Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0244130 | Msa0244140 | 0.847198 | 1.345498e-59 | -8.615850e-47 |
| Msa0244130 | Msa0244180 | 0.934794 | 2.322972e-96 | -8.615850e-47 |
| Msa0244130 | Msa0244190 | 0.824495 | 7.826358e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 7 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTCTTCTTCTATGAAA+TGG | 0.340832 | 2_2:+22291643 | Msa0244130:CDS |
| GTGTTGATTCTACTATGAAA+TGG | 0.381479 | 2_2:+22293578 | Msa0244130:CDS |
| TTGTCTGATGATGTGTAAAA+AGG | 0.386614 | 2_2:-22293511 | None:intergenic |
| TGTTGATTCTACTATGAAAT+GGG | 0.403303 | 2_2:+22293579 | Msa0244130:CDS |
| TGGACTGTAGCAGAATTTGT+AGG | 0.525330 | 2_2:+22291663 | Msa0244130:CDS |
| TGGGGAGTAACAGAATCTGT+AGG | 0.639252 | 2_2:+22293598 | Msa0244130:CDS |
| GTTGATTCTACTATGAAATG+GGG | 0.643497 | 2_2:+22293580 | Msa0244130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTAAAAATATATTATGTTT+TGG | - | chr2_2:22292795-22292814 | None:intergenic | 10.0% |
| !!! | TTTTAAAGATATTAACTTTT+TGG | - | chr2_2:22292837-22292856 | None:intergenic | 10.0% |
| !!! | ATAAAAGTATAAATATATGA+AGG | + | chr2_2:22292856-22292875 | Msa0244130:intron | 10.0% |
| !!! | AGTAAATTTGTTTTTTTTTT+AGG | + | chr2_2:22293025-22293044 | Msa0244130:intron | 10.0% |
| !! | TATAAAATAATACTGAAAAT+TGG | + | chr2_2:22293092-22293111 | Msa0244130:intron | 10.0% |
| !!! | CTTAAAAATATATTATGTTT+TGG | - | chr2_2:22292795-22292814 | None:intergenic | 10.0% |
| !!! | TTTTAAAGATATTAACTTTT+TGG | - | chr2_2:22292837-22292856 | None:intergenic | 10.0% |
| !!! | ATAAAAGTATAAATATATGA+AGG | + | chr2_2:22292856-22292875 | Msa0244130:intron | 10.0% |
| !!! | AGTAAATTTGTTTTTTTTTT+AGG | + | chr2_2:22293025-22293044 | Msa0244130:intron | 10.0% |
| !! | TATAAAATAATACTGAAAAT+TGG | + | chr2_2:22293092-22293111 | Msa0244130:intron | 10.0% |
| !!! | TTTTTTTTTTTACTAAGTCA+AGG | - | chr2_2:22291364-22291383 | None:intergenic | 15.0% |
| !! | TTTAATATGTAACACATTTA+TGG | + | chr2_2:22291390-22291409 | Msa0244130:intron | 15.0% |
| !! | AAACAATTGATATATTTACA+AGG | - | chr2_2:22291813-22291832 | None:intergenic | 15.0% |
| !!! | ATTTTCTTCAATTAAAGTAA+CGG | + | chr2_2:22292056-22292075 | Msa0244130:intron | 15.0% |
| !! | ATATGAACTTATAAAGTATA+AGG | + | chr2_2:22292217-22292236 | Msa0244130:intron | 15.0% |
| !! | TATGAACTTATAAAGTATAA+GGG | + | chr2_2:22292218-22292237 | Msa0244130:intron | 15.0% |
| !!! | TACCAATTTTTTTTATGATA+TGG | + | chr2_2:22292321-22292340 | Msa0244130:intron | 15.0% |
