Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237030 | XP_003593967.2 | 94.924 | 197 | 10 | 0 | 1 | 197 | 1 | 197 | 3.99e-133 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237030 | sp|Q75LJ4|ACBP6_ORYSJ | 36.000 | 125 | 78 | 1 | 74 | 196 | 168 | 292 | 5.06e-21 | 93.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237030 | G7IQ00 | 94.924 | 197 | 10 | 0 | 1 | 197 | 1 | 197 | 1.90e-133 | 399 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0237030 | Msa0274680 | 0.843912 | 1.046449e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237030 | MtrunA17_Chr2g0286241 | 94.924 | 197 | 10 | 0 | 1 | 197 | 1 | 197 | 3.67e-137 | 399 |
| Msa0237030 | MtrunA17_Chr4g0066851 | 70.335 | 209 | 46 | 4 | 1 | 197 | 1 | 205 | 2.56e-88 | 274 |
| Msa0237030 | MtrunA17_Chr1g0197401 | 32.558 | 129 | 84 | 1 | 72 | 197 | 11 | 139 | 9.95e-20 | 86.7 |
| Msa0237030 | MtrunA17_Chr7g0272641 | 30.159 | 126 | 85 | 1 | 71 | 196 | 169 | 291 | 3.76e-16 | 76.3 |
| Msa0237030 | MtrunA17_Chr4g0061581 | 32.432 | 111 | 66 | 2 | 76 | 185 | 171 | 273 | 7.80e-13 | 66.6 |
| Msa0237030 | MtrunA17_Chr1g0192821 | 34.188 | 117 | 68 | 3 | 81 | 197 | 174 | 281 | 1.04e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237030 | AT5G18590.2 | 63.776 | 196 | 61 | 1 | 1 | 196 | 1 | 186 | 1.26e-82 | 259 |
| Msa0237030 | AT5G18590.1 | 63.776 | 196 | 61 | 1 | 1 | 196 | 1 | 186 | 1.26e-82 | 259 |
| Msa0237030 | AT3G05420.2 | 34.074 | 135 | 86 | 2 | 64 | 196 | 161 | 294 | 8.50e-19 | 84.3 |
| Msa0237030 | AT3G05420.1 | 34.074 | 135 | 86 | 2 | 64 | 196 | 160 | 293 | 8.66e-19 | 84.3 |
| Msa0237030 | AT5G04420.2 | 31.579 | 133 | 82 | 1 | 72 | 195 | 18 | 150 | 8.54e-17 | 78.6 |
| Msa0237030 | AT5G04420.1 | 31.579 | 133 | 82 | 1 | 72 | 195 | 18 | 150 | 8.54e-17 | 78.6 |
| Msa0237030 | AT5G04420.3 | 31.579 | 133 | 82 | 1 | 72 | 195 | 18 | 150 | 8.54e-17 | 78.6 |
| Msa0237030 | AT5G27630.3 | 31.452 | 124 | 83 | 1 | 75 | 196 | 171 | 294 | 1.95e-16 | 77.4 |
| Msa0237030 | AT5G27630.1 | 31.452 | 124 | 83 | 1 | 75 | 196 | 171 | 294 | 2.04e-16 | 77.4 |
| Msa0237030 | AT5G27630.4 | 31.452 | 124 | 83 | 1 | 75 | 196 | 171 | 294 | 2.07e-16 | 77.4 |
| Msa0237030 | AT5G27630.2 | 31.452 | 124 | 83 | 1 | 75 | 196 | 171 | 294 | 2.21e-16 | 77.4 |
Find 58 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAGTTTGCATTTCGTTTA+GGG | 0.271535 | 2_2:+10099753 | None:intergenic |
| GTAGAGTTTGCATTTCGTTT+AGG | 0.274524 | 2_2:+10099752 | None:intergenic |
| TAATTTGACACCAGGTTTCT+TGG | 0.311604 | 2_2:-10097884 | Msa0237030:intron |
| TCAACACACTTCTCTCTATT+CGG | 0.321522 | 2_2:-10100318 | Msa0237030:five_prime_UTR |
| AATTTGACACCAGGTTTCTT+GGG | 0.325115 | 2_2:-10097883 | Msa0237030:intron |
| CCGAGAAAGTTGATGATGTT+TGG | 0.337331 | 2_2:+10100246 | None:intergenic |
| AGAAGAAGAATAAAGATGTT+TGG | 0.345399 | 2_2:-10099978 | Msa0237030:exon |
| TTTCGTTTAGGGTGCCTAAT+AGG | 0.354777 | 2_2:+10099764 | None:intergenic |
