AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319610 MtrunA17_Chr2g0294301 95.109 368 18 0 1 368 1 368 0.0 724
Msa0319610 MtrunA17_Chr2g0294311 63.158 361 121 2 18 368 15 373 2.57e-166 469
Msa0319610 MtrunA17_Chr4g0068441 61.789 369 139 2 1 368 1 368 5.63e-166 468
Msa0319610 MtrunA17_Chr8g0374101 47.253 364 180 4 14 365 10 373 8.19e-115 338
Msa0319610 MtrunA17_Chr3g0077571 41.598 363 203 6 6 367 2 356 1.48e-90 276
Msa0319610 MtrunA17_Chr2g0285061 40.960 354 201 7 18 367 15 364 5.53e-87 267
Msa0319610 MtrunA17_Chr8g0380041 40.111 359 206 7 14 367 8 362 1.33e-85 263
Msa0319610 MtrunA17_Chr5g0434621 42.320 319 175 5 36 351 26 338 9.04e-84 258
Msa0319610 MtrunA17_Chr3g0086641 39.216 357 208 7 15 367 18 369 1.40e-82 256
Msa0319610 MtrunA17_Chr3g0092131 44.340 318 168 7 37 350 25 337 2.80e-82 255
Msa0319610 MtrunA17_Chr3g0131321 40.176 341 192 4 34 367 33 368 1.08e-81 254
Msa0319610 MtrunA17_Chr4g0060811 43.396 318 171 7 37 350 29 341 3.86e-81 252
Msa0319610 MtrunA17_Chr4g0017431 36.813 364 224 4 8 367 1 362 2.06e-80 250
Msa0319610 MtrunA17_Chr1g0182811 35.967 367 230 4 3 366 1 365 9.21e-78 243
Msa0319610 MtrunA17_Chr1g0189931 36.464 362 225 4 7 366 4 362 4.53e-77 241
Msa0319610 MtrunA17_Chr7g0275021 38.462 338 203 4 31 366 30 364 8.60e-77 241
Msa0319610 MtrunA17_Chr5g0444401 36.441 354 208 6 24 368 17 362 1.39e-76 240
Msa0319610 MtrunA17_Chr7g0274991 35.795 352 220 5 18 366 15 363 7.94e-74 233
Msa0319610 MtrunA17_Chr1g0189901 36.182 351 219 4 18 366 14 361 1.45e-73 233
Msa0319610 MtrunA17_Chr7g0275001 36.782 348 216 3 21 366 11 356 3.48e-73 231
Msa0319610 MtrunA17_Chr7g0275011 36.338 355 221 4 14 366 13 364 1.43e-71 228
Msa0319610 MtrunA17_Chr3g0077581 40.597 335 188 10 37 365 38 367 6.55e-71 226
Msa0319610 MtrunA17_Chr4g0008851 35.988 339 210 5 32 366 29 364 4.22e-69 221
Msa0319610 MtrunA17_Chr3g0099161 36.620 355 208 6 21 366 78 424 3.58e-68 220
Msa0319610 MtrunA17_Chr3g0099231 35.028 354 214 6 21 366 14 359 4.67e-68 219
Msa0319610 MtrunA17_Chr3g0099151 36.096 374 218 9 5 366 56 420 2.09e-67 218
Msa0319610 MtrunA17_Chr7g0215961 35.015 337 201 5 32 366 30 350 2.62e-66 213
Msa0319610 MtrunA17_Chr1g0189891 35.556 360 214 8 16 366 4 354 7.07e-66 213
Msa0319610 MtrunA17_Chr6g0457921 35.435 333 209 4 37 366 31 360 3.49e-64 208
Msa0319610 MtrunA17_Chr5g0396511 35.737 319 200 3 37 353 48 363 6.37e-64 208
Msa0319610 MtrunA17_Chr3g0085881 39.823 339 177 9 37 368 35 353 1.40e-61 201
Msa0319610 MtrunA17_Chr3g0120861 34.969 326 201 7 30 350 33 352 3.25e-61 201
Msa0319610 MtrunA17_Chr1g0156921 34.473 351 214 8 1 340 1 346 4.46e-61 200
Msa0319610 MtrunA17_Chr2g0301641 33.918 342 207 9 35 366 43 375 6.72e-61 201
Msa0319610 MtrunA17_Chr5g0438641 35.447 347 213 7 9 350 6 346 1.85e-60 198
Msa0319610 MtrunA17_Chr2g0330781 34.783 322 202 6 33 350 29 346 2.71e-60 198
Msa0319610 MtrunA17_Chr3g0105401 34.615 338 211 7 19 351 12 344 3.55e-60 197
Msa0319610 MtrunA17_Chr5g0438621 34.320 338 211 7 18 350 13 344 6.10e-60 197
Msa0319610 MtrunA17_Chr5g0432101 35.159 347 212 8 10 349 8 348 8.56e-60 197
Msa0319610 MtrunA17_Chr1g0156931 35.093 322 200 6 33 351 39 354 2.20e-59 196
Msa0319610 MtrunA17_Chr8g0341001 34.146 328 208 6 27 350 24 347 1.27e-58 194
Msa0319610 MtrunA17_Chr8g0371481 33.846 325 199 10 35 351 41 357 2.08e-58 193
Msa0319610 MtrunA17_Chr8g0371471 32.416 327 210 7 35 356 41 361 6.24e-57 189
Msa0319610 MtrunA17_Chr2g0320671 32.609 322 208 7 33 350 28 344 9.96e-56 186
Msa0319610 MtrunA17_Chr1g0156911 33.718 347 214 6 11 346 5 346 1.07e-55 186
Msa0319610 MtrunA17_Chr3g0142921 35.514 321 194 8 35 351 36 347 2.69e-55 185
Msa0319610 MtrunA17_Chr2g0284991 36.223 323 190 10 31 349 29 339 5.15e-55 185
Msa0319610 MtrunA17_Chr2g0284921 38.730 315 175 10 37 346 36 337 2.07e-54 183
Msa0319610 MtrunA17_Chr8g0380031 34.218 339 206 9 32 367 81 405 3.02e-54 184
Msa0319610 MtrunA17_Chr2g0284951 37.846 325 182 11 31 351 29 337 8.03e-54 181
Msa0319610 MtrunA17_Chr3g0085231 33.154 371 213 12 3 368 10 350 8.89e-54 181
Msa0319610 MtrunA17_Chr4g0027521 34.756 328 196 9 33 350 25 344 2.45e-53 180
Msa0319610 MtrunA17_Chr8g0370951 31.768 362 233 8 15 367 11 367 4.39e-53 179
Msa0319610 MtrunA17_Chr1g0156901 33.542 319 204 5 26 341 41 354 1.00e-52 179
Msa0319610 MtrunA17_Chr5g0438631 31.361 338 222 7 18 350 11 343 2.24e-52 177
Msa0319610 MtrunA17_Chr3g0142941 34.936 312 193 6 33 340 45 350 9.77e-52 176
Msa0319610 MtrunA17_Chr2g0283191 33.526 346 209 9 12 341 12 352 4.04e-51 174
Msa0319610 MtrunA17_Chr8g0371491 33.043 345 220 7 18 356 17 356 5.82e-51 174
Msa0319610 MtrunA17_Chr5g0420811 34.412 340 197 10 18 348 12 334 1.89e-50 172
Msa0319610 MtrunA17_Chr5g0405831 30.303 363 237 8 5 356 7 364 7.54e-50 171
Msa0319610 MtrunA17_Chr2g0285001 35.015 337 195 13 21 346 14 337 3.77e-49 169
Msa0319610 MtrunA17_Chr2g0284941 34.637 358 190 13 8 355 1 324 5.84e-49 168
Msa0319610 MtrunA17_Chr8g0349341 30.702 342 214 8 35 367 37 364 1.34e-48 167
Msa0319610 MtrunA17_Chr8g0344941 31.319 364 226 10 5 355 9 361 1.91e-48 167
Msa0319610 MtrunA17_Chr8g0370981 28.916 415 229 10 10 366 11 417 2.11e-48 169
Msa0319610 MtrunA17_Chr1g0156891 33.227 313 200 7 33 341 41 348 4.90e-48 166
Msa0319610 MtrunA17_Chr4g0046151 31.476 359 216 11 15 352 17 366 8.85e-48 166