| !! | TCTTATAGAAATGATATTTA+TGG | - | chr2_2:22292358-22292377 | None:intergenic | 15.0% |
| !!! | TCAGTATTATTTTATATGTA+AGG | - | chr2_2:22293088-22293107 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTACTAAGTCA+AGG | - | chr2_2:22291364-22291383 | None:intergenic | 15.0% |
| !! | TTTAATATGTAACACATTTA+TGG | + | chr2_2:22291390-22291409 | Msa0244130:intron | 15.0% |
| !! | AAACAATTGATATATTTACA+AGG | - | chr2_2:22291813-22291832 | None:intergenic | 15.0% |
| !!! | ATTTTCTTCAATTAAAGTAA+CGG | + | chr2_2:22292056-22292075 | Msa0244130:intron | 15.0% |
| !! | ATATGAACTTATAAAGTATA+AGG | + | chr2_2:22292217-22292236 | Msa0244130:intron | 15.0% |
| !! | TATGAACTTATAAAGTATAA+GGG | + | chr2_2:22292218-22292237 | Msa0244130:intron | 15.0% |
| !!! | TACCAATTTTTTTTATGATA+TGG | + | chr2_2:22292321-22292340 | Msa0244130:intron | 15.0% |
| !! | TCTTATAGAAATGATATTTA+TGG | - | chr2_2:22292358-22292377 | None:intergenic | 15.0% |
| !!! | TCAGTATTATTTTATATGTA+AGG | - | chr2_2:22293088-22293107 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTAAGCTTTGTAA+AGG | - | chr2_2:22291539-22291558 | None:intergenic | 20.0% |
| !!! | AAACATATTTAAAGCTTAGT+AGG | - | chr2_2:22291749-22291768 | None:intergenic | 20.0% |
| !!! | TGTTTATTTTAAGTTCTGTT+TGG | + | chr2_2:22291828-22291847 | Msa0244130:intron | 20.0% |
| !!! | TAGTTGATAAATTAGCTTAT+AGG | + | chr2_2:22291868-22291887 | Msa0244130:intron | 20.0% |
| !!! | ATCATTTTTTCTTCCAATTT+TGG | - | chr2_2:22292084-22292103 | None:intergenic | 20.0% |
| !! | TACACATATTGAAATATAGT+GGG | - | chr2_2:22292397-22292416 | None:intergenic | 20.0% |
| !! | ATACACATATTGAAATATAG+TGG | - | chr2_2:22292398-22292417 | None:intergenic | 20.0% |
| !! | CAAATTTACTCATAAACTAT+CGG | - | chr2_2:22293015-22293034 | None:intergenic | 20.0% |
| !! | TTTAGTATGTATCACATTTA+TGG | + | chr2_2:22293323-22293342 | Msa0244130:intron | 20.0% |
| !! | TTATTAGTCCATAAATTCAA+TGG | - | chr2_2:22293349-22293368 | None:intergenic | 20.0% |
| !!! | TTATGGACTAATAATTTCTT+AGG | + | chr2_2:22293355-22293374 | Msa0244130:intron | 20.0% |
| !!! | TTTTTCTTTAAGCTTTGTAA+AGG | - | chr2_2:22291539-22291558 | None:intergenic | 20.0% |
| !!! | AAACATATTTAAAGCTTAGT+AGG | - | chr2_2:22291749-22291768 | None:intergenic | 20.0% |
| !!! | TGTTTATTTTAAGTTCTGTT+TGG | + | chr2_2:22291828-22291847 | Msa0244130:intron | 20.0% |
| !!! | TAGTTGATAAATTAGCTTAT+AGG | + | chr2_2:22291868-22291887 | Msa0244130:intron | 20.0% |