| ATAGTGGTTGGTGGTGAATC+TGG | 0.354968 | 2_2:-10099081 | Msa0237030:CDS |
| CAGGTCCAGTAGAAGAAAAT+TGG | 0.371719 | 2_2:+10099595 | None:intergenic |
| CCAAACATCATCAACTTTCT+CGG | 0.374653 | 2_2:-10100246 | Msa0237030:intron |
| TTGATGATGTTTGGTTAGTA+AGG | 0.377798 | 2_2:+10100255 | None:intergenic |
| AGCTTGCAAGGGTCATAGTT+TGG | 0.382174 | 2_2:-10098812 | Msa0237030:intron |
| CCAGGAATCGACAAAATATC+TGG | 0.383294 | 2_2:-10097825 | Msa0237030:intron |
| ATATCAACTTTCTACAAAAC+AGG | 0.393195 | 2_2:+10097628 | None:intergenic |
| ATCTGTAACGGCAGGCTACT+TGG | 0.402706 | 2_2:+10098838 | None:intergenic |
| CATCAGGTAGTTCAGAGAAT+TGG | 0.408902 | 2_2:-10099557 | Msa0237030:CDS |
| TGGATGGTGTTGTCAATTGC+AGG | 0.433137 | 2_2:-10099537 | Msa0237030:CDS |
| AAGGAACTAGAAGTCCTATT+AGG | 0.436143 | 2_2:-10099778 | Msa0237030:CDS |
| GAGATAAGTAACTGTGCATC+AGG | 0.444693 | 2_2:-10099573 | Msa0237030:CDS |
| TTGGTTAGTAAGGAAGTTGT+TGG | 0.462031 | 2_2:+10100265 | None:intergenic |
| TAATTACATACATAGGATCT+AGG | 0.468547 | 2_2:+10099501 | None:intergenic |
| GTTACAGATTCCAGCTTGCA+AGG | 0.482796 | 2_2:-10098824 | Msa0237030:CDS |
| TGGTTAGTAAGGAAGTTGTT+GGG | 0.499953 | 2_2:+10100266 | None:intergenic |
| GACCGAGTGCTGGTCACTCA+TGG | 0.511048 | 2_2:-10097695 | Msa0237030:CDS |
| AAACTATGACCCTTGCAAGC+TGG | 0.516811 | 2_2:+10098814 | None:intergenic |
| GTTGGTGGTGAATCTGGAAA+TGG | 0.520081 | 2_2:-10099075 | Msa0237030:CDS |
| TCTCGTAAACACAAGAAACT+TGG | 0.524489 | 2_2:-10099951 | Msa0237030:CDS |
| TTCCATGAGTGACCAGCACT+CGG | 0.537533 | 2_2:+10097693 | None:intergenic |
| GATGCACAGTTACTTATCTC+AGG | 0.542667 | 2_2:+10099576 | None:intergenic |
| GGAAGCAAAGGGAGACGTAC+CGG | 0.546908 | 2_2:-10097674 | Msa0237030:CDS |
| CTGGTCACTCATGGAAGCAA+AGG | 0.547648 | 2_2:-10097686 | Msa0237030:CDS |
| TTTAGGATGATGGGGTTGAA+GGG | 0.550340 | 2_2:-10099647 | Msa0237030:intron |
| ATTTGACACCAGGTTTCTTG+GGG | 0.558080 | 2_2:-10097882 | Msa0237030:intron |
| TGGATTGTTAGACGATGTGC+AGG | 0.584889 | 2_2:-10099055 | Msa0237030:intron |
| GTAAACACAAGAAACTTGGC+AGG | 0.590232 | 2_2:-10099947 | Msa0237030:intron |
| CATACATAGGATCTAGGAGT+AGG | 0.590371 | 2_2:+10099507 | None:intergenic |
| GATGGGGTTGAAGGGTCAAG+TGG | 0.591764 | 2_2:-10099639 | Msa0237030:CDS |
| TGGTCACTCATGGAAGCAAA+GGG | 0.594851 | 2_2:-10097685 | Msa0237030:CDS |
| AAGCTGGAATCTGTAACGGC+AGG | 0.596939 | 2_2:+10098830 | None:intergenic |
| AGGACTTCTAGTTCCTTGTG+TGG | 0.600271 | 2_2:+10099784 | None:intergenic |
| CAACTTTCTGATACCACACA+AGG | 0.603801 | 2_2:-10099797 | Msa0237030:CDS |
| CATCTTATTCTCAATGACAC+AGG | 0.607094 | 2_2:+10099104 | None:intergenic |
| TTACAGATTCCAGCTTGCAA+GGG | 0.607096 | 2_2:-10098823 | Msa0237030:CDS |
| TTGCAAGCTGGAATCTGTAA+CGG | 0.609492 | 2_2:+10098826 | None:intergenic |
| CATTGAGAATAAGATGATAG+TGG | 0.617742 | 2_2:-10099097 | Msa0237030:CDS |
| TTGACACAGAGACCGAGTGC+TGG | 0.619406 | 2_2:-10097705 | Msa0237030:CDS |