Msa0319610 MtrunA17_Chr5g0405821 30.000 370 233 10 8 356 1 365 1.70e-47 165
Msa0319610 MtrunA17_Chr8g0349321 31.977 344 207 11 35 367 37 364 1.63e-44 157
Msa0319610 MtrunA17_Chr8g0344931 31.884 345 214 9 29 367 31 360 3.11e-43 153
Msa0319610 MtrunA17_Chr5g0437421 31.250 320 200 10 31 338 28 339 3.31e-41 148
Msa0319610 MtrunA17_Chr8g0349331 30.571 350 186 10 29 367 29 332 5.40e-41 147
Msa0319610 MtrunA17_Chr1g0157001 28.182 330 228 4 40 366 41 364 8.49e-40 145
Msa0319610 MtrunA17_Chr8g0352901 31.909 351 195 11 35 356 28 363 3.10e-37 137
Msa0319610 MtrunA17_Chr6g0459921 33.197 244 155 7 127 367 122 360 6.01e-37 137
Msa0319610 MtrunA17_Chr6g0455661 32.636 239 154 6 131 367 238 471 5.93e-36 136
Msa0319610 MtrunA17_Chr6g0455661 52.459 122 53 4 9 128 5 123 4.55e-27 111
Msa0319610 MtrunA17_Chr7g0226931 27.820 399 217 11 15 358 9 391 2.58e-35 133
Msa0319610 MtrunA17_Chr8g0370961 29.839 248 161 6 122 365 4 242 6.31e-35 128
Msa0319610 MtrunA17_Chr8g0349301 31.525 295 183 8 26 316 28 307 6.89e-35 130
Msa0319610 MtrunA17_Chr7g0271551 30.973 339 198 13 30 351 31 350 8.20e-35 131
Msa0319610 MtrunA17_Chr6g0450731 29.970 337 204 11 35 356 33 352 3.68e-34 129
Msa0319610 MtrunA17_Chr7g0254461 28.490 351 211 10 35 356 43 382 4.46e-34 130
Msa0319610 MtrunA17_Chr6g0450721 29.973 367 207 13 14 352 2 346 4.98e-33 126
Msa0319610 MtrunA17_Chr7g0275291 27.143 350 213 9 34 356 32 366 6.04e-33 126
Msa0319610 MtrunA17_Chr7g0226911 27.577 388 227 11 10 356 1 375 3.69e-32 124
Msa0319610 MtrunA17_Chr8g0381581 28.986 345 216 10 35 356 40 378 3.24e-31 122
Msa0319610 MtrunA17_Chr6g0450701 30.709 381 219 13 7 356 3 369 5.81e-31 121
Msa0319610 MtrunA17_Chr8g0347751 28.165 387 225 15 7 356 3 373 6.08e-31 121
Msa0319610 MtrunA17_Chr1g0160101 28.286 350 210 12 35 356 42 378 1.73e-30 120
Msa0319610 MtrunA17_Chr2g0283531 30.133 375 206 14 16 352 3 359 2.51e-30 119
Msa0319610 MtrunA17_Chr1g0160011 28.902 346 210 11 35 356 40 373 4.60e-30 119
Msa0319610 MtrunA17_Chr4g0027571 31.336 217 142 4 136 350 3 214 6.16e-30 114
Msa0319610 MtrunA17_Chr1g0159971 28.684 380 225 12 13 356 13 382 8.23e-30 118
Msa0319610 MtrunA17_Chr1g0159981 29.700 367 218 12 18 356 27 381 5.11e-29 116
Msa0319610 MtrunA17_Chr1g0159991 30.259 347 206 12 35 356 36 371 1.05e-28 115
Msa0319610 MtrunA17_Chr1g0160031 28.406 345 213 10 35 356 39 372 1.92e-28 114
Msa0319610 MtrunA17_Chr7g0273101 28.382 377 203 15 21 356 15 365 1.10e-27 112
Msa0319610 MtrunA17_Chr1g0189921 47.541 122 56 2 18 137 14 129 4.19e-27 105
Msa0319610 MtrunA17_Chr3g0104821 28.152 341 213 9 34 352 43 373 4.29e-27 110
Msa0319610 MtrunA17_Chr2g0301581 29.972 357 202 14 19 352 15 346 1.50e-26 108
Msa0319610 MtrunA17_Chr7g0226941 28.775 351 221 10 28 356 26 369 2.93e-26 108
Msa0319610 MtrunA17_Chr6g0450711 29.630 351 198 13 35 356 122 452 3.16e-26 108
Msa0319610 MtrunA17_Chr2g0283481 27.300 337 214 13 37 352 49 375 3.32e-26 108
Msa0319610 MtrunA17_Chr0c01g0489581 30.473 338 194 13 34 352 29 344 5.25e-26 107
Msa0319610 MtrunA17_Chr0c01g0489571 30.473 338 194 13 34 352 29 344 1.01e-25 106
Msa0319610 MtrunA17_Chr5g0440501 29.018 224 146 5 132 347 10 228 1.15e-25 103
Msa0319610 MtrunA17_Chr2g0317271 30.473 338 194 14 34 352 29 344 1.60e-25 105
Msa0319610 MtrunA17_Chr4g0057991 26.703 367 225 12 12 353 16 363 2.15e-25 105
Msa0319610 MtrunA17_Chr1g0198351 28.391 317 185 14 37 339 45 333 3.13e-25 104
Msa0319610 MtrunA17_Chr8g0339251 30.503 318 177 10 35 330 28 323 5.69e-25 103
Msa0319610 MtrunA17_Chr1g0198381 27.385 325 199 13 37 349 4 303 5.95e-25 103
Msa0319610 MtrunA17_Chr2g0301541 29.412 357 204 14 19 352 15 346 7.19e-25 103
Msa0319610 MtrunA17_Chr2g0317261 30.178 338 195 14 34 352 29 344 1.29e-24 103
Msa0319610 MtrunA17_Chr1g0178931 28.435 313 195 12 37 341 39 330 1.86e-24 102
Msa0319610 MtrunA17_Chr1g0191461 27.954 347 202 13 35 350 31 360 2.71e-24 102
Msa0319610 MtrunA17_Chr2g0283501 26.648 364 231 12 13 352 9 360 1.48e-23 100
Msa0319610 MtrunA17_Chr7g0266061 28.438 320 195 11 33 341 40 336 1.69e-23 100
Msa0319610 MtrunA17_Chr2g0283511 27.035 344 202 13 40 352 36 361 3.20e-23 99.8
Msa0319610 MtrunA17_Chr7g0229581 36.170 141 88 2 211 350 8 147 1.65e-22 92.8
Msa0319610 MtrunA17_Chr3g0093031 27.536 345 207 11 34 352 29 356 1.69e-22 97.4
Msa0319610 MtrunA17_Chr7g0229591 36.000 150 92 3 33 179 28 176 2.20e-22 94.0
Msa0319610 MtrunA17_Chr3g0112821 28.152 341 205 12 34 352 29 351 3.19e-22 96.7
Msa0319610 MtrunA17_Chr2g0321991 46.364 110 52 3 16 118 10 119 5.56e-20 84.7
Msa0319610 MtrunA17_Chr8g0370971 42.975 121 59 4 15 125 15 135 9.79e-20 85.5
Msa0319610 MtrunA17_Chr1g0189911 30.822 146 98 3 222 366 1 144 2.83e-18 80.9
Msa0319610 MtrunA17_Chr6g0469511 47.191 89 44 2 33 118 28 116 6.57e-18 79.7
Msa0319610 MtrunA17_Chr4g0027561 42.574 101 55 2 33 130 28 128 3.43e-17 77.8
Msa0319610 MtrunA17_Chr2g0301571 28.819 288 163 11 84 352 38 302 3.11e-16 78.6
Msa0319610 MtrunA17_Chr2g0301551 28.819 288 163 11 84 352 38 302 3.79e-16 78.6
Msa0319610 MtrunA17_Chr1g0198391 24.706 340 188 14 37 339 35 343 1.42e-15 77.4
Msa0319610 MtrunA17_Chr6g0469521 33.088 136 81 2 201 331 22 152 2.43e-15 72.8
Msa0319610 MtrunA17_Chr3g0096551 25.414 362 205 13 34 352 28 367 3.31e-15 76.3