| !!! | ATCATTTTTTCTTCCAATTT+TGG | - | chr2_2:22292084-22292103 | None:intergenic | 20.0% |
| !! | TACACATATTGAAATATAGT+GGG | - | chr2_2:22292397-22292416 | None:intergenic | 20.0% |
| !! | ATACACATATTGAAATATAG+TGG | - | chr2_2:22292398-22292417 | None:intergenic | 20.0% |
| !! | CAAATTTACTCATAAACTAT+CGG | - | chr2_2:22293015-22293034 | None:intergenic | 20.0% |
| !! | TTTAGTATGTATCACATTTA+TGG | + | chr2_2:22293323-22293342 | Msa0244130:intron | 20.0% |
| !! | TTATTAGTCCATAAATTCAA+TGG | - | chr2_2:22293349-22293368 | None:intergenic | 20.0% |
| !!! | TTATGGACTAATAATTTCTT+AGG | + | chr2_2:22293355-22293374 | Msa0244130:intron | 20.0% |
| ! | TGTTTCATGCTAAAAAGATT+AGG | + | chr2_2:22291217-22291236 | Msa0244130:intron | 25.0% |
| !! | AAAATCCAAATCTTTTCTGA+AGG | - | chr2_2:22291271-22291290 | None:intergenic | 25.0% |
| !! | TTCAGAAAAGATTTGGATTT+TGG | + | chr2_2:22291270-22291289 | Msa0244130:intron | 25.0% |
| ! | TTATTAGTCCATCAATTCAA+TGG | - | chr2_2:22291416-22291435 | None:intergenic | 25.0% |
| !!! | TGATGGACTAATAATTTCTT+TGG | + | chr2_2:22291422-22291441 | Msa0244130:intron | 25.0% |
| ! | TTGATTCTTCTTCTATGAAA+TGG | + | chr2_2:22291643-22291662 | Msa0244130:CDS | 25.0% |
| ! | CCAAGAATATATACATGAAA+AGG | - | chr2_2:22291718-22291737 | None:intergenic | 25.0% |
| !! | CCTTTTCATGTATATATTCT+TGG | + | chr2_2:22291715-22291734 | Msa0244130:intron | 25.0% |
| ! | TTCAAGTAGCTTAAATCTAA+TGG | - | chr2_2:22292110-22292129 | None:intergenic | 25.0% |
| !!! | ATGACTAAAAAGTACTTGTT+TGG | - | chr2_2:22292199-22292218 | None:intergenic | 25.0% |
| ! | GGCCATATCATAAAAAAAAT+TGG | - | chr2_2:22292326-22292345 | None:intergenic | 25.0% |
| ! | AGTAGAAAAAAATAAGATCG+TGG | + | chr2_2:22292630-22292649 | Msa0244130:intron | 25.0% |
| ! | GTTTCATGCTAAAGAAAATT+AGG | + | chr2_2:22293156-22293175 | Msa0244130:intron | 25.0% |
| ! | ATTTATGGCCATTGAATTTA+TGG | + | chr2_2:22293338-22293357 | Msa0244130:intron | 25.0% |
| ! | AGTTTATTATAGTTGGGATT+TGG | - | chr2_2:22293444-22293463 | None:intergenic | 25.0% |
| ! | CTGTAGAGTTTATTATAGTT+GGG | - | chr2_2:22293450-22293469 | None:intergenic | 25.0% |
| !!! | TGTTGATTCTACTATGAAAT+GGG | + | chr2_2:22293579-22293598 | Msa0244130:CDS | 25.0% |
| ! | TGTTTCATGCTAAAAAGATT+AGG | + | chr2_2:22291217-22291236 | Msa0244130:intron | 25.0% |
| !! | AAAATCCAAATCTTTTCTGA+AGG | - | chr2_2:22291271-22291290 | None:intergenic | 25.0% |
| !! | TTCAGAAAAGATTTGGATTT+TGG | + | chr2_2:22291270-22291289 | Msa0244130:intron | 25.0% |