| GAGAATAAGATGATAGTGGT+TGG | 0.633657 | 2_2:-10099093 | Msa0237030:CDS |
| AATAAGATGATAGTGGTTGG+TGG | 0.636096 | 2_2:-10099090 | Msa0237030:CDS |
| AGGGTCAAGTGGTCATTCTG+AGG | 0.636554 | 2_2:-10099628 | Msa0237030:CDS |
| GGATGGTGTTGTCAATTGCA+GGG | 0.638261 | 2_2:-10099536 | Msa0237030:CDS |
| AAAAGGCACTCCTCATTGGA+GGG | 0.642366 | 2_2:-10097857 | Msa0237030:CDS |
| ATTGGAGGGAAAACAGACCC+AGG | 0.645160 | 2_2:-10097843 | Msa0237030:CDS |
| TTTGACACCAGGTTTCTTGG+GGG | 0.653476 | 2_2:-10097881 | Msa0237030:intron |
| AGGTAGTTCAGAGAATTGGA+TGG | 0.659831 | 2_2:-10099553 | Msa0237030:CDS |
| GCAAAGGGAGACGTACCGGT+AGG | 0.670726 | 2_2:-10097670 | Msa0237030:CDS |
| GATGGTGTTGTCAATTGCAG+GGG | 0.689441 | 2_2:-10099535 | Msa0237030:CDS |
| GTATAGCTTAGATGACACAG+TGG | 0.805097 | 2_2:+10098867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATATTGACTAATTATT+TGG | - | chr2_2:10099006-10099025 | Msa0237030:intron | 10.0% |
| !!! | ATTTTTCTATACTTAAAAAT+CGG | - | chr2_2:10099847-10099866 | Msa0237030:intron | 10.0% |
| !!! | TAAATTTTGACAAATTTTCA+TGG | - | chr2_2:10099076-10099095 | Msa0237030:CDS | 15.0% |
| !!! | AATTTTATCTTCGAATTTTA+AGG | + | chr2_2:10099777-10099796 | None:intergenic | 15.0% |
| !!! | ATTTTTTGCTTTTTTTAGTA+TGG | - | chr2_2:10100235-10100254 | Msa0237030:intron | 15.0% |
| !!! | TTTTTTGCTTTTTTTAGTAT+GGG | - | chr2_2:10100236-10100255 | Msa0237030:intron | 15.0% |
| !! | AAAATGAATACTACTAAACT+TGG | + | chr2_2:10097824-10097843 | None:intergenic | 20.0% |
| !!! | TTTAGTAGTATTCATTTTCT+GGG | - | chr2_2:10097826-10097845 | Msa0237030:CDS | 20.0% |
| !!! | AGTACAATTCTTTTTCTTTT+TGG | - | chr2_2:10098052-10098071 | Msa0237030:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+TGG | - | chr2_2:10098748-10098767 | Msa0237030:intron | 20.0% |
| !! | TTTCAAAATGACCTTAATAA+TGG | - | chr2_2:10099236-10099255 | Msa0237030:intron | 20.0% |
| !! | TGCTCTTAAAATATACTTAT+TGG | + | chr2_2:10099408-10099427 | None:intergenic | 20.0% |
| !! | TAAGAGATTTACAAGAAAAA+AGG | - | chr2_2:10099811-10099830 | Msa0237030:CDS | 20.0% |
| !!! | TTTAAGTGCATATCTTTTAA+TGG | - | chr2_2:10099995-10100014 | Msa0237030:five_prime_UTR | 20.0% |
| !! | GTTTAGTAGTATTCATTTTC+TGG | - | chr2_2:10097825-10097844 | Msa0237030:intron | 25.0% |
| !! | CAAAGATTGTAACTTTTCAT+TGG | + | chr2_2:10097852-10097871 | None:intergenic | 25.0% |
| ! | AGAAGAAGAATAAAGATGTT+TGG | - | chr2_2:10097989-10098008 | Msa0237030:intron | 25.0% |
| !! | TGTGGTTATTACTAAGTTTT+TGG | - | chr2_2:10098292-10098311 | Msa0237030:intron | 25.0% |
| ! | TAATTACATACATAGGATCT+AGG | + | chr2_2:10098469-10098488 | None:intergenic | 25.0% |
| ! | AGATCCTATGTATGTAATTA+TGG | - | chr2_2:10098469-10098488 | Msa0237030:intron | 25.0% |
| ! | GATCCTATGTATGTAATTAT+GGG | - | chr2_2:10098470-10098489 | Msa0237030:intron | 25.0% |
| ! | ATTCCCATAATTACATACAT+AGG | + | chr2_2:10098476-10098495 | None:intergenic | 25.0% |
