AlfalfaGEDB | Msa0241170

M. sativa cultivar zhongmu-4 / Msa0241170

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241170	XP_003594540.2	98.687	1066	14	0	1	1066	1	1066	0.0	2117

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241170	sp\|C0LGQ9\|GHR1_ARATH	70.280	1070	297	11	1	1066	1	1053	0.0	1443

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241170	A0A072V606	98.687	1066	14	0	1	1066	1	1066	0.0	2117

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0198500	Msa0241170	0.979898	5.458818e-149	-8.615850e-47
Msa0241170	Msa0278780	0.962289	1.060957e-120	-8.615850e-47
Msa0241170	Msa0318710	0.894980	1.478990e-75	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241170	MtrunA17_Chr2g0292521	98.687	1066	14	0	1	1066	1	1066	0.0	2117
Msa0241170	MtrunA17_Chr5g0440581	41.706	1067	506	21	24	1066	18	992	0.0	746
Msa0241170	MtrunA17_Chr3g0129081	38.327	1088	547	17	24	1066	22	1030	0.0	657
Msa0241170	MtrunA17_Chr5g0437741	33.429	700	366	18	389	1066	145	766	9.66e-87	297
Msa0241170	MtrunA17_Chr5g0437741	32.063	315	181	10	26	337	75	359	2.14e-28	123
Msa0241170	MtrunA17_Chr3g0129391	28.571	1029	559	32	92	1054	216	1134	1.51e-82	292
Msa0241170	MtrunA17_Chr3g0129391	32.192	438	270	14	145	569	152	575	2.12e-32	136
Msa0241170	MtrunA17_Chr3g0129391	29.598	348	217	9	55	380	398	739	1.36e-22	105
Msa0241170	MtrunA17_Chr3g0129391	35.088	171	104	5	431	600	151	315	3.88e-13	74.3
Msa0241170	MtrunA17_Chr1g0189871	27.778	1152	590	41	40	1065	43	1078	2.70e-78	279

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241170	AT4G20940.1	70.817	1052	288	10	19	1066	1	1037	0.0	1434
Msa0241170	AT5G10020.1	40.259	1083	543	20	26	1066	26	1046	0.0	717
Msa0241170	AT2G27060.1	39.457	1105	527	16	3	1066	10	1013	0.0	660
Msa0241170	AT2G27060.3	41.580	962	478	13	146	1066	2	920	0.0	627
Msa0241170	AT2G27060.3	30.453	243	138	6	96	337	220	432	4.13e-16	84.3
Msa0241170	AT5G10020.2	40.655	947	496	20	166	1066	72	998	0.0	614
Msa0241170	AT5G10020.2	38.095	189	101	5	93	266	337	524	3.47e-18	90.9
Msa0241170	AT2G27060.2	36.613	874	414	15	3	836	10	783	9.49e-136	430
Msa0241170	AT1G55610.1	27.145	1212	624	43	6	1054	6	1121	1.11e-82	293
Msa0241170	AT1G55610.2	27.145	1212	624	43	6	1054	6	1121	1.11e-82	293

