AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0242600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242600 MtrunA17_Chr2g0294841 98.686 761 10 0 1 761 1 761 0.0 1585
Msa0242600 MtrunA17_Chr2g0276841 58.434 664 256 5 22 675 42 695 0.0 816
Msa0242600 MtrunA17_Chr1g0198761 41.888 752 408 10 2 745 3 733 0.0 590
Msa0242600 MtrunA17_Chr2g0290391 39.939 651 370 4 21 661 27 666 5.59e-167 498
Msa0242600 MtrunA17_Chr5g0431001 49.537 432 210 3 44 470 60 488 1.26e-145 436
Msa0242600 MtrunA17_Chr5g0448761 28.281 640 437 12 42 666 57 689 1.33e-79 271
Msa0242600 MtrunA17_Chr1g0202341 27.303 597 408 11 14 603 27 604 5.38e-67 234
Msa0242600 MtrunA17_Chr2g0329031 28.076 577 367 13 51 611 20 564 9.63e-66 232
Msa0242600 MtrunA17_Chr3g0080351 27.888 606 380 13 14 603 54 618 5.94e-65 232
Msa0242600 MtrunA17_Chr3g0082121 28.571 581 389 11 38 613 36 595 2.11e-62 222
Msa0242600 MtrunA17_Chr8g0363841 25.645 659 416 13 46 662 18 644 7.69e-61 217
Msa0242600 MtrunA17_Chr1g0207551 27.428 587 404 10 24 603 13 584 1.56e-59 216
Msa0242600 MtrunA17_Chr5g0441581 26.797 612 399 15 9 604 1 579 5.24e-59 213
Msa0242600 MtrunA17_Chr2g0287651 27.513 567 377 11 51 603 81 627 6.75e-59 215
Msa0242600 MtrunA17_Chr5g0440451 25.901 583 382 10 45 603 43 599 3.32e-55 204
Msa0242600 MtrunA17_Chr6g0458391 27.931 580 367 17 38 603 218 760 1.98e-54 201
Msa0242600 MtrunA17_Chr6g0458391 31.579 133 82 3 33 165 79 202 8.98e-12 68.9
Msa0242600 MtrunA17_Chr3g0118611 29.710 414 249 8 219 610 110 503 2.46e-53 197
Msa0242600 MtrunA17_Chr2g0324011 25.796 597 415 13 39 623 4 584 1.88e-52 192
Msa0242600 MtrunA17_Chr2g0296781 26.370 584 366 16 51 604 3 552 1.27e-51 192
Msa0242600 MtrunA17_Chr5g0448511 29.491 373 257 4 236 603 21 392 4.94e-51 187
Msa0242600 MtrunA17_Chr2g0287061 26.003 573 365 12 38 603 176 696 4.92e-50 188
Msa0242600 MtrunA17_Chr1g0203051 24.382 607 408 15 10 595 45 621 1.01e-48 182
Msa0242600 MtrunA17_Chr1g0203721 25.729 583 390 13 41 603 59 618 1.43e-48 184
Msa0242600 MtrunA17_Chr6g0477261 27.540 443 306 9 174 604 2 441 3.03e-47 178
Msa0242600 MtrunA17_Chr1g0196541 23.171 656 429 15 51 680 3 609 2.93e-43 167
Msa0242600 MtrunA17_Chr2g0291581 23.826 575 393 10 45 603 71 616 3.01e-38 152
Msa0242600 MtrunA17_Chr2g0291591 24.908 546 353 15 36 557 55 567 1.44e-34 139
Msa0242600 MtrunA17_Chr1g0164591 27.628 333 200 5 130 446 1 308 6.98e-33 129
Msa0242600 MtrunA17_Chr3g0081281 54.839 93 42 0 191 283 1 93 7.76e-30 113
Msa0242600 MtrunA17_Chr7g0258861 27.119 295 201 7 39 329 4 288 1.46e-22 99.4
Msa0242600 MtrunA17_Chr1g0171741 31.638 177 99 8 11 173 86 254 8.92e-13 69.3
Msa0242600 MtrunA17_Chr7g0233911 36.364 110 63 3 45 154 34 136 2.33e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242600 AT1G10240.2 57.727 660 274 3 18 677 21 675 0.0 816
Msa0242600 AT1G10240.1 57.727 660 274 3 18 677 21 675 0.0 816
Msa0242600 AT5G28530.3 40.491 652 353 9 26 662 39 670 6.45e-164 490
Msa0242600 AT5G28530.2 40.491 652 353 9 26 662 39 670 6.45e-164 490
Msa0242600 AT5G28530.1 40.031 652 360 8 26 662 39 674 8.50e-164 489
Msa0242600 AT5G28530.5 37.072 642 326 10 26 662 39 607 8.86e-130 399
Msa0242600 AT5G28530.4 36.604 642 333 9 26 662 39 611 1.68e-129 399
Msa0242600 AT4G38180.1 30.729 576 385 9 41 610 69 636 1.15e-82 280
Msa0242600 AT4G15090.1 26.791 642 446 12 19 650 25 652 2.58e-63 227
Msa0242600 AT4G15090.5 26.791 642 446 12 19 650 25 652 2.58e-63 227
Msa0242600 AT4G15090.3 26.791 642 446 12 19 650 25 652 2.58e-63 227
Msa0242600 AT4G15090.2 26.791 642 446 12 19 650 25 652 2.58e-63 227
Msa0242600 AT4G15090.4 26.791 642 446 12 19 650 25 652 2.58e-63 227
Msa0242600 AT3G22170.2 25.509 639 409 17 22 628 33 636 1.53e-60 219
Msa0242600 AT3G22170.1 25.509 639 409 17 22 628 33 636 1.53e-60 219
Msa0242600 AT1G76320.3 27.353 563 373 10 51 603 3 539 2.22e-56 205
Msa0242600 AT1G76320.2 27.353 563 373 10 51 603 3 539 3.62e-56 205
Msa0242600 AT1G76320.1 27.353 563 373 10 51 603 3 539 4.30e-56 205
Msa0242600 AT1G76320.4 27.353 563 373 10 51 603 3 539 4.30e-56 205
Msa0242600 AT2G27110.2 26.403 606 373 17 11 603 29 574 1.44e-51 194
Msa0242600 AT2G27110.1 26.403 606 373 17 11 603 29 574 1.44e-51 194
Msa0242600 AT4G19990.7 25.958 574 364 11 48 603 38 568 1.89e-48 183
Msa0242600 AT4G19990.3 25.958 574 364 11 48 603 24 554 2.02e-48 183
Msa0242600 AT4G19990.4 25.958 574 364 11 48 603 24 554 2.02e-48 183
Msa0242600 AT4G19990.5 25.958 574 364 11 48 603 24 554 2.14e-48 183
Msa0242600 AT4G19990.6 25.958 574 364 11 48 603 24 554 3.91e-48 182
Msa0242600 AT4G19990.2 25.958 574 364 11 48 603 24 554 3.91e-48 182
Msa0242600 AT2G27110.3 29.765 383 259 7 227 603 51 429 6.42e-47 178
Msa0242600 AT1G52520.1 26.019 638 395 19 45 648 85 679 2.87e-46 176
Msa0242600 AT3G06250.2 26.990 578 335 18 45 603 190 699 5.65e-46 176
Msa0242600 AT3G06250.1 26.990 578 335 18 45 603 190 699 5.65e-46 176
Msa0242600 AT3G06250.3 26.990 578 335 18 45 603 190 699 5.65e-46 176
Msa0242600 AT1G80010.1 25.763 590 381 16 45 604 95 657 3.27e-43 167
Msa0242600 AT5G18960.2 25.220 567 362 15 45 603 211 723 7.52e-43 167
Msa0242600 AT5G18960.1 25.220 567 362 15 45 603 211 723 7.52e-43 167
Msa0242600 AT2G32250.5 23.768 568 369 13 48 607 41 552 1.76e-42 166
Msa0242600 AT4G19990.1 25.660 530 334 10 92 603 10 497 1.89e-42 165
Msa0242600 AT2G32250.2 23.768 568 369 13 48 607 41 552 2.29e-42 166
Msa0242600 AT2G32250.4 23.768 568 369 13 48 607 41 552 2.29e-42 166
Msa0242600 AT2G32250.6 23.768 568 369 13 48 607 41 552 2.38e-42 166
Msa0242600 AT2G32250.1 23.768 568 369 13 48 607 41 552 2.38e-42 166
Msa0242600 AT2G32250.3 23.768 568 369 13 48 607 41 552 2.38e-42 166
Msa0242600 AT2G32250.7 23.717 565 367 13 51 607 3 511 6.69e-42 164
Msa0242600 AT2G32250.8 23.717 565 367 13 51 607 3 511 7.18e-42 164
Msa0242600 AT4G38170.1 27.822 381 260 7 231 603 21 394 1.74e-41 160
Msa0242600 AT3G07500.1 26.484 219 142 7 15 225 3 210 1.26e-11 65.5

Find 184 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAAGCAAATGCATTATT+TGG 0.110665 2_2:+18915633 Msa0242600:three_prime_UTR
CATCTTCAGAAGGTTTATTT+TGG 0.139353 2_2:-18911735 None:intergenic
TCCAAATATTGTATCCTTTC+AGG 0.144098 2_2:-18915193 None:intergenic
ATGACATGCTGTTGGGAATT+TGG 0.166402 2_2:+18912301 Msa0242600:CDS
ATTCAATCATATGAGGTATT+TGG 0.211487 2_2:+18912237 Msa0242600:CDS
GTTCCATCGGCTCTACAATT+TGG 0.214855 2_2:+18914387 Msa0242600:CDS
ACCTCAATATGCATCCTTTC+TGG 0.234586 2_2:+18914913 Msa0242600:CDS
GATACAATATTTGGAATCTT+TGG 0.243804 2_2:+18915201 Msa0242600:CDS
GCCTGAAAGGATACAATATT+TGG 0.244750 2_2:+18915192 Msa0242600:CDS
TCACTTCAACTGTATGAAAT+TGG 0.252951 2_2:+18910392 Msa0242600:five_prime_UTR
TATACTCATTAAGGACATTC+TGG 0.255249 2_2:+18914491 Msa0242600:CDS
TCACATTATGCAGGCTTTCT+TGG 0.257492 2_2:+18914183 Msa0242600:intron
TTTGGTTTCAACACTTCTAA+TGG 0.258812 2_2:+18915219 Msa0242600:CDS