| ! | TTGACTAATTATTTGGTTGT+TGG | - | chr2_2:10099013-10099032 | Msa0237030:intron | 25.0% |
| ! | CAACATACTATTCATTTCAT+TGG | - | chr2_2:10099046-10099065 | Msa0237030:intron | 25.0% |
| ! | AGTTATGAATGAAATTCGAT+TGG | + | chr2_2:10099373-10099392 | None:intergenic | 25.0% |
| ! | TTTATTTGATATGGAGAGAA+AGG | - | chr2_2:10099487-10099506 | Msa0237030:intron | 25.0% |
| ! | ATTATATGAAGTGCATACAA+AGG | + | chr2_2:10099650-10099669 | None:intergenic | 25.0% |
| !!! | ATTATTTCTCCTCTTTTTTC+TGG | + | chr2_2:10099720-10099739 | None:intergenic | 25.0% |
| ! | CAAGAAAAAAGGAAAAGAAA+AGG | - | chr2_2:10099822-10099841 | Msa0237030:intron | 25.0% |
| ! | GTAAGTATAACAACATAGAA+GGG | + | chr2_2:10099971-10099990 | None:intergenic | 25.0% |
| ! | AAAAGATATGCACTTAAATC+AGG | + | chr2_2:10099993-10100012 | None:intergenic | 25.0% |
| ! | CTTTATAATAATTTGACACC+AGG | - | chr2_2:10100075-10100094 | Msa0237030:intron | 25.0% |
| ! | ATTACATTTGCAAATGACAT+GGG | + | chr2_2:10100174-10100193 | None:intergenic | 25.0% |
| ! | TATTACATTTGCAAATGACA+TGG | + | chr2_2:10100175-10100194 | None:intergenic | 25.0% |
| AAAAAACACGGCAATAGAAA+CGG | + | chr2_2:10097677-10097696 | None:intergenic | 30.0% | |
| TTGTTGGGAAACAAAAAACA+CGG | + | chr2_2:10097689-10097708 | None:intergenic | 30.0% | |
| !! | TTGATGATGTTTGGTTAGTA+AGG | + | chr2_2:10097715-10097734 | None:intergenic | 30.0% |
| AACATTCTTAGTTAGTGACA+AGG | + | chr2_2:10097754-10097773 | None:intergenic | 30.0% | |
| AACAAAGTCAACACTGAAAA+TGG | + | chr2_2:10097797-10097816 | None:intergenic | 30.0% | |
| GAAAACAAAACCACACAAAA+GGG | + | chr2_2:10097900-10097919 | None:intergenic | 30.0% | |
| TGAAAACAAAACCACACAAA+AGG | + | chr2_2:10097901-10097920 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGTAGAGTGAAGA+AGG | - | chr2_2:10098145-10098164 | Msa0237030:intron | 30.0% |
| TAGAGTTTGCATTTCGTTTA+GGG | + | chr2_2:10098217-10098236 | None:intergenic | 30.0% | |
| !!! | CTAAGTTTTTGGCTTCTTTT+AGG | - | chr2_2:10098303-10098322 | Msa0237030:intron | 30.0% |
| TTTCTATAAGCTCTTCTGAA+CGG | + | chr2_2:10098577-10098596 | None:intergenic | 30.0% | |
| ACTACTGATCTGTTATTCAT+TGG | - | chr2_2:10098828-10098847 | Msa0237030:CDS | 30.0% | |
| CATTGAGAATAAGATGATAG+TGG | - | chr2_2:10098870-10098889 | Msa0237030:CDS | 30.0% | |
| ATACTATTCATTTCATTGGC+AGG | - | chr2_2:10099050-10099069 | Msa0237030:intron | 30.0% | |
| ATTAGTAAGCATCTCATTTG+TGG | + | chr2_2:10099346-10099365 | None:intergenic | 30.0% | |
| TTTCATTCATAACTGACGAT+AGG | - | chr2_2:10099379-10099398 | Msa0237030:intron | 30.0% | |
| TGTTATATGATTCTCTGTGT+TGG | - | chr2_2:10099455-10099474 | Msa0237030:intron | 30.0% | |
| AAACCATATATGAGAACAAC+AGG | + | chr2_2:10099561-10099580 | None:intergenic | 30.0% | |
| ! | CACTTCATATAATTGATGAC+TGG | - | chr2_2:10099657-10099676 | Msa0237030:intron | 30.0% |
| !!! | TTGCAAATTTTAACTGCATC+TGG | + | chr2_2:10099881-10099900 | None:intergenic | 30.0% |