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Find 265 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAGGTGTTACCTCA+GGG	0.646258	2_2:-16623607	None:intergenic
AAACGGTCCACCATTAACAT+GGG	0.674217	2_2:+16625580	Msa0241170:CDS
AAAGATTATTGGAAATATCA+AGG	0.495838	2_2:-16622603	None:intergenic
AAATGTAACTTAGCATTCCC+AGG	0.553430	2_2:-16624148	None:intergenic
AACATAGAATATCTTGATCT+CGG	0.454662	2_2:+16623560	Msa0241170:CDS
AACGGTTATTTGATATATCA+AGG	0.397861	2_2:-16624006	None:intergenic
AACTGGTTGAGGGCGACCGC+GGG	0.554709	2_2:-16624371	None:intergenic
AACTTCCAGTCAGCAGTGGC+AGG	0.478102	2_2:-16623472	None:intergenic
AAGAGTTTGTTAAAGAGATA+AGG	0.396744	2_2:+16624806	Msa0241170:CDS
AAGGGAATGAAGGAGGTCCT+AGG	0.542980	2_2:+16626049	Msa0241170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAACAAAGCTATAACAAGA+AGG	+	chr2_2:16622119-16622138	Msa0241170:five_prime_UTR	30.0%
AATTCAGAACATAACCAGTA+GGG	-	chr2_2:16622354-16622373	None:intergenic	30.0%
TGATATGGAATTGTTGGATA+TGG	-	chr2_2:16622539-16622558	None:intergenic	30.0%
ATATCCAACAATTCCATATC+AGG	+	chr2_2:16622538-16622557	Msa0241170:CDS	30.0%
TTGAAATCGGCAATGTTATT+AGG	-	chr2_2:16622571-16622590	None:intergenic	30.0%
TGGAAATATCAAGGAATTCA+AGG	-	chr2_2:16622597-16622616	None:intergenic	30.0%
TCCTAACTCTATTTCAGAAA+TGG	+	chr2_2:16622711-16622730	Msa0241170:CDS	30.0%
AATGGCTTCCATTAAATCTT+TGG	+	chr2_2:16622729-16622748	Msa0241170:CDS	30.0%
GCTCAAATCCAAAGATTTAA+TGG	-	chr2_2:16622740-16622759	None:intergenic	30.0%
GAAATAAGTTCGAAACCTTT+GGG	-	chr2_2:16622859-16622878	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	16621507	16626401	16621507	ID=Msa0241170;Name=Msa0241170
chr2_2	mRNA	16621507	16626401	16621507	ID=Msa0241170-mRNA-1;Parent=Msa0241170;Name=Msa0241170-mRNA-1;_AED=0.02;_eAED=0.02;_QI=341\|1\|1\|1\|0.66\|0.5\|4\|251\|1066
chr2_2	exon	16621507	16621613	16621507	ID=Msa0241170-mRNA-1:exon:6830;Parent=Msa0241170-mRNA-1
chr2_2	exon	16621998	16623294	16621998	ID=Msa0241170-mRNA-1:exon:6831;Parent=Msa0241170-mRNA-1
chr2_2	exon	16623402	16624955	16623402	ID=Msa0241170-mRNA-1:exon:6832;Parent=Msa0241170-mRNA-1
chr2_2	exon	16625567	16626401	16625567	ID=Msa0241170-mRNA-1:exon:6833;Parent=Msa0241170-mRNA-1
chr2_2	five_prime_UTR	16621507	16621613	16621507	ID=Msa0241170-mRNA-1:five_prime_utr;Parent=Msa0241170-mRNA-1
chr2_2	five_prime_UTR	16621998	16622231	16621998	ID=Msa0241170-mRNA-1:five_prime_utr;Parent=Msa0241170-mRNA-1
chr2_2	CDS	16622232	16623294	16622232	ID=Msa0241170-mRNA-1:cds;Parent=Msa0241170-mRNA-1
chr2_2	CDS	16623402	16624955	16623402	ID=Msa0241170-mRNA-1:cds;Parent=Msa0241170-mRNA-1
chr2_2	CDS	16625567	16626150	16625567	ID=Msa0241170-mRNA-1:cds;Parent=Msa0241170-mRNA-1
chr2_2	three_prime_UTR	16626151	16626401	16626151	ID=Msa0241170-mRNA-1:three_prime_utr;Parent=Msa0241170-mRNA-1