Msa0319610 MtrunA17_Chr4g0018571 35.484 155 88 4 201 350 23 170 5.12e-15 72.4
Msa0319610 MtrunA17_Chr3g0112691 26.301 346 208 12 34 352 29 354 7.69e-15 75.1
Msa0319610 MtrunA17_Chr7g0228261 37.037 81 50 1 286 366 11 90 1.54e-12 63.2
Msa0319610 MtrunA17_Chr2g0308201 44.928 69 37 1 19 86 19 87 1.55e-11 60.5
Msa0319610 MtrunA17_Chr4g0018561 55.769 52 21 1 33 82 28 79 2.83e-11 59.7
Msa0319610 MtrunA17_Chr5g0432081 41.935 62 35 1 288 349 3 63 3.33e-11 58.9
Msa0319610 MtrunA17_Chr3g0104801 36.364 88 55 1 34 120 43 130 4.51e-11 61.2
Msa0319610 MtrunA17_Chr2g0284931 24.681 235 146 8 136 367 13 219 7.16e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319610 AT2G23540.1 46.903 339 174 3 33 365 46 384 1.02e-112 334
Msa0319610 AT3G50400.1 47.647 340 171 4 33 365 32 371 2.70e-111 330
Msa0319610 AT5G15720.1 46.154 338 173 5 35 367 30 363 2.48e-95 289
Msa0319610 AT4G16230.1 55.102 245 108 2 10 252 4 248 1.80e-90 272
Msa0319610 AT5G41890.1 41.547 349 179 7 35 365 31 372 4.78e-89 273
Msa0319610 AT1G29660.1 42.210 353 197 6 18 367 15 363 5.10e-89 273
Msa0319610 AT1G71691.2 44.776 335 176 6 33 365 53 380 6.85e-89 273
Msa0319610 AT1G29670.1 41.944 360 192 10 18 367 10 362 4.92e-87 267
Msa0319610 AT1G29670.2 41.944 360 192 10 18 367 78 430 7.25e-86 266
Msa0319610 AT1G71250.1 39.104 335 201 3 32 365 38 370 4.20e-83 258
Msa0319610 AT5G45670.1 42.643 333 183 7 37 365 31 359 1.07e-82 256
Msa0319610 AT4G18970.1 41.791 335 187 7 37 367 30 360 3.27e-81 252
Msa0319610 AT5G08460.1 40.828 338 193 4 35 367 49 384 1.79e-80 251
Msa0319610 AT5G37690.1 41.195 318 178 5 36 350 28 339 3.88e-80 249
Msa0319610 AT4G18970.2 41.791 335 187 7 37 367 30 360 4.97e-80 251
Msa0319610 AT1G74460.1 42.320 319 175 8 36 350 24 337 2.84e-77 243
Msa0319610 AT5G37690.2 39.623 318 175 6 36 350 28 331 7.26e-73 231
Msa0319610 AT5G15720.2 47.744 266 131 4 35 295 30 292 8.78e-73 229
Msa0319610 AT4G10950.2 35.988 339 211 4 33 368 69 404 2.82e-72 231
Msa0319610 AT1G33811.1 38.416 341 191 10 21 347 15 350 6.59e-70 224
Msa0319610 AT4G10950.1 35.988 339 207 5 33 368 69 400 8.35e-70 224
Msa0319610 AT4G28780.1 33.803 355 226 4 18 366 10 361 1.00e-69 223
Msa0319610 AT1G71691.3 47.925 265 130 5 33 295 53 311 3.65e-69 220
Msa0319610 AT5G18430.1 34.066 364 231 6 6 366 3 360 7.31e-69 221
Msa0319610 AT3G04290.1 36.336 333 207 4 32 362 26 355 9.10e-69 221
Msa0319610 AT5G33370.1 34.627 335 214 4 34 366 29 360 5.19e-67 216
Msa0319610 AT5G15720.3 40.830 289 162 5 84 367 48 332 2.37e-66 213
Msa0319610 AT1G71691.1 39.789 284 163 5 83 365 3 279 3.25e-64 206
Msa0319610 AT2G04570.1 36.232 345 208 9 13 351 5 343 2.46e-63 206
Msa0319610 AT5G55050.1 35.777 341 201 9 37 366 41 374 2.48e-61 201
Msa0319610 AT2G42990.1 35.777 341 203 9 18 350 10 342 3.00e-59 195
Msa0319610 AT1G75880.1 34.615 364 213 8 4 351 14 368 1.08e-58 195
Msa0319610 AT4G26790.1 33.436 326 208 6 32 353 26 346 1.89e-58 193
Msa0319610 AT4G26790.2 33.436 326 208 6 32 353 26 346 1.89e-58 193
Msa0319610 AT1G58430.1 34.188 351 200 11 9 341 5 342 2.25e-57 191
Msa0319610 AT3G16370.1 33.636 330 211 6 25 350 20 345 3.25e-57 190
Msa0319610 AT1G75880.2 34.341 364 213 9 4 351 14 367 1.13e-56 189
Msa0319610 AT5G22810.1 35.393 356 204 12 11 350 6 351 1.49e-56 189
Msa0319610 AT1G06990.1 33.230 322 203 7 35 350 37 352 6.87e-55 184
Msa0319610 AT2G31540.1 33.435 329 192 10 35 349 35 350 6.94e-55 184
Msa0319610 AT1G75890.2 35.423 319 196 8 35 348 47 360 9.89e-55 184
Msa0319610 AT3G53100.1 35.965 342 205 9 16 350 9 343 1.26e-54 183
Msa0319610 AT1G75890.3 35.423 319 196 8 35 348 76 389 1.69e-54 184
Msa0319610 AT2G19060.1 33.238 349 209 11 13 352 3 336 2.53e-54 182
Msa0319610 AT2G24560.1 34.700 317 188 9 35 341 34 341 3.80e-54 182
Msa0319610 AT4G30140.1 34.535 333 195 11 37 366 35 347 4.33e-53 179
Msa0319610 AT1G75890.1 34.441 331 196 9 35 348 47 373 5.12e-53 180
Msa0319610 AT1G20120.1 34.242 330 203 9 35 359 78 398 5.50e-53 181
Msa0319610 AT5G03820.1 34.056 323 204 6 33 350 31 349 1.37e-52 178
Msa0319610 AT1G71120.1 31.884 345 211 9 30 365 26 355 3.47e-52 177
Msa0319610 AT5G03820.2 34.568 324 201 8 33 350 59 377 4.32e-52 178
Msa0319610 AT1G53920.1 33.714 350 209 10 31 367 44 383 7.57e-52 177
Msa0319610 AT1G75900.1 32.198 323 209 7 33 351 41 357 1.98e-51 176
Msa0319610 AT2G30310.1 32.749 342 199 11 18 341 13 341 1.99e-51 175
Msa0319610 AT2G19050.1 32.184 348 213 10 13 352 3 335 4.53e-51 174
Msa0319610 AT5G42170.1 34.472 322 199 9 33 350 48 361 4.60e-50 172
Msa0319610 AT2G30220.1 34.591 318 187 10 35 341 33 340 4.85e-50 172
Msa0319610 AT5G03810.1 33.538 325 202 9 33 350 28 345 7.36e-50 171
Msa0319610 AT5G45960.1 34.062 320 192 9 31 339 43 354 9.00e-50 171
Msa0319610 AT2G40250.1 31.832 333 204 7 28 347 29 351 4.64e-49 169
Msa0319610 AT1G20132.1 33.642 324 200 8 35 351 61 376 4.89e-49 170
Msa0319610 AT4G16233.1 56.693 127 55 0 239 365 1 127 1.13e-48 161
Msa0319610 AT5G33370.2 34.091 264 170 3 34 295 29 290 1.43e-47 164
Msa0319610 AT2G19010.2 30.894 369 231 11 6 367 26 377 4.66e-47 164
Msa0319610 AT2G19010.1 32.432 333 206 10 37 367 32 347 4.99e-47 163
Msa0319610 AT5G45950.1 30.675 326 213 8 26 348 31 346 5.06e-47 164
Msa0319610 AT3G14820.1 32.822 326 206 8 29 350 26 342 7.21e-47 163
