+9326046 Msa0236360:CDS
GGTGATTCTTTGCTCGATGT+AGG 0.509930 2_2:+9325562 Msa0236360:CDS
TTATGGATCGGTGATTCTAA+AGG 0.511913 2_2:+9326045 Msa0236360:CDS
GAGAAACCAAACAAAACAAG+AGG 0.517413 2_2:+9325389 None:intergenic
CTCAAATTATAAAGACCCAT+TGG 0.521109 2_2:-9325442 None:intergenic
CACTCTGGAATTGAGGGACC+AGG 0.530750 2_2:-9327223 None:intergenic
TTGCAGCGGTTATTCACTCT+AGG 0.535321 2_2:+9327426 Msa0236360:intron
GGAGACAATAATTGCCACTC+TGG 0.560416 2_2:-9327238 None:intergenic
ATAACATTGGCAGCATCACT+AGG 0.560734 2_2:-9328099 None:intergenic
AAAATTGTTGTGGTAAATGT+TGG 0.566046 2_2:+9327456 Msa0236360:CDS
GTCTCCTAATGCTTATGGAT+CGG 0.570322 2_2:+9326033 Msa0236360:CDS
GGGTTTAAATCTCTCATACA+TGG 0.580780 2_2:-9327495 None:intergenic
TAAGCATTAGGAGACAAGTA+AGG 0.583422 2_2:-9326025 None:intergenic
TCATGATATCTTCCATAATG+TGG 0.590694 2_2:-9327647 None:intergenic
GAATTGAGGACAAATTTGAA+GGG 0.595549 2_2:+9327597 Msa0236360:CDS
TTGTCCTCAATTCCTCAACA+AGG 0.598318 2_2:-9327587 None:intergenic
AGCCTCCAAATCGACCAACT+AGG 0.621062 2_2:-9328005 None:intergenic
TCTGAATGTTGATATCATGA+TGG 0.622808 2_2:-9327275 None:intergenic
CCAATTGAAGAACCTTGTTG+AGG 0.628282 2_2:+9327575 Msa0236360:CDS
GCTGGAATTCTCAATTACAC+TGG 0.641243 2_2:+9326091 Msa0236360:CDS
GCATTAGGAGACAAGTAAGG+AGG 0.648380 2_2:-9326022 None:intergenic
GAACTATAAGAGCAACAACT+GGG 0.648398 2_2:+9325986 Msa0236360:intron
ATTATAAAGACCCATTGGAG+AGG 0.658225 2_2:-9325437 None:intergenic
ACGTTCTGCAATGATAACAT+TGG 0.669402 2_2:-9328112 None:intergenic
CTTACCTATAACATCAACAA+CGG 0.672230 2_2:-9325680 None:intergenic
CTGGTCCCTCAATTCCAGAG+TGG 0.723486 2_2:+9327224 Msa0236360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAATTACTTTTTTTGT+TGG - chr2_2:9326408-9326427 None:intergenic 10.0%
!!! TAATTATTTTAATGTGTAAT+AGG + chr2_2:9327952-9327971 Msa0236360:intron 10.0%
!!! AAATTTTATGCCAAAAAAAT+AGG - chr2_2:9325417-9325436 None:intergenic 15.0%
!! ATAAGATAAGATAATGAAAA+TGG - chr2_2:9325720-9325739 None:intergenic 15.0%
!!! CTTATCTTATGTTTATTTTT+AGG + chr2_2:9325735-9325754 Msa0236360:intron 15.0%
!!! TTCATAGTTTTTACTTTTTA+GGG + chr2_2:9325926-9325945 Msa0236360:intron 15.0%
!! TTACAATAATGATAAAAAAG+AGG + chr2_2:9326216-9326235 Msa0236360:intron 15.0%
!! TATAATGCTTAAATTGAAAA+AGG - chr2_2:9326287-9326306 None:intergenic 15.0%
!!! ATTGATTTAACAATTTTTTG+AGG - chr2_2:9326326-9326345 None:intergenic 15.0%