Gene Sequence

>Msa0241170

ATGAATCTCTTTAGTCTTTTAGTATTATCTTTATCTTTCTTTAGTATTACCATTATGGGGCAGCTTCCTTCACAGGACATTTTAGCATTGTTGGAATTTAAAAAATGCATTAAGCATGACCCTACTGGTTATGTTCTGAATTCATGGAATGAGGAATCTATTGACTTTGATGGATGTCCATCTTCATGGAATGGTGTTCTTTGTAATGGCGGTAATGTTGCCGGTGTTGTCCTTGATAACTTAGGTCTCTCTGCTGATTCTGATTTGAGTGTTTTTTCAAATCTCTCAAAGCTTGTGAAACTTTCCATATCCAACAATTCCATATCAGGAAAACTACCTAATAACATTGCCGATTTCAAAAGCCTTGAATTCCTTGATATTTCCAATAATCTTTTTTCCTCGTCCATACCGGTTGCAATCGGTAAATTTGGTAGCTTGCAGAATCTGTCATTGGCTGGTAATAACTTTTCCGGTCCAATTCCTAACTCTATTTCAGAAATGGCTTCCATTAAATCTTTGGATTTGAGCCGCAATGCCCTTTCTGGAGCTCTGCCATCGTCGCTGACTAAGCTGAATAGTCTTGTATCGCTTAACTTGTCTTACAATCGCTTAACCGGAAAAATTCCCAAAGGTTTCGAACTTATTTCCAGCCTTGACAAACTCGACTTGCATGGGAATATGTTTGATGGTCCTTTAGACGTTGAGTTTATGCTTTTATCTAGTGCTAGCTATGTTGATTTAAGTGATAACATGCTACTGAGTTCTAGTTCTGGGAAATTTCTACCGGGAATATCTGAAAGTATTAAGTATCTGAATCTAAGCCACAACCAGCTTACTGGCATATTGGTTGGTGGGGCTGAACAACCTGTTTTCCAGGACTTGAAGGTGTTGGATCTCAGCTATAACCAATTGAATGGAGAATTACCTGGATTTGACTTTGTTTATGATCTCCAAATCCTTAAGCTTAGCAACAACAGATTTTCAGGATTTATACCTAATGGCTTGCTTAAAGGCGATTCTTTGGTTTTAACTGAACTCGATCTGAGTGCCAACAATCTCTCAGGGCCATTGAGTATGATTACATCAACAACACTTCACTTTCTGAATCTCTCGTCGAACGGTTTCACTGGTGACCTGCCACTGCTGACTGGAAGTTGCGCCATACTTGATCTGTCAAATAACAAATTTGAAGGAAATTTAACCAGGATGCTGAAATGGGGGAACATAGAATATCTTGATCTCGGGCGGAATCGTTTGGCAGGGAATGTCCCTGAGGTAACACCTCAGTTTTTGCGATTGAATTATTTGAATCTATCCAATAATCGTCTCAGCGATGACCTTCCAAAAGTTTTAGCACAGTATCCAAAGCTTAGAGTGCTTGATATCAGTTCCAACCAATTAAAAGGTGTTCTTCTAACCGATTTTTTCACAATGCCAACATTACAAGAGCTCCATCTTGAAAATAATTTGATCAATGGTGGCATCAATTTATCGTCTTCTCTTGACCAATCTCATCTTCAAGTTCTTGATCTGTCTCACAACCAACTTAGTAGCTTTTTTCCTGATGAGTTTGGATCATTAACTAGCCTGAGAGTTCTGAACATTGCTGGAAATAACTTTGCTGGTTCTCTTCCAACCACTATTGCTGACATGAGTTCTTTAAACTCCCTTGATATATCAAATAACCGTTTTACAGGTCCACTTCCAAATAACATGCCAAAGGGACTCAAAGACTTCAATGCTTCTGAAAATGATCTATCTGGAGTTGTCCCAGAAATTCTTAGGAATTTCCCTAGTTCTTCTTTCTTTCCTGGGAATGCTAAGTTACATTTTCCGAATAGTCCTCCTGGATCAACAGTTTCACCTACCAAAAGTTCCAAGGGGAAGTCTATGTCCACAGCTGTTAAAGTAATAATCATAGTTTCATGTGTGGTTGCTCTTTTCATATTAATCTTACTGGCGGTCTTCATACATTACATACGTATGTCGCGATCTTCTACATCAGAATATGATACAGCTACAGGTAAGGATACCCGCGGTCGCCCTCAACCAGTTATCTCTGGACCAATTCGTCCAACAGAGAGAGGGGGTCCTTTGGTTGTATCAGCTGAGGATCTCGTGTCTTCACGTAAAGGATCACCATCGGAAATAATTAGCCCTGATGCAAAAACTGCAGCTGTAGCTGGATTCTCTCCATCAAAACACAGCCAGTTTTCATGGTCACCTGAATCTGGTGATTCATTGACTGCTGAAAATCTTACAAGACTAGATACGAGATCGCCAGACAGGTTGATTGGAGAGCTGCATTTTCTTGATGATACAATATCACTGACACCTGAGGAGCTATCCAGGGCACCAGCTGAAGTTTTGGGCAGAAGTAGTCACGGTACTTCTTACAAGGCAACTTTGGATAACGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTGGCGAAACAAAGGAAAGAGTTTGTTAAAGAGATAAGGAAGTTTGCAAACATCAGGCATCCAAATGTTGTCGGTTTGAAAGGTTATTATTGGGGTCCTACGCAGCACGAAAAGCTTATTCTTTCAGATTACATTTCACCGGGAAGTCTTGCAAGTTTTCTTTATGATCGACCGGGAAGAAACGGTCCACCATTAACATGGGCACAGAGGCTCAAAATAGCAGTTGACGTAGCACGTGGCCTGAACTATCTCCATTTTGACAGAGCTGTTCCTCATGGGAACCTTAAAGCTACGAATGTGTTGTTAGATACAGCTGATATGAATGCACGTGTCGCTGATTATTGTCTTCACCGACTTATGACTCAAGCTGGTACTATTGAGCAGATTCTTGATGCTGGTGTCTTAGGTTATCGCGCGCCAGAGTTAGCTGCTTCCAAGAAGCCAATGCCTTCTTTCAAGTCAGATGTCTATGCTTTTGGCGTGATACTTTTGGAACTTTTAACCGGAAGGTGTGCTGGTGATGTGATAACTGGTGAGGAGGGAGGTGTTGATCTTACAGATTGGCTAAGATTGCGAGTAGCAGAAGGTCGAGGCTCGGAATGTTTTGATGCAACTTTGATGTCAGAAATGGGAAATCCAGTTGTAGAAAAGGGAATGAAGGAGGTCCTAGGAATAGCGATTCGATGTATTCGATCAGTTTCTGAGAGGCCTGGTATCAAGACTATATATGAAGATCTTTCTTCTATATAG