Msa0319610 AT1G73610.1 32.000 325 199 8 30 350 30 336 3.98e-46 161
Msa0319610 AT5G40990.1 31.085 341 222 5 35 367 37 372 7.56e-46 161
Msa0319610 AT1G75920.2 30.252 357 212 12 11 351 1 336 9.21e-46 160
Msa0319610 AT1G59406.1 33.642 324 201 8 33 351 28 342 1.69e-45 159
Msa0319610 AT1G59030.1 33.642 324 201 8 33 351 28 342 1.69e-45 159
Msa0319610 AT1G58725.1 33.642 324 201 8 33 351 28 342 1.69e-45 159
Msa0319610 AT3G14225.1 28.933 356 238 6 23 367 25 376 2.45e-45 160
Msa0319610 AT3G14225.2 29.096 354 236 6 23 367 25 372 3.11e-45 159
Msa0319610 AT5G63170.1 31.532 333 197 9 18 341 11 321 7.15e-45 157
Msa0319610 AT1G20135.1 31.343 335 201 11 17 341 7 322 1.31e-44 156
Msa0319610 AT2G03980.2 33.956 321 191 7 35 346 43 351 9.38e-44 155
Msa0319610 AT2G03980.3 33.956 321 191 7 35 346 43 351 9.38e-44 155
Msa0319610 AT2G03980.1 33.956 321 191 7 35 346 43 351 9.38e-44 155
Msa0319610 AT2G03980.4 33.956 321 191 7 35 346 43 351 9.38e-44 155
Msa0319610 AT1G75910.1 29.429 350 224 9 18 358 8 343 1.70e-42 151
Msa0319610 AT2G24560.2 35.018 277 162 8 35 301 34 302 3.72e-42 150
Msa0319610 AT1G75920.1 29.412 357 204 12 22 351 11 346 1.02e-41 149
Msa0319610 AT1G20130.2 30.861 337 203 8 33 351 182 506 1.19e-41 153
Msa0319610 AT1G20130.1 30.861 337 203 8 33 351 202 526 1.69e-41 152
Msa0319610 AT1G53940.2 30.409 342 223 7 35 367 39 374 9.50e-41 147
Msa0319610 AT1G23500.1 31.642 335 200 9 26 352 26 339 2.00e-40 146
Msa0319610 AT2G19050.2 34.902 255 154 7 29 281 25 269 2.33e-40 144
Msa0319610 AT1G58520.3 32.047 337 200 11 24 351 19 335 1.15e-39 144
Msa0319610 AT1G58525.1 32.047 337 200 11 24 351 19 335 1.15e-39 144
Msa0319610 AT1G53990.1 29.360 344 217 9 35 367 35 363 6.72e-39 142
Msa0319610 AT1G54790.3 29.847 392 205 14 5 356 7 368 1.90e-38 142
Msa0319610 AT1G75920.3 27.841 352 196 11 11 351 1 305 7.67e-37 135
Msa0319610 AT3G43570.1 29.944 354 199 11 6 351 1 313 2.15e-36 134
Msa0319610 AT1G75920.4 29.487 312 187 11 52 351 18 308 7.26e-36 133
Msa0319610 AT1G75930.1 30.368 326 200 12 34 350 28 335 1.32e-35 133
Msa0319610 AT3G05180.1 29.235 366 218 12 23 360 24 376 1.50e-35 134
Msa0319610 AT1G54030.1 27.083 336 217 11 34 366 51 361 3.84e-34 130
Msa0319610 AT1G67830.1 30.259 347 201 12 35 352 30 364 4.97e-34 129
Msa0319610 AT1G54790.1 28.535 389 211 14 8 356 6 367 5.87e-34 129
Msa0319610 AT4G01130.1 27.419 372 224 12 12 352 11 367 2.71e-33 127
Msa0319610 AT3G43550.1 31.633 294 189 6 6 295 1 286 8.30e-33 124
Msa0319610 AT4G16220.1 55.752 113 46 2 17 125 9 121 1.14e-32 122
Msa0319610 AT3G27950.1 28.533 368 218 13 18 356 10 361 2.04e-32 125
Msa0319610 AT1G56670.1 29.607 331 202 11 37 351 42 357 4.64e-32 124
Msa0319610 AT1G54020.2 27.545 334 217 11 37 366 35 347 5.88e-32 124
Msa0319610 AT1G09390.1 30.514 331 199 11 37 351 39 354 7.33e-31 121
Msa0319610 AT2G31550.1 31.579 209 121 6 151 349 13 209 9.21e-31 117
Msa0319610 AT2G04020.2 30.721 319 162 9 35 346 43 309 1.51e-30 119
Msa0319610 AT1G28650.1 27.882 373 231 15 20 368 22 380 9.65e-30 118
Msa0319610 AT5G14450.1 29.288 379 227 13 9 356 9 377 1.01e-29 118
Msa0319610 AT3G62280.1 30.029 343 195 13 30 350 31 350 3.48e-29 116
Msa0319610 AT2G04020.1 36.453 203 113 5 35 231 43 235 7.67e-29 113
Msa0319610 AT1G54790.2 26.747 415 211 15 8 356 6 393 1.79e-28 115
Msa0319610 AT3G26430.1 28.045 353 223 9 28 356 24 369 2.07e-28 114
Msa0319610 AT1G54000.1 26.377 345 218 11 33 365 34 354 3.87e-28 114
Msa0319610 AT1G28660.1 27.436 390 236 17 7 366 4 376 4.54e-28 113
Msa0319610 AT1G28570.1 28.152 341 203 13 39 352 38 363 5.24e-28 113
Msa0319610 AT1G28670.1 26.546 388 243 16 7 366 4 377 6.15e-28 113
Msa0319610 AT3G14210.1 28.571 343 213 13 35 366 36 357 2.09e-27 112
Msa0319610 AT1G53940.1 30.224 268 175 6 35 297 39 299 2.22e-27 110
Msa0319610 AT1G28640.1 26.685 371 228 15 20 363 20 373 2.40e-27 111
Msa0319610 AT2G27360.1 29.155 343 198 16 39 352 37 363 2.72e-27 111
Msa0319610 AT1G28580.1 28.280 343 200 14 39 352 41 366 2.80e-27 111
Msa0319610 AT3G14220.1 27.119 354 228 13 22 366 19 351 3.39e-27 110
Msa0319610 AT1G54010.1 26.023 342 217 11 37 366 38 355 6.62e-27 110
Msa0319610 AT1G31550.2 29.070 344 195 15 39 352 40 364 9.50e-27 110
Msa0319610 AT1G28660.2 27.436 390 235 18 7 366 4 375 1.13e-26 109
Msa0319610 AT3G48460.1 27.035 344 212 14 31 352 37 363 3.09e-26 108
Msa0319610 AT5G03610.1 27.673 318 191 12 37 339 45 338 3.25e-25 105
Msa0319610 AT1G28610.2 27.920 351 202 15 33 352 29 359 1.56e-24 103
Msa0319610 AT3G09930.2 29.206 315 191 11 37 339 41 335 2.79e-24 102
Msa0319610 AT3G09930.1 29.206 315 191 11 37 339 41 335 2.79e-24 102
Msa0319610 AT1G54030.2 26.792 265 169 8 34 295 51 293 5.97e-24 100
Msa0319610 AT1G28600.1 29.191 346 192 15 39 352 35 359 2.60e-23 100
Msa0319610 AT5G45910.1 29.032 372 231 15 6 352 1 364 6.21e-23 99.0
Msa0319610 AT4G01130.3 26.804 291 171 10 95 353 2 282 6.60e-23 97.8
Msa0319610 AT4G01130.2 26.733 303 188 10 12 295 11 298 1.24e-22 97.8
Msa0319610 AT1G31550.1 27.405 343 199 15 39 352 40 361 2.22e-22 97.8
Msa0319610 AT5G03600.1 27.476 313 198 10 32 338 11 300 2.93e-22 96.3
Msa0319610 AT5G03600.2 27.215 316 201 10 32 341 46 338 4.33e-22 96.7
Msa0319610 AT1G28590.1 26.036 338 214 12 39 352 40 365 9.39e-22 96.3
Msa0319610 AT1G54020.1 25.818 275 181 9 94 366 8 261 1.59e-20 90.9