!!! AAGGAAAATATTTAACTTAT+TGG - chr2_2:9326923-9326942 None:intergenic 15.0%
!! AAAAAAAAATTATTCTACCA+GGG - chr2_2:9327765-9327784 None:intergenic 15.0%
!! AAAAAAAAAATTATTCTACC+AGG - chr2_2:9327766-9327785 None:intergenic 15.0%
!!! TCATTTTTGAGAATATGTTT+AGG + chr2_2:9325473-9325492 Msa0236360:CDS 20.0%
!!! CTTCATAGTTTTTACTTTTT+AGG + chr2_2:9325925-9325944 Msa0236360:intron 20.0%
!! AAGAATGCAAAATTATAAGT+AGG - chr2_2:9326349-9326368 None:intergenic 20.0%
!! ATGATGAATTACAGTAAATA+TGG + chr2_2:9327666-9327685 Msa0236360:CDS 20.0%
! TTCCAAAATCAATTCCAAAA+GGG - chr2_2:9325630-9325649 None:intergenic 25.0%
! TTTCCAAAATCAATTCCAAA+AGG - chr2_2:9325631-9325650 None:intergenic 25.0%
! AAAGTAAAAACTATGAAGCA+CGG - chr2_2:9325923-9325942 None:intergenic 25.0%
! AACTAGACAACAAAAAAACA+AGG - chr2_2:9326144-9326163 None:intergenic 25.0%
! TAGTTCCAAGTTCAATTATT+AGG + chr2_2:9326159-9326178 Msa0236360:intron 25.0%
! AGTTCCAAGTTCAATTATTA+GGG + chr2_2:9326160-9326179 Msa0236360:intron 25.0%
! CTCACATTTACATATACATA+TGG + chr2_2:9326250-9326269 Msa0236360:intron 25.0%
! TGTACAATATCTTCAAAATG+TGG + chr2_2:9326447-9326466 Msa0236360:intron 25.0%
!! AAATGTGGATTAATTTCTTG+AGG + chr2_2:9326462-9326481 Msa0236360:intron 25.0%
! TAATTGTCATTCAATGAGTT+TGG + chr2_2:9326669-9326688 Msa0236360:intron 25.0%
! AATTGTCATTCAATGAGTTT+GGG + chr2_2:9326670-9326689 Msa0236360:intron 25.0%
! GTATATAAGTTTCACACTAA+GGG + chr2_2:9326740-9326759 Msa0236360:intron 25.0%
! TTAACTTATTGGTGAAAATG+TGG - chr2_2:9326912-9326931 None:intergenic 25.0%
! AAGAGAAAATTAGTTGTAGA+AGG - chr2_2:9326942-9326961 None:intergenic 25.0%
! ATTCAAATCCTCTAAATACA+TGG + chr2_2:9327011-9327030 Msa0236360:intron 25.0%
! TGAATCTTCATGTGATTAAT+AGG + chr2_2:9327042-9327061 Msa0236360:intron 25.0%
! GAAGATATCATTAGCAAAAT+TGG + chr2_2:9327115-9327134 Msa0236360:CDS 25.0%
!!! CGATTTTCTTGATAACTATT+TGG + chr2_2:9327198-9327217 Msa0236360:CDS 25.0%
!!! CTAGGTTTTTAGCAAAATTA+CGG - chr2_2:9327311-9327330 None:intergenic 25.0%
!!! TTCATGTATTCAAGTTTTCT+AGG - chr2_2:9327329-9327348 None:intergenic 25.0%
! ATTATTACAACTATTTGCAG+CGG + chr2_2:9327412-9327431 Msa0236360:intron 25.0%
!! ATTTACCACAACAATTTTTC+TGG - chr2_2:9327454-9327473 None:intergenic 25.0%
! AAAATTGTTGTGGTAAATGT+TGG + chr2_2:9327456-9327475 Msa0236360:CDS 25.0%