| ! | TTATTAGTCCATCAATTCAA+TGG | - | chr2_2:22291416-22291435 | None:intergenic | 25.0% |
| !!! | TGATGGACTAATAATTTCTT+TGG | + | chr2_2:22291422-22291441 | Msa0244130:intron | 25.0% |
| ! | TTGATTCTTCTTCTATGAAA+TGG | + | chr2_2:22291643-22291662 | Msa0244130:CDS | 25.0% |
| ! | CCAAGAATATATACATGAAA+AGG | - | chr2_2:22291718-22291737 | None:intergenic | 25.0% |
| !! | CCTTTTCATGTATATATTCT+TGG | + | chr2_2:22291715-22291734 | Msa0244130:intron | 25.0% |
| ! | TTCAAGTAGCTTAAATCTAA+TGG | - | chr2_2:22292110-22292129 | None:intergenic | 25.0% |
| !!! | ATGACTAAAAAGTACTTGTT+TGG | - | chr2_2:22292199-22292218 | None:intergenic | 25.0% |
| ! | GGCCATATCATAAAAAAAAT+TGG | - | chr2_2:22292326-22292345 | None:intergenic | 25.0% |
| ! | AGTAGAAAAAAATAAGATCG+TGG | + | chr2_2:22292630-22292649 | Msa0244130:intron | 25.0% |
| ! | GTTTCATGCTAAAGAAAATT+AGG | + | chr2_2:22293156-22293175 | Msa0244130:intron | 25.0% |
| ! | ATTTATGGCCATTGAATTTA+TGG | + | chr2_2:22293338-22293357 | Msa0244130:intron | 25.0% |
| ! | AGTTTATTATAGTTGGGATT+TGG | - | chr2_2:22293444-22293463 | None:intergenic | 25.0% |
| ! | CTGTAGAGTTTATTATAGTT+GGG | - | chr2_2:22293450-22293469 | None:intergenic | 25.0% |
| !!! | TGTTGATTCTACTATGAAAT+GGG | + | chr2_2:22293579-22293598 | Msa0244130:CDS | 25.0% |
| ATTTATGGCCATTGAATTGA+TGG | + | chr2_2:22291405-22291424 | Msa0244130:intron | 30.0% | |
| TAGAGTTTATAGTTGGGATT+AGG | - | chr2_2:22291508-22291527 | None:intergenic | 30.0% | |
| ATTGTCTGATGAAGTGTAAA+AGG | - | chr2_2:22291577-22291596 | None:intergenic | 30.0% | |
| TTGATTGAGTTTGCAGTATT+CGG | + | chr2_2:22291965-22291984 | Msa0244130:intron | 30.0% | |
| TAAAGTAACGGTTCCAAAAT+TGG | + | chr2_2:22292068-22292087 | Msa0244130:intron | 30.0% | |
| AAAATGTGAGAGAAATTCGA+AGG | - | chr2_2:22292297-22292316 | None:intergenic | 30.0% | |
| ! | CATATTGAAATATAGTGGGA+TGG | - | chr2_2:22292393-22292412 | None:intergenic | 30.0% |
| CCTAAAAGAGTTCAACTTTA+CGG | - | chr2_2:22292465-22292484 | None:intergenic | 30.0% | |
| ! | CGTAAAGTTGAACTCTTTTA+GGG | + | chr2_2:22292463-22292482 | Msa0244130:intron | 30.0% |
| ATGAAAGAGAAATAGAGAGA+TGG | + | chr2_2:22292653-22292672 | Msa0244130:intron | 30.0% | |
| CAACAAAGTTAAGATGATGA+AGG | + | chr2_2:22293246-22293265 | Msa0244130:intron | 30.0% | |
| ! | TTTTACTAAGTCAAGGTTCT+AGG | - | chr2_2:22293296-22293315 | None:intergenic | 30.0% |
| GCTGTAGAGTTTATTATAGT+TGG | - | chr2_2:22293451-22293470 | None:intergenic | 30.0% | |