| TTGCAAATACAAACCTATCT+CGG | - | chr2_2:10099895-10099914 | Msa0237030:intron | 30.0% | |
| GGTAAGTATAACAACATAGA+AGG | + | chr2_2:10099972-10099991 | None:intergenic | 30.0% | |
| AAGCATAAGAGAATTGAGAT+AGG | + | chr2_2:10100058-10100077 | None:intergenic | 30.0% | |
| TTACATTTGCAAATGACATG+GGG | + | chr2_2:10100173-10100192 | None:intergenic | 30.0% | |
| ! | TGCATTTTCAATATTCCTAC+CGG | + | chr2_2:10100315-10100334 | None:intergenic | 30.0% |
| TCAACACACTTCTCTCTATT+CGG | - | chr2_2:10097649-10097668 | Msa0237030:CDS | 35.0% | |
| TGGTTAGTAAGGAAGTTGTT+GGG | + | chr2_2:10097704-10097723 | None:intergenic | 35.0% | |
| TTGGTTAGTAAGGAAGTTGT+TGG | + | chr2_2:10097705-10097724 | None:intergenic | 35.0% | |
| CCAAACATCATCAACTTTCT+CGG | - | chr2_2:10097721-10097740 | Msa0237030:intron | 35.0% | |
| TCTCGTAAACACAAGAAACT+TGG | - | chr2_2:10098016-10098035 | Msa0237030:intron | 35.0% | |
| AAGGAACTAGAAGTCCTATT+AGG | - | chr2_2:10098189-10098208 | Msa0237030:intron | 35.0% | |
| GTAGAGTTTGCATTTCGTTT+AGG | + | chr2_2:10098218-10098237 | None:intergenic | 35.0% | |
| TTCAGCTTCATTCTTTGTGT+TGG | - | chr2_2:10098248-10098267 | Msa0237030:intron | 35.0% | |
| TCAGCTTCATTCTTTGTGTT+GGG | - | chr2_2:10098249-10098268 | Msa0237030:intron | 35.0% | |
| !!! | CTTTGTGTTGGGTTGAATTT+TGG | - | chr2_2:10098260-10098279 | Msa0237030:intron | 35.0% |
| !!! | TTTGGCTTCTTTTAGGATGA+TGG | - | chr2_2:10098310-10098329 | Msa0237030:intron | 35.0% |
| !!! | TTGGCTTCTTTTAGGATGAT+GGG | - | chr2_2:10098311-10098330 | Msa0237030:intron | 35.0% |
| ! | GATTGCCAATTTTCTTCTAC+TGG | - | chr2_2:10098367-10098386 | Msa0237030:intron | 35.0% |
| ! | GAAGTTTTCATAAGCTATCC+TGG | + | chr2_2:10098626-10098645 | None:intergenic | 35.0% |
| CATCTTATTCTCAATGACAC+AGG | + | chr2_2:10098866-10098885 | None:intergenic | 35.0% | |
| !! | GAGAATAAGATGATAGTGGT+TGG | - | chr2_2:10098874-10098893 | Msa0237030:CDS | 35.0% |
| !! | AATAAGATGATAGTGGTTGG+TGG | - | chr2_2:10098877-10098896 | Msa0237030:CDS | 35.0% |
| !!! | TGAGGGAACATTTCTAGTTT+TGG | - | chr2_2:10098939-10098958 | Msa0237030:intron | 35.0% |
| ! | AGAGCATCATGCCATTATTA+AGG | + | chr2_2:10099250-10099269 | None:intergenic | 35.0% |
| AATCCACCCTTAGTAAATTG+AGG | - | chr2_2:10099317-10099336 | Msa0237030:intron | 35.0% | |
| GAATCATATAACACCGTATG+AGG | + | chr2_2:10099448-10099467 | None:intergenic | 35.0% | |
| AGGATGTTCTACAGGAATTT+AGG | - | chr2_2:10099507-10099526 | Msa0237030:intron | 35.0% | |
| TGTCCTGTTGTTCTCATATA+TGG | - | chr2_2:10099555-10099574 | Msa0237030:CDS | 35.0% | |
| ! | ACTGGCATAACGATGATTTT+TGG | - | chr2_2:10099675-10099694 | Msa0237030:intron | 35.0% |
| !!! | CTCTTTTTTCTGGTTAACTC+GGG | + | chr2_2:10099710-10099729 | None:intergenic | 35.0% |
| !!! | CCTCTTTTTTCTGGTTAACT+CGG | + | chr2_2:10099711-10099730 | None:intergenic | 35.0% |
| TAATTTGACACCAGGTTTCT+TGG | - | chr2_2:10100083-10100102 | Msa0237030:intron | 35.0% | |