! TGAATTACAGTAAATATGGT+AGG + chr2_2:9327670-9327689 Msa0236360:intron 25.0%
! GAATTACAGTAAATATGGTA+GGG + chr2_2:9327671-9327690 Msa0236360:intron 25.0%
! AATCTACATAGACAAAAGAA+AGG - chr2_2:9327717-9327736 None:intergenic 25.0%
! ATCGATCCAAGTATATTTAT+TGG + chr2_2:9328064-9328083 Msa0236360:CDS 25.0%
! TCGATCCAAGTATATTTATT+GGG + chr2_2:9328065-9328084 Msa0236360:CDS 25.0%
! AGTATCCCAATAAATATACT+TGG - chr2_2:9328073-9328092 None:intergenic 25.0%
! ATTGCAGAACGTTTATTAAA+TGG + chr2_2:9328123-9328142 Msa0236360:CDS 25.0%
!!! ACAAGAGGAACCTATTTTTT+TGG + chr2_2:9325404-9325423 Msa0236360:five_prime_UTR 30.0%
CATAAAATTTCCTCTCCAAT+GGG + chr2_2:9325427-9325446 Msa0236360:exon 30.0%
CTCAAATTATAAAGACCCAT+TGG - chr2_2:9325445-9325464 None:intergenic 30.0%
!! ATCCAAGCTTCATTTGTTTT+TGG + chr2_2:9325541-9325560 Msa0236360:CDS 30.0%
CTTACCTATAACATCAACAA+CGG - chr2_2:9325683-9325702 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG + chr2_2:9325834-9325853 Msa0236360:intron 30.0%
ACAACAAAAAAACAAGGTGT+AGG - chr2_2:9326138-9326157 None:intergenic 30.0%
AGGATTGTTTAACAATGATG+TGG + chr2_2:9326482-9326501 Msa0236360:intron 30.0%
ATTTGTCTAAGAGATGAGAA+TGG + chr2_2:9326572-9326591 Msa0236360:intron 30.0%
GGTATATAAGTTTCACACTA+AGG + chr2_2:9326739-9326758 Msa0236360:intron 30.0%
TTGATATACTTCGATAGACT+TGG - chr2_2:9326796-9326815 None:intergenic 30.0%
TACTATGAGACAAGAAAATG+AGG + chr2_2:9326850-9326869 Msa0236360:intron 30.0%
TCATGTTACCATGTATTTAG+AGG - chr2_2:9327022-9327041 None:intergenic 30.0%
TCTTCATGTGATTAATAGGT+TGG + chr2_2:9327046-9327065 Msa0236360:intron 30.0%
TCTGAATGTTGATATCATGA+TGG - chr2_2:9327278-9327297 None:intergenic 30.0%
! AGAGATTTAAACCCATTTTC+TGG + chr2_2:9327504-9327523 Msa0236360:CDS 30.0%
ATAATTGAGCTAGGTGATTA+GGG - chr2_2:9327548-9327567 None:intergenic 30.0%
AATAATTGAGCTAGGTGATT+AGG - chr2_2:9327549-9327568 None:intergenic 30.0%
GAATTGAGGACAAATTTGAA+GGG + chr2_2:9327597-9327616 Msa0236360:CDS 30.0%
AAGGGTTCATTATTTGTTCA+TGG + chr2_2:9327615-9327634 Msa0236360:CDS 30.0%
TCATGATATCTTCCATAATG+TGG - chr2_2:9327650-9327669 None:intergenic 30.0%
! ACTTTTGAATAACGATCACA+TGG - chr2_2:9328036-9328055 None:intergenic 30.0%
ATGTTTCACCTACAAATGTT+TGG + chr2_2:9328157-9328176 Msa0236360:CDS 30.0%
GCATAAAATTTCCTCTCCAA+TGG + chr2_2:9325426-9325445 Msa0236360:exon 35.0%