Msa0319610 AT1G54020.5 25.818 275 181 9 94 366 8 261 1.59e-20 90.9
Msa0319610 AT1G54020.3 25.818 275 181 9 94 366 8 261 1.59e-20 90.9
Msa0319610 AT3G62280.2 29.577 284 159 11 30 295 31 291 9.47e-20 89.0
Msa0319610 AT1G56670.2 28.044 271 168 9 37 295 42 297 1.03e-19 89.0
Msa0319610 AT1G54020.4 26.794 209 145 5 160 366 10 212 4.30e-19 85.9
Msa0319610 AT3G14210.2 29.439 214 138 8 160 366 22 229 2.90e-17 81.3
Msa0319610 AT1G28580.2 26.207 290 172 12 88 352 13 285 9.53e-17 80.5
Msa0319610 AT1G28570.2 27.311 238 147 9 129 352 66 291 1.44e-14 74.3

Find 68 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGGTTCATTATTTGTTTA+TGG 0.155661 2_4:-19432824 Msa0319610:CDS
ACACACTTGTCTCCAGAAAA+TGG 0.189223 2_4:+19432923 None:intergenic
ATTGCAGAACGTTTATTAAA+TGG 0.214339 2_4:-19432314 Msa0319610:CDS
ATCGATCCAAGTATATTTAT+TGG 0.215394 2_4:-19432373 Msa0319610:CDS
GAAGATATCATTAGCAAAAT+TGG 0.215499 2_4:-19433333 Msa0319610:CDS
TACTTGTCTCCTAATGCTTA+TGG 0.219625 2_4:-19434699 Msa0319610:CDS
AATAATTGAGCTAGGTGATT+AGG 0.265635 2_4:+19432893 None:intergenic
CCTCAACAAGGTTCTTCAAT+TGG 0.274013 2_4:+19432864 None:intergenic
AAAGCAAATCATCACCCTTT+TGG 0.277294 2_4:-19435114 Msa0319610:CDS
TGGAGATGCTTACCACATTA+TGG 0.280362 2_4:-19432804 Msa0319610:CDS
GTGGTAAATGTTGGTCCTAT+TGG 0.311602 2_4:-19432974 Msa0319610:CDS
AGAACCGTTGTTGATGTTAT+AGG 0.319449 2_4:-19435051 Msa0319610:intron
ATAATTGAGCTAGGTGATTA+GGG 0.322500 2_4:+19432894 None:intergenic
TGGTAAATGTTGGTCCTATT+GGG 0.322655 2_4:-19432973 Msa0319610:CDS
AAGAGTTGCCAAACATTTGT+AGG 0.332790 2_4:+19432272 None:intergenic
GAGCTAGGTGATTAGGGAAT+TGG 0.335306 2_4:+19432900 None:intergenic
ATGATGAATTACAGTAAATA+TGG 0.342390 2_4:-19432773 Msa0319610:intron
TCGATCCAAGTATATTTATT+GGG 0.354002 2_4:-19432372 Msa0319610:CDS
CTCAACAAGGTTCTTCAATT+GGG 0.373272 2_4:+19432865 None:intergenic
TCTCTCTTCACAGTAGCATT+TGG 0.375070 2_4:-19433279 Msa0319610:CDS
TGTCACCTAGTTGGTCGATT+TGG 0.384428 2_4:-19432437 Msa0319610:CDS
ATGTTTCACCTACAAATGTT+TGG 0.416903 2_4:-19432280 Msa0319610:CDS
ATGATGGTCACAAATGATTC+TGG 0.426170 2_4:+19433189 None:intergenic
CACCTAGTTGGTCGATTTGG+AGG 0.427520 2_4:-19432434 Msa0319610:CDS
AAAAGGGTGATGATTTGCTT+TGG 0.428586 2_4:+19435116 None:intergenic
TGAACTATAAGAGCAACAAC+TGG 0.432737 2_4:-19434742 Msa0319610:intron
CACACTTGTCTCCAGAAAAT+GGG 0.435694 2_4:+19432924 None:intergenic
CTTGATAACTATTTGGCACC+TGG 0.437197 2_4:-19433243 Msa0319610:CDS
GCATAAAATTTCCTCTCCAA+TGG 0.437807 2_4:-19435301 Msa0319610:exon
TTTCCAAAATCAATTCCAAA+AGG 0.441043 2_4:+19435099 None:intergenic
AGAACCTTGTTGAGGAATTG+AGG 0.451494 2_4:-19432856 Msa0319610:CDS
AATTATGCTTCTGCTGCAGC+TGG 0.452909 2_4:-19434654 Msa0319610:CDS
GGAATTGAGGACAAATTTGA+AGG 0.455369 2_4:-19432843 Msa0319610:CDS
CATAAAATTTCCTCTCCAAT+GGG 0.469528 2_4:-19435300 Msa0319610:exon
ATCACCGATCCATAAGCATT+AGG 0.473986 2_4:+19434690 None:intergenic
ATACATGGTATACACCCAAT+AGG 0.480201 2_4:+19432959 None:intergenic
TAATTGCCACTCTGGAATTG+AGG 0.482479 2_4:+19433218 None:intergenic
AATTGCCACTCTGGAATTGA+GGG 0.484983 2_4:+19433219 None:intergenic
TTCCAAAATCAATTCCAAAA+GGG 0.494496 2_4:+19435100 None:intergenic
TCTGCATGTTGTCACCTAGT+TGG 0.496655 2_4:-19432446 Msa0319610:CDS
AGTATCCCAATAAATATACT+TGG 0.499989 2_4:+19432367 None:intergenic
GGGTGTTAAATAATTGAGCT+AGG 0.500038 2_4:+19432885 None:intergenic
TATGGATCGGTGATTCTAAA+GGG 0.500527 2_4:-19434681 Msa0319610:CDS
GGTGATTCTTTGCTCGATGT+AGG 0.509930 2_4:-19435165 Msa0319610:CDS
TTATGGATCGGTGATTCTAA+AGG 0.511913 2_4:-19434682 Msa0319610:CDS
GAGAAACCAAACAAAACAAG+AGG 0.517413 2_4:-19435338 None:intergenic
CTCAAATTATAAAGACCCAT+TGG 0.521109 2_4:+19435285 None:intergenic
CACTCTGGAATTGAGGGACC+AGG 0.530750 2_4:+19433225 None:intergenic
TTGCAGCGGTTATTCACTCT+AGG 0.535321 2_4:-19433013 Msa0319610:intron
GGAGACAATAATTGCCACTC+TGG 0.560416 2_4:+19433210 None:intergenic
ATAACATTGGCAGCATCACT+AGG 0.560734 2_4:+19432338 None:intergenic
AAAATTGTTGTGGTAAATGT+TGG 0.566046 2_4:-19432983 Msa0319610:CDS
GTCTCCTAATGCTTATGGAT+CGG 0.570322 2_4:-19434694 Msa0319610:CDS
GGGTTTAAATCTCTCATACA+TGG 0.580780 2_4:+19432944 None:intergenic
TAAGCATTAGGAGACAAGTA+AGG 0.583422 2_4:+19434702 None:intergenic
TCATGATATCTTCCATAATG+TGG 0.590694 2_4:+19432792 None:intergenic
GAATTGAGGACAAATTTGAA+GGG 0.595549 2_4:-19432842 Msa0319610:CDS
TTGTCCTCAATTCCTCAACA+AGG 0.598318 2_4:+19432852 None:intergenic
AGCCTCCAAATCGACCAACT+AGG 0.621062 2_4:+19432432 None:intergenic
TCTGAATGTTGATATCATGA+TGG 0.622808 2_4:+19433173 None:intergenic
CCAATTGAAGAACCTTGTTG+AGG 0.628282 2_4:-19432864 Msa0319610:CDS
GCTGGAATTCTCAATTACAC+TGG 0.641243 2_4:-19434636 Msa0319610:CDS
GCATTAGGAGACAAGTAAGG+AGG 0.648380 2_4:+19434705 None:intergenic
GAACTATAAGAGCAACAACT+GGG 0.648398 2_4:-19434741 Msa0319610:intron
ATTATAAAGACCCATTGGAG+AGG 0.658225 2_4:+19435290 None:intergenic
ACGTTCTGCAATGATAACAT+TGG 0.669402 2_4:+19432325 None:intergenic
CTTACCTATAACATCAACAA+CGG 0.672230 2_4:+19435047 None:intergenic
CTGGTCCCTCAATTCCAGAG+TGG 0.723486 2_4:-19433224 Msa0319610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTTTTTATAAACTT+TGG - chr2_4:19433850-19433869 Msa0319610:intron 10.0%
!!! TATATATTTTAATGTGTAAT+AGG - chr2_4:19435066-19435085 Msa0319610:CDS 10.0%