Protein sequence

>Msa0241170

MNLFSLLVLSLSFFSITIMGQLPSQDILALLEFKKCIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADSDLSVFSNLSKLVKLSISNNSISGKLPNNIADFKSLEFLDISNNLFSSSIPVAIGKFGSLQNLSLAGNNFSGPIPNSISEMASIKSLDLSRNALSGALPSSLTKLNSLVSLNLSYNRLTGKIPKGFELISSLDKLDLHGNMFDGPLDVEFMLLSSASYVDLSDNMLLSSSSGKFLPGISESIKYLNLSHNQLTGILVGGAEQPVFQDLKVLDLSYNQLNGELPGFDFVYDLQILKLSNNRFSGFIPNGLLKGDSLVLTELDLSANNLSGPLSMITSTTLHFLNLSSNGFTGDLPLLTGSCAILDLSNNKFEGNLTRMLKWGNIEYLDLGRNRLAGNVPEVTPQFLRLNYLNLSNNRLSDDLPKVLAQYPKLRVLDISSNQLKGVLLTDFFTMPTLQELHLENNLINGGINLSSSLDQSHLQVLDLSHNQLSSFFPDEFGSLTSLRVLNIAGNNFAGSLPTTIADMSSLNSLDISNNRFTGPLPNNMPKGLKDFNASENDLSGVVPEILRNFPSSSFFPGNAKLHFPNSPPGSTVSPTKSSKGKSMSTAVKVIIIVSCVVALFILILLAVFIHYIRMSRSSTSEYDTATGKDTRGRPQPVISGPIRPTERGGPLVVSAEDLVSSRKGSPSEIISPDAKTAAVAGFSPSKHSQFSWSPESGDSLTAENLTRLDTRSPDRLIGELHFLDDTISLTPEELSRAPAEVLGRSSHGTSYKATLDNGLLLRVKWLREGVAKQRKEFVKEIRKFANIRHPNVVGLKGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRNGPPLTWAQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTADMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVITGEEGGVDLTDWLRLRVAEGRGSECFDATLMSEMGNPVVEKGMKEVLGIAIRCIRSVSERPGIKTIYEDLSSI*