CAAAAGGCATGTTTACTTTC+GGG 0.259449 2_2:-18914286 None:intergenic
GTGTTAGAATCATCCGAAAA+TGG 0.272557 2_2:+18911457 Msa0242600:CDS
CTTGACAGAATTGTTTCTTC+TGG 0.282713 2_2:-18911523 None:intergenic
GTCCCTGAATGGCGTGTTAC+TGG 0.284993 2_2:+18911847 Msa0242600:CDS
AAGGCAAATGTTAAGATTAA+TGG 0.285271 2_2:+18911996 Msa0242600:CDS
TGCTAGTTGCGCCATGAAAA+TGG 0.292848 2_2:-18915162 None:intergenic
TTGAGGCGATATTTCTTTGC+AGG 0.296991 2_2:+18914526 Msa0242600:CDS
ACAAATCTTTGACCAATAAA+AGG 0.311831 2_2:-18911568 None:intergenic
CACATTATGCAGGCTTTCTT+GGG 0.312370 2_2:+18914184 Msa0242600:intron
CCGTTGGATGAAAACGTTAA+TGG 0.319103 2_2:-18914575 None:intergenic
GTACATGCGTATTGTGAAAA+AGG 0.319270 2_2:+18911813 Msa0242600:CDS
TGGCTTGGATTGGACAATAA+TGG 0.319336 2_2:+18912321 Msa0242600:CDS
ACAAAAGGCATGTTTACTTT+CGG 0.321090 2_2:-18914287 None:intergenic
ATGGAGGTTGCAAAGTGTTT+TGG 0.321516 2_2:+18914978 Msa0242600:CDS
TTATTAGCCTATACTCATTA+AGG 0.323374 2_2:+18914482 Msa0242600:CDS
CCTCATGATTCCATGGCTTT+AGG 0.327738 2_2:+18915433 Msa0242600:CDS
AACGATTCCGACGCGATTTA+CGG 0.329179 2_2:+18910319 Msa0242600:five_prime_UTR
CAACTTATGTATCGTTGAAT+TGG 0.338021 2_2:-18915699 None:intergenic
ACAAAGCAAATGCATTATTT+GGG 0.339023 2_2:+18915634 Msa0242600:three_prime_UTR
AATCGCGTCGGAATCGTTTC+CGG 0.340056 2_2:-18910314 None:intergenic
CTCACATCTATCTCTGTAAA+AGG 0.340205 2_2:-18912051 None:intergenic
AGGCAAATGGTGGATAAATA+TGG 0.340475 2_2:+18914439 Msa0242600:CDS
AACCACAGCGAGATGATTTA+CGG 0.342181 2_2:-18911783 None:intergenic
AAACCAGTAACACGCCATTC+AGG 0.361653 2_2:-18911850 None:intergenic
ATCGCGTCGGAATCGTTTCC+GGG 0.363872 2_2:-18910313 None:intergenic
GGATGATTCTAACACAAAAC+TGG 0.371625 2_2:-18911449 None:intergenic
TCACCATTATGTGCACAATA+TGG 0.372426 2_2:+18915520 Msa0242600:CDS
CTTTAGCAAACATGCATATA+CGG 0.380754 2_2:-18911960 None:intergenic
GATACTGATGAAATGATTCA+TGG 0.382834 2_2:+18915394 Msa0242600:CDS
TTCTCTCCAAGTTCTCTGAT+TGG 0.385450 2_2:+18914320 Msa0242600:CDS
CTTTAGTTGCGCCCTTCTGC+GGG 0.388321 2_2:+18912356 Msa0242600:CDS
GTGCTGCAACTAGCTCTTCC+TGG 0.388829 2_2:-18914892 None:intergenic
GGCCAACCCCATCTTTCCCT+CGG 0.389341 2_2:-18911666 None:intergenic
GTCAGTACTAAAAGCAAAGT+TGG 0.401556 2_2:-18911407 None:intergenic
ATAACAAAATTAATTCAAAT+AGG 0.408107 2_2:-18915750 None:intergenic
CTCTTATCATCAGGAGATAT+CGG 0.409413 2_2:-18911937 None:intergenic
CACCGCACCCGAGGGAAAGA+TGG 0.410004 2_2:+18911658 Msa0242600:CDS
CAAAATAAACCTTCTGAAGA+TGG 0.410862 2_2:+18911736 Msa0242600:CDS
GTTGGGAATTTGGCTTGGAT+TGG 0.415439 2_2:+18912311 Msa0242600:CDS
TCAAGATAGATAATAATAAC+AGG 0.416672 2_2:+18912181 Msa0242600:CDS
CAGAAAGTCTGCTTGAAAAC+AGG 0.419908 2_2:+18914812 Msa0242600:CDS
TGATCAGTCAGTATTGTTTG+TGG 0.423171 2_2:-18914226 None:intergenic
TGGATCTGATTGCTCAATAA+TGG 0.423232 2_2:+18915549 Msa0242600:CDS
AGATTAATGGAGCTAGAAAA+AGG 0.423796 2_2:+18912009 Msa0242600:CDS
TTGAATAAGACGCACCTCAT+TGG 0.427145 2_2:-18911905 None:intergenic
AGATCTGCTGCAACACAATT+CGG 0.428586 2_2:-18910365 None:intergenic
AATATGAGTGAAGATGCATT+AGG 0.432322 2_2:+18915580 Msa0242600:CDS
AATTCCCAACAGCATGTCAT+AGG 0.437999 2_2:-18912298 None:intergenic
TGGAGTTTGCTCAAGGCATA+AGG 0.440065 2_2:-18914872 None:intergenic
ATGCTGTTGGGAATTTGGCT+TGG 0.440367 2_2:+18912306 Msa0242600:CDS
ATATGCATGTTTGCTAAAGC+TGG 0.454030 2_2:+18911964 Msa0242600:CDS
TCATCAGTATCTTCTACCTC+TGG 0.460431 2_2:-18915382 None:intergenic
AAGAAATATCGCCTCAAGAA+TGG 0.462464 2_2:-18914520 None:intergenic
GGGAAAGATGGGGTTGGCCG+AGG 0.467224 2_2:+18911670 Msa0242600:CDS
CTTATGTATCGTTGAATTGG+AGG 0.467458 2_2:-18915696 None:intergenic
CCGATCCGATGGCGAAGCAT+TGG 0.468854 2_2:+18915124 Msa0242600:CDS
ACACGCAGCAGTGAACTTCC+CGG 0.472012 2_2:+18910295 Msa0242600:five_prime_UTR
CATATACGGCTCTTATCATC+AGG 0.473122 2_2:-18911946 None:intergenic
ATATGAGTGAAGATGCATTA+GGG 0.474188 2_2:+18915581 Msa0242600:CDS
GAGAATATGCCATATACAAA+AGG 0.474322 2_2:-18914302 None:intergenic
GCTTTAGTTGCGCCCTTCTG+CGG 0.475590 2_2:+18912355 Msa0242600:CDS
AAAATAAACCTTCTGAAGAT+GGG 0.478175 2_2:+18911737 Msa0242600:CDS
CGGATCGGTAAATATTGATC+CGG 0.479172 2_2:-18915109 None:intergenic
CTCATCAATTCAATCATATG+AGG 0.479395 2_2:+18912230 Msa0242600:CDS
ACCGCACCCGAGGGAAAGAT+GGG 0.481862 2_2:+18911659 Msa0242600:CDS
TGTCCATATTGTGCACATAA+TGG 0.485930 2_2:-18915523 None:intergenic
GTGGCAGCATGGGATTCTAT+AGG 0.487656 2_2:-18914839 None:intergenic
ATAAAACCAATCAGAGAACT+TGG 0.489580 2_2:-18914326 None:intergenic
CTTGGGCTTCATGAAAGGAA+AGG 0.491097 2_2:+18914201 Msa0242600:CDS
ATACTCATTAAGGACATTCT+GGG 0.491639 2_2:+18914492 Msa0242600:CDS
GCCAACCCCATCTTTCCCTC+GGG 0.498859 2_2:-18911665 None:intergenic
CAGCTCCATCATCGTCAAGC+TGG 0.500752 2_2:+18910268 Msa0242600:five_prime_UTR
CCCCATCTTTCCCTCGGGTG+CGG 0.504235 2_2:-18911660 None:intergenic
TTATGCCTTGAGCAAACTCC+AGG 0.504552 2_2:+18914874 Msa0242600:CDS
TCGGCTCTACAATTTGGAAA+TGG 0.504763 2_2:+18914393 Msa0242600:CDS
TGCTTGTGACCAAGTTTCAA+TGG 0.504988 2_2:+18915273 Msa0242600:CDS
GCTTTCTTGGGCTTCATGAA+AGG 0.511793 2_2:+18914196 Msa0242600:CDS
GAGGCCTATGACATGCTGTT+GGG 0.513583 2_2:+18912294 Msa0242600:CDS
CATGGCTTTAGGCAAGCTAA+AGG 0.513686 2_2:+18915444 Msa0242600:CDS
TGAAGAAAGCTGGAGGCAAA+TGG 0.514494 2_2:+18914426 Msa0242600:CDS
AAGGCGTTCCTCGGTTTCAA+CGG 0.516469 2_2:-18915245 None:intergenic
CTCTTCCTGGAGTTTGCTCA+AGG 0.516928 2_2:-18914879 None:intergenic
TGACTCCAGCTTGACGATGA+TGG 0.518258 2_2:-18910273 None:intergenic
AACCAGTAACACGCCATTCA+GGG 0.519550 2_2:-18911849 None:intergenic
TGCAAATCCTCATGATTCCA+TGG 0.519849 2_2:+18915426 Msa0242600:CDS
CTTTAGCTTGCCTAAAGCCA+TGG 0.519923 2_2:-18915443 None:intergenic
AGAATGTCCTTAATGAGTAT+AGG 0.523345 2_2:-18914489 None:intergenic
GAGTACATTGCATGGTCCTA+CGG 0.523416 2_2:+18912207 Msa0242600:CDS
AGCAACATCAAGGCGTTCCT+CGG 0.524644 2_2:-18915254 None:intergenic
AAGGAGAGAAGGGCAAGAGA+TGG 0.526646 2_2:+18915463 Msa0242600:CDS
GCATCCTTTCTGGTTGATGA+AGG 0.529559 2_2:+18914923 Msa0242600:CDS
TCAGTACTAAAAGCAAAGTT+GGG 0.536260 2_2:-18911406 None:intergenic
CTAGCAGGGATCAGCCTGAA+AGG 0.537919 2_2:+18915179 Msa0242600:CDS
AAATGGCACAGATTTGTCTC+AGG 0.538047 2_2:+18911474 Msa0242600:CDS
ATTTACGCCATGTGATGACC+TGG 0.539389 2_2:-18915320 None:intergenic
AACCTCCATCGGTCTGAGAA+TGG 0.539487 2_2:-18914964 None:intergenic
AAACACTTTGCAACCTCCAT+CGG 0.539933 2_2:-18914975 None:intergenic
GGACTCGGTCTGACATGTAC+TGG 0.541636 2_2:-18914554 None:intergenic
GGCATAAGGAGTAAGTATAG+TGG 0.542397 2_2:-18914858 None:intergenic
AGAGGCCTATGACATGCTGT+TGG 0.543489 2_2:+18912293 Msa0242600:CDS
CAAAGCAAATGCATTATTTG+GGG 0.544923 2_2:+18915635 Msa0242600:three_prime_UTR
CAGTATCTTCTACCTCTGGC+AGG 0.547423 2_2:-18915378 None:intergenic
TAGGCAAGCTAAAGGAGAGA+AGG 0.550540 2_2:+18915452 Msa0242600:CDS
TCTTGCATTTAGTTATGCAT+CGG 0.553812 2_2:+18915345 Msa0242600:CDS
ATCAATATTTACCGATCCGA+TGG 0.556315 2_2:+18915113 Msa0242600:CDS
ACCAGAAAGGATGCATATTG+AGG 0.558654 2_2:-18914914 None:intergenic
