AlfalfaGEDB | Msa0318710

M. sativa cultivar zhongmu-4 / Msa0318710

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0318710	XP_003594540.2	98.499	1066	16	0	1	1066	1	1066	0.0	2110

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0318710	sp\|C0LGQ9\|GHR1_ARATH	70.187	1070	298	11	1	1066	1	1053	0.0	1439

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0198500	Msa0318710	0.905245	5.263444e-80	-8.615850e-47
Msa0241170	Msa0318710	0.894980	1.478990e-75	-8.615850e-47
Msa0278780	Msa0318710	0.853769	1.918911e-61	-8.615850e-47
Msa0318710	Msa0749740	0.815502	8.945615e-52	-8.615850e-47
Msa0318710	Msa0749770	0.800934	1.141667e-48	-8.615850e-47
Msa0318710	Msa0750090	0.814069	1.858783e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0318710	MtrunA17_Chr2g0292521	98.499	1066	16	0	1	1066	1	1066	0.0	2110
Msa0318710	MtrunA17_Chr5g0440581	41.363	1071	504	19	24	1066	18	992	0.0	742
Msa0318710	MtrunA17_Chr3g0129081	38.511	1088	545	17	24	1066	22	1030	0.0	664
Msa0318710	MtrunA17_Chr5g0437741	33.286	700	367	18	389	1066	145	766	4.97e-86	295
Msa0318710	MtrunA17_Chr5g0437741	31.746	315	182	10	26	337	75	359	4.60e-27	119
Msa0318710	MtrunA17_Chr3g0129391	28.669	1029	558	32	92	1054	216	1134	4.45e-83	294
Msa0318710	MtrunA17_Chr3g0129391	32.192	438	270	14	145	569	152	575	2.03e-32	136
Msa0318710	MtrunA17_Chr3g0129391	29.310	348	218	9	55	380	398	739	2.39e-21	100
Msa0318710	MtrunA17_Chr3g0129391	35.088	171	104	5	431	600	151	315	4.05e-13	74.3
Msa0318710	MtrunA17_Chr5g0440191	28.440	1083	617	49	48	1059	51	1046	4.59e-71	258

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0318710	AT4G20940.1	70.722	1052	289	10	19	1066	1	1037	0.0	1431
Msa0318710	AT5G10020.1	40.665	1082	540	21	26	1066	26	1046	0.0	724
Msa0318710	AT2G27060.1	39.367	1105	528	17	3	1066	10	1013	0.0	656
Msa0318710	AT2G27060.3	41.580	962	478	14	146	1066	2	920	0.0	626
Msa0318710	AT2G27060.3	31.557	244	134	8	96	337	220	432	3.04e-16	84.7
Msa0318710	AT2G27060.3	36.585	123	75	1	93	212	286	408	2.06e-11	68.9
Msa0318710	AT5G10020.2	41.015	946	494	21	166	1066	72	998	0.0	617
Msa0318710	AT5G10020.2	37.037	189	103	5	93	266	337	524	1.32e-16	85.9
Msa0318710	AT2G27060.2	36.728	874	413	17	3	836	10	783	2.38e-134	426
Msa0318710	AT1G25320.1	30.758	699	369	25	412	1066	72	699	6.80e-66	236