!!! AAATTTTATGCCAAAAAAAT+AGG + chr2_4:19432241-19432260 None:intergenic 15.0%
!! ATAAGATAAGATAATGAAAA+TGG + chr2_4:19432544-19432563 None:intergenic 15.0%
!!! CTTATCTTATGTTTATTTTT+AGG - chr2_4:19432559-19432578 Msa0319610:intron 15.0%
!!! TTCATAGTTTTTACTTTTTA+GGG - chr2_4:19432750-19432769 Msa0319610:intron 15.0%
!! TTACAATAATGATAAAAAAG+AGG - chr2_4:19433040-19433059 Msa0319610:intron 15.0%
!! TATAATGCTTAAATTGAAAA+AGG + chr2_4:19433111-19433130 None:intergenic 15.0%
!!! ATTGATTTAACAATTTTTTG+AGG + chr2_4:19433150-19433169 None:intergenic 15.0%
!! TTCAATACAATTCATTATAT+TGG + chr2_4:19433962-19433981 None:intergenic 15.0%
!! TAAAAAAAATTATTCTACCA+GGG + chr2_4:19434877-19434896 None:intergenic 15.0%
!! ATAAAAAAAATTATTCTACC+AGG + chr2_4:19434878-19434897 None:intergenic 15.0%
!!! TCATTTTTGAGAATATGTTT+AGG - chr2_4:19432297-19432316 Msa0319610:CDS 20.0%
!!! CTTCATAGTTTTTACTTTTT+AGG - chr2_4:19432749-19432768 Msa0319610:intron 20.0%
!! AAGAATGCAAAATTATAAGT+AGG + chr2_4:19433173-19433192 None:intergenic 20.0%
!!! TTCATATATTCAAGTTTTCT+AGG + chr2_4:19434432-19434451 None:intergenic 20.0%
!! ATGATGAATTACAGTAAATA+TGG - chr2_4:19434778-19434797 Msa0319610:intron 20.0%
! TTCCAAAATCAATTCCAAAA+GGG + chr2_4:19432454-19432473 None:intergenic 25.0%
! TTTCCAAAATCAATTCCAAA+AGG + chr2_4:19432455-19432474 None:intergenic 25.0%
! AAAGTAAAAACTATGAAGCA+CGG + chr2_4:19432747-19432766 None:intergenic 25.0%
! AACTAGACAACAAAAAAACA+AGG + chr2_4:19432968-19432987 None:intergenic 25.0%
! TAGTTCCAAGTTCAATTATT+AGG - chr2_4:19432983-19433002 Msa0319610:CDS 25.0%
! AGTTCCAAGTTCAATTATTA+GGG - chr2_4:19432984-19433003 Msa0319610:CDS 25.0%
! CTCACATTTACTTATACATA+TGG - chr2_4:19433074-19433093 Msa0319610:intron 25.0%
! TGTACAATATCTTCAAAATG+TGG - chr2_4:19433271-19433290 Msa0319610:CDS 25.0%
!! AAATGTGGATTAATTTCTTG+AGG - chr2_4:19433286-19433305 Msa0319610:CDS 25.0%
! GTATATAAGTTTCACACTAA+GGG - chr2_4:19433771-19433790 Msa0319610:intron 25.0%
! TCATTATATTGGTGAAAATG+TGG + chr2_4:19433951-19433970 None:intergenic 25.0%
! AAGAGAAAATTAGTTGTAGA+AGG + chr2_4:19434045-19434064 None:intergenic 25.0%
! ATTCAAATCCTCTAAATACA+TGG - chr2_4:19434114-19434133 Msa0319610:intron 25.0%
! TGAATCTTCATGTGATTAAT+AGG - chr2_4:19434145-19434164 Msa0319610:intron 25.0%
! GAAGATATCATTAGCAAAAT+TGG - chr2_4:19434218-19434237 Msa0319610:intron 25.0%
!!! CGATTTTCTTGATAACTATT+TGG - chr2_4:19434301-19434320 Msa0319610:intron 25.0%
!!! CTAGGTTTTAAGCAAAATTA+CGG + chr2_4:19434414-19434433 None:intergenic 25.0%
! ATTATTACAACTATTTGCAG+CGG - chr2_4:19434524-19434543 Msa0319610:intron 25.0%
!! ATTTACCACAACAATTTTTC+TGG + chr2_4:19434566-19434585 None:intergenic 25.0%
! AAAATTGTTGTGGTAAATGT+TGG - chr2_4:19434568-19434587 Msa0319610:intron 25.0%
! AAGGGTTCATTATTTGTTTA+TGG - chr2_4:19434727-19434746 Msa0319610:CDS 25.0%
! TGAATTACAGTAAATATGGT+AGG - chr2_4:19434782-19434801 Msa0319610:intron 25.0%
! GAATTACAGTAAATATGGTA+GGG - chr2_4:19434783-19434802 Msa0319610:intron 25.0%
! AATCTACATAGACAAAAGAA+AGG + chr2_4:19434829-19434848 None:intergenic 25.0%
! ATCGATCCAAGTATATTTAT+TGG - chr2_4:19435178-19435197 Msa0319610:CDS 25.0%
! TCGATCCAAGTATATTTATT+GGG - chr2_4:19435179-19435198 Msa0319610:CDS 25.0%
! AGTATCCCAATAAATATACT+TGG + chr2_4:19435187-19435206 None:intergenic 25.0%
! ATTGCAGAACGTTTATTAAA+TGG - chr2_4:19435237-19435256 Msa0319610:CDS 25.0%
!!! ACAAGAGGAACCTATTTTTT+TGG - chr2_4:19432228-19432247 Msa0319610:three_prime_UTR 30.0%
CATAAAATTTCCTCTCCAAT+GGG - chr2_4:19432251-19432270 Msa0319610:exon 30.0%
CTCAAATTATAAAGACCCAT+TGG + chr2_4:19432269-19432288 None:intergenic 30.0%
!! ATCCAAGCTTCATTTGTTTT+TGG - chr2_4:19432365-19432384 Msa0319610:CDS 30.0%
CTTACCTATAACATCAACAA+CGG + chr2_4:19432507-19432526 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr2_4:19432658-19432677 Msa0319610:intron 30.0%
ACAACAAAAAAACAAGGTGT+AGG + chr2_4:19432962-19432981 None:intergenic 30.0%
CATCAAAATTCAACTAGGAA+CGG - chr2_4:19433007-19433026 Msa0319610:CDS 30.0%
AGGATTGTTTAACAATGATG+TGG - chr2_4:19433306-19433325 Msa0319610:CDS 30.0%
ATGATACAACATCAAACGAT+GGG - chr2_4:19433330-19433349 Msa0319610:CDS 30.0%
AACAAGAGAAAGTCTTACTT+GGG + chr2_4:19433591-19433610 None:intergenic 30.0%
AAACAAGAGAAAGTCTTACT+TGG + chr2_4:19433592-19433611 None:intergenic 30.0%
! CTCTTGTTTAAAGATGAGAA+TGG - chr2_4:19433603-19433622 Msa0319610:intron 30.0%
GGTATATAAGTTTCACACTA+AGG - chr2_4:19433770-19433789 Msa0319610:intron 30.0%
TTGATATACTTCGATAGACT+TGG + chr2_4:19433827-19433846 None:intergenic 30.0%
TACTATGAGACAAGAAAATG+AGG - chr2_4:19433882-19433901 Msa0319610:intron 30.0%
GTGGAAACTAAATTTAGATG+TGG + chr2_4:19433932-19433951 None:intergenic 30.0%
TCATGTTACCATGTATTTAG+AGG + chr2_4:19434125-19434144 None:intergenic 30.0%
TCTTCATGTGATTAATAGGT+TGG - chr2_4:19434149-19434168 Msa0319610:intron 30.0%
TCTGAATGTTGATATCATGA+TGG + chr2_4:19434381-19434400 None:intergenic 30.0%
! AGAGATTTAAACCCATTTTC+TGG - chr2_4:19434616-19434635 Msa0319610:intron 30.0%
ATAATTGAGCTAGGTGATTA+GGG + chr2_4:19434660-19434679 None:intergenic 30.0%
AATAATTGAGCTAGGTGATT+AGG + chr2_4:19434661-19434680 None:intergenic 30.0%
GAATTGAGGACAAATTTGAA+GGG - chr2_4:19434709-19434728 Msa0319610:CDS 30.0%
TCATGATATCTTCCATAATG+TGG + chr2_4:19434762-19434781 None:intergenic 30.0%