AGTAAGTATAGTGGCAGCAT+GGG 0.558789 2_2:-18914849 None:intergenic
GCATACTTTCATCCCGCAGA+AGG 0.560022 2_2:-18912368 None:intergenic
CTAAAGCTGGAATGTCGGTA+AGG 0.564431 2_2:+18911977 Msa0242600:CDS
GAGTAAGTATAGTGGCAGCA+TGG 0.565564 2_2:-18914850 None:intergenic
GTGATAGCACCATTGAAACT+TGG 0.565620 2_2:-18915282 None:intergenic
AGTGGAAAGCTGAGTTCCAT+CGG 0.569331 2_2:+18914374 Msa0242600:CDS
CTTGGTCACAAGCAACATCA+AGG 0.570174 2_2:-18915264 None:intergenic
TGTGCACAATATGGACATGA+TGG 0.571985 2_2:+18915529 Msa0242600:CDS
CCAATGCTTCGCCATCGGAT+CGG 0.572305 2_2:-18915124 None:intergenic
TGAGGTATTTGGTGATGCTG+TGG 0.573633 2_2:+18912248 Msa0242600:CDS
AGGCAAGCTAAAGGAGAGAA+GGG 0.573940 2_2:+18915453 Msa0242600:CDS
TGGATATGATTCTATGAACA+AGG 0.575281 2_2:+18910412 Msa0242600:five_prime_UTR
GCTCTACAATTTGGAAATGG+TGG 0.580387 2_2:+18914396 Msa0242600:CDS
TGTAGTGAATAGAAGTAACT+AGG 0.580877 2_2:+18915608 Msa0242600:exon
ACAACCTTCATCAACCAGAA+AGG 0.583485 2_2:-18914927 None:intergenic
TTGGGTCGCAATACGATGAG+TGG 0.584461 2_2:+18914356 Msa0242600:CDS
TCTGGGCTTTACCATTCTTG+AGG 0.584691 2_2:+18914509 Msa0242600:CDS
TTTCCAAATTGTAGAGCCGA+TGG 0.585557 2_2:-18914390 None:intergenic
GAGCAAAGCAAAAGATGCAA+AGG 0.586020 2_2:+18914783 Msa0242600:CDS
CAGCTGATGTGCTCTTGACA+AGG 0.588190 2_2:-18915004 None:intergenic
AATCCCTCCTCGTTACTCCT+CGG 0.588500 2_2:-18911687 None:intergenic
ACAGACCAATGCTTCGCCAT+CGG 0.588693 2_2:-18915129 None:intergenic
CATACTTTCATCCCGCAGAA+GGG 0.593580 2_2:-18912367 None:intergenic
AAATAAACCTTCTGAAGATG+GGG 0.596801 2_2:+18911738 Msa0242600:CDS
GTCATAGGCCTCTACTCGGT+AGG 0.599446 2_2:-18912283 None:intergenic
CACGTGTTAAAACTCTTCCC+AGG 0.602561 2_2:+18915302 Msa0242600:CDS
GCATGTCATAGGCCTCTACT+CGG 0.603797 2_2:-18912287 None:intergenic
ACCCGAGGGAAAGATGGGGT+TGG 0.604145 2_2:+18911664 Msa0242600:CDS
ATTGTGCACTCAAGAACCGT+TGG 0.604864 2_2:-18914591 None:intergenic
TGATACAACCTACCGAGTAG+AGG 0.608589 2_2:+18912275 Msa0242600:CDS
GGGGAGGAGGAAAAGCGCAA+AGG 0.609723 2_2:+18911758 Msa0242600:CDS
GTTTGCTAAAGCTGGAATGT+CGG 0.610570 2_2:+18911972 Msa0242600:CDS
TTTCATACAGTTGAAGTGAG+AGG 0.611594 2_2:-18910388 None:intergenic
TGCCTGAAAACTCAAATAGA+CGG 0.614950 2_2:-18915033 None:intergenic
GGATCGGTAAATATTGATCC+GGG 0.615359 2_2:-18915108 None:intergenic
CACCATTCTCAGACCGATGG+AGG 0.619807 2_2:+18914962 Msa0242600:CDS
GGATGACATTGGCACTGTCG+AGG 0.620402 2_2:+18911495 Msa0242600:CDS
TGATTGAATTGATGAGCCGT+AGG 0.623124 2_2:-18912223 None:intergenic
TAAGTTGTCTACCACTCTTG+TGG 0.623469 2_2:+18915715 Msa0242600:three_prime_UTR
AAAGCAAATGCATTATTTGG+GGG 0.625057 2_2:+18915636 Msa0242600:three_prime_UTR
TGGCCGAGGAGTAACGAGGA+GGG 0.628175 2_2:+18911684 Msa0242600:CDS
AATGGAATCCGTTGAAACCG+AGG 0.632410 2_2:+18915237 Msa0242600:CDS
GATGAAAACGTTAATGGACT+CGG 0.633126 2_2:-18914569 None:intergenic
ATTAGACGACACCGCACCCG+AGG 0.637401 2_2:+18911649 Msa0242600:CDS
AGACACCATTCTCAGACCGA+TGG 0.638459 2_2:+18914959 Msa0242600:CDS
TTGGCCGAGGAGTAACGAGG+AGG 0.640151 2_2:+18911683 Msa0242600:CDS
CCTAAAGCCATGGAATCATG+AGG 0.642544 2_2:-18915433 None:intergenic
ACTGACAGCAGAATGTCAGA+AGG 0.645913 2_2:+18911424 Msa0242600:exon
GATTTGTCTCAGGATGACAT+TGG 0.649568 2_2:+18911484 Msa0242600:CDS
AGAAAGCTGGAGGCAAATGG+TGG 0.650737 2_2:+18914429 Msa0242600:CDS
ACAGGCTCGAGTACATTGCA+TGG 0.652102 2_2:+18912199 Msa0242600:CDS
TACTGACTGATCATAACACA+TGG 0.653234 2_2:+18914236 Msa0242600:CDS
TGAGTTGTTAAAATCCAATG+AGG 0.655034 2_2:+18911891 Msa0242600:CDS
TTTGACCAATAAAAGGAACA+AGG 0.658851 2_2:-18911561 None:intergenic
TTGATATTAGTAGAAAACGT+AGG 0.664945 2_2:+18915488 Msa0242600:CDS
ATGGCGGCCGTAAATCGCGT+CGG 0.672590 2_2:-18910326 None:intergenic
ACTCTTCCCAGGTCATCACA+TGG 0.672595 2_2:+18915313 Msa0242600:CDS
TTTACGCCATGTGATGACCT+GGG 0.676760 2_2:-18915319 None:intergenic
AATAAACCTTCTGAAGATGG+GGG 0.678235 2_2:+18911739 Msa0242600:CDS
TTAGACGACACCGCACCCGA+GGG 0.686513 2_2:+18911650 Msa0242600:CDS
TTTGGGGAAATCCTCCGCGG+TGG 0.687568 2_2:-18911717 None:intergenic
AACCGTAAATCATCTCGCTG+TGG 0.688131 2_2:+18911781 Msa0242600:CDS
GGATTCATTGATCCTGCCAG+AGG 0.692463 2_2:+18915366 Msa0242600:CDS
GGGTTGGCCGAGGAGTAACG+AGG 0.708315 2_2:+18911680 Msa0242600:CDS
CCGCACCCGAGGGAAAGATG+GGG 0.712775 2_2:+18911660 Msa0242600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATCTTATTTTTAAATTTT+AGG + chr2_2:18913088-18913107 Msa0242600:intron 10.0%
!!! GATCTTATTTTTAAATTTTA+GGG + chr2_2:18913089-18913108 Msa0242600:intron 10.0%
!! TAGTAAATTATAGTTAATTA+TGG - chr2_2:18914726-18914745 None:intergenic 10.0%
!! ATAACAAAATTAATTCAAAT+AGG - chr2_2:18915753-18915772 None:intergenic 10.0%
!! TAAGATGAAATTAATAAAGT+GGG - chr2_2:18910451-18910470 None:intergenic 15.0%
!! TTAAGATGAAATTAATAAAG+TGG - chr2_2:18910452-18910471 None:intergenic 15.0%
!!! CATTTTTTTTTTAGTATTCA+GGG + chr2_2:18910499-18910518 Msa0242600:intron 15.0%
!!! GTGTATGTTATTTAATAATT+GGG + chr2_2:18910631-18910650 Msa0242600:intron 15.0%
!!! TGTATGTTATTTAATAATTG+GGG + chr2_2:18910632-18910651 Msa0242600:intron 15.0%
!! AAGTAATTTGATTCTTTATT+TGG + chr2_2:18911214-18911233 Msa0242600:intron 15.0%
!!! GATATGGATTAAATTTTAAA+CGG + chr2_2:18912678-18912697 Msa0242600:intron 15.0%
!!! TCTTTTAATATATAGATGAA+GGG - chr2_2:18912792-18912811 None:intergenic 15.0%
!!! ATCTATTTACTAAATTTTCA+TGG + chr2_2:18913006-18913025 Msa0242600:intron 15.0%
!! TAGGGAAAAAAAATTAAAAA+AGG + chr2_2:18913107-18913126 Msa0242600:intron 15.0%
!! TAAAGTTTAATCTTGAATAA+TGG + chr2_2:18913215-18913234 Msa0242600:intron 15.0%
!!! TTGAATAATGGATTTTTTTT+TGG + chr2_2:18913227-18913246 Msa0242600:intron 15.0%
!!! AATTTTGCCTAATAAATATT+TGG + chr2_2:18913615-18913634 Msa0242600:intron 15.0%
!!! ATTTTGCCTAATAAATATTT+GGG + chr2_2:18913616-18913635 Msa0242600:intron 15.0%
!!! AAAATTTGCTATACAAATAT+TGG - chr2_2:18914109-18914128 None:intergenic 15.0%
!! AATTAACTATAATTTACTAC+AGG + chr2_2:18914727-18914746 Msa0242600:intron 15.0%
!! AAATTAATAAAGTGGGAAAT+GGG - chr2_2:18910444-18910463 None:intergenic 20.0%
!!! GCATTTTTTTTTTAGTATTC+AGG + chr2_2:18910498-18910517 Msa0242600:intron 20.0%
!!! CGTGTATGTTATTTAATAAT+TGG + chr2_2:18910630-18910649 Msa0242600:intron 20.0%
!! AAATCTCAAAATAGTTAGTT+AGG - chr2_2:18911136-18911155 None:intergenic 20.0%
!!! AACTAACTATTTTGAGATTT+TGG + chr2_2:18911136-18911155 Msa0242600:intron 20.0%
!!! ACTAACTATTTTGAGATTTT+GGG + chr2_2:18911137-18911156 Msa0242600:intron 20.0%
!! AATGTGATATAAGACTTAAA+AGG - chr2_2:18911336-18911355 None:intergenic 20.0%
!! TCAAGATAGATAATAATAAC+AGG + chr2_2:18912181-18912200 Msa0242600:CDS 20.0%
!! ATGCTATCATTAAAAAAGTA+AGG - chr2_2:18912587-18912606 None:intergenic 20.0%
!!! CTCTTTTAATATATAGATGA+AGG - chr2_2:18912793-18912812 None:intergenic 20.0%
!! AATAGATAACTAATTAGACA+AGG - chr2_2:18912993-18913012 None:intergenic 20.0%
!! CTTAAACCCAAATATTTATT+AGG - chr2_2:18913625-18913644 None:intergenic 20.0%