| ! | CTTTAAGCTTTTTACTGGAA+AGG | - | chr2_2:22293473-22293492 | None:intergenic | 30.0% |
| TCCAGTAAAAAGCTTAAAGA+AGG | + | chr2_2:22293474-22293493 | Msa0244130:intron | 30.0% | |
| ! | TCCTTCTTTAAGCTTTTTAC+TGG | - | chr2_2:22293478-22293497 | None:intergenic | 30.0% |
| ! | TTGTCTGATGATGTGTAAAA+AGG | - | chr2_2:22293514-22293533 | None:intergenic | 30.0% |
| !! | ATCAGACAATTTTGATACAC+AGG | + | chr2_2:22291587-22291606 | Msa0244130:intron | 30.0% |
| !! | GTGTTGATTCTACTATGAAA+TGG | + | chr2_2:22293578-22293597 | Msa0244130:CDS | 30.0% |
| ! | GTTGATTCTACTATGAAATG+GGG | + | chr2_2:22293580-22293599 | Msa0244130:CDS | 30.0% |
| ATTTATGGCCATTGAATTGA+TGG | + | chr2_2:22291405-22291424 | Msa0244130:intron | 30.0% | |
| TAGAGTTTATAGTTGGGATT+AGG | - | chr2_2:22291508-22291527 | None:intergenic | 30.0% | |
| ATTGTCTGATGAAGTGTAAA+AGG | - | chr2_2:22291577-22291596 | None:intergenic | 30.0% | |
| TTGATTGAGTTTGCAGTATT+CGG | + | chr2_2:22291965-22291984 | Msa0244130:intron | 30.0% | |
| TAAAGTAACGGTTCCAAAAT+TGG | + | chr2_2:22292068-22292087 | Msa0244130:intron | 30.0% | |
| AAAATGTGAGAGAAATTCGA+AGG | - | chr2_2:22292297-22292316 | None:intergenic | 30.0% | |
| ! | CATATTGAAATATAGTGGGA+TGG | - | chr2_2:22292393-22292412 | None:intergenic | 30.0% |
| CCTAAAAGAGTTCAACTTTA+CGG | - | chr2_2:22292465-22292484 | None:intergenic | 30.0% | |
| ! | CGTAAAGTTGAACTCTTTTA+GGG | + | chr2_2:22292463-22292482 | Msa0244130:intron | 30.0% |
| ATGAAAGAGAAATAGAGAGA+TGG | + | chr2_2:22292653-22292672 | Msa0244130:intron | 30.0% | |
| CAACAAAGTTAAGATGATGA+AGG | + | chr2_2:22293246-22293265 | Msa0244130:intron | 30.0% | |
| ! | TTTTACTAAGTCAAGGTTCT+AGG | - | chr2_2:22293296-22293315 | None:intergenic | 30.0% |
| GCTGTAGAGTTTATTATAGT+TGG | - | chr2_2:22293451-22293470 | None:intergenic | 30.0% | |
| ! | CTTTAAGCTTTTTACTGGAA+AGG | - | chr2_2:22293473-22293492 | None:intergenic | 30.0% |
| TCCAGTAAAAAGCTTAAAGA+AGG | + | chr2_2:22293474-22293493 | Msa0244130:intron | 30.0% | |
| ! | TCCTTCTTTAAGCTTTTTAC+TGG | - | chr2_2:22293478-22293497 | None:intergenic | 30.0% |
| ! | TTGTCTGATGATGTGTAAAA+AGG | - | chr2_2:22293514-22293533 | None:intergenic | 30.0% |
| !! | ATCAGACAATTTTGATACAC+AGG | + | chr2_2:22291587-22291606 | Msa0244130:intron | 30.0% |
| !! | GTGTTGATTCTACTATGAAA+TGG | + | chr2_2:22293578-22293597 | Msa0244130:CDS | 30.0% |
| ! | GTTGATTCTACTATGAAATG+GGG | + | chr2_2:22293580-22293599 | Msa0244130:CDS | 30.0% |
| ACCTTCCTTCAGAAAAGATT+TGG | + | chr2_2:22291263-22291282 | Msa0244130:intron | 35.0% | |