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Find 249 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAGGTGTTACCTCA+GGG	0.646258	2_4:-17839572	None:intergenic
AAACGGTCCACCATTAACAT+GGG	0.674217	2_4:+17841543	Msa0318710:CDS
AAAGATTATTGGAAATATCA+AGG	0.495838	2_4:-17838568	None:intergenic
AAATGTAACTTAGCATTCCC+AGG	0.553430	2_4:-17840113	None:intergenic
AACATAGAATATCTTGATCT+CGG	0.454662	2_4:+17839525	Msa0318710:CDS
AACGGTTATTTGATATATCA+AGG	0.397861	2_4:-17839971	None:intergenic
AACTGGTTGAGGGCGACCGC+GGG	0.554709	2_4:-17840336	None:intergenic
AACTTCCAGTCAGCAGTGGC+AGG	0.478102	2_4:-17839437	None:intergenic
AAGAGTTTGTTAAAGAGATA+AGG	0.396744	2_4:+17840771	Msa0318710:CDS
AAGGGAATGAAGGAGGTCTT+AGG	0.357484	2_4:+17842012	Msa0318710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCAGAACATAACCAGTA+GGG	-	chr2_4:17838319-17838338	None:intergenic	30.0%
TTGAAATCGGCAATGTTATT+AGG	-	chr2_4:17838536-17838555	None:intergenic	30.0%
TGGAAATATCAAGGAATTCA+AGG	-	chr2_4:17838562-17838581	None:intergenic	30.0%
TCCTAACTCTATTTCAGAAA+TGG	+	chr2_4:17838676-17838695	Msa0318710:CDS	30.0%
AATGGCTTCCATTAAATCTT+TGG	+	chr2_4:17838694-17838713	Msa0318710:CDS	30.0%
GCTCAAATCCAAAGATTTAA+TGG	-	chr2_4:17838705-17838724	None:intergenic	30.0%
GAAATAAGTTCGAAACCTTT+GGG	-	chr2_4:17838824-17838843	None:intergenic	30.0%
TCATAAACAAAGTCAAATCC+AGG	-	chr2_4:17839124-17839143	None:intergenic	30.0%
GTTGATGTAATCATACTCAA+TGG	-	chr2_4:17839372-17839391	None:intergenic	30.0%
GTTATTTGACAGATCAAGTA+TGG	-	chr2_4:17839466-17839485	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	17837897	17842363	17837897	ID=Msa0318710;Name=Msa0318710
chr2_4	mRNA	17837897	17842363	17837897	ID=Msa0318710-mRNA-1;Parent=Msa0318710;Name=Msa0318710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=300\|1\|1\|1\|1\|1\|3\|250\|1066
chr2_4	exon	17837897	17839259	17837897	ID=Msa0318710-mRNA-1:exon:6603;Parent=Msa0318710-mRNA-1
chr2_4	exon	17839367	17840920	17839367	ID=Msa0318710-mRNA-1:exon:6604;Parent=Msa0318710-mRNA-1
chr2_4	exon	17841530	17842363	17841530	ID=Msa0318710-mRNA-1:exon:6605;Parent=Msa0318710-mRNA-1
chr2_4	five_prime_UTR	17837897	17838196	17837897	ID=Msa0318710-mRNA-1:five_prime_utr;Parent=Msa0318710-mRNA-1
chr2_4	CDS	17838197	17839259	17838197	ID=Msa0318710-mRNA-1:cds;Parent=Msa0318710-mRNA-1
chr2_4	CDS	17839367	17840920	17839367	ID=Msa0318710-mRNA-1:cds;Parent=Msa0318710-mRNA-1
chr2_4	CDS	17841530	17842113	17841530	ID=Msa0318710-mRNA-1:cds;Parent=Msa0318710-mRNA-1
chr2_4	three_prime_UTR	17842114	17842363	17842114	ID=Msa0318710-mRNA-1:three_prime_utr;Parent=Msa0318710-mRNA-1