ATTATAAAGACCCATTGGAG+AGG - chr2_2:9325440-9325459 None:intergenic 35.0%
CACCAAAAACAAATGAAGCT+TGG - chr2_2:9325546-9325565 None:intergenic 35.0%
!! AAAAGGGTGATGATTTGCTT+TGG - chr2_2:9325614-9325633 None:intergenic 35.0%
! AAAGCAAATCATCACCCTTT+TGG + chr2_2:9325613-9325632 Msa0236360:CDS 35.0%
!!! CACCCTTTTGGAATTGATTT+TGG + chr2_2:9325625-9325644 Msa0236360:CDS 35.0%
!! ATTGATTTTGGAAAACCCAC+AGG + chr2_2:9325637-9325656 Msa0236360:CDS 35.0%
AGAACCGTTGTTGATGTTAT+AGG + chr2_2:9325676-9325695 Msa0236360:CDS 35.0%
TGAACTATAAGAGCAACAAC+TGG + chr2_2:9325985-9326004 Msa0236360:intron 35.0%
GAACTATAAGAGCAACAACT+GGG + chr2_2:9325986-9326005 Msa0236360:intron 35.0%
TAAGCATTAGGAGACAAGTA+AGG - chr2_2:9326028-9326047 None:intergenic 35.0%
TACTTGTCTCCTAATGCTTA+TGG + chr2_2:9326028-9326047 Msa0236360:CDS 35.0%
TTATGGATCGGTGATTCTAA+AGG + chr2_2:9326045-9326064 Msa0236360:CDS 35.0%
TATGGATCGGTGATTCTAAA+GGG + chr2_2:9326046-9326065 Msa0236360:CDS 35.0%
GATGCCCTAATAATTGAACT+TGG - chr2_2:9326167-9326186 None:intergenic 35.0%
! TAGGGCATCAAAATTCAACT+AGG + chr2_2:9326178-9326197 Msa0236360:intron 35.0%
!!! TATGCCGACTTTATTTTGTG+CGG - chr2_2:9326549-9326568 None:intergenic 35.0%
ATTCGAAGTCTACATTCGTA+AGG - chr2_2:9326703-9326722 None:intergenic 35.0%
CGAATTAGATTCGAAGAATG+TGG + chr2_2:9326718-9326737 Msa0236360:intron 35.0%
ACTAAGGGAGAAGATTTCTT+GGG + chr2_2:9326755-9326774 Msa0236360:intron 35.0%
AAAATGAGGTTTCCCAGTTA+AGG + chr2_2:9326864-9326883 Msa0236360:intron 35.0%
GTGGAAACTAACTTTAGATG+TGG - chr2_2:9326893-9326912 None:intergenic 35.0%
ATGATGGTCACAAATGATTC+TGG - chr2_2:9327262-9327281 None:intergenic 35.0%
TGGTAAATGTTGGTCCTATT+GGG + chr2_2:9327466-9327485 Msa0236360:CDS 35.0%
ATACATGGTATACACCCAAT+AGG - chr2_2:9327483-9327502 None:intergenic 35.0%
GGGTTTAAATCTCTCATACA+TGG - chr2_2:9327498-9327517 None:intergenic 35.0%
GGGTGTTAAATAATTGAGCT+AGG - chr2_2:9327557-9327576 None:intergenic 35.0%
CTCAACAAGGTTCTTCAATT+GGG - chr2_2:9327577-9327596 None:intergenic 35.0%
GGAATTGAGGACAAATTTGA+AGG + chr2_2:9327596-9327615 Msa0236360:CDS 35.0%
ATTGATTAACTGTTATGCCC+TGG + chr2_2:9327745-9327764 Msa0236360:intron 35.0%
ACGTTCTGCAATGATAACAT+TGG - chr2_2:9328115-9328134 None:intergenic 35.0%
AAGAGTTGCCAAACATTTGT+AGG - chr2_2:9328168-9328187 None:intergenic 35.0%
CCATTACAAAAACGACCTGT+GGG - chr2_2:9325655-9325674 None:intergenic 40.0%