!!! AAGAAACATATGAACTTTTA+TGG - chr2_2:18913754-18913773 None:intergenic 20.0%
!! TTAAAAAGTTCACATGTTTA+AGG - chr2_2:18913807-18913826 None:intergenic 20.0%
!! AACCAAGACATTTAAAAAAA+AGG - chr2_2:18913849-18913868 None:intergenic 20.0%
!!! ATTGGTTTTATTTACTTCTT+GGG + chr2_2:18914338-18914357 Msa0242600:CDS 20.0%
!! ATTTGCTCAAAAAAAAACAA+AGG - chr2_2:18914665-18914684 None:intergenic 20.0%
! AATTAATAAAGTGGGAAATG+GGG - chr2_2:18910443-18910462 None:intergenic 25.0%
! GAAATTAATAAAGTGGGAAA+TGG - chr2_2:18910445-18910464 None:intergenic 25.0%
!!! TTTTTTTTAGTATTCAGGGT+AGG + chr2_2:18910503-18910522 Msa0242600:intron 25.0%
!!! ATTTTCAATCGATTCAATGT+GGG - chr2_2:18910670-18910689 None:intergenic 25.0%
! TTGAATCGATTGAAAATGTT+CGG + chr2_2:18910673-18910692 Msa0242600:intron 25.0%
!! TTTTATCCAAGATTTGAACT+CGG + chr2_2:18910981-18911000 Msa0242600:intron 25.0%
!!! TGGTCTAGTTTTTAAAACAT+TGG + chr2_2:18911062-18911081 Msa0242600:intron 25.0%
! GACTTAAAAGGTGAATTAAT+AGG - chr2_2:18911324-18911343 None:intergenic 25.0%
! ACAAATCTTTGACCAATAAA+AGG - chr2_2:18911571-18911590 None:intergenic 25.0%
!!! ATCTTCAGAAGGTTTATTTT+GGG - chr2_2:18911737-18911756 None:intergenic 25.0%
!! AAAATAAACCTTCTGAAGAT+GGG + chr2_2:18911737-18911756 Msa0242600:CDS 25.0%
!!! ATTTTAACAACTCATGATTG+TGG - chr2_2:18911885-18911904 None:intergenic 25.0%
! AAGGCAAATGTTAAGATTAA+TGG + chr2_2:18911996-18912015 Msa0242600:CDS 25.0%
!! ATTCAATCATATGAGGTATT+TGG + chr2_2:18912237-18912256 Msa0242600:CDS 25.0%
! CTTCTTGATTACTTGATATT+TGG + chr2_2:18912468-18912487 Msa0242600:intron 25.0%
! ACAATACCATCATATCTTAT+CGG - chr2_2:18912547-18912566 None:intergenic 25.0%
! TATGTGGAAAAACCAAAAAT+GGG - chr2_2:18912736-18912755 None:intergenic 25.0%
! ATATGTGGAAAAACCAAAAA+TGG - chr2_2:18912737-18912756 None:intergenic 25.0%
! TTTGATCATATAAGCTATGA+TGG + chr2_2:18913309-18913328 Msa0242600:intron 25.0%
! TAGGAAGATAAAAACTACAA+TGG - chr2_2:18913399-18913418 None:intergenic 25.0%
!! TTTATCTTCCTATGATTTTC+AGG + chr2_2:18913407-18913426 Msa0242600:intron 25.0%
!! TTATCTTCCTATGATTTTCA+GGG + chr2_2:18913408-18913427 Msa0242600:intron 25.0%
! ACTTGAACAAAAAGACATAA+AGG + chr2_2:18913550-18913569 Msa0242600:intron 25.0%
! AAAGACATAAAGGACTAATA+CGG + chr2_2:18913560-18913579 Msa0242600:intron 25.0%
! GAAATAACTTAAAGGATGAT+AGG + chr2_2:18913589-18913608 Msa0242600:intron 25.0%
!! CATATGAACTTTTATGGTTT+TGG - chr2_2:18913748-18913767 None:intergenic 25.0%
!!! AAAAGGTCACATGTTTTTTT+TGG - chr2_2:18913832-18913851 None:intergenic 25.0%
!!! GACCTTTTTTTTAAATGTCT+TGG + chr2_2:18913844-18913863 Msa0242600:intron 25.0%
! TTACATGCATATGAAATTCA+AGG - chr2_2:18913920-18913939 None:intergenic 25.0%
!!! GATTGGTTTTATTTACTTCT+TGG + chr2_2:18914337-18914356 Msa0242600:CDS 25.0%
!! TTATTAGCCTATACTCATTA+AGG + chr2_2:18914482-18914501 Msa0242600:CDS 25.0%
! TAACTATAATTTACTACAGG+TGG + chr2_2:18914730-18914749 Msa0242600:intron 25.0%
!! TCTTCTTTTAACCATTTTCA+TGG + chr2_2:18915151-18915170 Msa0242600:CDS 25.0%
!! GATACAATATTTGGAATCTT+TGG + chr2_2:18915201-18915220 Msa0242600:CDS 25.0%
! TTGATATTAGTAGAAAACGT+AGG + chr2_2:18915488-18915507 Msa0242600:CDS 25.0%
! TACAAAGCAAATGCATTATT+TGG + chr2_2:18915633-18915652 Msa0242600:three_prime_UTR 25.0%
! ACAAAGCAAATGCATTATTT+GGG + chr2_2:18915634-18915653 Msa0242600:three_prime_UTR 25.0%
TCACTTCAACTGTATGAAAT+TGG + chr2_2:18910392-18910411 Msa0242600:five_prime_UTR 30.0%
TGGATATGATTCTATGAACA+AGG + chr2_2:18910412-18910431 Msa0242600:five_prime_UTR 30.0%
TAGTGATGAATTTCATCTCA+AGG + chr2_2:18910536-18910555 Msa0242600:intron 30.0%
AGTGATGAATTTCATCTCAA+GGG + chr2_2:18910537-18910556 Msa0242600:intron 30.0%
!! CATTTTCAATCGATTCAATG+TGG - chr2_2:18910671-18910690 None:intergenic 30.0%
!!! CAATGTTTTGAAAACCGAAT+TGG + chr2_2:18910762-18910781 Msa0242600:intron 30.0%
ATGATTCAACTGCATTAAAC+TGG + chr2_2:18910812-18910831 Msa0242600:intron 30.0%
TGATTCAACTGCATTAAACT+GGG + chr2_2:18910813-18910832 Msa0242600:intron 30.0%
!!! GTTTAGCTTTTTTCTTGGTA+TGG + chr2_2:18910920-18910939 Msa0242600:intron 30.0%
!!! TTTTTTCTTGGTATGGAGTT+TGG + chr2_2:18910927-18910946 Msa0242600:intron 30.0%
ATCTTGGATAAAACAATCCT+TGG - chr2_2:18910974-18910993 None:intergenic 30.0%
TTTATCCAAGATTTGAACTC+GGG + chr2_2:18910982-18911001 Msa0242600:intron 30.0%
AAATAGTTAGTTAGGACTAG+CGG - chr2_2:18911128-18911147 None:intergenic 30.0%
TCAGTACTAAAAGCAAAGTT+GGG - chr2_2:18911409-18911428 None:intergenic 30.0%
! GTTAACCTTGTTCCTTTTAT+TGG + chr2_2:18911556-18911575 Msa0242600:CDS 30.0%
TTTGACCAATAAAAGGAACA+AGG - chr2_2:18911564-18911583 None:intergenic 30.0%
! TGCAGTTTTGCTAAACAATT+TGG + chr2_2:18911619-18911638 Msa0242600:CDS 30.0%
!!! TCTTCAGAAGGTTTATTTTG+GGG - chr2_2:18911736-18911755 None:intergenic 30.0%
! CATCTTCAGAAGGTTTATTT+TGG - chr2_2:18911738-18911757 None:intergenic 30.0%
! CAAAATAAACCTTCTGAAGA+TGG + chr2_2:18911736-18911755 Msa0242600:CDS 30.0%
! AAATAAACCTTCTGAAGATG+GGG + chr2_2:18911738-18911757 Msa0242600:CDS 30.0%
TGAGTTGTTAAAATCCAATG+AGG + chr2_2:18911891-18911910 Msa0242600:CDS 30.0%
CTTTAGCAAACATGCATATA+CGG - chr2_2:18911963-18911982 None:intergenic 30.0%
AGATTAATGGAGCTAGAAAA+AGG + chr2_2:18912009-18912028 Msa0242600:CDS 30.0%
CTCATCAATTCAATCATATG+AGG + chr2_2:18912230-18912249 Msa0242600:CDS 30.0%
! TTTAAAGCCCATGAAAAAGA+CGG - chr2_2:18912393-18912412 None:intergenic 30.0%
TCAAATACAAGATTGTCAAG+TGG - chr2_2:18912448-18912467 None:intergenic 30.0%
! TGATTACTTGATATTTGGTG+TGG + chr2_2:18912473-18912492 Msa0242600:intron 30.0%
!! GATTACTTGATATTTGGTGT+GGG + chr2_2:18912474-18912493 Msa0242600:intron 30.0%
! TTTTGTCCGATAAGATATGA+TGG + chr2_2:18912538-18912557 Msa0242600:intron 30.0%
AGAATTGTAGAAAAGGTCAA+CGG - chr2_2:18912623-18912642 None:intergenic 30.0%
TGTAACGAGAATTGTAGAAA+AGG - chr2_2:18912630-18912649 None:intergenic 30.0%
TCGTTACAAAAACATCTACA+TGG + chr2_2:18912642-18912661 Msa0242600:intron 30.0%
AAAACCAAAAATGGGAAAGA+AGG - chr2_2:18912728-18912747 None:intergenic 30.0%
AAATCGAGTGAATTTAGTGA+GGG - chr2_2:18912929-18912948 None:intergenic 30.0%
AAAATCGAGTGAATTTAGTG+AGG - chr2_2:18912930-18912949 None:intergenic 30.0%
! TTTTTGTGTTGCAGATCATA+TGG + chr2_2:18912946-18912965 Msa0242600:intron 30.0%
!! AGATCATATGGTTCTGTTTT+AGG + chr2_2:18912958-18912977 Msa0242600:intron 30.0%
ACTTGATGTTGAAATCCTTT+GGG - chr2_2:18913067-18913086 None:intergenic 30.0%
GAAATTGGAACTACAACTAT+GGG - chr2_2:18913158-18913177 None:intergenic 30.0%
TGAAATTGGAACTACAACTA+TGG - chr2_2:18913159-18913178 None:intergenic 30.0%
!!! CCAAGAATGTGTTTTGAAAT+TGG - chr2_2:18913173-18913192 None:intergenic 30.0%
CCAATTTCAAAACACATTCT+TGG + chr2_2:18913170-18913189 Msa0242600:intron 30.0%
! GTGAAATTTTGTGACATGTA+TGG + chr2_2:18913192-18913211 Msa0242600:intron 30.0%
TTAGACTTATACTGAGAAGT+TGG + chr2_2:18913252-18913271 Msa0242600:intron 30.0%
TATGAAACCCTGAAAATCAT+AGG - chr2_2:18913418-18913437 None:intergenic 30.0%