! ACTTTTGAATAACGATCACA+TGG + chr2_4:19435150-19435169 None:intergenic 30.0%
ATGTTTCACCTACAAATGTT+TGG - chr2_4:19435271-19435290 Msa0319610:CDS 30.0%
GCATAAAATTTCCTCTCCAA+TGG - chr2_4:19432250-19432269 Msa0319610:exon 35.0%
ATTATAAAGACCCATTGGAG+AGG + chr2_4:19432264-19432283 None:intergenic 35.0%
CACCAAAAACAAATGAAGCT+TGG + chr2_4:19432370-19432389 None:intergenic 35.0%
!! AAAAGGGTGATGATTTGCTT+TGG + chr2_4:19432438-19432457 None:intergenic 35.0%
! AAAGCAAATCATCACCCTTT+TGG - chr2_4:19432437-19432456 Msa0319610:CDS 35.0%
!!! CACCCTTTTGGAATTGATTT+TGG - chr2_4:19432449-19432468 Msa0319610:CDS 35.0%
!! ATTGATTTTGGAAAACCCAC+AGG - chr2_4:19432461-19432480 Msa0319610:CDS 35.0%
AGAACCGTTGTTGATGTTAT+AGG - chr2_4:19432500-19432519 Msa0319610:intron 35.0%
TGAACTATAAGAGCAACAAC+TGG - chr2_4:19432809-19432828 Msa0319610:CDS 35.0%
GAACTATAAGAGCAACAACT+GGG - chr2_4:19432810-19432829 Msa0319610:CDS 35.0%
TAAGCATTAGGAGACAAGTA+AGG + chr2_4:19432852-19432871 None:intergenic 35.0%
TACTTGTCTCCTAATGCTTA+TGG - chr2_4:19432852-19432871 Msa0319610:CDS 35.0%
TTATGGATCGGTGATTCTAA+AGG - chr2_4:19432869-19432888 Msa0319610:CDS 35.0%
TATGGATCGGTGATTCTAAA+GGG - chr2_4:19432870-19432889 Msa0319610:CDS 35.0%
GATGCCCTAATAATTGAACT+TGG + chr2_4:19432991-19433010 None:intergenic 35.0%
! TAGGGCATCAAAATTCAACT+AGG - chr2_4:19433002-19433021 Msa0319610:CDS 35.0%
CATGATACAACATCAAACGA+TGG - chr2_4:19433329-19433348 Msa0319610:CDS 35.0%
!!! TATGCCGACTTTATTTTGTG+CGG + chr2_4:19433376-19433395 None:intergenic 35.0%
TCGGCATAGGTATTTATCTA+AGG - chr2_4:19433388-19433407 Msa0319610:intron 35.0%
TCTAAGGAGAAACTCTTGAT+TGG - chr2_4:19433404-19433423 Msa0319610:intron 35.0%
CTAAGGAGAAACTCTTGATT+GGG - chr2_4:19433405-19433424 Msa0319610:intron 35.0%
! AAACCCAACACCTCAATTTT+GGG - chr2_4:19433431-19433450 Msa0319610:intron 35.0%
TGAGTATGTGCTCAAAATTG+AGG - chr2_4:19433552-19433571 Msa0319610:intron 35.0%
ATTCGAAGTCTACATTCGTA+AGG + chr2_4:19433734-19433753 None:intergenic 35.0%
CGAATTAGATTCGAAGAATG+TGG - chr2_4:19433749-19433768 Msa0319610:intron 35.0%
ATGATGGTCACAAATGATTC+TGG + chr2_4:19434365-19434384 None:intergenic 35.0%
TGGTAAATGTTGGTCCTATT+GGG - chr2_4:19434578-19434597 Msa0319610:intron 35.0%
ATACATGGTATACACCCAAT+AGG + chr2_4:19434595-19434614 None:intergenic 35.0%
GGGTTTAAATCTCTCATACA+TGG + chr2_4:19434610-19434629 None:intergenic 35.0%
GGGTGTTAAATAATTGAGCT+AGG + chr2_4:19434669-19434688 None:intergenic 35.0%
CTCAACAAGGTTCTTCAATT+GGG + chr2_4:19434689-19434708 None:intergenic 35.0%
GGAATTGAGGACAAATTTGA+AGG - chr2_4:19434708-19434727 Msa0319610:CDS 35.0%
ATTGATTAACTGTTATGCCC+TGG - chr2_4:19434857-19434876 Msa0319610:intron 35.0%
ACGTTCTGCAATGATAACAT+TGG + chr2_4:19435229-19435248 None:intergenic 35.0%
AAGAGTTGCCAAACATTTGT+AGG + chr2_4:19435282-19435301 None:intergenic 35.0%
CCATTACAAAAACGACCTGT+GGG + chr2_4:19432479-19432498 None:intergenic 40.0%
TCCATTACAAAAACGACCTG+TGG + chr2_4:19432480-19432499 None:intergenic 40.0%
TAGGCTATGAAGCACAGATA+CGG - chr2_4:19432578-19432597 Msa0319610:intron 40.0%
GTCTCCTAATGCTTATGGAT+CGG - chr2_4:19432857-19432876 Msa0319610:CDS 40.0%
ATCACCGATCCATAAGCATT+AGG + chr2_4:19432864-19432883 None:intergenic 40.0%
GCTGGAATTCTCAATTACAC+TGG - chr2_4:19432915-19432934 Msa0319610:CDS 40.0%
!!! ATGCCGACTTTATTTTGTGC+GGG + chr2_4:19433375-19433394 None:intergenic 40.0%
GCACAAAATAAAGTCGGCAT+AGG - chr2_4:19433375-19433394 Msa0319610:CDS 40.0%
! CAAACCCAACACCTCAATTT+TGG - chr2_4:19433430-19433449 Msa0319610:intron 40.0%
TGTGCTCAAAATTGAGGTGT+TGG - chr2_4:19433558-19433577 Msa0319610:intron 40.0%
GTTGACACAAGTGAAGCTAT+TGG - chr2_4:19433672-19433691 Msa0319610:intron 40.0%
CACTAAGGGAGAAGATTTCT+TGG - chr2_4:19433785-19433804 Msa0319610:intron 40.0%
GGTTTCCCACACTTTAGTTA+AGG - chr2_4:19433903-19433922 Msa0319610:intron 40.0%
GGATGCCTTAACTAAAGTGT+GGG + chr2_4:19433911-19433930 None:intergenic 40.0%
TGGATGCCTTAACTAAAGTG+TGG + chr2_4:19433912-19433931 None:intergenic 40.0%
GTTGCATGATGCAACAATTG+TGG + chr2_4:19434083-19434102 None:intergenic 40.0%
TCTCTCTTCACAGTAGCATT+TGG - chr2_4:19434272-19434291 Msa0319610:intron 40.0%
! CTTGATAACTATTTGGCACC+TGG - chr2_4:19434308-19434327 Msa0319610:intron 40.0%
!! AATTGCCACTCTGGAATTGA+GGG + chr2_4:19434335-19434354 None:intergenic 40.0%
!! TAATTGCCACTCTGGAATTG+AGG + chr2_4:19434336-19434355 None:intergenic 40.0%
AGGAGCCAGAAAAATTGTTG+TGG - chr2_4:19434558-19434577 Msa0319610:intron 40.0%
GTGGTAAATGTTGGTCCTAT+TGG - chr2_4:19434577-19434596 Msa0319610:intron 40.0%
CACACTTGTCTCCAGAAAAT+GGG + chr2_4:19434630-19434649 None:intergenic 40.0%
ACACACTTGTCTCCAGAAAA+TGG + chr2_4:19434631-19434650 None:intergenic 40.0%
CCTCAACAAGGTTCTTCAAT+TGG + chr2_4:19434690-19434709 None:intergenic 40.0%
CCAATTGAAGAACCTTGTTG+AGG - chr2_4:19434687-19434706 Msa0319610:CDS 40.0%
AGAACCTTGTTGAGGAATTG+AGG - chr2_4:19434695-19434714 Msa0319610:CDS 40.0%
TTGTCCTCAATTCCTCAACA+AGG + chr2_4:19434702-19434721 None:intergenic 40.0%
TGGAGATGCTTACCACATTA+TGG - chr2_4:19434747-19434766 Msa0319610:intron 40.0%
ATAACATTGGCAGCATCACT+AGG + chr2_4:19435216-19435235 None:intergenic 40.0%
GGTGATTCTTTGCTCGATGT+AGG - chr2_4:19432386-19432405 Msa0319610:CDS 45.0%