| !! | TCCAAATCTTTTCTGAAGGA+AGG | - | chr2_2:22291267-22291286 | None:intergenic | 35.0% |
| ! | TTTTACTAAGTCAAGGCTCT+GGG | - | chr2_2:22291357-22291376 | None:intergenic | 35.0% |
| ! | TTTTTACTAAGTCAAGGCTC+TGG | - | chr2_2:22291358-22291377 | None:intergenic | 35.0% |
| ATCCCAACTATAAACTCTAC+AGG | + | chr2_2:22291509-22291528 | Msa0244130:intron | 35.0% | |
| AGCCTGTAGAGTTTATAGTT+GGG | - | chr2_2:22291514-22291533 | None:intergenic | 35.0% | |
| AAGCCTGTAGAGTTTATAGT+TGG | - | chr2_2:22291515-22291534 | None:intergenic | 35.0% | |
| ! | AAGCTAGCTTACACTTATAG+CGG | + | chr2_2:22291932-22291951 | Msa0244130:intron | 35.0% |
| !!! | TTTTTTAGACACCAAGAGTC+TGG | - | chr2_2:22292271-22292290 | None:intergenic | 35.0% |
| TGATATTTATGGTCTCATCG+AGG | - | chr2_2:22292347-22292366 | None:intergenic | 35.0% | |
| ! | GTCAATGAAGTTGACTTAGT+TGG | + | chr2_2:22292423-22292442 | Msa0244130:intron | 35.0% |
| ! | CCGTAAAGTTGAACTCTTTT+AGG | + | chr2_2:22292462-22292481 | Msa0244130:intron | 35.0% |
| !! | AAAGTTGAACTCTTTTAGGG+AGG | + | chr2_2:22292466-22292485 | Msa0244130:intron | 35.0% |
| !! | AAGTTGAACTCTTTTAGGGA+GGG | + | chr2_2:22292467-22292486 | Msa0244130:intron | 35.0% |
| GACTATTTAAGCTTGGAACA+AGG | + | chr2_2:22292503-22292522 | Msa0244130:intron | 35.0% | |
| CATCAAAGAGAGATGATTGA+GGG | - | chr2_2:22292605-22292624 | None:intergenic | 35.0% | |
| ! | AACTTGCCTTGTCATTTCAA+TGG | + | chr2_2:22293061-22293080 | Msa0244130:intron | 35.0% |
| TAAGGTCCATTGAAATGACA+AGG | - | chr2_2:22293070-22293089 | None:intergenic | 35.0% | |
| !! | TCCAAATCTTTTCTGAAGGA+AGG | - | chr2_2:22291267-22291286 | None:intergenic | 35.0% |
| !!! | ACGCGTTTTTTACTAAGTCA+AGG | - | chr2_2:22293303-22293322 | None:intergenic | 35.0% |
| ! | CTGATGATGTGTAAAAAGGA+AGG | - | chr2_2:22293510-22293529 | None:intergenic | 35.0% |
| ACCTTCCTTCAGAAAAGATT+TGG | + | chr2_2:22291263-22291282 | Msa0244130:intron | 35.0% | |
| !! | TCCAAATCTTTTCTGAAGGA+AGG | - | chr2_2:22291267-22291286 | None:intergenic | 35.0% |
| ! | TTTTACTAAGTCAAGGCTCT+GGG | - | chr2_2:22291357-22291376 | None:intergenic | 35.0% |
| ! | TTTTTACTAAGTCAAGGCTC+TGG | - | chr2_2:22291358-22291377 | None:intergenic | 35.0% |
| ATCCCAACTATAAACTCTAC+AGG | + | chr2_2:22291509-22291528 | Msa0244130:intron | 35.0% | |
| AGCCTGTAGAGTTTATAGTT+GGG | - | chr2_2:22291514-22291533 | None:intergenic | 35.0% | |
| AAGCCTGTAGAGTTTATAGT+TGG | - | chr2_2:22291515-22291534 | None:intergenic | 35.0% | |