!! ATGATTTTCAGGGTTTCATA+AGG + chr2_2:18913418-18913437 Msa0242600:intron 30.0%
CTGTTACTAAAATGTCTATG+TGG - chr2_2:18913497-18913516 None:intergenic 30.0%
!! CACATAGACATTTTAGTAAC+AGG + chr2_2:18913495-18913514 Msa0242600:intron 30.0%
ATCCCTAACTCATAATATGT+GGG - chr2_2:18913528-18913547 None:intergenic 30.0%
GGCACAATGAAATAACTTAA+AGG + chr2_2:18913581-18913600 Msa0242600:intron 30.0%
!! TTTAAATGTCTTGGTTTGTG+TGG + chr2_2:18913853-18913872 Msa0242600:intron 30.0%
ATTAGTGCCATAAAATACAC+CGG + chr2_2:18913963-18913982 Msa0242600:intron 30.0%
! TATTCTTCCGGTGTATTTTA+TGG - chr2_2:18913973-18913992 None:intergenic 30.0%
TCTTGTCTATTGAATCTAGT+AGG + chr2_2:18914003-18914022 Msa0242600:intron 30.0%
TCATCTTATTCACATTATGC+AGG + chr2_2:18914174-18914193 Msa0242600:intron 30.0%
! ACAAAAGGCATGTTTACTTT+CGG - chr2_2:18914290-18914309 None:intergenic 30.0%
! GTAAACATGCCTTTTGTATA+TGG + chr2_2:18914293-18914312 Msa0242600:CDS 30.0%
GAGAATATGCCATATACAAA+AGG - chr2_2:18914305-18914324 None:intergenic 30.0%
ATAAAACCAATCAGAGAACT+TGG - chr2_2:18914329-18914348 None:intergenic 30.0%
AGAATGTCCTTAATGAGTAT+AGG - chr2_2:18914492-18914511 None:intergenic 30.0%
TATACTCATTAAGGACATTC+TGG + chr2_2:18914491-18914510 Msa0242600:CDS 30.0%
ATACTCATTAAGGACATTCT+GGG + chr2_2:18914492-18914511 Msa0242600:CDS 30.0%
! TAATAACTGTTTTCACATCC+CGG + chr2_2:18915090-18915109 Msa0242600:CDS 30.0%
TCCAAATATTGTATCCTTTC+AGG - chr2_2:18915196-18915215 None:intergenic 30.0%
! TTTGGTTTCAACACTTCTAA+TGG + chr2_2:18915219-18915238 Msa0242600:CDS 30.0%
TCTTGCATTTAGTTATGCAT+CGG + chr2_2:18915345-18915364 Msa0242600:CDS 30.0%
GATACTGATGAAATGATTCA+TGG + chr2_2:18915394-18915413 Msa0242600:CDS 30.0%
AATATGAGTGAAGATGCATT+AGG + chr2_2:18915580-18915599 Msa0242600:CDS 30.0%
ATATGAGTGAAGATGCATTA+GGG + chr2_2:18915581-18915600 Msa0242600:CDS 30.0%
TGTAGTGAATAGAAGTAACT+AGG + chr2_2:18915608-18915627 Msa0242600:exon 30.0%
CAAAGCAAATGCATTATTTG+GGG + chr2_2:18915635-18915654 Msa0242600:three_prime_UTR 30.0%
AAAGCAAATGCATTATTTGG+GGG + chr2_2:18915636-18915655 Msa0242600:three_prime_UTR 30.0%
CAACTTATGTATCGTTGAAT+TGG - chr2_2:18915702-18915721 None:intergenic 30.0%
!!! AACACAATTCGGTTTTGAAG+AGG - chr2_2:18910357-18910376 None:intergenic 35.0%
TTTCATACAGTTGAAGTGAG+AGG - chr2_2:18910391-18910410 None:intergenic 35.0%
! ATCGATTCAATGTGGGATTT+GGG - chr2_2:18910663-18910682 None:intergenic 35.0%
! AATCGATTCAATGTGGGATT+TGG - chr2_2:18910664-18910683 None:intergenic 35.0%
!!! GTTCGGTTTAGCTTTTTTCT+TGG + chr2_2:18910915-18910934 Msa0242600:intron 35.0%
ACTGAGATAGTTACAGTACT+CGG - chr2_2:18911104-18911123 None:intergenic 35.0%
AGATGTTCAAACCTGAAAGA+CGG - chr2_2:18911382-18911401 None:intergenic 35.0%
GTCAGTACTAAAAGCAAAGT+TGG - chr2_2:18911410-18911429 None:intergenic 35.0%
GGATGATTCTAACACAAAAC+TGG - chr2_2:18911452-18911471 None:intergenic 35.0%
GTGTTAGAATCATCCGAAAA+TGG + chr2_2:18911457-18911476 Msa0242600:CDS 35.0%
!!! AGACAAATCTGTGCCATTTT+CGG - chr2_2:18911473-18911492 None:intergenic 35.0%
! CTTGACAGAATTGTTTCTTC+TGG - chr2_2:18911526-18911545 None:intergenic 35.0%
! AATAAACCTTCTGAAGATGG+GGG + chr2_2:18911739-18911758 Msa0242600:CDS 35.0%
GTACATGCGTATTGTGAAAA+AGG + chr2_2:18911813-18911832 Msa0242600:CDS 35.0%
CTCTTATCATCAGGAGATAT+CGG - chr2_2:18911940-18911959 None:intergenic 35.0%
! ATATGCATGTTTGCTAAAGC+TGG + chr2_2:18911964-18911983 Msa0242600:CDS 35.0%
!! CTAGAAAAAGGCATCAAACT+TGG + chr2_2:18912021-18912040 Msa0242600:CDS 35.0%
CTCACATCTATCTCTGTAAA+AGG - chr2_2:18912054-18912073 None:intergenic 35.0%
!! AAAGTATGCCGTCTTTTTCA+TGG + chr2_2:18912382-18912401 Msa0242600:CDS 35.0%
!! AAGTATGCCGTCTTTTTCAT+GGG + chr2_2:18912383-18912402 Msa0242600:CDS 35.0%
!! GTCTTTTTCATGGGCTTTAA+AGG + chr2_2:18912392-18912411 Msa0242600:CDS 35.0%
GTGGAAGTTGTAACAACATA+TGG - chr2_2:18912429-18912448 None:intergenic 35.0%
GCAATAGCTAGTACTATTGT+GGG - chr2_2:18912515-18912534 None:intergenic 35.0%
AGCAATAGCTAGTACTATTG+TGG - chr2_2:18912516-18912535 None:intergenic 35.0%
! AATTTTAAACGGCGTTAACG+TGG + chr2_2:18912689-18912708 Msa0242600:intron 35.0%
AATGGGAAAGAAGGTGAAAT+GGG - chr2_2:18912719-18912738 None:intergenic 35.0%
AAATGGGAAAGAAGGTGAAA+TGG - chr2_2:18912720-18912739 None:intergenic 35.0%
! TTCACCTTCTTTCCCATTTT+TGG + chr2_2:18912721-18912740 Msa0242600:intron 35.0%
GGAAGATAGAAGAGAATATG+TGG - chr2_2:18912752-18912771 None:intergenic 35.0%
! AATCCTTTGGGTTTGAAGTT+GGG - chr2_2:18913055-18913074 None:intergenic 35.0%
! AAATCCTTTGGGTTTGAAGT+TGG - chr2_2:18913056-18913075 None:intergenic 35.0%
CACTTGATGTTGAAATCCTT+TGG - chr2_2:18913068-18913087 None:intergenic 35.0%
ATATAAGCTATGATGGCTTG+TGG + chr2_2:18913316-18913335 Msa0242600:intron 35.0%
AGGGTTTCATAAGGTGAAAT+GGG + chr2_2:18913427-18913446 Msa0242600:intron 35.0%
GACCCACATATTATGAGTTA+GGG + chr2_2:18913523-18913542 Msa0242600:intron 35.0%
GATCCCTAACTCATAATATG+TGG - chr2_2:18913529-18913548 None:intergenic 35.0%
TTCACATGTTTAAGGAGCAA+AGG - chr2_2:18913799-18913818 None:intergenic 35.0%
!! ATGCATGTAAAAAGCACTGT+TGG + chr2_2:18913930-18913949 Msa0242600:intron 35.0%
!! TGCATGTAAAAAGCACTGTT+GGG + chr2_2:18913931-18913950 Msa0242600:intron 35.0%
! GGTGTATTTTATGGCACTAA+TGG - chr2_2:18913964-18913983 None:intergenic 35.0%
!!! CGCACATTTTTTGTTTCCTA+GGG - chr2_2:18914033-18914052 None:intergenic 35.0%
!!! ACGCACATTTTTTGTTTCCT+AGG - chr2_2:18914034-18914053 None:intergenic 35.0%
TGATCAGTCAGTATTGTTTG+TGG - chr2_2:18914229-18914248 None:intergenic 35.0%
! TACTGACTGATCATAACACA+TGG + chr2_2:18914236-18914255 Msa0242600:CDS 35.0%
! CAAAAGGCATGTTTACTTTC+GGG - chr2_2:18914289-18914308 None:intergenic 35.0%
!! TGGAAGATTTTGAAGAAAGC+TGG + chr2_2:18914416-18914435 Msa0242600:CDS 35.0%
!! AAGATTTTGAAGAAAGCTGG+AGG + chr2_2:18914419-18914438 Msa0242600:CDS 35.0%
!! AGGCAAATGGTGGATAAATA+TGG + chr2_2:18914439-18914458 Msa0242600:CDS 35.0%
AAGAAATATCGCCTCAAGAA+TGG - chr2_2:18914523-18914542 None:intergenic 35.0%
!! GATGAAAACGTTAATGGACT+CGG - chr2_2:18914572-18914591 None:intergenic 35.0%
! CCATTAACGTTTTCATCCAA+CGG + chr2_2:18914575-18914594 Msa0242600:CDS 35.0%
!! ACTTGCTCTAAAAAACGTTC+TGG - chr2_2:18914622-18914641 None:intergenic 35.0%
!! TTTCCTGCAGCTTTGTTTAT+GGG + chr2_2:18914691-18914710 Msa0242600:intron 35.0%
TGCCTGAAAACTCAAATAGA+CGG - chr2_2:18915036-18915055 None:intergenic 35.0%
ATCAATATTTACCGATCCGA+TGG + chr2_2:18915113-18915132 Msa0242600:CDS 35.0%
GCCTGAAAGGATACAATATT+TGG + chr2_2:18915192-18915211 Msa0242600:CDS 35.0%
TCACCATTATGTGCACAATA+TGG + chr2_2:18915520-18915539 Msa0242600:CDS 35.0%
TGTCCATATTGTGCACATAA+TGG - chr2_2:18915526-18915545 None:intergenic 35.0%
TGGATCTGATTGCTCAATAA+TGG + chr2_2:18915549-18915568 Msa0242600:CDS 35.0%
CTTATGTATCGTTGAATTGG+AGG - chr2_2:18915699-18915718 None:intergenic 35.0%
! CTGAAATTTTTCCACAAGAG+TGG - chr2_2:18915729-18915748 None:intergenic 35.0%