TCCATTACAAAAACGACCTG+TGG - chr2_2:9325656-9325675 None:intergenic 40.0%
TAGGCTATGAAGCACAGATA+CGG + chr2_2:9325754-9325773 Msa0236360:intron 40.0%
GTCTCCTAATGCTTATGGAT+CGG + chr2_2:9326033-9326052 Msa0236360:CDS 40.0%
ATCACCGATCCATAAGCATT+AGG - chr2_2:9326040-9326059 None:intergenic 40.0%
GCTGGAATTCTCAATTACAC+TGG + chr2_2:9326091-9326110 Msa0236360:CDS 40.0%
TGGCATGATACATCAAACGA+TGG + chr2_2:9326502-9326521 Msa0236360:intron 40.0%
GGCATGATACATCAAACGAT+GGG + chr2_2:9326503-9326522 Msa0236360:intron 40.0%
ATACATCAAACGATGGGACA+TGG + chr2_2:9326509-9326528 Msa0236360:intron 40.0%
!!! ATGCCGACTTTATTTTGTGC+GGG - chr2_2:9326548-9326567 None:intergenic 40.0%
GCACAAAATAAAGTCGGCAT+AGG + chr2_2:9326548-9326567 Msa0236360:intron 40.0%
GTTCACACAAGTGAAGCTAT+TGG + chr2_2:9326641-9326660 Msa0236360:intron 40.0%
CACTAAGGGAGAAGATTTCT+TGG + chr2_2:9326754-9326773 Msa0236360:intron 40.0%
TAGATGTGGATGCCTTAACT+GGG - chr2_2:9326879-9326898 None:intergenic 40.0%
TTAGATGTGGATGCCTTAAC+TGG - chr2_2:9326880-9326899 None:intergenic 40.0%
GTTGCATGATGCAACAATTG+TGG - chr2_2:9326980-9326999 None:intergenic 40.0%
TCTCTCTTCACAGTAGCATT+TGG + chr2_2:9327169-9327188 Msa0236360:CDS 40.0%
! CTTGATAACTATTTGGCACC+TGG + chr2_2:9327205-9327224 Msa0236360:CDS 40.0%
!! AATTGCCACTCTGGAATTGA+GGG - chr2_2:9327232-9327251 None:intergenic 40.0%
!! TAATTGCCACTCTGGAATTG+AGG - chr2_2:9327233-9327252 None:intergenic 40.0%
AGGAGCCAGAAAAATTGTTG+TGG + chr2_2:9327446-9327465 Msa0236360:CDS 40.0%
GTGGTAAATGTTGGTCCTAT+TGG + chr2_2:9327465-9327484 Msa0236360:CDS 40.0%
CACACTTGTCTCCAGAAAAT+GGG - chr2_2:9327518-9327537 None:intergenic 40.0%
ACACACTTGTCTCCAGAAAA+TGG - chr2_2:9327519-9327538 None:intergenic 40.0%
CCTCAACAAGGTTCTTCAAT+TGG - chr2_2:9327578-9327597 None:intergenic 40.0%
CCAATTGAAGAACCTTGTTG+AGG + chr2_2:9327575-9327594 Msa0236360:CDS 40.0%
AGAACCTTGTTGAGGAATTG+AGG + chr2_2:9327583-9327602 Msa0236360:CDS 40.0%
TTGTCCTCAATTCCTCAACA+AGG - chr2_2:9327590-9327609 None:intergenic 40.0%
TGGAGATGCTTACCACATTA+TGG + chr2_2:9327635-9327654 Msa0236360:CDS 40.0%
ATAACATTGGCAGCATCACT+AGG - chr2_2:9328102-9328121 None:intergenic 40.0%
GGTGATTCTTTGCTCGATGT+AGG + chr2_2:9325562-9325581 Msa0236360:CDS 45.0%
!!! CCCACAGGTCGTTTTTGTAA+TGG + chr2_2:9325652-9325671 Msa0236360:CDS 45.0%