| AATTTGACACCAGGTTTCTT+GGG | - | chr2_2:10100084-10100103 | Msa0237030:intron | 35.0% | |
| !!! | CAGATATTTTGTCGATTCCT+GGG | + | chr2_2:10100144-10100163 | None:intergenic | 35.0% |
| CTTTGTCATGATTCATGTTG+TGG | - | chr2_2:10100196-10100215 | Msa0237030:intron | 35.0% | |
| !! | CCGAGAAAGTTGATGATGTT+TGG | + | chr2_2:10097724-10097743 | None:intergenic | 40.0% |
| ! | TAACTAGCTACCCTTTTGTG+TGG | - | chr2_2:10097887-10097906 | Msa0237030:intron | 40.0% |
| GTAAACACAAGAAACTTGGC+AGG | - | chr2_2:10098020-10098039 | Msa0237030:intron | 40.0% | |
| CAACTTTCTGATACCACACA+AGG | - | chr2_2:10098170-10098189 | Msa0237030:intron | 40.0% | |
| ! | TTTCGTTTAGGGTGCCTAAT+AGG | + | chr2_2:10098206-10098225 | None:intergenic | 40.0% |
| !!! | GAATTTTGGAACAGTGAGTG+TGG | - | chr2_2:10098274-10098293 | Msa0237030:intron | 40.0% |
| !!! | TGGCTTCTTTTAGGATGATG+GGG | - | chr2_2:10098312-10098331 | Msa0237030:intron | 40.0% |
| !!! | TTTTAGGATGATGGGGTTGA+AGG | - | chr2_2:10098319-10098338 | Msa0237030:intron | 40.0% |
| !! | TTTAGGATGATGGGGTTGAA+GGG | - | chr2_2:10098320-10098339 | Msa0237030:intron | 40.0% |
| CAGGTCCAGTAGAAGAAAAT+TGG | + | chr2_2:10098375-10098394 | None:intergenic | 40.0% | |
| GATGCACAGTTACTTATCTC+AGG | + | chr2_2:10098394-10098413 | None:intergenic | 40.0% | |
| GAGATAAGTAACTGTGCATC+AGG | - | chr2_2:10098394-10098413 | Msa0237030:intron | 40.0% | |
| CATCAGGTAGTTCAGAGAAT+TGG | - | chr2_2:10098410-10098429 | Msa0237030:intron | 40.0% | |
| AGGTAGTTCAGAGAATTGGA+TGG | - | chr2_2:10098414-10098433 | Msa0237030:intron | 40.0% | |
| CATACATAGGATCTAGGAGT+AGG | + | chr2_2:10098463-10098482 | None:intergenic | 40.0% | |
| GACATATCTATAAGCTCTCC+AGG | - | chr2_2:10098605-10098624 | Msa0237030:intron | 40.0% | |
| CGTATGACGAAGACCATATT+TGG | + | chr2_2:10098764-10098783 | None:intergenic | 40.0% | |
| GTATAGCTTAGATGACACAG+TGG | + | chr2_2:10099103-10099122 | None:intergenic | 40.0% | |
| TTGCAAGCTGGAATCTGTAA+CGG | + | chr2_2:10099144-10099163 | None:intergenic | 40.0% | |
| TTACAGATTCCAGCTTGCAA+GGG | - | chr2_2:10099144-10099163 | Msa0237030:intron | 40.0% | |
| TGATGCTCTCATCATAGACA+TGG | - | chr2_2:10099261-10099280 | Msa0237030:intron | 40.0% | |
| TGGCAGCCTCAATTTACTAA+GGG | + | chr2_2:10099326-10099345 | None:intergenic | 40.0% | |
| TGTCATGTTGATGCCTCATA+CGG | - | chr2_2:10099432-10099451 | Msa0237030:intron | 40.0% | |
| CCGAGTTAACCAGAAAAAAG+AGG | - | chr2_2:10099708-10099727 | Msa0237030:intron | 40.0% | |
| CAAATACAAACCTATCTCGG+AGG | - | chr2_2:10099898-10099917 | Msa0237030:intron | 40.0% | |
| AAACCTATCTCGGAGGAAAA+TGG | - | chr2_2:10099905-10099924 | Msa0237030:intron | 40.0% | |
| GGAGGAAAATGGAGAGTTTA+GGG | - | chr2_2:10099916-10099935 | Msa0237030:intron | 40.0% | |
| ATTTGACACCAGGTTTCTTG+GGG | - | chr2_2:10100085-10100104 | Msa0237030:intron | 40.0% | |
| !!! | CCAGATATTTTGTCGATTCC+TGG | + | chr2_2:10100145-10100164 | None:intergenic | 40.0% |