| ! | AAGCTAGCTTACACTTATAG+CGG | + | chr2_2:22291932-22291951 | Msa0244130:intron | 35.0% |
| !!! | TTTTTTAGACACCAAGAGTC+TGG | - | chr2_2:22292271-22292290 | None:intergenic | 35.0% |
| TGATATTTATGGTCTCATCG+AGG | - | chr2_2:22292347-22292366 | None:intergenic | 35.0% | |
| ! | GTCAATGAAGTTGACTTAGT+TGG | + | chr2_2:22292423-22292442 | Msa0244130:intron | 35.0% |
| ! | CCGTAAAGTTGAACTCTTTT+AGG | + | chr2_2:22292462-22292481 | Msa0244130:intron | 35.0% |
| !! | AAAGTTGAACTCTTTTAGGG+AGG | + | chr2_2:22292466-22292485 | Msa0244130:intron | 35.0% |
| !! | AAGTTGAACTCTTTTAGGGA+GGG | + | chr2_2:22292467-22292486 | Msa0244130:intron | 35.0% |
| GACTATTTAAGCTTGGAACA+AGG | + | chr2_2:22292503-22292522 | Msa0244130:intron | 35.0% | |
| CATCAAAGAGAGATGATTGA+GGG | - | chr2_2:22292605-22292624 | None:intergenic | 35.0% | |
| ! | AACTTGCCTTGTCATTTCAA+TGG | + | chr2_2:22293061-22293080 | Msa0244130:intron | 35.0% |
| TAAGGTCCATTGAAATGACA+AGG | - | chr2_2:22293070-22293089 | None:intergenic | 35.0% | |
| !! | TCCAAATCTTTTCTGAAGGA+AGG | - | chr2_2:22291267-22291286 | None:intergenic | 35.0% |
| !!! | ACGCGTTTTTTACTAAGTCA+AGG | - | chr2_2:22293303-22293322 | None:intergenic | 35.0% |
| ! | CTGATGATGTGTAAAAAGGA+AGG | - | chr2_2:22293510-22293529 | None:intergenic | 35.0% |
| CAACGAAGTTGAGATGATGA+AGG | + | chr2_2:22291307-22291326 | Msa0244130:intron | 40.0% | |
| TGGACTGTAGCAGAATTTGT+AGG | + | chr2_2:22291663-22291682 | Msa0244130:CDS | 40.0% | |
| !! | AGTTGAACTCTTTTAGGGAG+GGG | + | chr2_2:22292468-22292487 | Msa0244130:intron | 40.0% |
| !! | GTGCGTTGACTATTTAAGCT+TGG | + | chr2_2:22292496-22292515 | Msa0244130:intron | 40.0% |
| CCATCAAAGAGAGATGATTG+AGG | - | chr2_2:22292606-22292625 | None:intergenic | 40.0% | |
| CCTCAATCATCTCTCTTTGA+TGG | + | chr2_2:22292603-22292622 | Msa0244130:intron | 40.0% | |
| ! | GCATTCTTCTTGTGACTTGT+TGG | + | chr2_2:22292768-22292787 | Msa0244130:intron | 40.0% |
| GCCTTCCTTCAGAAAAGATT+TGG | + | chr2_2:22293209-22293228 | Msa0244130:intron | 40.0% | |
| ! | GCAGTCCAAATCTTTTCTGA+AGG | - | chr2_2:22293217-22293236 | None:intergenic | 40.0% |
| CAACGAAGTTGAGATGATGA+AGG | + | chr2_2:22291307-22291326 | Msa0244130:intron | 40.0% | |
| TGGACTGTAGCAGAATTTGT+AGG | + | chr2_2:22291663-22291682 | Msa0244130:CDS | 40.0% | |
| !! | AGTTGAACTCTTTTAGGGAG+GGG | + | chr2_2:22292468-22292487 | Msa0244130:intron | 40.0% |
| !! | GTGCGTTGACTATTTAAGCT+TGG | + | chr2_2:22292496-22292515 | Msa0244130:intron | 40.0% |