CACTCTTGTGGAAAAATTTC+AGG + chr2_2:18915727-18915746 Msa0242600:three_prime_UTR 35.0%
!!! ACAATTCGGTTTTGAAGAGG+TGG - chr2_2:18910354-18910373 None:intergenic 40.0%
AGATCTGCTGCAACACAATT+CGG - chr2_2:18910368-18910387 None:intergenic 40.0%
AACCGAATTGGACATTGAAC+TGG + chr2_2:18910774-18910793 Msa0242600:intron 40.0%
CACCAGTTCAATGTCCAATT+CGG - chr2_2:18910779-18910798 None:intergenic 40.0%
AATTGGACATTGAACTGGTG+AGG + chr2_2:18910779-18910798 Msa0242600:intron 40.0%
AACCGAATAGTAGATAGTGC+CGG + chr2_2:18910864-18910883 Msa0242600:intron 40.0%
AACCGGCACTATCTACTATT+CGG - chr2_2:18910869-18910888 None:intergenic 40.0%
CAACCAGTTAAACCATGAAC+CGG - chr2_2:18910886-18910905 None:intergenic 40.0%
GTTTAACTGGTTGAACCATC+TGG + chr2_2:18910893-18910912 Msa0242600:intron 40.0%
AAAAGCTAAACCGAACCAGA+TGG - chr2_2:18910911-18910930 None:intergenic 40.0%
CACTTAAGTAGAACTCGTTG+AGG - chr2_2:18911012-18911031 None:intergenic 40.0%
CTCAACGAGTTCTACTTAAG+TGG + chr2_2:18911010-18911029 Msa0242600:intron 40.0%
ATCACGTGAGCTTAATCACT+TGG + chr2_2:18911042-18911061 Msa0242600:intron 40.0%
! CTAGACTTGCTTTGTCTCTT+TGG + chr2_2:18911186-18911205 Msa0242600:intron 40.0%
GATGTTCAAACCTGAAAGAC+GGG - chr2_2:18911381-18911400 None:intergenic 40.0%
AAATGGCACAGATTTGTCTC+AGG + chr2_2:18911474-18911493 Msa0242600:CDS 40.0%
GATTTGTCTCAGGATGACAT+TGG + chr2_2:18911484-18911503 Msa0242600:CDS 40.0%
AACCACAGCGAGATGATTTA+CGG - chr2_2:18911786-18911805 None:intergenic 40.0%
!! CAGATTTTGATGTCCCTGAA+TGG + chr2_2:18911836-18911855 Msa0242600:CDS 40.0%
TTGAATAAGACGCACCTCAT+TGG - chr2_2:18911908-18911927 None:intergenic 40.0%
CATATACGGCTCTTATCATC+AGG - chr2_2:18911949-18911968 None:intergenic 40.0%
! GTTTGCTAAAGCTGGAATGT+CGG + chr2_2:18911972-18911991 Msa0242600:CDS 40.0%
!! GTTGCAGTCTTTTAGAAACG+TGG + chr2_2:18912080-18912099 Msa0242600:CDS 40.0%
TGATTGAATTGATGAGCCGT+AGG - chr2_2:18912226-18912245 None:intergenic 40.0%
AATTCCCAACAGCATGTCAT+AGG - chr2_2:18912301-18912320 None:intergenic 40.0%
ATGACATGCTGTTGGGAATT+TGG + chr2_2:18912301-18912320 Msa0242600:CDS 40.0%
! TGGCTTGGATTGGACAATAA+TGG + chr2_2:18912321-18912340 Msa0242600:CDS 40.0%
ATGGGAAAGAAGGTGAAATG+GGG - chr2_2:18912718-18912737 None:intergenic 40.0%
TATAGATGAAGGGCCTAATG+TGG - chr2_2:18912782-18912801 None:intergenic 40.0%
!! CAGCTGAAACCTTTGAAATC+CGG - chr2_2:18913360-18913379 None:intergenic 40.0%
CAGGGTTTCATAAGGTGAAA+TGG + chr2_2:18913426-18913445 Msa0242600:intron 40.0%
GGGTTTCATAAGGTGAAATG+GGG + chr2_2:18913428-18913447 Msa0242600:intron 40.0%
CGACCCACATATTATGAGTT+AGG + chr2_2:18913522-18913541 Msa0242600:intron 40.0%
!! ATGCTACAGTAGAAGTGTCT+AGG + chr2_2:18913657-18913676 Msa0242600:intron 40.0%
!! ATGTCTTGGTTTGTGTGGAA+AGG + chr2_2:18913858-18913877 Msa0242600:intron 40.0%
!! GCATGTAAAAAGCACTGTTG+GGG + chr2_2:18913932-18913951 Msa0242600:intron 40.0%
!! AAAAAGCACTGTTGGGGTAT+CGG + chr2_2:18913938-18913957 Msa0242600:intron 40.0%
GAGTGAAGAGACTATTCTTC+CGG - chr2_2:18913985-18914004 None:intergenic 40.0%
TCACATTATGCAGGCTTTCT+TGG + chr2_2:18914183-18914202 Msa0242600:intron 40.0%
CACATTATGCAGGCTTTCTT+GGG + chr2_2:18914184-18914203 Msa0242600:intron 40.0%
TTCTCTCCAAGTTCTCTGAT+TGG + chr2_2:18914320-18914339 Msa0242600:CDS 40.0%
TTTCCAAATTGTAGAGCCGA+TGG - chr2_2:18914393-18914412 None:intergenic 40.0%
TCGGCTCTACAATTTGGAAA+TGG + chr2_2:18914393-18914412 Msa0242600:CDS 40.0%
GCTCTACAATTTGGAAATGG+TGG + chr2_2:18914396-18914415 Msa0242600:CDS 40.0%
TTGAGGCGATATTTCTTTGC+AGG + chr2_2:18914526-18914545 Msa0242600:CDS 40.0%
CCGTTGGATGAAAACGTTAA+TGG - chr2_2:18914578-18914597 None:intergenic 40.0%
!! CTTTCCTGCAGCTTTGTTTA+TGG + chr2_2:18914690-18914709 Msa0242600:intron 40.0%
ATACCCATAAACAAAGCTGC+AGG - chr2_2:18914697-18914716 None:intergenic 40.0%
!! GTTGATTTTAATGACCGAGC+CGG + chr2_2:18914761-18914780 Msa0242600:CDS 40.0%
! TTGCATCTTTTGCTTTGCTC+CGG - chr2_2:18914783-18914802 None:intergenic 40.0%
GAGCAAAGCAAAAGATGCAA+AGG + chr2_2:18914783-18914802 Msa0242600:CDS 40.0%
CAGAAAGTCTGCTTGAAAAC+AGG + chr2_2:18914812-18914831 Msa0242600:CDS 40.0%
AGTAAGTATAGTGGCAGCAT+GGG - chr2_2:18914852-18914871 None:intergenic 40.0%
GGCATAAGGAGTAAGTATAG+TGG - chr2_2:18914861-18914880 None:intergenic 40.0%
ACCTCAATATGCATCCTTTC+TGG + chr2_2:18914913-18914932 Msa0242600:CDS 40.0%
ACCAGAAAGGATGCATATTG+AGG - chr2_2:18914917-18914936 None:intergenic 40.0%
ACAACCTTCATCAACCAGAA+AGG - chr2_2:18914930-18914949 None:intergenic 40.0%
!!! GGTTGATGAAGGTTGTTTTC+AGG + chr2_2:18914934-18914953 Msa0242600:CDS 40.0%
AAACACTTTGCAACCTCCAT+CGG - chr2_2:18914978-18914997 None:intergenic 40.0%
!! ATGGAGGTTGCAAAGTGTTT+TGG + chr2_2:18914978-18914997 Msa0242600:CDS 40.0%
!! TGCCGTCTATTTGAGTTTTC+AGG + chr2_2:18915031-18915050 Msa0242600:CDS 40.0%
GGATCGGTAAATATTGATCC+GGG - chr2_2:18915111-18915130 None:intergenic 40.0%
CGGATCGGTAAATATTGATC+CGG - chr2_2:18915112-18915131 None:intergenic 40.0%
TGCTTGTGACCAAGTTTCAA+TGG + chr2_2:18915273-18915292 Msa0242600:CDS 40.0%
GTGATAGCACCATTGAAACT+TGG - chr2_2:18915285-18915304 None:intergenic 40.0%
TCATCAGTATCTTCTACCTC+TGG - chr2_2:18915385-18915404 None:intergenic 40.0%
TGCAAATCCTCATGATTCCA+TGG + chr2_2:18915426-18915445 Msa0242600:CDS 40.0%
TGTGCACAATATGGACATGA+TGG + chr2_2:18915529-18915548 Msa0242600:CDS 40.0%
TAAGTTGTCTACCACTCTTG+TGG + chr2_2:18915715-18915734 Msa0242600:three_prime_UTR 40.0%
AACGATTCCGACGCGATTTA+CGG + chr2_2:18910319-18910338 Msa0242600:five_prime_UTR 45.0%
!! TTTTGAAGAGGTGGCTATGG+CGG - chr2_2:18910345-18910364 None:intergenic 45.0%
ATTAAACTGGGACGACACTG+CGG + chr2_2:18910825-18910844 Msa0242600:intron 45.0%
!! TAGTAGATAGTGCCGGTTCA+TGG + chr2_2:18910871-18910890 Msa0242600:intron 45.0%
ACTGGTTGAACCATCTGGTT+CGG + chr2_2:18910898-18910917 Msa0242600:intron 45.0%
GAGCTAAGTAAAGTTGGCCA+AGG + chr2_2:18910954-18910973 Msa0242600:intron 45.0%
GAGAACCCGAGTTCAAATCT+TGG - chr2_2:18910990-18911009 None:intergenic 45.0%
TGAAAGACGGGCAATGAGAA+AGG - chr2_2:18911369-18911388 None:intergenic 45.0%
TTTCTCATTGCCCGTCTTTC+AGG + chr2_2:18911368-18911387 Msa0242600:intron 45.0%
ACTGACAGCAGAATGTCAGA+AGG + chr2_2:18911424-18911443 Msa0242600:exon 45.0%
!! TATTTTGGGGAAATCCTCCG+CGG - chr2_2:18911723-18911742 None:intergenic 45.0%
AACCGTAAATCATCTCGCTG+TGG + chr2_2:18911781-18911800 Msa0242600:CDS 45.0%
AACCAGTAACACGCCATTCA+GGG - chr2_2:18911852-18911871 None:intergenic 45.0%
AAACCAGTAACACGCCATTC+AGG - chr2_2:18911853-18911872 None:intergenic 45.0%
CTAAAGCTGGAATGTCGGTA+AGG + chr2_2:18911977-18911996 Msa0242600:CDS 45.0%
GAGTACATTGCATGGTCCTA+CGG + chr2_2:18912207-18912226 Msa0242600:CDS 45.0%
!! TGAGGTATTTGGTGATGCTG+TGG + chr2_2:18912248-18912267 Msa0242600:CDS 45.0%
TGATACAACCTACCGAGTAG+AGG + chr2_2:18912275-18912294 Msa0242600:CDS 45.0%
ATGCTGTTGGGAATTTGGCT+TGG + chr2_2:18912306-18912325 Msa0242600:CDS 45.0%
!! GTTGGGAATTTGGCTTGGAT+TGG + chr2_2:18912311-18912330 Msa0242600:CDS 45.0%
