AlfalfaGEDB | Msa0243850

M. sativa cultivar zhongmu-4 / Msa0243850

KEGG: -
GO: -
PFAM: PF04640.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243850	XP_039686395.1	98.062	258	3	1	1	256	1	258	0.0	523

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243850	sp\|Q1G3Q4\|RITF1_ARATH	40.310	258	119	4	30	255	1	255	6.65e-54	177

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243850	A0A396J5D9	98.062	258	3	1	1	256	1	258	0.0	523

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0243850	TF	PLATZ

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0201110	Msa0243850	0.946501	4.096295e-105	-8.615850e-47
Msa0243850	Msa0282480	0.930022	2.996251e-93	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243850	MtrunA17_Chr2g0297251	98.062	258	3	1	1	256	1	258	0.0	523
Msa0243850	MtrunA17_Chr4g0065041	45.098	255	109	6	28	255	1	251	2.96e-62	196
Msa0243850	MtrunA17_Chr7g0230511	43.388	242	118	5	32	255	6	246	3.38e-58	185
Msa0243850	MtrunA17_Chr4g0040071	35.526	228	106	6	35	255	15	208	3.14e-39	135
Msa0243850	MtrunA17_Chr5g0395181	33.778	225	109	4	35	256	21	208	3.27e-38	133
Msa0243850	MtrunA17_Chr5g0411151	33.617	235	111	5	32	256	32	231	5.27e-37	130
Msa0243850	MtrunA17_Chr8g0366581	44.615	130	71	1	32	160	30	159	2.84e-36	128
Msa0243850	MtrunA17_Chr1g0179781	33.628	226	120	5	33	256	5	202	4.69e-36	127
Msa0243850	MtrunA17_Chr4g0052451	72.619	84	17	1	85	162	10	93	5.07e-36	123
Msa0243850	MtrunA17_Chr7g0265291	34.498	229	115	5	33	256	5	203	1.02e-34	124

Showing 1 to 10 of 20 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243850	AT1G31040.1	61.905	231	75	5	34	256	18	243	2.58e-96	282
Msa0243850	AT3G60670.1	42.437	238	120	3	35	255	7	244	2.71e-57	183
Msa0243850	AT2G12646.3	40.392	255	117	4	33	255	1	252	1.02e-55	179
Msa0243850	AT2G12646.1	40.310	258	119	4	30	255	1	255	6.76e-55	177
Msa0243850	AT2G12646.2	40.310	258	119	4	30	255	1	255	6.76e-55	177
Msa0243850	AT1G43000.2	35.242	227	126	5	33	255	14	223	5.72e-37	130
Msa0243850	AT1G43000.1	35.242	227	126	5	33	255	7	216	6.54e-37	130
Msa0243850	AT1G21000.2	34.298	242	127	6	35	255	13	243	2.98e-36	129
Msa0243850	AT1G21000.1	34.298	242	127	6	35	255	16	246	3.61e-36	129
Msa0243850	AT2G01818.1	48.148	135	60	3	36	160	12	146	7.27e-35	125

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Find 69 sgRNAs with CRISPR-Local

Find 634 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTCTTTGGTGATTGT+GGG	0.470651	2_2:-21350927	Msa0243850:CDS
AAATCCAACAGATTCCTCCC+TGG	0.630961	2_2:-21339616	Msa0243850:CDS
AACATTCTTTGGTGATTGTG+GGG	0.611739	2_2:-21350926	Msa0243850:CDS
AAGAAAAGGTGCTCCTCAAA+GGG	0.524805	2_2:-21339569	Msa0243850:CDS
AAGCATGAGAAGATAAGCAG+TGG	0.608759	2_2:+21350836	None:intergenic
AATAATGGTTTAGGATAGTG+GGG	0.654932	2_2:+21339546	None:intergenic
AATAGTAATAGTAGTAATAA+TGG	0.299404	2_2:+21339531	None:intergenic
AATAGTAGTAATAATGGTTT+AGG	0.344553	2_2:+21339537	None:intergenic
AATATATATTATTAATTATT+TGG	0.104291	2_2:-21339475	Msa0243850:three_prime_UTR
AATGCCAGGGAGGAATCTGT+TGG	0.577735	2_2:+21339612	None:intergenic

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCATCATCATCATCAAG+AGG	-	chr2_2:21339490-21339509	Msa0243850:three_prime_UTR	30.0%
TAATATAATACCTGGAGAAG+AGG	+	chr2_2:21339700-21339719	None:intergenic	30.0%
AATCAATTGAAGTTGACAAG+GGG	+	chr2_2:21339892-21339911	None:intergenic	30.0%
AATTGAAAAGTTTCACGTGA+TGG	-	chr2_2:21339919-21339938	Msa0243850:intron	30.0%
GATGGATATTTGGAAATTCT+TGG	-	chr2_2:21340035-21340054	Msa0243850:intron	30.0%
GAAATTGTTGGGGTTTAATT+TGG	-	chr2_2:21340546-21340565	Msa0243850:intron	30.0%
TTACAGAAGAGAAAATTGCA+TGG	+	chr2_2:21340573-21340592	None:intergenic	30.0%
TCCACAATTATGCCAATTAA+TGG	-	chr2_2:21340597-21340616	Msa0243850:intron	30.0%
CCACAATTATGCCAATTAAT+GGG	-	chr2_2:21340598-21340617	Msa0243850:intron	30.0%
CACAATTATGCCAATTAATG+GGG	-	chr2_2:21340599-21340618	Msa0243850:intron	30.0%