!! TACAAGTGTCGGTGTCATGT+CGG + chr2_2:9325845-9325864 Msa0236360:intron 45.0%
ACACGACACATGTCCAACAT+CGG + chr2_2:9325874-9325893 Msa0236360:intron 45.0%
GCATTAGGAGACAAGTAAGG+AGG - chr2_2:9326025-9326044 None:intergenic 45.0%
AATTATGCTTCTGCTGCAGC+TGG + chr2_2:9326073-9326092 Msa0236360:CDS 45.0%
!!! CTTTATTTTGTGCGGGGGAA+GGG - chr2_2:9326541-9326560 None:intergenic 45.0%
!!! ACTTTATTTTGTGCGGGGGA+AGG - chr2_2:9326542-9326561 None:intergenic 45.0%
TCCCCCGCACAAAATAAAGT+CGG + chr2_2:9326542-9326561 Msa0236360:intron 45.0%
!!! TGCCGACTTTATTTTGTGCG+GGG - chr2_2:9326547-9326566 None:intergenic 45.0%
GGAGACAATAATTGCCACTC+TGG - chr2_2:9327241-9327260 None:intergenic 45.0%
TTGCAGCGGTTATTCACTCT+AGG + chr2_2:9327426-9327445 Msa0236360:intron 45.0%
GAGCTAGGTGATTAGGGAAT+TGG - chr2_2:9327542-9327561 None:intergenic 45.0%
TCTGCATGTTGTCACCTAGT+TGG + chr2_2:9327991-9328010 Msa0236360:CDS 45.0%
TGTCACCTAGTTGGTCGATT+TGG + chr2_2:9328000-9328019 Msa0236360:CDS 45.0%
CACGACACATGTCCAACATC+GGG + chr2_2:9325875-9325894 Msa0236360:intron 50.0%
GATTATGCGTGTCCCGATGT+TGG - chr2_2:9325890-9325909 None:intergenic 50.0%
ATCGGGACACGCATAATCTG+AGG + chr2_2:9325892-9325911 Msa0236360:intron 50.0%
!!! GCCGACTTTATTTTGTGCGG+GGG - chr2_2:9326546-9326565 None:intergenic 50.0%
!! CACCTAGTTGGTCGATTTGG+AGG + chr2_2:9328003-9328022 Msa0236360:CDS 50.0%
AGCCTCCAAATCGACCAACT+AGG - chr2_2:9328008-9328027 None:intergenic 50.0%
GCACAGATACGGACACGACA+CGG + chr2_2:9325765-9325784 Msa0236360:intron 55.0%
!! TGTCGGTGTCATGTCGGTGT+CGG + chr2_2:9325851-9325870 Msa0236360:intron 55.0%
!! CACTCTGGAATTGAGGGACC+AGG - chr2_2:9327226-9327245 None:intergenic 55.0%
CTGGTCCCTCAATTCCAGAG+TGG + chr2_2:9327224-9327243 Msa0236360:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9325401 9328234 9325401 ID=Msa0236360;Name=Msa0236360
chr2_2 mRNA 9325401 9328234 9325401 ID=Msa0236360-mRNA-1;Parent=Msa0236360;Name=Msa0236360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=44|1|1|1|1|1|5|37|368
chr2_2 exon 9325401 9325697 9325401 ID=Msa0236360-mRNA-1:exon:4030;Parent=Msa0236360-mRNA-1
chr2_2 exon 9325996 9326123 9325996 ID=Msa0236360-mRNA-1:exon:4031;Parent=Msa0236360-mRNA-1
chr2_2 exon 9327064 9327309 9327064 ID=Msa0236360-mRNA-1:exon:4032;Parent=Msa0236360-mRNA-1
chr2_2 exon 9327432 9327687 9327432 ID=Msa0236360-mRNA-1:exon:4033;Parent=Msa0236360-mRNA-1