CATACTTTCATCCCGCAGAA+GGG - chr2_2:18912370-18912389 None:intergenic 45.0%
TGGCTGTTACGTGTCTGATA+TGG + chr2_2:18912662-18912681 Msa0242600:intron 45.0%
TCTTCCTCTACCACCACATT+AGG + chr2_2:18912766-18912785 Msa0242600:intron 45.0%
CAGTAGCATGCAATCAACCA+TGG + chr2_2:18912816-18912835 Msa0242600:intron 45.0%
CGAAGGAGAAGAACTCTTTG+GGG - chr2_2:18912844-18912863 None:intergenic 45.0%
GCGAAGGAGAAGAACTCTTT+GGG - chr2_2:18912845-18912864 None:intergenic 45.0%
CAAAGAGTTCTTCTCCTTCG+CGG + chr2_2:18912844-18912863 Msa0242600:intron 45.0%
! TTAGTGAGGGTGTGAGTGAA+GGG - chr2_2:18912916-18912935 None:intergenic 45.0%
! TTTAGTGAGGGTGTGAGTGA+AGG - chr2_2:18912917-18912936 None:intergenic 45.0%
GTACCCAACTTCAAACCCAA+AGG + chr2_2:18913049-18913068 Msa0242600:intron 45.0%
! TATGATGGCTTGTGGTTGCT+AGG + chr2_2:18913324-18913343 Msa0242600:intron 45.0%
! TGATGTGGACTAAACCGTGT+CGG - chr2_2:18913462-18913481 None:intergenic 45.0%
TGGCTGTTACAGATCTGATG+TGG - chr2_2:18913477-18913496 None:intergenic 45.0%
GAATCTAGTAGGCATTCCCT+AGG + chr2_2:18914014-18914033 Msa0242600:intron 45.0%
GCTTTCTTGGGCTTCATGAA+AGG + chr2_2:18914196-18914215 Msa0242600:CDS 45.0%
CTTGGGCTTCATGAAAGGAA+AGG + chr2_2:18914201-18914220 Msa0242600:CDS 45.0%
AGTGGAAAGCTGAGTTCCAT+CGG + chr2_2:18914374-18914393 Msa0242600:CDS 45.0%
!! GTTCCATCGGCTCTACAATT+TGG + chr2_2:18914387-18914406 Msa0242600:CDS 45.0%
TGAAGAAAGCTGGAGGCAAA+TGG + chr2_2:18914426-18914445 Msa0242600:CDS 45.0%
TCTGGGCTTTACCATTCTTG+AGG + chr2_2:18914509-18914528 Msa0242600:CDS 45.0%
ATTGTGCACTCAAGAACCGT+TGG - chr2_2:18914594-18914613 None:intergenic 45.0%
GAGTAAGTATAGTGGCAGCA+TGG - chr2_2:18914853-18914872 None:intergenic 45.0%
! TGGAGTTTGCTCAAGGCATA+AGG - chr2_2:18914875-18914894 None:intergenic 45.0%
TTATGCCTTGAGCAAACTCC+AGG + chr2_2:18914874-18914893 Msa0242600:CDS 45.0%
!! GCATCCTTTCTGGTTGATGA+AGG + chr2_2:18914923-18914942 Msa0242600:CDS 45.0%
TGCTAGTTGCGCCATGAAAA+TGG - chr2_2:18915165-18915184 None:intergenic 45.0%
! ATTTTCATGGCGCAACTAGC+AGG + chr2_2:18915164-18915183 Msa0242600:CDS 45.0%
! TTTTCATGGCGCAACTAGCA+GGG + chr2_2:18915165-18915184 Msa0242600:CDS 45.0%
CTTGGTCACAAGCAACATCA+AGG - chr2_2:18915267-18915286 None:intergenic 45.0%
CACGTGTTAAAACTCTTCCC+AGG + chr2_2:18915302-18915321 Msa0242600:CDS 45.0%
TTTACGCCATGTGATGACCT+GGG - chr2_2:18915322-18915341 None:intergenic 45.0%
ATTTACGCCATGTGATGACC+TGG - chr2_2:18915323-18915342 None:intergenic 45.0%
CCTAAAGCCATGGAATCATG+AGG - chr2_2:18915436-18915455 None:intergenic 45.0%
CCTCATGATTCCATGGCTTT+AGG + chr2_2:18915433-18915452 Msa0242600:CDS 45.0%
!! CTTTAGCTTGCCTAAAGCCA+TGG - chr2_2:18915446-18915465 None:intergenic 45.0%
!! CATGGCTTTAGGCAAGCTAA+AGG + chr2_2:18915444-18915463 Msa0242600:CDS 45.0%
TAGGCAAGCTAAAGGAGAGA+AGG + chr2_2:18915452-18915471 Msa0242600:CDS 45.0%
AGGCAAGCTAAAGGAGAGAA+GGG + chr2_2:18915453-18915472 Msa0242600:CDS 45.0%
TGACTCCAGCTTGACGATGA+TGG - chr2_2:18910276-18910295 None:intergenic 50.0%
AATCGCGTCGGAATCGTTTC+CGG - chr2_2:18910317-18910336 None:intergenic 50.0%
!!! CGGTTTTGAAGAGGTGGCTA+TGG - chr2_2:18910348-18910367 None:intergenic 50.0%
TTAAACTGGGACGACACTGC+GGG + chr2_2:18910826-18910845 Msa0242600:intron 50.0%
!! GTGCCGGTTCATGGTTTAAC+TGG + chr2_2:18910880-18910899 Msa0242600:intron 50.0%
TCTTGGTATGGAGTTTGGCC+AGG + chr2_2:18910932-18910951 Msa0242600:intron 50.0%
GGCCAGGAGCTAAGTAAAGT+TGG + chr2_2:18910948-18910967 Msa0242600:intron 50.0%
GGCCAACTTTACTTAGCTCC+TGG - chr2_2:18910953-18910972 None:intergenic 50.0%
AATCCCTCCTCGTTACTCCT+CGG - chr2_2:18911690-18911709 None:intergenic 50.0%
! AGGGATTTTACTTGCCACCG+CGG + chr2_2:18911703-18911722 Msa0242600:CDS 50.0%
! AAACCTTCTGAAGATGGGGG+AGG + chr2_2:18911742-18911761 Msa0242600:CDS 50.0%
ACAGGCTCGAGTACATTGCA+TGG + chr2_2:18912199-18912218 Msa0242600:CDS 50.0%
GCATGTCATAGGCCTCTACT+CGG - chr2_2:18912290-18912309 None:intergenic 50.0%
AGAGGCCTATGACATGCTGT+TGG + chr2_2:18912293-18912312 Msa0242600:CDS 50.0%
GAGGCCTATGACATGCTGTT+GGG + chr2_2:18912294-18912313 Msa0242600:CDS 50.0%
GCATACTTTCATCCCGCAGA+AGG - chr2_2:18912371-18912390 None:intergenic 50.0%
AGATGAAGGGCCTAATGTGG+TGG - chr2_2:18912779-18912798 None:intergenic 50.0%
! AAGAACTCTTTGGGGAGCCA+TGG - chr2_2:18912836-18912855 None:intergenic 50.0%
CGCGAAGGAGAAGAACTCTT+TGG - chr2_2:18912846-18912865 None:intergenic 50.0%
CTTGTGGTTGCTAGGAGGAA+TGG + chr2_2:18913332-18913351 Msa0242600:intron 50.0%
! GGAATGGTGCCGGATTTCAA+AGG + chr2_2:18913348-18913367 Msa0242600:intron 50.0%
TTGGGTCGCAATACGATGAG+TGG + chr2_2:18914356-18914375 Msa0242600:CDS 50.0%
AGAAAGCTGGAGGCAAATGG+TGG + chr2_2:18914429-18914448 Msa0242600:CDS 50.0%
! TCTTTTGCTTTGCTCCGGCT+CGG - chr2_2:18914778-18914797 None:intergenic 50.0%
GTGGCAGCATGGGATTCTAT+AGG - chr2_2:18914842-18914861 None:intergenic 50.0%
! CTCTTCCTGGAGTTTGCTCA+AGG - chr2_2:18914882-18914901 None:intergenic 50.0%
AGACACCATTCTCAGACCGA+TGG + chr2_2:18914959-18914978 Msa0242600:CDS 50.0%
AACCTCCATCGGTCTGAGAA+TGG - chr2_2:18914967-18914986 None:intergenic 50.0%
CAGCTGATGTGCTCTTGACA+AGG - chr2_2:18915007-18915026 None:intergenic 50.0%
ACAGACCAATGCTTCGCCAT+CGG - chr2_2:18915132-18915151 None:intergenic 50.0%
ACTCTTCCCAGGTCATCACA+TGG + chr2_2:18915313-18915332 Msa0242600:CDS 50.0%
GGATTCATTGATCCTGCCAG+AGG + chr2_2:18915366-18915385 Msa0242600:CDS 50.0%
CAGTATCTTCTACCTCTGGC+AGG - chr2_2:18915381-18915400 None:intergenic 50.0%
AAGGAGAGAAGGGCAAGAGA+TGG + chr2_2:18915463-18915482 Msa0242600:CDS 50.0%
CAGCTCCATCATCGTCAAGC+TGG + chr2_2:18910268-18910287 Msa0242600:five_prime_UTR 55.0%
ACACGCAGCAGTGAACTTCC+CGG + chr2_2:18910295-18910314 Msa0242600:five_prime_UTR 55.0%
ATCGCGTCGGAATCGTTTCC+GGG - chr2_2:18910316-18910335 None:intergenic 55.0%
GGATGACATTGGCACTGTCG+AGG + chr2_2:18911495-18911514 Msa0242600:CDS 55.0%
! GATTTTACTTGCCACCGCGG+AGG + chr2_2:18911706-18911725 Msa0242600:CDS 55.0%
GTCCCTGAATGGCGTGTTAC+TGG + chr2_2:18911847-18911866 Msa0242600:CDS 55.0%
GTCATAGGCCTCTACTCGGT+AGG - chr2_2:18912286-18912305 None:intergenic 55.0%
GCTTTAGTTGCGCCCTTCTG+CGG + chr2_2:18912355-18912374 Msa0242600:CDS 55.0%
CTTTAGTTGCGCCCTTCTGC+GGG + chr2_2:18912356-18912375 Msa0242600:CDS 55.0%
AGGGCCTAATGTGGTGGTAG+AGG - chr2_2:18912773-18912792 None:intergenic 55.0%
TCTCCTTCGCGGTGACAACA+TGG + chr2_2:18912855-18912874 Msa0242600:intron 55.0%
CTTCCATGTTGTCACCGCGA+AGG - chr2_2:18912861-18912880 None:intergenic 55.0%
CTTCGCGGTGACAACATGGA+AGG + chr2_2:18912859-18912878 Msa0242600:intron 55.0%
! AGGGTGTGAGTGAAGGGTGT+TGG - chr2_2:18912910-18912929 None:intergenic 55.0%
! GATGGCTTGTGGTTGCTAGG+AGG + chr2_2:18913327-18913346 Msa0242600:intron 55.0%
GTTGCTAGGAGGAATGGTGC+CGG + chr2_2:18913338-18913357 Msa0242600:intron 55.0%
GTGGAAAGGACCCGAGTCAT+CGG + chr2_2:18913872-18913891 Msa0242600:intron 55.0%
TGGAAAGGACCCGAGTCATC+GGG + chr2_2:18913873-18913892 Msa0242600:intron 55.0%