| CCATCAAAGAGAGATGATTG+AGG | - | chr2_2:22292606-22292625 | None:intergenic | 40.0% | |
| CCTCAATCATCTCTCTTTGA+TGG | + | chr2_2:22292603-22292622 | Msa0244130:intron | 40.0% | |
| ! | GCATTCTTCTTGTGACTTGT+TGG | + | chr2_2:22292768-22292787 | Msa0244130:intron | 40.0% |
| GCCTTCCTTCAGAAAAGATT+TGG | + | chr2_2:22293209-22293228 | Msa0244130:intron | 40.0% | |
| ! | GCAGTCCAAATCTTTTCTGA+AGG | - | chr2_2:22293217-22293236 | None:intergenic | 40.0% |
| GCGAATGAGCTTAGAGTGAT+TGG | + | chr2_2:22291904-22291923 | Msa0244130:intron | 45.0% | |
| TGTCTTAGCAACCAGACTCT+TGG | + | chr2_2:22292257-22292276 | Msa0244130:intron | 45.0% | |
| ! | GATTTTGCTCGATCCTTCGT+CGG | + | chr2_2:22292535-22292554 | Msa0244130:intron | 45.0% |
| TGGGGAGTAACAGAATCTGT+AGG | + | chr2_2:22293598-22293617 | Msa0244130:CDS | 45.0% | |
| GCGAATGAGCTTAGAGTGAT+TGG | + | chr2_2:22291904-22291923 | Msa0244130:intron | 45.0% | |
| TGTCTTAGCAACCAGACTCT+TGG | + | chr2_2:22292257-22292276 | Msa0244130:intron | 45.0% | |
| ! | GATTTTGCTCGATCCTTCGT+CGG | + | chr2_2:22292535-22292554 | Msa0244130:intron | 45.0% |
| TGGGGAGTAACAGAATCTGT+AGG | + | chr2_2:22293598-22293617 | Msa0244130:CDS | 45.0% | |
| AACGAGCAAAGCTCCGACGA+AGG | - | chr2_2:22292551-22292570 | None:intergenic | 55.0% | |
| GGAGCTTTGCTCGTTGCTCA+TGG | + | chr2_2:22292556-22292575 | Msa0244130:intron | 55.0% | |
| AACGAGCAAAGCTCCGACGA+AGG | - | chr2_2:22292551-22292570 | None:intergenic | 55.0% | |
| GGAGCTTTGCTCGTTGCTCA+TGG | + | chr2_2:22292556-22292575 | Msa0244130:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 22291187 | 22293633 | 22291187 | ID=Msa0244130;Name=Msa0244130 |
| chr2_2 | mRNA | 22291187 | 22293633 | 22291187 | ID=Msa0244130-mRNA-1;Parent=Msa0244130;Name=Msa0244130-mRNA-1;_AED=0.58;_eAED=0.58;_QI=0|0|0|0.66|1|1|3|0|83 |
| chr2_2 | exon | 22291187 | 22291190 | 22291187 | ID=Msa0244130-mRNA-1:exon:8611;Parent=Msa0244130-mRNA-1 |
| chr2_2 | exon | 22291592 | 22291684 | 22291592 | ID=Msa0244130-mRNA-1:exon:8612;Parent=Msa0244130-mRNA-1 |
| chr2_2 | exon | 22293479 | 22293633 | 22293479 | ID=Msa0244130-mRNA-1:exon:8613;Parent=Msa0244130-mRNA-1 |
| chr2_2 | CDS | 22291187 | 22291190 | 22291187 | ID=Msa0244130-mRNA-1:cds;Parent=Msa0244130-mRNA-1 |
| chr2_2 | CDS | 22291592 | 22291684 | 22291592 | ID=Msa0244130-mRNA-1:cds;Parent=Msa0244130-mRNA-1 |
| chr2_2 | CDS | 22293479 | 22293633 | 22293479 | ID=Msa0244130-mRNA-1:cds;Parent=Msa0244130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