| CCAGGAATCGACAAAATATC+TGG | - | chr2_2:10100142-10100161 | Msa0237030:intron | 40.0% | |
| !! | AGGACTTCTAGTTCCTTGTG+TGG | + | chr2_2:10098186-10098205 | None:intergenic | 45.0% |
| !! | TGGATGGTGTTGTCAATTGC+AGG | - | chr2_2:10098430-10098449 | Msa0237030:intron | 45.0% |
| !! | GGATGGTGTTGTCAATTGCA+GGG | - | chr2_2:10098431-10098450 | Msa0237030:intron | 45.0% |
| !! | GATGGTGTTGTCAATTGCAG+GGG | - | chr2_2:10098432-10098451 | Msa0237030:intron | 45.0% |
| !! | ATAGTGGTTGGTGGTGAATC+TGG | - | chr2_2:10098886-10098905 | Msa0237030:CDS | 45.0% |
| !! | GTTGGTGGTGAATCTGGAAA+TGG | - | chr2_2:10098892-10098911 | Msa0237030:CDS | 45.0% |
| TGGATTGTTAGACGATGTGC+AGG | - | chr2_2:10098912-10098931 | Msa0237030:intron | 45.0% | |
| GTTACAGATTCCAGCTTGCA+AGG | - | chr2_2:10099143-10099162 | Msa0237030:intron | 45.0% | |
| AAACTATGACCCTTGCAAGC+TGG | + | chr2_2:10099156-10099175 | None:intergenic | 45.0% | |
| AGCTTGCAAGGGTCATAGTT+TGG | - | chr2_2:10099155-10099174 | Msa0237030:intron | 45.0% | |
| CAGCCTCAATTTACTAAGGG+TGG | + | chr2_2:10099323-10099342 | None:intergenic | 45.0% | |
| GTGGCAGCCTCAATTTACTA+AGG | + | chr2_2:10099327-10099346 | None:intergenic | 45.0% | |
| GGAGAGAAAGGATGTTCTAC+AGG | - | chr2_2:10099499-10099518 | Msa0237030:intron | 45.0% | |
| ! | TCTCCATTTTCCTCCGAGAT+AGG | + | chr2_2:10099911-10099930 | None:intergenic | 45.0% |
| CGGAGGAAAATGGAGAGTTT+AGG | - | chr2_2:10099915-10099934 | Msa0237030:intron | 45.0% | |
| TTTGACACCAGGTTTCTTGG+GGG | - | chr2_2:10100086-10100105 | Msa0237030:intron | 45.0% | |
| !! | AAAAAGGCACTCCTCATTGG+AGG | - | chr2_2:10100109-10100128 | Msa0237030:intron | 45.0% |
| !! | AAAAGGCACTCCTCATTGGA+GGG | - | chr2_2:10100110-10100129 | Msa0237030:intron | 45.0% |
| TGGTCACTCATGGAAGCAAA+GGG | - | chr2_2:10100282-10100301 | Msa0237030:five_prime_UTR | 45.0% | |
| !! | AAAATATAATTTATTTGATA+TGG | - | chr2_2:10099478-10099497 | Msa0237030:intron | 5.0% |
| !!! | TAATTTTTTTTTTTTTCTTT+TGG | - | chr2_2:10099623-10099642 | Msa0237030:CDS | 5.0% |
| AGGGTCAAGTGGTCATTCTG+AGG | - | chr2_2:10098339-10098358 | Msa0237030:intron | 50.0% | |
| ATCTGTAACGGCAGGCTACT+TGG | + | chr2_2:10099132-10099151 | None:intergenic | 50.0% | |
| AAGCTGGAATCTGTAACGGC+AGG | + | chr2_2:10099140-10099159 | None:intergenic | 50.0% | |
| ! | CCTTTTTCCCCCAAGAAACC+TGG | + | chr2_2:10100096-10100115 | None:intergenic | 50.0% |
| CCAGGTTTCTTGGGGGAAAA+AGG | - | chr2_2:10100093-10100112 | Msa0237030:intron | 50.0% | |
| !! | GGGAAAAAGGCACTCCTCAT+TGG | - | chr2_2:10100106-10100125 | Msa0237030:intron | 50.0% |
| ! | GGTCTGTTTTCCCTCCAATG+AGG | + | chr2_2:10100123-10100142 | None:intergenic | 50.0% |
| ATTGGAGGGAAAACAGACCC+AGG | - | chr2_2:10100124-10100143 | Msa0237030:intron | 50.0% | |
| TTCCATGAGTGACCAGCACT+CGG | + | chr2_2:10100277-10100296 | None:intergenic | 50.0% | |