chr2_2 exon 9327974 9328234 9327974 ID=Msa0236360-mRNA-1:exon:4034;Parent=Msa0236360-mRNA-1
chr2_2 five_prime_UTR 9325401 9325444 9325401 ID=Msa0236360-mRNA-1:five_prime_utr;Parent=Msa0236360-mRNA-1
chr2_2 CDS 9325445 9325697 9325445 ID=Msa0236360-mRNA-1:cds;Parent=Msa0236360-mRNA-1
chr2_2 CDS 9325996 9326123 9325996 ID=Msa0236360-mRNA-1:cds;Parent=Msa0236360-mRNA-1
chr2_2 CDS 9327064 9327309 9327064 ID=Msa0236360-mRNA-1:cds;Parent=Msa0236360-mRNA-1
chr2_2 CDS 9327432 9327687 9327432 ID=Msa0236360-mRNA-1:cds;Parent=Msa0236360-mRNA-1
chr2_2 CDS 9327974 9328197 9327974 ID=Msa0236360-mRNA-1:cds;Parent=Msa0236360-mRNA-1
chr2_2 three_prime_UTR 9328198 9328234 9328198 ID=Msa0236360-mRNA-1:three_prime_utr;Parent=Msa0236360-mRNA-1
Gene Sequence

>Msa0236360

ATGGGTCTTTATAATTTGAGCATAAAACTCATTTTTGAGAATATGTTTAGGATTTTAACGTTATTGCTCTCTTTCAAATTTAGCTTATCAAATAAAATCCAAGCTTCATTTGTTTTTGGTGATTCTTTGCTCGATGTAGGAAATAACAATTACATCACTTCACTTGCCAAAGCAAATCATCACCCTTTTGGAATTGATTTTGGAAAACCCACAGGTCGTTTTTGTAATGGAAGAACCGTTGTTGATGTTATAGAGCAACAACTGGGTCTTGATTATACTCCTCCTTACTTGTCTCCTAATGCTTATGGATCGGTGATTCTAAAGGGTGTCAATTATGCTTCTGCTGCAGCTGGAATTCTCAATTACACTGGTCACATTTTTGTTGGTCGAATCAACTTTGATGCACAAATTGATAACTTTGCAAATACAAGAGAAGATATCATTAGCAAAATTGGTGTTCGTGCAGCTCTCAAATTGCTTAAGAATTCTCTCTTCACAGTAGCATTTGGCTCAAACGATTTTCTTGATAACTATTTGGCACCTGGTCCCTCAATTCCAGAGTGGCAATTATTGTCTCCAGAATCATTTGTGACCATCATGATATCAACATTCAGAGTACAAATAACCCGGTTATTCACTCTAGGAGCCAGAAAAATTGTTGTGGTAAATGTTGGTCCTATTGGGTGTATACCATGTATGAGAGATTTAAACCCATTTTCTGGAGACAAGTGTGTCCAATTCCCTAATCACCTAGCTCAATTATTTAACACCCAATTGAAGAACCTTGTTGAGGAATTGAGGACAAATTTGAAGGGTTCATTATTTGTTCATGGAGATGCTTACCACATTATGGAAGATATCATGATGAATTACAGTAAATATGGTTTCAAGAATACAAATTCTGCATGTTGTCACCTAGTTGGTCGATTTGGAGGCTTAATTCCATGTGATCGTTATTCAAAAGTTTGTGAAGATCGATCCAAGTATATTTATTGGGATACTTTTCATCCTAGTGATGCTGCCAATGTTATCATTGCAGAACGTTTATTAAATGGCGATGCTAATGATGTTTCACCTACAAATGTTTGGCAACTCTTGAAAGCTTGA
Protein sequence

>Msa0236360

MGLYNLSIKLIFENMFRILTLLLSFKFSLSNKIQASFVFGDSLLDVGNNNYITSLAKANHHPFGIDFGKPTGRFCNGRTVVDVIEQQLGLDYTPPYLSPNAYGSVILKGVNYASAAAGILNYTGHIFVGRINFDAQIDNFANTREDIISKIGVRAALKLLKNSLFTVAFGSNDFLDNYLAPGPSIPEWQLLSPESFVTIMISTFRVQITRLFTLGARKIVVVNVGPIGCIPCMRDLNPFSGDKCVQFPNHLAQLFNTQLKNLVEELRTNLKGSLFVHGDAYHIMEDIMMNYSKYGFKNTNSACCHLVGRFGGLIPCDRYSKVCEDRSKYIYWDTFHPSDAANVIIAERLLNGDANDVSPTNVWQLLKA*