Gene Sequence

>Msa0318710

ATGAATCTCTTTAGTCTTTTAGTATTATCTTTATCTTTCTTTAGTATTACCATTATGGGGCAGCTTCCTTCACAGGACATTTTAGCATTGTTGGAATTTAAGAAATGCATTAAGCATGACCCTACTGGTTATGTTCTGAATTCATGGAATGAGGAATCTATTGACTTTGATGGATGTCCATCTTCATGGAATGGTGTTCTTTGTAATGGCGGTAATGTTGCCGGTGTTGTCCTTGATAACTTAGGTCTCTCTGCTGATTCTGATTTGAGTGTTTTTTCAAATCTCTCAAAGCTTGTGAAACTTTCCATGTCCAACAATTCCATATCAGGAAAACTACCTAATAACATTGCCGATTTCAAAAGCCTTGAATTCCTTGATATTTCCAATAATCTTTTTTCCTCGTCCATACTGGTTACAATCGGTAAATTTGGTAGCTTGCAGAATCTGTCATTGGCTGGTAATAACTTTTCCGGTCCAATTCCTAACTCTATTTCAGAAATGGCTTCCATTAAATCTTTGGATTTGAGCCGCAATGCCCTTTCTGGAGCTCTGCCATCGTCGCTGACTAAGCTGAATAGTCTTGTATCGCTTAACTTGTCTTACAATCGCTTAACCGGAAAAATTCCCAAAGGTTTCGAACTTATTTCCAGCCTTGACAAACTCGACTTGCATGGGAATATGTTTGATGGTCCTTTAGACGTTGAGTTTATGCTTTTATCTAGTGCTAGCTATGTTGATTTAAGTGATAACATGCTACTGAGTTCTAGTTCTGGGAAATTTCTACCGGGAATATCTGAAAGTATTAAGTATCTGAATCTAAGCCACAACCAGCTTACTGGCATATTGGTTGGTGGGGCTGAACAACCTGTTTTCCAGGACTTGAAGGTGTTGGATCTCAGCTATAACCAATTGAATGGAGAATTACCTGGATTTGACTTTGTTTATGATCTCCAAATCCTTAAGCTTAGCAACAACAGATTTTCAGGATTTATACCTAATGGCTTGCTTAAAGGCGATTCTTTGGTTTTAACTGAACTCGATCTGAGTGCCAACAATCTCTCAGGGCCATTGAGTATGATTACATCAACAACACTTCACTTTCTGAATCTCTCGTCGAACGGTTTCACTGGTGACCTGCCACTGCTGACTGGAAGTTGCGCCATACTTGATCTGTCAAATAACAAATTTGAAGGAAATTTAACCAGGATGCTGAAATGGGGGAACATAGAATATCTTGATCTCGGGCGGAATCGTTTGGCAGGGAATGTCCCTGAGGTAACACCTCAGTTTTTGCGATTGAATTATTTGAATCTATCCAATAATCGTCTCAGCGATGACCTTCCAAAAGTTTTAGCACAGTATCCAAAGCTTAGAGTGCTTGATATCAGTTCCAACCAATTAAAAGGTGTTCTTCTAACCGATTTTTTCACAATGCCAACATTACAAGAGCTCCATCTTGAAAATAATTTGATCAATGGTGGCATCAATTTATCGTCTTCTCTTGACCAATCTCATCTTCAAGTTCTTGATCTGTCTCACAACCAACTTAGTAGCTTTTTTCCTGATGAGTTTGGATCATTAACTAGCCTGAGAGTTCTGAACATTGCTGGAAATAACTTTGCTGGTTCTCTTCCAACCACTATTGCTGACATGAGTTCTTTAAACTCCCTTGATATATCAAATAACCGTTTTACAGGTCCACTTCCAAATAACATGCCAAAGGGACTCAAAGACTTCAATGCTTCTGAAAATGATCTATCTGGAGTTGTCCCAGAAATTCTTAGGAATTTCCCTAGTTCTTCTTTCTTTCCTGGGAATGCTAAGTTACATTTTCCGAATAGTCCTCCTGGATCAACAGTTTCACCTACCAAAAGTTCCAAGGGGAAGTCTATGTCCACAGCTGTTAAAGTAATAATCATAGTTTCATGTGTGGTTGCTCTTTTCATATTAATCTTACTGGCTGTCTTCATACATTACATACGTATGTCGCGATCTTCTACATCAGAATATGATACAGCTACAGGTAAGGATACCCGCGGTCGCCCTCAACCAGTTATCTCTGGACTAATTCGTCCAACAGAGAGAGGGGGTCCTTTGGTTGTATCAGCTGAGGATCTCGTGTCTTCACGTAAAGGATCGCCATCGGAAATAATTAGCCCTGATGCAAAAACTGCAGCTGTAGCTGGATTCTCTCCATCAAAACACAGCCAGTTTTCATGGTCACCTGAATCTGGTGATTCATTGACTGCTGAAAATCTTACAAGACTAGATACGAGATCGCCAGACAGGTTGATTGGAGAGCTGCATTTTCTTGATGATACAATATCACTGACACCTGAGGAGCTATCCAGGGCACCAGCTGAAGTTTTGGGCAGAAGTAGTCACGGTACTTCTTACAAGGCAACTTTGGATAACGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTGGCGAAACAAAGGAAAGAGTTTGTTAAAGAGATAAGGAAGTTTGCAAACATCAGGCATCCAAATGTTGTCGGTTTGAAAGGTTATTATTGGGGTCCTACGCAGCACGAAAAGCTTATTCTTTCAGATTACATTTCACCGGGAAGTCTTGCAAGTTTTCTTTATGATCGACCGGGAAGAAACGGTCCACCATTAACATGGGCACAGAGGCTCAAAATAGCAGTTGACGTAGCACGTGGCCTGAACTATCTCCATTTTGACAGAGCTGTTCCTCATGGGAACCTTAAAGCTACGAATGTGTTGTTAGATACAGCTGATATGAATGCACGTGTCGCTGATTATTGTCTTCACCGACTTATGACTCAAGCTGGTACTATTGAGCAGATTCTTGATGCTGGTGTCTTAGGTTATCGCGCGCCAGAGTTAGCTGCTTCCAAGAAGCCAATGCCTTCTTTCAAGTCAGATGTCTATGCTTTTGGCGTGATACTTTTGGAACTTTTAACCGGAAGGTGTGCTGGTGATGTGATAACTGGTGAGGAGGGAGGTGTTGATCTTACAGATTGGCTAAGATTGCGAGTAGCTGAAGGTCGAGGCTCGGATTGTTTTGATGCAACTTTGATGTCAGAAATGGGAAATCCAGTTGTAGAAAAGGGAATGAAGGAGGTCTTAGGAATAGCAATTCGATGTATTCGATCAGTTTCTGAAAGGCCTGGCATCAAGACTATATATGAAGATCTTTCTTCTATATAG