| CTGGTCACTCATGGAAGCAA+AGG | - | chr2_2:10100281-10100300 | Msa0237030:five_prime_UTR | 50.0% | |
| GATGGGGTTGAAGGGTCAAG+TGG | - | chr2_2:10098328-10098347 | Msa0237030:intron | 55.0% | |
| AGACGATGTGCAGGTGAGTG+AGG | - | chr2_2:10098921-10098940 | Msa0237030:intron | 55.0% | |
| GACGATGTGCAGGTGAGTGA+GGG | - | chr2_2:10098922-10098941 | Msa0237030:intron | 55.0% | |
| TTGACACAGAGACCGAGTGC+TGG | - | chr2_2:10100262-10100281 | Msa0237030:five_prime_UTR | 55.0% | |
| GGAAGCAAAGGGAGACGTAC+CGG | - | chr2_2:10100293-10100312 | Msa0237030:five_prime_UTR | 55.0% | |
| !! | GACCGAGTGCTGGTCACTCA+TGG | - | chr2_2:10100272-10100291 | Msa0237030:five_prime_UTR | 60.0% |
| ! | GCAAAGGGAGACGTACCGGT+AGG | - | chr2_2:10100297-10100316 | Msa0237030:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 10097639 | 10100350 | 10097639 | ID=Msa0237030;Name=Msa0237030 |
| chr2_2 | mRNA | 10097639 | 10100350 | 10097639 | ID=Msa0237030-mRNA-1;Parent=Msa0237030;Name=Msa0237030-mRNA-1;_AED=0.12;_eAED=0.12;_QI=153|0.71|0.62|0.75|0.85|0.75|8|0|206 |
| chr2_2 | exon | 10097639 | 10097736 | 10097639 | ID=Msa0237030-mRNA-1:exon:4371;Parent=Msa0237030-mRNA-1 |
| chr2_2 | exon | 10097826 | 10097892 | 10097826 | ID=Msa0237030-mRNA-1:exon:4370;Parent=Msa0237030-mRNA-1 |
| chr2_2 | exon | 10098813 | 10098917 | 10098813 | ID=Msa0237030-mRNA-1:exon:4369;Parent=Msa0237030-mRNA-1 |
| chr2_2 | exon | 10099056 | 10099133 | 10099056 | ID=Msa0237030-mRNA-1:exon:4368;Parent=Msa0237030-mRNA-1 |
| chr2_2 | exon | 10099512 | 10099664 | 10099512 | ID=Msa0237030-mRNA-1:exon:4367;Parent=Msa0237030-mRNA-1 |
| chr2_2 | exon | 10099751 | 10099832 | 10099751 | ID=Msa0237030-mRNA-1:exon:4366;Parent=Msa0237030-mRNA-1 |
| chr2_2 | exon | 10099948 | 10100034 | 10099948 | ID=Msa0237030-mRNA-1:exon:4365;Parent=Msa0237030-mRNA-1 |
| chr2_2 | exon | 10100247 | 10100350 | 10100247 | ID=Msa0237030-mRNA-1:exon:4364;Parent=Msa0237030-mRNA-1 |
| chr2_2 | five_prime_UTR | 10100247 | 10100350 | 10100247 | ID=Msa0237030-mRNA-1:five_prime_utr;Parent=Msa0237030-mRNA-1 |
| chr2_2 | five_prime_UTR | 10099986 | 10100034 | 10099986 | ID=Msa0237030-mRNA-1:five_prime_utr;Parent=Msa0237030-mRNA-1 |
| chr2_2 | CDS | 10099948 | 10099985 | 10099948 | ID=Msa0237030-mRNA-1:cds;Parent=Msa0237030-mRNA-1 |
| chr2_2 | CDS | 10099751 | 10099832 | 10099751 | ID=Msa0237030-mRNA-1:cds;Parent=Msa0237030-mRNA-1 |
| chr2_2 | CDS | 10099512 | 10099664 | 10099512 | ID=Msa0237030-mRNA-1:cds;Parent=Msa0237030-mRNA-1 |
| chr2_2 | CDS | 10099056 | 10099133 | 10099056 | ID=Msa0237030-mRNA-1:cds;Parent=Msa0237030-mRNA-1 |
| chr2_2 | CDS | 10098813 | 10098917 | 10098813 | ID=Msa0237030-mRNA-1:cds;Parent=Msa0237030-mRNA-1 |
| chr2_2 | CDS | 10097826 | 10097892 | 10097826 | ID=Msa0237030-mRNA-1:cds;Parent=Msa0237030-mRNA-1 |
| chr2_2 | CDS | 10097639 | 10097736 | 10097639 | ID=Msa0237030-mRNA-1:cds;Parent=Msa0237030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