!!! CCCACAGGTCGTTTTTGTAA+TGG - chr2_4:19432476-19432495 Msa0319610:intron 45.0%
!! TACAAGTGTCGGTGTCATGT+CGG - chr2_4:19432669-19432688 Msa0319610:intron 45.0%
ACACGACACATGTCCAACAT+CGG - chr2_4:19432698-19432717 Msa0319610:intron 45.0%
GCATTAGGAGACAAGTAAGG+AGG + chr2_4:19432849-19432868 None:intergenic 45.0%
AATTATGCTTCTGCTGCAGC+TGG - chr2_4:19432897-19432916 Msa0319610:CDS 45.0%
CAACATCAAACGATGGGACA+TGG - chr2_4:19433336-19433355 Msa0319610:CDS 45.0%
!!! ACTTTATTTTGTGCGGGGGA+GGG + chr2_4:19433369-19433388 None:intergenic 45.0%
TCCCCCGCACAAAATAAAGT+CGG - chr2_4:19433369-19433388 Msa0319610:CDS 45.0%
!!! TGCCGACTTTATTTTGTGCG+GGG + chr2_4:19433374-19433393 None:intergenic 45.0%
! GTGCCCAAAATTGAGGTGTT+GGG + chr2_4:19433437-19433456 None:intergenic 45.0%
TGTGCCCAAAATTGAGGTGT+TGG + chr2_4:19433438-19433457 None:intergenic 45.0%
TGTGTGTGTGCCCAAAATTG+AGG + chr2_4:19433444-19433463 None:intergenic 45.0%
GGAGACAATAATTGCCACTC+TGG + chr2_4:19434344-19434363 None:intergenic 45.0%
TTGCAGCGGTTATTCACTCT+AGG - chr2_4:19434538-19434557 Msa0319610:intron 45.0%
GAGCTAGGTGATTAGGGAAT+TGG + chr2_4:19434654-19434673 None:intergenic 45.0%
TCTGCATGTTGTCACCTAGT+TGG - chr2_4:19435105-19435124 Msa0319610:CDS 45.0%
TGTCACCTAGTTGGTCGATT+TGG - chr2_4:19435114-19435133 Msa0319610:CDS 45.0%
!!! ATAATAATTAATTTTTTTGT+TGG + chr2_4:19433232-19433251 None:intergenic 5.0%
CACGACACATGTCCAACATC+GGG - chr2_4:19432699-19432718 Msa0319610:intron 50.0%
GATTATGCGTGTCCCGATGT+TGG + chr2_4:19432714-19432733 None:intergenic 50.0%
ATCGGGACACGCATAATCTG+AGG - chr2_4:19432716-19432735 Msa0319610:intron 50.0%
!!! CTTTATTTTGTGCGGGGGAG+GGG + chr2_4:19433368-19433387 None:intergenic 50.0%
!!! GACTTTATTTTGTGCGGGGG+AGG + chr2_4:19433370-19433389 None:intergenic 50.0%
!!! GCCGACTTTATTTTGTGCGG+GGG + chr2_4:19433373-19433392 None:intergenic 50.0%
!! CACCTAGTTGGTCGATTTGG+AGG - chr2_4:19435117-19435136 Msa0319610:CDS 50.0%
AGCCTCCAAATCGACCAACT+AGG + chr2_4:19435122-19435141 None:intergenic 50.0%
GCACAGATACGGACACGACA+CGG - chr2_4:19432589-19432608 Msa0319610:intron 55.0%
!! TGTCGGTGTCATGTCGGTGT+CGG - chr2_4:19432675-19432694 Msa0319610:intron 55.0%
!! CACTCTGGAATTGAGGGACC+AGG + chr2_4:19434329-19434348 None:intergenic 55.0%
CTGGTCCCTCAATTCCAGAG+TGG - chr2_4:19434327-19434346 Msa0319610:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 19432225 19435348 19432225 ID=Msa0319610;Name=Msa0319610
chr2_4 mRNA 19432225 19435348 19432225 ID=Msa0319610-mRNA-1;Parent=Msa0319610;Name=Msa0319610-mRNA-1;_AED=0.22;_eAED=0.22;_QI=44|1|1|1|1|1|5|37|368
chr2_4 exon 19432225 19432485 19432225 ID=Msa0319610-mRNA-1:exon:7183;Parent=Msa0319610-mRNA-1
chr2_4 exon 19432774 19433029 19432774 ID=Msa0319610-mRNA-1:exon:7182;Parent=Msa0319610-mRNA-1
chr2_4 exon 19433161 19433406 19433161 ID=Msa0319610-mRNA-1:exon:7181;Parent=Msa0319610-mRNA-1
chr2_4 exon 19434626 19434753 19434626 ID=Msa0319610-mRNA-1:exon:7180;Parent=Msa0319610-mRNA-1
chr2_4 exon 19435052 19435348 19435052 ID=Msa0319610-mRNA-1:exon:7179;Parent=Msa0319610-mRNA-1
chr2_4 five_prime_UTR 19435305 19435348 19435305 ID=Msa0319610-mRNA-1:five_prime_utr;Parent=Msa0319610-mRNA-1
chr2_4 CDS 19435052 19435304 19435052 ID=Msa0319610-mRNA-1:cds;Parent=Msa0319610-mRNA-1
chr2_4 CDS 19434626 19434753 19434626 ID=Msa0319610-mRNA-1:cds;Parent=Msa0319610-mRNA-1
chr2_4 CDS 19433161 19433406 19433161 ID=Msa0319610-mRNA-1:cds;Parent=Msa0319610-mRNA-1
chr2_4 CDS 19432774 19433029 19432774 ID=Msa0319610-mRNA-1:cds;Parent=Msa0319610-mRNA-1
chr2_4 CDS 19432262 19432485 19432262 ID=Msa0319610-mRNA-1:cds;Parent=Msa0319610-mRNA-1
chr2_4 three_prime_UTR 19432225 19432261 19432225 ID=Msa0319610-mRNA-1:three_prime_utr;Parent=Msa0319610-mRNA-1
Gene Sequence

>Msa0319610

ATGGGTCTTTATAATTTGAGCATAAAACTCATTTTTGAGAATATGTTTAGGATTTTAACGTTATTGCTCTCTTTCAAATTTAGCTTATCAAATAAAATCCAAGCTTCATTTGTTTTTGGTGATTCTTTGCTCGATGTAGGAAATAACAATTACATCACTTCACTTGCCAAAGCAAATCATCACCCTTTTGGAATTGATTTTGGAAAACCCACAGGTCGTTTTTGTAATGGAAGAACCGTTGTTGATGTTATAGAGCAACAACTGGGTCTTGATTATACTCCTCCTTACTTGTCTCCTAATGCTTATGGATCGGTGATTCTAAAGGGTGTCAATTATGCTTCTGCTGCAGCTGGAATTCTCAATTACACTGGTCACATTTTTGTTGGTCGAATCAACTTTGATGCACAAATTGATAACTTTGCAAATACAAGAGAAGATATCATTAGCAAAATTGGTGTTCGTGCAGCTCTCAAATTGCTTAAGAATTCTCTCTTCACAGTAGCATTTGGCTCAAACGATTTTCTTGATAACTATTTGGCACCTGGTCCCTCAATTCCAGAGTGGCAATTATTGTCTCCAGAATCATTTGTGACCATCATGATATCAACATTCAGAGTACAAATAACCCGGTTATTCACTCTAGGAGCCAGAAAAATTGTTGTGGTAAATGTTGGTCCTATTGGGTGTATACCATGTATGAGAGATTTAAACCCATTTTCTGGAGACAAGTGTGTCCAATTCCCTAATCACCTAGCTCAATTATTTAACACCCAATTGAAGAACCTTGTTGAGGAATTGAGGACAAATTTGAAGGGTTCATTATTTGTTTATGGAGATGCTTACCACATTATGGAAGATATCATGATGAATTACAGTAAATATGGTTTCAAGAATACAAATTCTGCATGTTGTCACCTAGTTGGTCGATTTGGAGGCTTAATTCCATGTGATCGTTATTCAAAAGTTTGTGAAGATCGATCCAAGTATATTTATTGGGATACTTTTCATCCTAGTGATGCTGCCAATGTTATCATTGCAGAACGTTTATTAAATGGTGATGCTAATGATGTTTCACCTACAAATGTTTGGCAACTCTTGAAAGCTTGA
Protein sequence

>Msa0319610

MGLYNLSIKLIFENMFRILTLLLSFKFSLSNKIQASFVFGDSLLDVGNNNYITSLAKANHHPFGIDFGKPTGRFCNGRTVVDVIEQQLGLDYTPPYLSPNAYGSVILKGVNYASAAAGILNYTGHIFVGRINFDAQIDNFANTREDIISKIGVRAALKLLKNSLFTVAFGSNDFLDNYLAPGPSIPEWQLLSPESFVTIMISTFRVQITRLFTLGARKIVVVNVGPIGCIPCMRDLNPFSGDKCVQFPNHLAQLFNTQLKNLVEELRTNLKGSLFVYGDAYHIMEDIMMNYSKYGFKNTNSACCHLVGRFGGLIPCDRYSKVCEDRSKYIYWDTFHPSDAANVIIAERLLNGDANDVSPTNVWQLLKA*