Protein sequence

>Msa0318710

MNLFSLLVLSLSFFSITIMGQLPSQDILALLEFKKCIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADSDLSVFSNLSKLVKLSMSNNSISGKLPNNIADFKSLEFLDISNNLFSSSILVTIGKFGSLQNLSLAGNNFSGPIPNSISEMASIKSLDLSRNALSGALPSSLTKLNSLVSLNLSYNRLTGKIPKGFELISSLDKLDLHGNMFDGPLDVEFMLLSSASYVDLSDNMLLSSSSGKFLPGISESIKYLNLSHNQLTGILVGGAEQPVFQDLKVLDLSYNQLNGELPGFDFVYDLQILKLSNNRFSGFIPNGLLKGDSLVLTELDLSANNLSGPLSMITSTTLHFLNLSSNGFTGDLPLLTGSCAILDLSNNKFEGNLTRMLKWGNIEYLDLGRNRLAGNVPEVTPQFLRLNYLNLSNNRLSDDLPKVLAQYPKLRVLDISSNQLKGVLLTDFFTMPTLQELHLENNLINGGINLSSSLDQSHLQVLDLSHNQLSSFFPDEFGSLTSLRVLNIAGNNFAGSLPTTIADMSSLNSLDISNNRFTGPLPNNMPKGLKDFNASENDLSGVVPEILRNFPSSSFFPGNAKLHFPNSPPGSTVSPTKSSKGKSMSTAVKVIIIVSCVVALFILILLAVFIHYIRMSRSSTSEYDTATGKDTRGRPQPVISGLIRPTERGGPLVVSAEDLVSSRKGSPSEIISPDAKTAAVAGFSPSKHSQFSWSPESGDSLTAENLTRLDTRSPDRLIGELHFLDDTISLTPEELSRAPAEVLGRSSHGTSYKATLDNGLLLRVKWLREGVAKQRKEFVKEIRKFANIRHPNVVGLKGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRNGPPLTWAQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTADMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVITGEEGGVDLTDWLRLRVAEGRGSDCFDATLMSEMGNPVVEKGMKEVLGIAIRCIRSVSERPGIKTIYEDLSSI*