Showing 1 to 10 of 634 entries

Previous1 2 3 4 5…64Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	21339419	21351108	21339419	ID=Msa0243850;Name=Msa0243850
chr2_2	mRNA	21339419	21351108	21339419	ID=Msa0243850-mRNA-1;Parent=Msa0243850;Name=Msa0243850-mRNA-1;_AED=0.09;_eAED=0.09;_QI=29\|1\|1\|1\|0.66\|0.75\|4\|136\|256
chr2_2	exon	21339419	21339848	21339419	ID=Msa0243850-mRNA-1:exon:8485;Parent=Msa0243850-mRNA-1
chr2_2	exon	21345897	21346037	21345897	ID=Msa0243850-mRNA-1:exon:8484;Parent=Msa0243850-mRNA-1
chr2_2	exon	21346417	21346491	21346417	ID=Msa0243850-mRNA-1:exon:8483;Parent=Msa0243850-mRNA-1
chr2_2	exon	21350819	21351108	21350819	ID=Msa0243850-mRNA-1:exon:8482;Parent=Msa0243850-mRNA-1
chr2_2	five_prime_UTR	21351080	21351108	21351080	ID=Msa0243850-mRNA-1:five_prime_utr;Parent=Msa0243850-mRNA-1
chr2_2	CDS	21350819	21351079	21350819	ID=Msa0243850-mRNA-1:cds;Parent=Msa0243850-mRNA-1
chr2_2	CDS	21346417	21346491	21346417	ID=Msa0243850-mRNA-1:cds;Parent=Msa0243850-mRNA-1
chr2_2	CDS	21345897	21346037	21345897	ID=Msa0243850-mRNA-1:cds;Parent=Msa0243850-mRNA-1
chr2_2	CDS	21339555	21339848	21339555	ID=Msa0243850-mRNA-1:cds;Parent=Msa0243850-mRNA-1
chr2_2	three_prime_UTR	21339419	21339554	21339419	ID=Msa0243850-mRNA-1:three_prime_utr;Parent=Msa0243850-mRNA-1

Gene Sequence

>Msa0243850

ATGGTGAGAGACATGATGATGGGAACTAGTACATATAACTCAATTTCATCATCATCATCAAGAGGAGACATGGACATGGACATGAGTATGATGAATATGAAACCTGCATGGCTAGAGAGGTTGATGGATGAAACATTCTTTGGTGATTGTGGGGTCCACAAGAATCGAAGGAAGAACGAGAAGAACATTTTTTGCTTACACTGTTGTCTTAGCATCTGCCCCCACTGCTTATCTTCTCATGCTTCTCATCCTCTTCTCCAGGTGAGAAGGTATGTTTACAACAACGTAATTCGATTGGATGATCTGGAAAAGCTCATTGATTGTTCTAATATACAGCCCTATACTATTAACAGTGCAAAAGTGATATTTTTAAATCAGAGGCCACAATCAAAGTCATGCAAAGTTACAACCAATGCTTGCTTCACTTGTGACAGGATTCTTCAGGACCCATTCCATTTCTGTTCTCTCTCATGCAAGGTGGATTTCATGGTATACGAGGGTCAAAGTTTGTCCAACATTTTACATCGATTTGATGAATCTGACTTAGGAATATCGCAATTCGAGGGACTAAGAATGGATGGATCTGAGGTAATTGATGAAGATAACAACCACATTGGCCCAAGTTCTTCTAATTACTCCATCACTCACCAAGAAGAGGCCACCAGCAACAAAATCACCAAGAAGAACAAATCCAACAGATTCCTCCCTGGCATTGTCCTCTCTCTTGGAAGCAGAAGAAAAGGTGCTCCTCAAAGGGCCCCACTATCCTAA

Protein sequence

>Msa0243850

MVRDMMMGTSTYNSISSSSSRGDMDMDMSMMNMKPAWLERLMDETFFGDCGVHKNRRKNEKNIFCLHCCLSICPHCLSSHASHPLLQVRRYVYNNVIRLDDLEKLIDCSNIQPYTINSAKVIFLNQRPQSKSCKVTTNACFTCDRILQDPFHFCSLSCKVDFMVYEGQSLSNILHRFDESDLGISQFEGLRMDGSEVIDEDNNHIGPSSSNYSITHQEEATSNKITKKNKSNRFLPGIVLSLGSRRKGAPQRAPLS*