! GGACTCGGTCTGACATGTAC+TGG - chr2_2:18914557-18914576 None:intergenic 55.0%
! GTGCTGCAACTAGCTCTTCC+TGG - chr2_2:18914895-18914914 None:intergenic 55.0%
CACCATTCTCAGACCGATGG+AGG + chr2_2:18914962-18914981 Msa0242600:CDS 55.0%
CCAATGCTTCGCCATCGGAT+CGG - chr2_2:18915127-18915146 None:intergenic 55.0%
CTAGCAGGGATCAGCCTGAA+AGG + chr2_2:18915179-18915198 Msa0242600:CDS 55.0%
ATGGCGGCCGTAAATCGCGT+CGG - chr2_2:18910329-18910348 None:intergenic 60.0%
ATTAGACGACACCGCACCCG+AGG + chr2_2:18911649-18911668 Msa0242600:CDS 60.0%
TTAGACGACACCGCACCCGA+GGG + chr2_2:18911650-18911669 Msa0242600:CDS 60.0%
ACCGCACCCGAGGGAAAGAT+GGG + chr2_2:18911659-18911678 Msa0242600:CDS 60.0%
ACCCGAGGGAAAGATGGGGT+TGG + chr2_2:18911664-18911683 Msa0242600:CDS 60.0%
GCCAACCCCATCTTTCCCTC+GGG - chr2_2:18911668-18911687 None:intergenic 60.0%
GGCCAACCCCATCTTTCCCT+CGG - chr2_2:18911669-18911688 None:intergenic 60.0%
TTGGCCGAGGAGTAACGAGG+AGG + chr2_2:18911683-18911702 Msa0242600:CDS 60.0%
TGGCCGAGGAGTAACGAGGA+GGG + chr2_2:18911684-18911703 Msa0242600:CDS 60.0%
TTTGGGGAAATCCTCCGCGG+TGG - chr2_2:18911720-18911739 None:intergenic 60.0%
CCTCCTCCCCCATCTTCAGA+AGG - chr2_2:18911748-18911767 None:intergenic 60.0%
! CCTTCTGAAGATGGGGGAGG+AGG + chr2_2:18911745-18911764 Msa0242600:CDS 60.0%
! GGGGAGGAGGAAAAGCGCAA+AGG + chr2_2:18911758-18911777 Msa0242600:CDS 60.0%
! TGGACTAAACCGTGTCGGCG+TGG - chr2_2:18913457-18913476 None:intergenic 60.0%
GGAAAGGACCCGAGTCATCG+GGG + chr2_2:18913874-18913893 Msa0242600:intron 60.0%
ACCACATGCCCCGATGACTC+GGG - chr2_2:18913885-18913904 None:intergenic 60.0%
GACCACATGCCCCGATGACT+CGG - chr2_2:18913886-18913905 None:intergenic 60.0%
CCGATCCGATGGCGAAGCAT+TGG + chr2_2:18915124-18915143 Msa0242600:CDS 60.0%
CACCGCACCCGAGGGAAAGA+TGG + chr2_2:18911658-18911677 Msa0242600:CDS 65.0%
CCCCATCTTTCCCTCGGGTG+CGG - chr2_2:18911663-18911682 None:intergenic 65.0%
CCGCACCCGAGGGAAAGATG+GGG + chr2_2:18911660-18911679 Msa0242600:CDS 65.0%
!! GGGAAAGATGGGGTTGGCCG+AGG + chr2_2:18911670-18911689 Msa0242600:CDS 65.0%
!! GGGTTGGCCGAGGAGTAACG+AGG + chr2_2:18911680-18911699 Msa0242600:CDS 65.0%
ATGGGGAAGCCACGCCGACA+CGG + chr2_2:18913445-18913464 Msa0242600:intron 65.0%
ACCCGAGTCATCGGGGCATG+TGG + chr2_2:18913881-18913900 Msa0242600:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 18910257 18915798 18910257 ID=Msa0242600;Name=Msa0242600
chr2_2 mRNA 18910257 18915798 18910257 ID=Msa0242600-mRNA-1;Parent=Msa0242600;Name=Msa0242600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=223|1|1|1|0.66|0.5|4|186|761
chr2_2 exon 18910257 18910433 18910257 ID=Msa0242600-mRNA-1:exon:7715;Parent=Msa0242600-mRNA-1
chr2_2 exon 18911390 18912413 18911390 ID=Msa0242600-mRNA-1:exon:7716;Parent=Msa0242600-mRNA-1
chr2_2 exon 18914196 18914639 18914196 ID=Msa0242600-mRNA-1:exon:7717;Parent=Msa0242600-mRNA-1
chr2_2 exon 18914749 18915798 18914749 ID=Msa0242600-mRNA-1:exon:7718;Parent=Msa0242600-mRNA-1
chr2_2 five_prime_UTR 18910257 18910433 18910257 ID=Msa0242600-mRNA-1:five_prime_utr;Parent=Msa0242600-mRNA-1
chr2_2 five_prime_UTR 18911390 18911435 18911390 ID=Msa0242600-mRNA-1:five_prime_utr;Parent=Msa0242600-mRNA-1
chr2_2 CDS 18911436 18912413 18911436 ID=Msa0242600-mRNA-1:cds;Parent=Msa0242600-mRNA-1
chr2_2 CDS 18914196 18914639 18914196 ID=Msa0242600-mRNA-1:cds;Parent=Msa0242600-mRNA-1
chr2_2 CDS 18914749 18915612 18914749 ID=Msa0242600-mRNA-1:cds;Parent=Msa0242600-mRNA-1
chr2_2 three_prime_UTR 18915613 18915798 18915613 ID=Msa0242600-mRNA-1:three_prime_utr;Parent=Msa0242600-mRNA-1
Gene Sequence

>Msa0242600

ATGTCAGAAGGAGCCAGTTTTGTGTTAGAATCATCCGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACTGTCGAGGAAACACCAGAAGAAACAATTCTGTCAAGACAAACTTCTGTTAACCTTGTTCCTTTTATTGGTCAAAGATTTGTCTCTCAAGAAGCTGCTTATGAATTTTATTGCAGTTTTGCTAAACAATTTGGCTTTTCAATTAGACGACACCGCACCCGAGGGAAAGATGGGGTTGGCCGAGGAGTAACGAGGAGGGATTTTACTTGCCACCGCGGAGGATTTCCCCAAAATAAACCTTCTGAAGATGGGGGAGGAGGAAAAGCGCAAAGGAACCGTAAATCATCTCGCTGTGGTTGTCAAGCGTACATGCGTATTGTGAAAAAGGCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGAAACATCCACAATCATGAGTTGTTAAAATCCAATGAGGTGCGTCTTATTCAATCACACTGTCCGATATCTCCTGATGATAAGAGCCGTATATGCATGTTTGCTAAAGCTGGAATGTCGGTAAGGCAAATGTTAAGATTAATGGAGCTAGAAAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTGAGAAACTTGTTGCAGTCTTTTAGAAACGTGGATAAAGATAATGATGCTATTGATCTGATTGCAATGTGTAAGAGATTAAAAGATGAAAATCACAACTTCAAGTATGAATTCAAGATAGATAATAATAACAGGCTCGAGTACATTGCATGGTCCTACGGCTCATCAATTCAATCATATGAGGTATTTGGTGATGCTGTGGTTTTTGATACAACCTACCGAGTAGAGGCCTATGACATGCTGTTGGGAATTTGGCTTGGATTGGACAATAATGGAGTGATATGTTGCTTTAGTTGCGCCCTTCTGCGGGATGAAAGTATGCCGTCTTTTTCATGGGCTTTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAGGCTCCACAAACAATACTGACTGATCATAACACATGGCTGAAAGAAGCTATTGCTGTTGAAATGCCCGAAAGTAAACATGCCTTTTGTATATGGCATATTCTCTCCAAGTTCTCTGATTGGTTTTATTTACTTCTTGGGTCGCAATACGATGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAAATGGTGGAAGATTTTGAAGAAAGCTGGAGGCAAATGGTGGATAAATATGGACTTCATGCAAATAAACATATTATTAGCCTATACTCATTAAGGACATTCTGGGCTTTACCATTCTTGAGGCGATATTTCTTTGCAGGATTAACCAGTACATGTCAGACCGAGTCCATTAACGTTTTCATCCAACGGTTCTTGAGTGCACAATCTCAACCAGAACGTTTTTTAGAGCAAGTGGCTGATATTGTTGATTTTAATGACCGAGCCGGAGCAAAGCAAAAGATGCAAAGGAAAATGCAGAAAGTCTGCTTGAAAACAGGTTCACCTATAGAATCCCATGCTGCCACTATACTTACTCCTTATGCCTTGAGCAAACTCCAGGAAGAGCTAGTTGCAGCACCTCAATATGCATCCTTTCTGGTTGATGAAGGTTGTTTTCAGGTTAGACACCATTCTCAGACCGATGGAGGTTGCAAAGTGTTTTGGCTTCCTTGTCAAGAGCACATCAGCTGCAGCTGCCGTCTATTTGAGTTTTCAGGCATCTTATGTAAACATGTGCTACGCGTCATGTCAACTAATAACTGTTTTCACATCCCGGATCAATATTTACCGATCCGATGGCGAAGCATTGGTCTGTCTTCTTTTAACCATTTTCATGGCGCAACTAGCAGGGATCAGCCTGAAAGGATACAATATTTGGAATCTTTGGTTTCAACACTTCTAATGGAATCCGTTGAAACCGAGGAACGCCTTGATGTTGCTTGTGACCAAGTTTCAATGGTGCTATCACGTGTTAAAACTCTTCCCAGGTCATCACATGGCGTAAATGATCTTGCATTTAGTTATGCATCGGATTCATTGATCCTGCCAGAGGTAGAAGATACTGATGAAATGATTCATGGTTTTACAATTGCAAATCCTCATGATTCCATGGCTTTAGGCAAGCTAAAGGAGAGAAGGGCAAGAGATGGAGTTGATATTAGTAGAAAACGTAGGCAGTTCTCATCACCATTATGTGCACAATATGGACATGATGGATCTGATTGCTCAATAATGGCTGATGATAATATGAGTGAAGATGCATTAGGGTATATGTAG
Protein sequence

>Msa0242600

MSEGASFVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQFGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQNKPSEDGGGGKAQRNRKSSRCGCQAYMRIVKKADFDVPEWRVTGFRNIHNHELLKSNEVRLIQSHCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDKDNDAIDLIAMCKRLKDENHNFKYEFKIDNNNRLEYIAWSYGSSIQSYEVFGDAVVFDTTYRVEAYDMLLGIWLGLDNNGVICCFSCALLRDESMPSFSWALKAFLGFMKGKAPQTILTDHNTWLKEAIAVEMPESKHAFCIWHILSKFSDWFYLLLGSQYDEWKAEFHRLYNLEMVEDFEESWRQMVDKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSTCQTESINVFIQRFLSAQSQPERFLEQVADIVDFNDRAGAKQKMQRKMQKVCLKTGSPIESHAATILTPYALSKLQEELVAAPQYASFLVDEGCFQVRHHSQTDGGCKVFWLPCQEHISCSCRLFEFSGILCKHVLRVMSTNNCFHIPDQYLPIRWRSIGLSSFNHFHGATSRDQPERIQYLESLVSTLLMESVETEERLDVACDQVSMVLSRVKTLPRSSHGVNDLAFSYASDSLILPEVEDTDEMIHGFTIANPHDSMALGKLKERRARDGVDISRKRRQFSSPLCAQYGHDGSDCSIMADDNMSEDALGYM*